Warning: Permanently added '54.227.84.242' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8372298-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64


Version: 1.2
PID: 10188
Logging PID: 10189
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': False,
 'build_id': 8372298,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': 'fe0fdedb80115e559da92db0c44165d3f8496be7',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/davidsch/sagitter/bout++',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'bout++',
 'package_version': '5.2.0.dev574+ge3f21cd2f-1',
 'project_dirname': 'sagitter',
 'project_name': 'sagitter',
 'project_owner': 'davidsch',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/davidsch/sagitter/fedora-rawhide-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None},
           {'baseurl': 'https://download.copr.fedorainfracloud.org/results/sagitter/ForTesting/fedora-rawhide-x86_64/',
            'id': 'copr_sagitter_ForTesting',
            'name': 'Additional repo copr_sagitter_ForTesting'}],
 'sandbox': 'davidsch/sagitter--davidsch',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': 0,
 'submitter': 'davidsch',
 'tags': [],
 'task_id': '8372298-fedora-rawhide-x86_64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/davidsch/sagitter/bout++ /var/lib/copr-rpmbuild/workspace/workdir-prji1mfa/bout++ --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/davidsch/sagitter/bout++', '/var/lib/copr-rpmbuild/workspace/workdir-prji1mfa/bout++', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-prji1mfa/bout++'...

Running: git checkout fe0fdedb80115e559da92db0c44165d3f8496be7 --

cmd: ['git', 'checkout', 'fe0fdedb80115e559da92db0c44165d3f8496be7', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-prji1mfa/bout++
rc: 0
stdout: 
stderr: Note: switching to 'fe0fdedb80115e559da92db0c44165d3f8496be7'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at fe0fded automatic import of bout++

Running: dist-git-client sources

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-prji1mfa/bout++
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading BOUT++-v5.2.0.dev574+ge3f21cd2f.tar.xz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o BOUT++-v5.2.0.dev574+ge3f21cd2f.tar.xz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/davidsch/sagitter/bout++/BOUT++-v5.2.0.dev574+ge3f21cd2f.tar.xz/md5/9ba4a2715a4391e6da27ac26f64eb3f4/BOUT++-v5.2.0.dev574+ge3f21cd2f.tar.xz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 12.1M  100 12.1M    0     0   149M      0 --:--:-- --:--:-- --:--:--  150M
INFO: Reading stdout from command: md5sum BOUT++-v5.2.0.dev574+ge3f21cd2f.tar.xz

/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-prji1mfa/bout++/bout++.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-prji1mfa/bout++ --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1733832619.107295 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.9 starting (python version = 3.13.0, NVR = mock-5.9-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-prji1mfa/bout++/bout++.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-prji1mfa/bout++ --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1733832619.107295 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-prji1mfa/bout++/bout++.spec)  Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.9
INFO: Mock Version: 5.9
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1733832619.107295/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1733832619.107295/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/f7af71a356cac58dc52165bd3f461f114d8769466d246a8e3e0a0bc32cff1d79/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/f7af71a356cac58dc52165bd3f461f114d8769466d246a8e3e0a0bc32cff1d79/merged) with podman image umount
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1733832619.107295/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.20.0-1.fc42.x86_64
  rpm-sequoia-1.7.0-3.fc42.x86_64
  dnf5-5.2.8.1-1.fc42.x86_64
  dnf5-plugins-5.2.8.1-1.fc42.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 fedora                                 100% |  33.3 MiB/s |  21.7 MiB |  00m01s
 Copr repository                        100% | 194.8 KiB/s |   7.2 KiB |  00m00s
 Additional repo copr_sagitter_ForTesti 100% | 525.3 KiB/s |  20.5 KiB |  00m00s
Repositories loaded.
Package                            Arch   Version                    Repository      Size
Installing group/module packages:
 bash                              x86_64 5.2.37-1.fc42              fedora       8.2 MiB
 bzip2                             x86_64 1.0.8-19.fc41              fedora      95.7 KiB
 coreutils                         x86_64 9.5-11.fc42                fedora       5.4 MiB
 cpio                              x86_64 2.15-2.fc41                fedora       1.1 MiB
 diffutils                         x86_64 3.10-8.fc41                fedora       1.6 MiB
 fedora-release-common             noarch 42-0.11                    fedora      19.8 KiB
 findutils                         x86_64 1:4.10.0-4.fc41            fedora       1.8 MiB
 gawk                              x86_64 5.3.0-4.fc41               fedora       1.7 MiB
 glibc-minimal-langpack            x86_64 2.40.9000-21.fc42          fedora       0.0   B
 grep                              x86_64 3.11-9.fc41                fedora       1.0 MiB
 gzip                              x86_64 1.13-2.fc41                fedora     389.0 KiB
 info                              x86_64 7.1.1-2.fc42               fedora     361.8 KiB
 patch                             x86_64 2.7.6-25.fc41              fedora     266.7 KiB
 redhat-rpm-config                 noarch 296-1.fc42                 fedora     186.6 KiB
 rpm-build                         x86_64 4.20.0-1.fc42              fedora     194.3 KiB
 sed                               x86_64 4.9-3.fc41                 fedora     861.5 KiB
 shadow-utils                      x86_64 2:4.16.0-7.fc42            fedora       4.0 MiB
 tar                               x86_64 2:1.35-4.fc41              fedora       2.9 MiB
 unzip                             x86_64 6.0-65.fc42                fedora     398.2 KiB
 util-linux                        x86_64 2.40.2-8.fc42              fedora       3.7 MiB
 which                             x86_64 2.21-42.fc41               fedora      80.2 KiB
 xz                                x86_64 1:5.6.3-2.fc42             fedora       1.2 MiB
Installing dependencies:
 add-determinism                   x86_64 0.4.3-1.fc42               fedora       2.4 MiB
 alternatives                      x86_64 1.30-1.fc41                fedora      66.3 KiB
 ansible-srpm-macros               noarch 1-16.fc41                  fedora      35.7 KiB
 audit-libs                        x86_64 4.0.2-1.fc41               fedora     331.3 KiB
 authselect                        x86_64 1.5.0-8.fc42               fedora     157.5 KiB
 authselect-libs                   x86_64 1.5.0-8.fc42               fedora     822.2 KiB
 basesystem                        noarch 11-21.fc41                 fedora       0.0   B
 binutils                          x86_64 2.43.50-9.fc42             fedora      25.8 MiB
 build-reproducibility-srpm-macros noarch 0.4.3-1.fc42               fedora     735.0   B
 bzip2-libs                        x86_64 1.0.8-19.fc41              fedora      80.7 KiB
 ca-certificates                   noarch 2024.2.69_v8.0.401-3.fc42  fedora       2.6 MiB
 coreutils-common                  x86_64 9.5-11.fc42                fedora      11.2 MiB
 cracklib                          x86_64 2.9.11-6.fc41              fedora     238.9 KiB
 crypto-policies                   noarch 20241128-1.gitbb7b0b0.fc42 fedora     137.3 KiB
 curl                              x86_64 8.10.1-2.fc42              fedora     453.3 KiB
 cyrus-sasl-lib                    x86_64 2.1.28-27.fc41             fedora       2.3 MiB
 debugedit                         x86_64 5.1-2.fc42                 fedora     200.3 KiB
 dwz                               x86_64 0.15-8.fc42                fedora     299.2 KiB
 ed                                x86_64 1.20.2-2.fc41              fedora     146.9 KiB
 efi-srpm-macros                   noarch 5-13.fc42                  fedora      40.2 KiB
 elfutils                          x86_64 0.192-7.fc42               fedora       2.6 MiB
 elfutils-debuginfod-client        x86_64 0.192-7.fc42               fedora      81.4 KiB
 elfutils-default-yama-scope       noarch 0.192-7.fc42               fedora       1.8 KiB
 elfutils-libelf                   x86_64 0.192-7.fc42               fedora       1.2 MiB
 elfutils-libs                     x86_64 0.192-7.fc42               fedora     662.9 KiB
 fedora-gpg-keys                   noarch 42-0.3                     fedora     126.4 KiB
 fedora-release                    noarch 42-0.11                    fedora       0.0   B
 fedora-release-identity-basic     noarch 42-0.11                    fedora     719.0   B
 fedora-repos                      noarch 42-0.3                     fedora       4.9 KiB
 fedora-repos-rawhide              noarch 42-0.3                     fedora       2.2 KiB
 file                              x86_64 5.45-8.fc42                fedora     103.7 KiB
 file-libs                         x86_64 5.45-8.fc42                fedora       9.9 MiB
 filesystem                        x86_64 3.18-29.fc42               fedora     106.0   B
 fonts-srpm-macros                 noarch 1:2.0.5-17.fc41            fedora      55.8 KiB
 forge-srpm-macros                 noarch 0.4.0-1.fc42               fedora      38.9 KiB
 fpc-srpm-macros                   noarch 1.3-13.fc41                fedora     144.0   B
 gdb-minimal                       x86_64 15.2-3.fc42                fedora      13.0 MiB
 gdbm                              x86_64 1:1.23-7.fc41              fedora     460.9 KiB
 gdbm-libs                         x86_64 1:1.23-7.fc41              fedora     121.9 KiB
 ghc-srpm-macros                   noarch 1.9.2-1.fc42               fedora     779.0   B
 glibc                             x86_64 2.40.9000-21.fc42          fedora       6.6 MiB
 glibc-common                      x86_64 2.40.9000-21.fc42          fedora       1.0 MiB
 glibc-gconv-extra                 x86_64 2.40.9000-21.fc42          fedora       8.0 MiB
 gmp                               x86_64 1:6.3.0-2.fc41             fedora     811.4 KiB
 gnat-srpm-macros                  noarch 6-6.fc41                   fedora       1.0 KiB
 go-srpm-macros                    noarch 3.6.0-5.fc42               fedora      60.8 KiB
 jansson                           x86_64 2.14-1.fc42                fedora      93.1 KiB
 json-c                            x86_64 0.18-1.fc42                fedora      83.3 KiB
 kernel-srpm-macros                noarch 1.0-24.fc41                fedora       1.9 KiB
 keyutils-libs                     x86_64 1.6.3-4.fc41               fedora      54.4 KiB
 krb5-libs                         x86_64 1.21.3-3.fc42              fedora       2.3 MiB
 libacl                            x86_64 2.3.2-2.fc41               fedora      40.0 KiB
 libarchive                        x86_64 3.7.7-1.fc42               fedora     932.3 KiB
 libattr                           x86_64 2.5.2-4.fc41               fedora      28.5 KiB
 libblkid                          x86_64 2.40.2-8.fc42              fedora     262.5 KiB
 libbrotli                         x86_64 1.1.0-5.fc41               fedora     837.6 KiB
 libcap                            x86_64 2.71-1.fc42                fedora     210.8 KiB
 libcap-ng                         x86_64 0.8.5-3.fc41               fedora      69.2 KiB
 libcom_err                        x86_64 1.47.1-6.fc42              fedora      67.2 KiB
 libcurl                           x86_64 8.10.1-2.fc42              fedora     838.4 KiB
 libeconf                          x86_64 0.7.4-3.fc42               fedora      65.7 KiB
 libevent                          x86_64 2.1.12-14.fc41             fedora     895.7 KiB
 libfdisk                          x86_64 2.40.2-8.fc42              fedora     362.9 KiB
 libffi                            x86_64 3.4.6-3.fc42               fedora      86.4 KiB
 libgcc                            x86_64 14.2.1-6.fc42              fedora     270.6 KiB
 libgomp                           x86_64 14.2.1-6.fc42              fedora     519.8 KiB
 libidn2                           x86_64 2.3.7-2.fc41               fedora     329.1 KiB
 libmount                          x86_64 2.40.2-8.fc42              fedora     355.8 KiB
 libnghttp2                        x86_64 1.64.0-1.fc42              fedora     174.5 KiB
 libnsl2                           x86_64 2.0.1-2.fc41               fedora      57.9 KiB
 libpkgconf                        x86_64 2.3.0-1.fc42               fedora      78.2 KiB
 libpsl                            x86_64 0.21.5-4.fc41              fedora      80.5 KiB
 libpwquality                      x86_64 1.4.5-11.fc41              fedora     417.8 KiB
 libselinux                        x86_64 3.8-0.rc1.2.fc42           fedora     191.6 KiB
 libsemanage                       x86_64 3.8-0.rc1.1.fc42           fedora     305.3 KiB
 libsepol                          x86_64 3.8-0.rc1.1.fc42           fedora     822.0 KiB
 libsmartcols                      x86_64 2.40.2-8.fc42              fedora     180.4 KiB
 libssh                            x86_64 0.11.1-1.fc42              fedora     569.6 KiB
 libssh-config                     noarch 0.11.1-1.fc42              fedora     277.0   B
 libstdc++                         x86_64 14.2.1-6.fc42              fedora       2.8 MiB
 libtasn1                          x86_64 4.19.0-9.fc41              fedora     175.7 KiB
 libtirpc                          x86_64 1.3.6-1.fc42               fedora     205.5 KiB
 libtool-ltdl                      x86_64 2.5.4-1.fc42               fedora      68.1 KiB
 libunistring                      x86_64 1.1-8.fc41                 fedora       1.7 MiB
 libuuid                           x86_64 2.40.2-8.fc42              fedora      41.4 KiB
 libverto                          x86_64 0.3.2-9.fc41               fedora      29.5 KiB
 libxcrypt                         x86_64 4.4.36-11.fc42             fedora     271.4 KiB
 libxml2                           x86_64 2.12.8-2.fc41              fedora       1.7 MiB
 libzstd                           x86_64 1.5.6-2.fc41               fedora     795.9 KiB
 lua-libs                          x86_64 5.4.7-1.fc42               fedora     285.0 KiB
 lua-srpm-macros                   noarch 1-14.fc41                  fedora       1.3 KiB
 lz4-libs                          x86_64 1.10.0-1.fc41              fedora     145.5 KiB
 mpfr                              x86_64 4.2.1-5.fc41               fedora     832.1 KiB
 ncurses-base                      noarch 6.5-2.20240629.fc41        fedora     326.3 KiB
 ncurses-libs                      x86_64 6.5-2.20240629.fc41        fedora     975.2 KiB
 ocaml-srpm-macros                 noarch 10-3.fc41                  fedora       1.9 KiB
 openblas-srpm-macros              noarch 2-18.fc41                  fedora     112.0   B
 openldap                          x86_64 2.6.8-6.fc42               fedora     647.4 KiB
 openssl-libs                      x86_64 1:3.2.2-8.fc42             fedora       7.8 MiB
 p11-kit                           x86_64 0.25.5-4.fc42              fedora       2.2 MiB
 p11-kit-trust                     x86_64 0.25.5-4.fc42              fedora     403.8 KiB
 package-notes-srpm-macros         noarch 0.5-12.fc41                fedora       1.6 KiB
 pam                               x86_64 1.7.0-3.fc42               fedora       1.8 MiB
 pam-libs                          x86_64 1.7.0-3.fc42               fedora     139.4 KiB
 pcre2                             x86_64 10.44-1.fc41.1             fedora     653.5 KiB
 pcre2-syntax                      noarch 10.44-1.fc41.1             fedora     251.6 KiB
 perl-srpm-macros                  noarch 1-56.fc41                  fedora     861.0   B
 pkgconf                           x86_64 2.3.0-1.fc42               fedora      88.6 KiB
 pkgconf-m4                        noarch 2.3.0-1.fc42               fedora      14.4 KiB
 pkgconf-pkg-config                x86_64 2.3.0-1.fc42               fedora     989.0   B
 popt                              x86_64 1.19-7.fc41                fedora     136.9 KiB
 publicsuffix-list-dafsa           noarch 20240107-4.fc41            fedora      67.5 KiB
 pyproject-srpm-macros             noarch 1.16.3-1.fc42              fedora       1.9 KiB
 python-srpm-macros                noarch 3.13-3.fc41                fedora      51.0 KiB
 qt5-srpm-macros                   noarch 5.15.15-1.fc42             fedora     500.0   B
 qt6-srpm-macros                   noarch 6.8.1-3.fc42               fedora     456.0   B
 readline                          x86_64 8.2-11.fc42                fedora     493.1 KiB
 rpm                               x86_64 4.20.0-1.fc42              fedora       3.1 MiB
 rpm-build-libs                    x86_64 4.20.0-1.fc42              fedora     206.7 KiB
 rpm-libs                          x86_64 4.20.0-1.fc42              fedora     726.1 KiB
 rpm-sequoia                       x86_64 1.7.0-3.fc42               fedora       2.3 MiB
 rust-srpm-macros                  noarch 26.3-3.fc42                fedora       4.8 KiB
 setup                             noarch 2.15.0-5.fc41              fedora     720.7 KiB
 sqlite-libs                       x86_64 3.47.1-1.fc42              fedora       1.4 MiB
 systemd-libs                      x86_64 257~rc3-1.fc42             fedora       2.3 MiB
 util-linux-core                   x86_64 2.40.2-8.fc42              fedora       1.5 MiB
 xxhash-libs                       x86_64 0.8.2-4.fc42               fedora      88.4 KiB
 xz-libs                           x86_64 1:5.6.3-2.fc42             fedora     218.4 KiB
 zig-srpm-macros                   noarch 1-3.fc41                   fedora       1.1 KiB
 zip                               x86_64 3.0-41.fc41                fedora     703.2 KiB
 zlib-ng-compat                    x86_64 2.2.2-1.fc42               fedora     134.0 KiB
 zstd                              x86_64 1.5.6-2.fc41               fedora       1.7 MiB
Installing groups:
 Buildsystem building group                                                              

Transaction Summary:
 Installing:       154 packages

Total size of inbound packages is 52 MiB. Need to download 52 MiB.
After this operation, 179 MiB extra will be used (install 179 MiB, remove 0 B).
[  1/154] bzip2-0:1.0.8-19.fc41.x86_64  100% |   4.7 MiB/s |  52.5 KiB |  00m00s
[  2/154] coreutils-0:9.5-11.fc42.x86_6 100% |  54.7 MiB/s |   1.1 MiB |  00m00s
[  3/154] cpio-0:2.15-2.fc41.x86_64     100% |  28.5 MiB/s | 291.8 KiB |  00m00s
[  4/154] bash-0:5.2.37-1.fc42.x86_64   100% |  75.3 MiB/s |   1.8 MiB |  00m00s
[  5/154] fedora-release-common-0:42-0. 100% |  11.7 MiB/s |  23.9 KiB |  00m00s
[  6/154] diffutils-0:3.10-8.fc41.x86_6 100% |  66.0 MiB/s | 405.4 KiB |  00m00s
[  7/154] findutils-1:4.10.0-4.fc41.x86 100% | 107.1 MiB/s | 548.6 KiB |  00m00s
[  8/154] glibc-minimal-langpack-0:2.40 100% |  23.6 MiB/s | 120.7 KiB |  00m00s
[  9/154] grep-0:3.11-9.fc41.x86_64     100% |  48.8 MiB/s | 299.8 KiB |  00m00s
[ 10/154] gzip-0:1.13-2.fc41.x86_64     100% |  41.6 MiB/s | 170.2 KiB |  00m00s
[ 11/154] info-0:7.1.1-2.fc42.x86_64    100% |  35.8 MiB/s | 183.2 KiB |  00m00s
[ 12/154] patch-0:2.7.6-25.fc41.x86_64  100% |  25.6 MiB/s | 131.0 KiB |  00m00s
[ 13/154] redhat-rpm-config-0:296-1.fc4 100% |  16.1 MiB/s |  82.4 KiB |  00m00s
[ 14/154] rpm-build-0:4.20.0-1.fc42.x86 100% |  20.2 MiB/s |  82.7 KiB |  00m00s
[ 15/154] sed-0:4.9-3.fc41.x86_64       100% |  62.1 MiB/s | 317.7 KiB |  00m00s
[ 16/154] tar-2:1.35-4.fc41.x86_64      100% | 140.1 MiB/s | 860.7 KiB |  00m00s
[ 17/154] shadow-utils-2:4.16.0-7.fc42. 100% | 146.4 MiB/s |   1.3 MiB |  00m00s
[ 18/154] unzip-0:6.0-65.fc42.x86_64    100% |  36.0 MiB/s | 184.5 KiB |  00m00s
[ 19/154] which-0:2.21-42.fc41.x86_64   100% |  20.3 MiB/s |  41.6 KiB |  00m00s
[ 20/154] xz-1:5.6.3-2.fc42.x86_64      100% |  92.8 MiB/s | 475.4 KiB |  00m00s
[ 21/154] gawk-0:5.3.0-4.fc41.x86_64    100% | 153.0 MiB/s |   1.1 MiB |  00m00s
[ 22/154] util-linux-0:2.40.2-8.fc42.x8 100% | 145.3 MiB/s |   1.2 MiB |  00m00s
[ 23/154] filesystem-0:3.18-29.fc42.x86 100% | 135.9 MiB/s |   1.1 MiB |  00m00s
[ 24/154] bzip2-libs-0:1.0.8-19.fc41.x8 100% |  13.4 MiB/s |  41.1 KiB |  00m00s
[ 25/154] glibc-0:2.40.9000-21.fc42.x86 100% | 182.1 MiB/s |   2.2 MiB |  00m00s
[ 26/154] ncurses-libs-0:6.5-2.20240629 100% |  29.6 MiB/s | 334.0 KiB |  00m00s
[ 27/154] libacl-0:2.3.2-2.fc41.x86_64  100% |   6.0 MiB/s |  24.5 KiB |  00m00s
[ 28/154] gmp-1:6.3.0-2.fc41.x86_64     100% |  51.8 MiB/s | 318.0 KiB |  00m00s
[ 29/154] coreutils-common-0:9.5-11.fc4 100% | 192.9 MiB/s |   2.1 MiB |  00m00s
[ 30/154] libattr-0:2.5.2-4.fc41.x86_64 100% |   5.9 MiB/s |  18.2 KiB |  00m00s
[ 31/154] libcap-0:2.71-1.fc42.x86_64   100% |  28.1 MiB/s |  86.4 KiB |  00m00s
[ 32/154] libselinux-0:3.8-0.rc1.2.fc42 100% |  22.1 MiB/s |  90.7 KiB |  00m00s
[ 33/154] systemd-libs-0:257~rc3-1.fc42 100% | 113.6 MiB/s | 814.4 KiB |  00m00s
[ 34/154] fedora-repos-0:42-0.3.noarch  100% |   1.8 MiB/s |   9.2 KiB |  00m00s
[ 35/154] openssl-libs-1:3.2.2-8.fc42.x 100% | 192.5 MiB/s |   2.3 MiB |  00m00s
[ 36/154] glibc-common-0:2.40.9000-21.f 100% |  64.2 MiB/s | 394.4 KiB |  00m00s
[ 37/154] pcre2-0:10.44-1.fc41.1.x86_64 100% |  39.6 MiB/s | 243.1 KiB |  00m00s
[ 38/154] ed-0:1.20.2-2.fc41.x86_64     100% |  20.0 MiB/s |  81.8 KiB |  00m00s
[ 39/154] build-reproducibility-srpm-ma 100% |   3.6 MiB/s |  11.2 KiB |  00m00s
[ 40/154] ansible-srpm-macros-0:1-16.fc 100% |   4.1 MiB/s |  20.8 KiB |  00m00s
[ 41/154] dwz-0:0.15-8.fc42.x86_64      100% |  34.0 MiB/s | 139.1 KiB |  00m00s
[ 42/154] efi-srpm-macros-0:5-13.fc42.n 100% |   5.5 MiB/s |  22.5 KiB |  00m00s
[ 43/154] file-0:5.45-8.fc42.x86_64     100% |  15.8 MiB/s |  48.6 KiB |  00m00s
[ 44/154] fonts-srpm-macros-1:2.0.5-17. 100% |  13.2 MiB/s |  27.0 KiB |  00m00s
[ 45/154] forge-srpm-macros-0:0.4.0-1.f 100% |   6.4 MiB/s |  19.8 KiB |  00m00s
[ 46/154] fpc-srpm-macros-0:1.3-13.fc41 100% |   2.6 MiB/s |   8.0 KiB |  00m00s
[ 47/154] ghc-srpm-macros-0:1.9.2-1.fc4 100% |   3.0 MiB/s |   9.1 KiB |  00m00s
[ 48/154] gnat-srpm-macros-0:6-6.fc41.n 100% |   4.4 MiB/s |   9.0 KiB |  00m00s
[ 49/154] go-srpm-macros-0:3.6.0-5.fc42 100% |  13.7 MiB/s |  28.0 KiB |  00m00s
[ 50/154] kernel-srpm-macros-0:1.0-24.f 100% |   3.2 MiB/s |   9.9 KiB |  00m00s
[ 51/154] lua-srpm-macros-0:1-14.fc41.n 100% |   4.3 MiB/s |   8.9 KiB |  00m00s
[ 52/154] ocaml-srpm-macros-0:10-3.fc41 100% |   4.5 MiB/s |   9.2 KiB |  00m00s
[ 53/154] package-notes-srpm-macros-0:0 100% |   4.8 MiB/s |   9.8 KiB |  00m00s
[ 54/154] openblas-srpm-macros-0:2-18.f 100% |   3.8 MiB/s |   7.7 KiB |  00m00s
[ 55/154] perl-srpm-macros-0:1-56.fc41. 100% |   2.8 MiB/s |   8.5 KiB |  00m00s
[ 56/154] python-srpm-macros-0:3.13-3.f 100% |  11.6 MiB/s |  23.7 KiB |  00m00s
[ 57/154] pyproject-srpm-macros-0:1.16. 100% |   4.5 MiB/s |  13.9 KiB |  00m00s
[ 58/154] qt5-srpm-macros-0:5.15.15-1.f 100% |   2.9 MiB/s |   8.9 KiB |  00m00s
[ 59/154] qt6-srpm-macros-0:6.8.1-3.fc4 100% |   4.5 MiB/s |   9.2 KiB |  00m00s
[ 60/154] rust-srpm-macros-0:26.3-3.fc4 100% |  11.8 MiB/s |  12.1 KiB |  00m00s
[ 61/154] rpm-0:4.20.0-1.fc42.x86_64    100% | 106.9 MiB/s | 547.3 KiB |  00m00s
[ 62/154] zig-srpm-macros-0:1-3.fc41.no 100% |   2.6 MiB/s |   8.1 KiB |  00m00s
[ 63/154] zip-0:3.0-41.fc41.x86_64      100% |  64.6 MiB/s | 264.8 KiB |  00m00s
[ 64/154] debugedit-0:5.1-2.fc42.x86_64 100% |  19.1 MiB/s |  78.2 KiB |  00m00s
[ 65/154] elfutils-0:0.192-7.fc42.x86_6 100% |  98.6 MiB/s | 504.7 KiB |  00m00s
[ 66/154] elfutils-libelf-0:0.192-7.fc4 100% |  66.6 MiB/s | 204.6 KiB |  00m00s
[ 67/154] libarchive-0:3.7.7-1.fc42.x86 100% | 101.1 MiB/s | 413.9 KiB |  00m00s
[ 68/154] popt-0:1.19-7.fc41.x86_64     100% |  21.5 MiB/s |  65.9 KiB |  00m00s
[ 69/154] readline-0:8.2-11.fc42.x86_64 100% |  41.7 MiB/s | 213.4 KiB |  00m00s
[ 70/154] rpm-build-libs-0:4.20.0-1.fc4 100% |  32.1 MiB/s |  98.7 KiB |  00m00s
[ 71/154] rpm-libs-0:4.20.0-1.fc42.x86_ 100% |  75.6 MiB/s | 309.5 KiB |  00m00s
[ 72/154] libeconf-0:0.7.4-3.fc42.x86_6 100% |  16.9 MiB/s |  34.6 KiB |  00m00s
[ 73/154] zstd-0:1.5.6-2.fc41.x86_64    100% |  94.0 MiB/s | 481.5 KiB |  00m00s
[ 74/154] audit-libs-0:4.0.2-1.fc41.x86 100% |  30.8 MiB/s | 126.2 KiB |  00m00s
[ 75/154] pam-libs-0:1.7.0-3.fc42.x86_6 100% |  28.3 MiB/s |  58.0 KiB |  00m00s
[ 76/154] libsemanage-0:3.8-0.rc1.1.fc4 100% |  28.3 MiB/s | 115.9 KiB |  00m00s
[ 77/154] libxcrypt-0:4.4.36-11.fc42.x8 100% |  23.1 MiB/s | 118.1 KiB |  00m00s
[ 78/154] setup-0:2.15.0-5.fc41.noarch  100% |  37.7 MiB/s | 154.4 KiB |  00m00s
[ 79/154] xz-libs-1:5.6.3-2.fc42.x86_64 100% |  27.3 MiB/s | 111.9 KiB |  00m00s
[ 80/154] libcap-ng-0:0.8.5-3.fc41.x86_ 100% |  15.9 MiB/s |  32.6 KiB |  00m00s
[ 81/154] mpfr-0:4.2.1-5.fc41.x86_64    100% |  67.6 MiB/s | 346.3 KiB |  00m00s
[ 82/154] libblkid-0:2.40.2-8.fc42.x86_ 100% |  30.5 MiB/s | 125.0 KiB |  00m00s
[ 83/154] libfdisk-0:2.40.2-8.fc42.x86_ 100% |  39.0 MiB/s | 159.6 KiB |  00m00s
[ 84/154] libmount-0:2.40.2-8.fc42.x86_ 100% |  38.1 MiB/s | 156.1 KiB |  00m00s
[ 85/154] libsmartcols-0:2.40.2-8.fc42. 100% |  27.3 MiB/s |  83.9 KiB |  00m00s
[ 86/154] libuuid-0:2.40.2-8.fc42.x86_6 100% |  14.1 MiB/s |  29.0 KiB |  00m00s
[ 87/154] zlib-ng-compat-0:2.2.2-1.fc42 100% |  18.8 MiB/s |  76.9 KiB |  00m00s
[ 88/154] util-linux-core-0:2.40.2-8.fc 100% | 104.9 MiB/s | 537.3 KiB |  00m00s
[ 89/154] basesystem-0:11-21.fc41.noarc 100% |   3.6 MiB/s |   7.4 KiB |  00m00s
[ 90/154] libgcc-0:14.2.1-6.fc42.x86_64 100% |  33.0 MiB/s | 135.2 KiB |  00m00s
[ 91/154] glibc-gconv-extra-0:2.40.9000 100% | 167.7 MiB/s |   1.5 MiB |  00m00s
[ 92/154] ncurses-base-0:6.5-2.20240629 100% |  17.3 MiB/s |  88.4 KiB |  00m00s
[ 93/154] libsepol-0:3.8-0.rc1.1.fc42.x 100% |  84.4 MiB/s | 345.7 KiB |  00m00s
[ 94/154] crypto-policies-0:20241128-1. 100% |  24.0 MiB/s |  98.4 KiB |  00m00s
[ 95/154] ca-certificates-0:2024.2.69_v 100% | 153.7 MiB/s | 944.5 KiB |  00m00s
[ 96/154] fedora-repos-rawhide-0:42-0.3 100% |   4.3 MiB/s |   8.8 KiB |  00m00s
[ 97/154] fedora-gpg-keys-0:42-0.3.noar 100% |  26.1 MiB/s | 133.6 KiB |  00m00s
[ 98/154] pcre2-syntax-0:10.44-1.fc41.1 100% |  36.6 MiB/s | 149.9 KiB |  00m00s
[ 99/154] add-determinism-0:0.4.3-1.fc4 100% | 176.6 MiB/s | 904.4 KiB |  00m00s
[100/154] file-libs-0:5.45-8.fc42.x86_6 100% | 106.5 MiB/s | 763.6 KiB |  00m00s
[101/154] curl-0:8.10.1-2.fc42.x86_64   100% |  30.9 MiB/s | 221.3 KiB |  00m00s
[102/154] elfutils-debuginfod-client-0: 100% |  14.3 MiB/s |  43.9 KiB |  00m00s
[103/154] elfutils-libs-0:0.192-7.fc42. 100% |  41.0 MiB/s | 251.9 KiB |  00m00s
[104/154] libzstd-0:1.5.6-2.fc41.x86_64 100% |  60.6 MiB/s | 310.3 KiB |  00m00s
[105/154] libxml2-0:2.12.8-2.fc41.x86_6 100% | 111.9 MiB/s | 687.3 KiB |  00m00s
[106/154] libstdc++-0:14.2.1-6.fc42.x86 100% | 108.7 MiB/s | 890.1 KiB |  00m00s
[107/154] lz4-libs-0:1.10.0-1.fc41.x86_ 100% |  17.3 MiB/s |  70.7 KiB |  00m00s
[108/154] libgomp-0:14.2.1-6.fc42.x86_6 100% |  87.1 MiB/s | 356.9 KiB |  00m00s
[109/154] lua-libs-0:5.4.7-1.fc42.x86_6 100% |  32.2 MiB/s | 132.1 KiB |  00m00s
[110/154] elfutils-default-yama-scope-0 100% |   6.1 MiB/s |  12.5 KiB |  00m00s
[111/154] rpm-sequoia-0:1.7.0-3.fc42.x8 100% | 134.4 MiB/s | 826.0 KiB |  00m00s
[112/154] sqlite-libs-0:3.47.1-1.fc42.x 100% | 136.6 MiB/s | 699.5 KiB |  00m00s
[113/154] json-c-0:0.18-1.fc42.x86_64   100% |  14.5 MiB/s |  44.4 KiB |  00m00s
[114/154] pam-0:1.7.0-3.fc42.x86_64     100% | 108.3 MiB/s | 554.3 KiB |  00m00s
[115/154] authselect-libs-0:1.5.0-8.fc4 100% |  21.3 MiB/s | 218.0 KiB |  00m00s
[116/154] authselect-0:1.5.0-8.fc42.x86 100% |  17.8 MiB/s | 145.8 KiB |  00m00s
[117/154] gdbm-libs-1:1.23-7.fc41.x86_6 100% |   6.1 MiB/s |  56.3 KiB |  00m00s
[118/154] libnsl2-0:2.0.1-2.fc41.x86_64 100% |   4.1 MiB/s |  29.6 KiB |  00m00s
[119/154] libpwquality-0:1.4.5-11.fc41. 100% |   8.9 MiB/s | 119.1 KiB |  00m00s
[120/154] cracklib-0:2.9.11-6.fc41.x86_ 100% |  15.0 MiB/s |  92.0 KiB |  00m00s
[121/154] libtirpc-0:1.3.6-1.fc42.x86_6 100% |  11.6 MiB/s |  94.9 KiB |  00m00s
[122/154] libcom_err-0:1.47.1-6.fc42.x8 100% |   8.6 MiB/s |  26.6 KiB |  00m00s
[123/154] keyutils-libs-0:1.6.3-4.fc41. 100% |   7.7 MiB/s |  31.6 KiB |  00m00s
[124/154] libverto-0:0.3.2-9.fc41.x86_6 100% |   6.7 MiB/s |  20.7 KiB |  00m00s
[125/154] krb5-libs-0:1.21.3-3.fc42.x86 100% |  74.3 MiB/s | 760.4 KiB |  00m00s
[126/154] alternatives-0:1.30-1.fc41.x8 100% |  13.8 MiB/s |  42.5 KiB |  00m00s
[127/154] jansson-0:2.14-1.fc42.x86_64  100% |   8.8 MiB/s |  45.3 KiB |  00m00s
[128/154] pkgconf-pkg-config-0:2.3.0-1. 100% |   2.0 MiB/s |  10.0 KiB |  00m00s
[129/154] pkgconf-m4-0:2.3.0-1.fc42.noa 100% |   3.5 MiB/s |  14.3 KiB |  00m00s
[130/154] pkgconf-0:2.3.0-1.fc42.x86_64 100% |   8.8 MiB/s |  45.2 KiB |  00m00s
[131/154] libpkgconf-0:2.3.0-1.fc42.x86 100% |  12.5 MiB/s |  38.5 KiB |  00m00s
[132/154] libffi-0:3.4.6-3.fc42.x86_64  100% |  13.0 MiB/s |  40.0 KiB |  00m00s
[133/154] gdbm-1:1.23-7.fc41.x86_64     100% |  21.2 MiB/s | 151.8 KiB |  00m00s
[134/154] p11-kit-0:0.25.5-4.fc42.x86_6 100% |  80.1 MiB/s | 492.0 KiB |  00m00s
[135/154] libtasn1-0:4.19.0-9.fc41.x86_ 100% |  12.1 MiB/s |  74.2 KiB |  00m00s
[136/154] binutils-0:2.43.50-9.fc42.x86 100% | 160.6 MiB/s |   5.8 MiB |  00m00s
[137/154] fedora-release-0:42-0.11.noar 100% |   2.5 MiB/s |  13.0 KiB |  00m00s
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[139/154] xxhash-libs-0:0.8.2-4.fc42.x8 100% |  18.0 MiB/s |  36.8 KiB |  00m00s
[140/154] fedora-release-identity-basic 100% |   6.7 MiB/s |  13.8 KiB |  00m00s
[141/154] libcurl-0:8.10.1-2.fc42.x86_6 100% |  45.3 MiB/s | 371.3 KiB |  00m00s
[142/154] libbrotli-0:1.1.0-5.fc41.x86_ 100% |  47.5 MiB/s | 340.5 KiB |  00m00s
[143/154] gdb-minimal-0:15.2-3.fc42.x86 100% | 215.6 MiB/s |   4.3 MiB |  00m00s
[144/154] libnghttp2-0:1.64.0-1.fc42.x8 100% |   9.5 MiB/s |  77.4 KiB |  00m00s
[145/154] libidn2-0:2.3.7-2.fc41.x86_64 100% |  12.8 MiB/s | 118.4 KiB |  00m00s
[146/154] libpsl-0:0.21.5-4.fc41.x86_64 100% |  15.6 MiB/s |  64.1 KiB |  00m00s
[147/154] libssh-0:0.11.1-1.fc42.x86_64 100% |  56.6 MiB/s | 231.9 KiB |  00m00s
[148/154] openldap-0:2.6.8-6.fc42.x86_6 100% |  47.5 MiB/s | 243.4 KiB |  00m00s
[149/154] libunistring-0:1.1-8.fc41.x86 100% |  88.7 MiB/s | 544.8 KiB |  00m00s
[150/154] publicsuffix-list-dafsa-0:202 100% |  11.4 MiB/s |  58.3 KiB |  00m00s
[151/154] libssh-config-0:0.11.1-1.fc42 100% |   2.3 MiB/s |   9.4 KiB |  00m00s
[152/154] libtool-ltdl-0:2.5.4-1.fc42.x 100% |  11.1 MiB/s |  34.2 KiB |  00m00s
[153/154] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 129.4 MiB/s | 794.9 KiB |  00m00s
[154/154] libevent-0:2.1.12-14.fc41.x86 100% |  41.9 MiB/s | 257.5 KiB |  00m00s
--------------------------------------------------------------------------------
[154/154] Total                         100% |  87.0 MiB/s |  52.3 MiB |  00m01s
Running transaction
Importing OpenPGP key 0x105EF944:
 UserID     : "Fedora (42) <fedora-42-primary@fedoraproject.org>"
 Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary
The key was successfully imported.
Importing OpenPGP key 0x105EF944:
 UserID     : "Fedora (42) <fedora-42-primary@fedoraproject.org>"
 Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary
The key was successfully imported.
Importing OpenPGP key 0xE99D6AD1:
 UserID     : "Fedora (41) <fedora-41-primary@fedoraproject.org>"
 Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary
The key was successfully imported.
Importing OpenPGP key 0x31645531:
 UserID     : "Fedora (43) <fedora-43-primary@fedoraproject.org>"
 Fingerprint: C6E7F081CF80E13146676E88829B606631645531
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary
The key was successfully imported.
[  1/156] Verify package files          100% | 916.0   B/s | 154.0   B |  00m00s
[  2/156] Prepare transaction           100% |   4.0 KiB/s | 154.0   B |  00m00s
[  3/156] Installing libgcc-0:14.2.1-6. 100% | 265.9 MiB/s | 272.3 KiB |  00m00s
[  4/156] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[  5/156] Installing publicsuffix-list- 100% |   0.0   B/s |  68.3 KiB |  00m00s
[  6/156] Installing fedora-release-ide 100% |   0.0   B/s | 976.0   B |  00m00s
[  7/156] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.4 KiB |  00m00s
[  8/156] Installing fedora-gpg-keys-0: 100% |  56.1 MiB/s | 172.2 KiB |  00m00s
[  9/156] Installing fedora-repos-0:42- 100% |   0.0   B/s |   5.7 KiB |  00m00s
[ 10/156] Installing fedora-release-com 100% |  23.6 MiB/s |  24.1 KiB |  00m00s
[ 11/156] Installing fedora-release-0:4 100% |   0.0   B/s | 124.0   B |  00m00s
[ 12/156] Installing setup-0:2.15.0-5.f 100% |  64.5 MiB/s | 726.1 KiB |  00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew
[ 13/156] Installing filesystem-0:3.18- 100% |   3.7 MiB/s | 212.6 KiB |  00m00s
[ 14/156] Installing basesystem-0:11-21 100% |   0.0   B/s | 124.0   B |  00m00s
[ 15/156] Installing pkgconf-m4-0:2.3.0 100% |   0.0   B/s |  14.8 KiB |  00m00s
[ 16/156] Installing pcre2-syntax-0:10. 100% | 248.1 MiB/s | 254.1 KiB |  00m00s
[ 17/156] Installing ncurses-base-0:6.5 100% |  85.9 MiB/s | 351.7 KiB |  00m00s
[ 18/156] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 19/156] Installing ncurses-libs-0:6.5 100% | 239.7 MiB/s | 981.8 KiB |  00m00s
[ 20/156] Installing glibc-0:2.40.9000- 100% | 332.8 MiB/s |   6.7 MiB |  00m00s
[ 21/156] Installing bash-0:5.2.37-1.fc 100% | 453.9 MiB/s |   8.2 MiB |  00m00s
[ 22/156] Installing glibc-common-0:2.4 100% | 208.4 MiB/s |   1.0 MiB |  00m00s
[ 23/156] Installing glibc-gconv-extra- 100% | 288.4 MiB/s |   8.1 MiB |  00m00s
[ 24/156] Installing zlib-ng-compat-0:2 100% | 131.7 MiB/s | 134.9 KiB |  00m00s
[ 25/156] Installing bzip2-libs-0:1.0.8 100% |   0.0   B/s |  81.8 KiB |  00m00s
[ 26/156] Installing xz-libs-1:5.6.3-2. 100% | 214.3 MiB/s | 219.5 KiB |  00m00s
[ 27/156] Installing popt-0:1.19-7.fc41 100% |  70.1 MiB/s | 143.5 KiB |  00m00s
[ 28/156] Installing readline-0:8.2-11. 100% | 241.8 MiB/s | 495.3 KiB |  00m00s
[ 29/156] Installing libuuid-0:2.40.2-8 100% |   0.0   B/s |  42.5 KiB |  00m00s
[ 30/156] Installing libblkid-0:2.40.2- 100% | 257.5 MiB/s | 263.6 KiB |  00m00s
[ 31/156] Installing gmp-1:6.3.0-2.fc41 100% | 397.3 MiB/s | 813.7 KiB |  00m00s
[ 32/156] Installing libattr-0:2.5.2-4. 100% |   0.0   B/s |  29.5 KiB |  00m00s
[ 33/156] Installing libacl-0:2.3.2-2.f 100% |   0.0   B/s |  40.7 KiB |  00m00s
[ 34/156] Installing libxcrypt-0:4.4.36 100% | 267.7 MiB/s | 274.1 KiB |  00m00s
[ 35/156] Installing libstdc++-0:14.2.1 100% | 394.3 MiB/s |   2.8 MiB |  00m00s
[ 36/156] Installing libzstd-0:1.5.6-2. 100% | 389.3 MiB/s | 797.2 KiB |  00m00s
[ 37/156] Installing elfutils-libelf-0: 100% | 389.0 MiB/s |   1.2 MiB |  00m00s
[ 38/156] Installing libeconf-0:0.7.4-3 100% |   0.0   B/s |  67.4 KiB |  00m00s
[ 39/156] Installing gdbm-libs-1:1.23-7 100% | 120.7 MiB/s | 123.6 KiB |  00m00s
[ 40/156] Installing dwz-0:0.15-8.fc42. 100% | 293.5 MiB/s | 300.6 KiB |  00m00s
[ 41/156] Installing mpfr-0:4.2.1-5.fc4 100% | 407.1 MiB/s | 833.7 KiB |  00m00s
[ 42/156] Installing gawk-0:5.3.0-4.fc4 100% | 346.4 MiB/s |   1.7 MiB |  00m00s
[ 43/156] Installing unzip-0:6.0-65.fc4 100% | 392.3 MiB/s | 401.7 KiB |  00m00s
[ 44/156] Installing file-libs-0:5.45-8 100% | 764.5 MiB/s |   9.9 MiB |  00m00s
[ 45/156] Installing file-0:5.45-8.fc42 100% |  14.7 MiB/s | 105.2 KiB |  00m00s
[ 46/156] Installing crypto-policies-0: 100% |  40.0 MiB/s | 163.7 KiB |  00m00s
[ 47/156] Installing pcre2-0:10.44-1.fc 100% | 319.8 MiB/s | 654.9 KiB |  00m00s
[ 48/156] Installing grep-0:3.11-9.fc41 100% | 250.8 MiB/s |   1.0 MiB |  00m00s
[ 49/156] Installing xz-1:5.6.3-2.fc42. 100% | 247.4 MiB/s |   1.2 MiB |  00m00s
[ 50/156] Installing libcap-ng-0:0.8.5- 100% |   0.0   B/s |  71.0 KiB |  00m00s
[ 51/156] Installing audit-libs-0:4.0.2 100% | 325.6 MiB/s | 333.4 KiB |  00m00s
[ 52/156] Installing pam-libs-0:1.7.0-3 100% | 138.5 MiB/s | 141.8 KiB |  00m00s
[ 53/156] Installing libcap-0:2.71-1.fc 100% | 210.8 MiB/s | 215.8 KiB |  00m00s
[ 54/156] Installing systemd-libs-0:257 100% | 377.3 MiB/s |   2.3 MiB |  00m00s
[ 55/156] Installing libsmartcols-0:2.4 100% | 177.1 MiB/s | 181.4 KiB |  00m00s
[ 56/156] Installing libsepol-0:3.8-0.r 100% | 401.9 MiB/s | 823.0 KiB |  00m00s
[ 57/156] Installing libselinux-0:3.8-0 100% | 188.4 MiB/s | 192.9 KiB |  00m00s
[ 58/156] Installing sed-0:4.9-3.fc41.x 100% | 212.3 MiB/s | 869.7 KiB |  00m00s
[ 59/156] Installing findutils-1:4.10.0 100% | 371.6 MiB/s |   1.9 MiB |  00m00s
[ 60/156] Installing libmount-0:2.40.2- 100% | 348.6 MiB/s | 356.9 KiB |  00m00s
[ 61/156] Installing lz4-libs-0:1.10.0- 100% | 143.1 MiB/s | 146.6 KiB |  00m00s
[ 62/156] Installing lua-libs-0:5.4.7-1 100% | 279.5 MiB/s | 286.2 KiB |  00m00s
[ 63/156] Installing libcom_err-0:1.47. 100% |   0.0   B/s |  68.3 KiB |  00m00s
[ 64/156] Installing alternatives-0:1.3 100% |   0.0   B/s |  67.9 KiB |  00m00s
[ 65/156] Installing libffi-0:3.4.6-3.f 100% |  85.7 MiB/s |  87.8 KiB |  00m00s
[ 66/156] Installing libtasn1-0:4.19.0- 100% | 173.3 MiB/s | 177.5 KiB |  00m00s
[ 67/156] Installing p11-kit-0:0.25.5-4 100% | 277.0 MiB/s |   2.2 MiB |  00m00s
[ 68/156] Installing libunistring-0:1.1 100% | 346.1 MiB/s |   1.7 MiB |  00m00s
[ 69/156] Installing libidn2-0:2.3.7-2. 100% | 163.6 MiB/s | 335.1 KiB |  00m00s
[ 70/156] Installing libpsl-0:0.21.5-4. 100% |   0.0   B/s |  81.7 KiB |  00m00s
[ 71/156] Installing p11-kit-trust-0:0. 100% |  56.6 MiB/s | 405.5 KiB |  00m00s
[ 72/156] Installing zstd-0:1.5.6-2.fc4 100% | 338.3 MiB/s |   1.7 MiB |  00m00s
[ 73/156] Installing util-linux-core-0: 100% | 254.6 MiB/s |   1.5 MiB |  00m00s
[ 74/156] Installing tar-2:1.35-4.fc41. 100% | 369.8 MiB/s |   3.0 MiB |  00m00s
[ 75/156] Installing libsemanage-0:3.8- 100% | 149.9 MiB/s | 307.1 KiB |  00m00s
[ 76/156] Installing shadow-utils-2:4.1 100% | 255.9 MiB/s |   4.1 MiB |  00m00s
[ 77/156] Installing zip-0:3.0-41.fc41. 100% | 345.2 MiB/s | 707.1 KiB |  00m00s
[ 78/156] Installing gdbm-1:1.23-7.fc41 100% | 227.4 MiB/s | 465.8 KiB |  00m00s
[ 79/156] Installing cyrus-sasl-lib-0:2 100% | 384.3 MiB/s |   2.3 MiB |  00m00s
[ 80/156] Installing libfdisk-0:2.40.2- 100% | 355.5 MiB/s | 364.0 KiB |  00m00s
[ 81/156] Installing libxml2-0:2.12.8-2 100% | 342.4 MiB/s |   1.7 MiB |  00m00s
[ 82/156] Installing bzip2-0:1.0.8-19.f 100% |  97.8 MiB/s | 100.2 KiB |  00m00s
[ 83/156] Installing add-determinism-0: 100% | 405.2 MiB/s |   2.4 MiB |  00m00s
[ 84/156] Installing build-reproducibil 100% |   0.0   B/s |   1.0 KiB |  00m00s
[ 85/156] Installing sqlite-libs-0:3.47 100% | 358.5 MiB/s |   1.4 MiB |  00m00s
[ 86/156] Installing ed-0:1.20.2-2.fc41 100% | 145.7 MiB/s | 149.2 KiB |  00m00s
[ 87/156] Installing patch-0:2.7.6-25.f 100% | 261.9 MiB/s | 268.2 KiB |  00m00s
[ 88/156] Installing elfutils-default-y 100% | 408.6 KiB/s |   2.0 KiB |  00m00s
[ 89/156] Installing elfutils-libs-0:0. 100% | 324.6 MiB/s | 664.7 KiB |  00m00s
[ 90/156] Installing cpio-0:2.15-2.fc41 100% | 274.9 MiB/s |   1.1 MiB |  00m00s
[ 91/156] Installing diffutils-0:3.10-8 100% | 318.1 MiB/s |   1.6 MiB |  00m00s
[ 92/156] Installing libgomp-0:14.2.1-6 100% | 254.5 MiB/s | 521.2 KiB |  00m00s
[ 93/156] Installing json-c-0:0.18-1.fc 100% |  82.6 MiB/s |  84.6 KiB |  00m00s
[ 94/156] Installing keyutils-libs-0:1. 100% |   0.0   B/s |  55.8 KiB |  00m00s
[ 95/156] Installing libverto-0:0.3.2-9 100% |   0.0   B/s |  31.3 KiB |  00m00s
[ 96/156] Installing jansson-0:2.14-1.f 100% |  92.3 MiB/s |  94.5 KiB |  00m00s
[ 97/156] Installing libpkgconf-0:2.3.0 100% |   0.0   B/s |  79.3 KiB |  00m00s
[ 98/156] Installing pkgconf-0:2.3.0-1. 100% |  89.0 MiB/s |  91.1 KiB |  00m00s
[ 99/156] Installing pkgconf-pkg-config 100% |   0.0   B/s |   1.8 KiB |  00m00s
[100/156] Installing xxhash-libs-0:0.8. 100% |   0.0   B/s |  89.8 KiB |  00m00s
[101/156] Installing libbrotli-0:1.1.0- 100% | 273.4 MiB/s | 839.9 KiB |  00m00s
[102/156] Installing libnghttp2-0:1.64. 100% | 171.5 MiB/s | 175.6 KiB |  00m00s
[103/156] Installing libtool-ltdl-0:2.5 100% |   0.0   B/s |  69.2 KiB |  00m00s
[104/156] Installing rust-srpm-macros-0 100% |   0.0   B/s |   5.6 KiB |  00m00s
[105/156] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 732.0   B |  00m00s
[106/156] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[107/156] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[108/156] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[109/156] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[110/156] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.2 KiB |  00m00s
[111/156] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[112/156] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[113/156] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[114/156] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[115/156] Installing ansible-srpm-macro 100% |  35.4 MiB/s |  36.2 KiB |  00m00s
[116/156] Installing coreutils-common-0 100% | 414.5 MiB/s |  11.2 MiB |  00m00s
[117/156] Installing openssl-libs-1:3.2 100% | 434.9 MiB/s |   7.8 MiB |  00m00s
[118/156] Installing coreutils-0:9.5-11 100% | 270.0 MiB/s |   5.4 MiB |  00m00s
[119/156] Installing ca-certificates-0: 100% |   2.1 MiB/s |   2.4 MiB |  00m01s
[120/156] Installing krb5-libs-0:1.21.3 100% | 288.1 MiB/s |   2.3 MiB |  00m00s
[121/156] Installing libarchive-0:3.7.7 100% | 304.1 MiB/s | 934.2 KiB |  00m00s
[122/156] Installing libtirpc-0:1.3.6-1 100% | 202.5 MiB/s | 207.3 KiB |  00m00s
[123/156] Installing gzip-0:1.13-2.fc41 100% | 192.7 MiB/s | 394.6 KiB |  00m00s
[124/156] Installing authselect-libs-0: 100% | 204.4 MiB/s | 837.2 KiB |  00m00s
[125/156] Installing cracklib-0:2.9.11- 100% |  81.5 MiB/s | 250.3 KiB |  00m00s
[126/156] Installing libpwquality-0:1.4 100% | 140.0 MiB/s | 430.1 KiB |  00m00s
[127/156] Installing libnsl2-0:2.0.1-2. 100% |  57.7 MiB/s |  59.1 KiB |  00m00s
[128/156] Installing pam-0:1.7.0-3.fc42 100% | 172.1 MiB/s |   1.9 MiB |  00m00s
[129/156] Installing libssh-0:0.11.1-1. 100% | 279.2 MiB/s | 571.7 KiB |  00m00s
[130/156] Installing rpm-sequoia-0:1.7. 100% | 387.3 MiB/s |   2.3 MiB |  00m00s
[131/156] Installing rpm-libs-0:4.20.0- 100% | 355.3 MiB/s | 727.7 KiB |  00m00s
[132/156] Installing rpm-build-libs-0:4 100% | 202.6 MiB/s | 207.5 KiB |  00m00s
[133/156] Installing libevent-0:2.1.12- 100% | 292.8 MiB/s | 899.5 KiB |  00m00s
[134/156] Installing openldap-0:2.6.8-6 100% | 212.0 MiB/s | 651.2 KiB |  00m00s
[135/156] Installing libcurl-0:8.10.1-2 100% | 409.9 MiB/s | 839.5 KiB |  00m00s
[136/156] Installing elfutils-debuginfo 100% |  81.8 MiB/s |  83.8 KiB |  00m00s
[137/156] Installing elfutils-0:0.192-7 100% | 377.8 MiB/s |   2.6 MiB |  00m00s
[138/156] Installing binutils-0:2.43.50 100% | 403.2 MiB/s |  25.8 MiB |  00m00s
[139/156] Installing gdb-minimal-0:15.2 100% | 406.0 MiB/s |  13.0 MiB |  00m00s
[140/156] Installing debugedit-0:5.1-2. 100% | 198.3 MiB/s | 203.0 KiB |  00m00s
[141/156] Installing curl-0:8.10.1-2.fc 100% |  44.5 MiB/s | 455.8 KiB |  00m00s
[142/156] Installing rpm-0:4.20.0-1.fc4 100% | 192.8 MiB/s |   2.5 MiB |  00m00s
[143/156] Installing efi-srpm-macros-0: 100% |   0.0   B/s |  41.2 KiB |  00m00s
[144/156] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[145/156] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[146/156] Installing fonts-srpm-macros- 100% |  55.7 MiB/s |  57.0 KiB |  00m00s
[147/156] Installing forge-srpm-macros- 100% |   0.0   B/s |  40.3 KiB |  00m00s
[148/156] Installing go-srpm-macros-0:3 100% |   0.0   B/s |  62.0 KiB |  00m00s
[149/156] Installing python-srpm-macros 100% |   0.0   B/s |  52.2 KiB |  00m00s
[150/156] Installing redhat-rpm-config- 100% |  94.4 MiB/s | 193.2 KiB |  00m00s
[151/156] Installing rpm-build-0:4.20.0 100% |  99.1 MiB/s | 202.9 KiB |  00m00s
[152/156] Installing pyproject-srpm-mac 100% |   2.4 MiB/s |   2.5 KiB |  00m00s
[153/156] Installing util-linux-0:2.40. 100% | 176.9 MiB/s |   3.7 MiB |  00m00s
[154/156] Installing authselect-0:1.5.0 100% |  79.1 MiB/s | 161.9 KiB |  00m00s
[155/156] Installing which-0:2.21-42.fc 100% |  80.5 MiB/s |  82.4 KiB |  00m00s
[156/156] Installing info-0:7.1.1-2.fc4 100% | 237.5 KiB/s | 362.2 KiB |  00m02s
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-0.4.3-1.fc42.x86_64
alternatives-1.30-1.fc41.x86_64
ansible-srpm-macros-1-16.fc41.noarch
audit-libs-4.0.2-1.fc41.x86_64
authselect-1.5.0-8.fc42.x86_64
authselect-libs-1.5.0-8.fc42.x86_64
basesystem-11-21.fc41.noarch
bash-5.2.37-1.fc42.x86_64
binutils-2.43.50-9.fc42.x86_64
build-reproducibility-srpm-macros-0.4.3-1.fc42.noarch
bzip2-1.0.8-19.fc41.x86_64
bzip2-libs-1.0.8-19.fc41.x86_64
ca-certificates-2024.2.69_v8.0.401-3.fc42.noarch
coreutils-9.5-11.fc42.x86_64
coreutils-common-9.5-11.fc42.x86_64
cpio-2.15-2.fc41.x86_64
cracklib-2.9.11-6.fc41.x86_64
crypto-policies-20241128-1.gitbb7b0b0.fc42.noarch
curl-8.10.1-2.fc42.x86_64
cyrus-sasl-lib-2.1.28-27.fc41.x86_64
debugedit-5.1-2.fc42.x86_64
diffutils-3.10-8.fc41.x86_64
dwz-0.15-8.fc42.x86_64
ed-1.20.2-2.fc41.x86_64
efi-srpm-macros-5-13.fc42.noarch
elfutils-0.192-7.fc42.x86_64
elfutils-debuginfod-client-0.192-7.fc42.x86_64
elfutils-default-yama-scope-0.192-7.fc42.noarch
elfutils-libelf-0.192-7.fc42.x86_64
elfutils-libs-0.192-7.fc42.x86_64
fedora-gpg-keys-42-0.3.noarch
fedora-release-42-0.11.noarch
fedora-release-common-42-0.11.noarch
fedora-release-identity-basic-42-0.11.noarch
fedora-repos-42-0.3.noarch
fedora-repos-rawhide-42-0.3.noarch
file-5.45-8.fc42.x86_64
file-libs-5.45-8.fc42.x86_64
filesystem-3.18-29.fc42.x86_64
findutils-4.10.0-4.fc41.x86_64
fonts-srpm-macros-2.0.5-17.fc41.noarch
forge-srpm-macros-0.4.0-1.fc42.noarch
fpc-srpm-macros-1.3-13.fc41.noarch
gawk-5.3.0-4.fc41.x86_64
gdb-minimal-15.2-3.fc42.x86_64
gdbm-1.23-7.fc41.x86_64
gdbm-libs-1.23-7.fc41.x86_64
ghc-srpm-macros-1.9.2-1.fc42.noarch
glibc-2.40.9000-21.fc42.x86_64
glibc-common-2.40.9000-21.fc42.x86_64
glibc-gconv-extra-2.40.9000-21.fc42.x86_64
glibc-minimal-langpack-2.40.9000-21.fc42.x86_64
gmp-6.3.0-2.fc41.x86_64
gnat-srpm-macros-6-6.fc41.noarch
go-srpm-macros-3.6.0-5.fc42.noarch
gpg-pubkey-105ef944-65ca83d1
gpg-pubkey-31645531-66b6dccf
gpg-pubkey-e99d6ad1-64d2612c
grep-3.11-9.fc41.x86_64
gzip-1.13-2.fc41.x86_64
info-7.1.1-2.fc42.x86_64
jansson-2.14-1.fc42.x86_64
json-c-0.18-1.fc42.x86_64
kernel-srpm-macros-1.0-24.fc41.noarch
keyutils-libs-1.6.3-4.fc41.x86_64
krb5-libs-1.21.3-3.fc42.x86_64
libacl-2.3.2-2.fc41.x86_64
libarchive-3.7.7-1.fc42.x86_64
libattr-2.5.2-4.fc41.x86_64
libblkid-2.40.2-8.fc42.x86_64
libbrotli-1.1.0-5.fc41.x86_64
libcap-2.71-1.fc42.x86_64
libcap-ng-0.8.5-3.fc41.x86_64
libcom_err-1.47.1-6.fc42.x86_64
libcurl-8.10.1-2.fc42.x86_64
libeconf-0.7.4-3.fc42.x86_64
libevent-2.1.12-14.fc41.x86_64
libfdisk-2.40.2-8.fc42.x86_64
libffi-3.4.6-3.fc42.x86_64
libgcc-14.2.1-6.fc42.x86_64
libgomp-14.2.1-6.fc42.x86_64
libidn2-2.3.7-2.fc41.x86_64
libmount-2.40.2-8.fc42.x86_64
libnghttp2-1.64.0-1.fc42.x86_64
libnsl2-2.0.1-2.fc41.x86_64
libpkgconf-2.3.0-1.fc42.x86_64
libpsl-0.21.5-4.fc41.x86_64
libpwquality-1.4.5-11.fc41.x86_64
libselinux-3.8-0.rc1.2.fc42.x86_64
libsemanage-3.8-0.rc1.1.fc42.x86_64
libsepol-3.8-0.rc1.1.fc42.x86_64
libsmartcols-2.40.2-8.fc42.x86_64
libssh-0.11.1-1.fc42.x86_64
libssh-config-0.11.1-1.fc42.noarch
libstdc++-14.2.1-6.fc42.x86_64
libtasn1-4.19.0-9.fc41.x86_64
libtirpc-1.3.6-1.fc42.x86_64
libtool-ltdl-2.5.4-1.fc42.x86_64
libunistring-1.1-8.fc41.x86_64
libuuid-2.40.2-8.fc42.x86_64
libverto-0.3.2-9.fc41.x86_64
libxcrypt-4.4.36-11.fc42.x86_64
libxml2-2.12.8-2.fc41.x86_64
libzstd-1.5.6-2.fc41.x86_64
lua-libs-5.4.7-1.fc42.x86_64
lua-srpm-macros-1-14.fc41.noarch
lz4-libs-1.10.0-1.fc41.x86_64
mpfr-4.2.1-5.fc41.x86_64
ncurses-base-6.5-2.20240629.fc41.noarch
ncurses-libs-6.5-2.20240629.fc41.x86_64
ocaml-srpm-macros-10-3.fc41.noarch
openblas-srpm-macros-2-18.fc41.noarch
openldap-2.6.8-6.fc42.x86_64
openssl-libs-3.2.2-8.fc42.x86_64
p11-kit-0.25.5-4.fc42.x86_64
p11-kit-trust-0.25.5-4.fc42.x86_64
package-notes-srpm-macros-0.5-12.fc41.noarch
pam-1.7.0-3.fc42.x86_64
pam-libs-1.7.0-3.fc42.x86_64
patch-2.7.6-25.fc41.x86_64
pcre2-10.44-1.fc41.1.x86_64
pcre2-syntax-10.44-1.fc41.1.noarch
perl-srpm-macros-1-56.fc41.noarch
pkgconf-2.3.0-1.fc42.x86_64
pkgconf-m4-2.3.0-1.fc42.noarch
pkgconf-pkg-config-2.3.0-1.fc42.x86_64
popt-1.19-7.fc41.x86_64
publicsuffix-list-dafsa-20240107-4.fc41.noarch
pyproject-srpm-macros-1.16.3-1.fc42.noarch
python-srpm-macros-3.13-3.fc41.noarch
qt5-srpm-macros-5.15.15-1.fc42.noarch
qt6-srpm-macros-6.8.1-3.fc42.noarch
readline-8.2-11.fc42.x86_64
redhat-rpm-config-296-1.fc42.noarch
rpm-4.20.0-1.fc42.x86_64
rpm-build-4.20.0-1.fc42.x86_64
rpm-build-libs-4.20.0-1.fc42.x86_64
rpm-libs-4.20.0-1.fc42.x86_64
rpm-sequoia-1.7.0-3.fc42.x86_64
rust-srpm-macros-26.3-3.fc42.noarch
sed-4.9-3.fc41.x86_64
setup-2.15.0-5.fc41.noarch
shadow-utils-4.16.0-7.fc42.x86_64
sqlite-libs-3.47.1-1.fc42.x86_64
systemd-libs-257~rc3-1.fc42.x86_64
tar-1.35-4.fc41.x86_64
unzip-6.0-65.fc42.x86_64
util-linux-2.40.2-8.fc42.x86_64
util-linux-core-2.40.2-8.fc42.x86_64
which-2.21-42.fc41.x86_64
xxhash-libs-0.8.2-4.fc42.x86_64
xz-5.6.3-2.fc42.x86_64
xz-libs-5.6.3-2.fc42.x86_64
zig-srpm-macros-1-3.fc41.noarch
zip-3.0-41.fc41.x86_64
zlib-ng-compat-2.2.2-1.fc42.x86_64
zstd-1.5.6-2.fc41.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1733788800
Wrote: /builddir/build/SRPMS/bout++-5.2.0.dev574+ge3f21cd2f-1.fc42.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1733832619.107295/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-prji1mfa/bout++/bout++.spec) Config(child) 0 minutes 18 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/bout++-5.2.0.dev574+ge3f21cd2f-1.fc42.src.rpm)  Config(fedora-rawhide-x86_64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1733832619.107295/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1733832619.107295/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1733832619.107295/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.20.0-1.fc42.x86_64
  rpm-sequoia-1.7.0-3.fc42.x86_64
  dnf5-5.2.8.1-1.fc42.x86_64
  dnf5-plugins-5.2.8.1-1.fc42.x86_64
Finish: chroot init
Start: build phase for bout++-5.2.0.dev574+ge3f21cd2f-1.fc42.src.rpm
Start: build setup for bout++-5.2.0.dev574+ge3f21cd2f-1.fc42.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1733788800
Wrote: /builddir/build/SRPMS/bout++-5.2.0.dev574+ge3f21cd2f-1.fc42.src.rpm
Updating and loading repositories:
 Copr repository                        100% | 108.5 KiB/s |   1.5 KiB |  00m00s
 Additional repo copr_sagitter_ForTesti 100% | 178.5 KiB/s |   2.1 KiB |  00m00s
 fedora                                 100% | 911.2 KiB/s |  24.6 KiB |  00m00s
Repositories loaded.
Package                               Arch   Version                           Repository                    Size
Installing:
 chrpath                              x86_64 0.16-24.fc41                      fedora                    54.6 KiB
 cmake                                x86_64 3.31.2-1.fc42                     fedora                    32.9 MiB
 doxygen                              x86_64 2:1.12.0-3.fc42                   fedora                    19.2 MiB
 environment-modules                  x86_64 5.5.0-1.fc42                      fedora                     1.8 MiB
 fftw-devel                           x86_64 3.3.10-13.fc41                    fedora                   284.2 KiB
 flexiblas-devel                      x86_64 3.4.4-3.fc41                      fedora                     4.8 MiB
 fmt-devel                            x86_64 11.0.2-2.fc42                     fedora                   575.3 KiB
 gcc-c++                              x86_64 14.2.1-6.fc42                     fedora                    38.1 MiB
 gdb                                  x86_64 15.2-3.fc42                       fedora                   445.3 KiB
 gettext-devel                        x86_64 0.22.5-6.fc41                     fedora                     1.0 MiB
 hdf5-devel                           x86_64 1.14.5-1.fc42                     fedora                     3.3 MiB
 hdf5-mpich-devel                     x86_64 1.14.5-1.fc42                     fedora                     3.1 MiB
 hdf5-openmpi-devel                   x86_64 1.14.5-1.fc42                     fedora                     3.1 MiB
 m4                                   x86_64 1.4.19-10.fc41                    fedora                   592.9 KiB
 make                                 x86_64 1:4.4.1-9.fc42                    fedora                     1.8 MiB
 mpark-variant-devel                  x86_64 1.4.0-13.fc41                     fedora                   117.1 KiB
 mpich-devel                          x86_64 4.2.2-1.fc42                      fedora                     2.0 MiB
 netcdf-cxx4-devel                    x86_64 4.3.1-13.fc41                     fedora                   459.0 KiB
 netcdf-devel                         x86_64 4.9.2-7.fc42                      fedora                   368.7 KiB
 openmpi-devel                        x86_64 5.0.6-1.fc42                      fedora                     3.2 MiB
 petsc-mpich-devel                    x86_64 3.22.2-1.fc42                     copr_sagitter_ForTesting  10.7 MiB
 petsc-openmpi-devel                  x86_64 3.22.2-1.fc42                     copr_sagitter_ForTesting  11.2 MiB
 python3                              x86_64 3.13.0-1.fc42                     fedora                    31.8 KiB
 python3-boutdata                     noarch 0.2.1-7.fc41                      fedora                   545.5 KiB
 python3-boututils                    noarch 0.2.1-6.fc41                      fedora                   435.6 KiB
 python3-cython                       x86_64 3.0.11-1.fc41                     fedora                    18.1 MiB
 python3-devel                        x86_64 3.13.0-1.fc42                     fedora                     1.8 MiB
 python3-jinja2                       noarch 3.1.4-5.fc41                      fedora                     2.9 MiB
 python3-netcdf4                      x86_64 1.7.2-1.fc42                      fedora                     2.4 MiB
 python3-numpy                        x86_64 1:1.26.4-8.fc41                   fedora                    43.8 MiB
 python3-scipy                        x86_64 1.14.1-1.fc42                     fedora                    67.1 MiB
 python3-sphinx                       noarch 1:7.3.7-2.fc41                    fedora                    10.8 MiB
 python3-tables                       x86_64 3.10.1-3.fc42                     fedora                    10.1 MiB
 python3-zoidberg                     noarch 0.1.1-8.fc42                      fedora                   508.6 KiB
 sundials-debuginfo                   x86_64 7.1.1-1.fc42                      copr_sagitter_ForTesting   8.3 MiB
 sundials-debugsource                 x86_64 7.1.1-1.fc42                      copr_sagitter_ForTesting  22.1 MiB
 sundials-devel                       x86_64 7.1.1-1.fc42                      copr_sagitter_ForTesting   6.4 MiB
 sundials-mpich-debuginfo             x86_64 7.1.1-1.fc42                      copr_sagitter_ForTesting   8.3 MiB
 sundials-mpich-devel                 x86_64 7.1.1-1.fc42                      copr_sagitter_ForTesting   6.6 MiB
 sundials-openmpi-debuginfo           x86_64 7.1.1-1.fc42                      copr_sagitter_ForTesting   8.3 MiB
 sundials-openmpi-devel               x86_64 7.1.1-1.fc42                      copr_sagitter_ForTesting   6.7 MiB
 zlib-ng-compat-devel                 x86_64 2.2.2-1.fc42                      fedora                   106.8 KiB
Installing dependencies:
 MUMPS-common                         noarch 5.7.3-1.fc42                      copr_sagitter_ForTesting 988.4 KiB
 MUMPS-mpich                          x86_64 5.7.3-1.fc42                      copr_sagitter_ForTesting   9.7 MiB
 MUMPS-openmpi                        x86_64 5.7.3-1.fc42                      copr_sagitter_ForTesting   9.7 MiB
 SuperLUMT-common                     noarch 4.0.1-3.fc41                      fedora                   679.2 KiB
 SuperLUMT64-double                   x86_64 4.0.1-3.fc41                      fedora                   161.2 KiB
 abattis-cantarell-vf-fonts           noarch 0.301-13.fc41                     fedora                   192.7 KiB
 adobe-mappings-cmap                  noarch 20231115-1.fc42                   fedora                    15.2 MiB
 adobe-mappings-cmap-deprecated       noarch 20231115-1.fc42                   fedora                   582.1 KiB
 adobe-mappings-pdf                   noarch 20190401-8.fc41                   fedora                     4.4 MiB
 annobin-docs                         noarch 12.77-1.fc42                      fedora                    98.4 KiB
 annobin-plugin-gcc                   x86_64 12.77-1.fc42                      fedora                   991.3 KiB
 avahi-libs                           x86_64 0.8-30.fc42                       fedora                   174.2 KiB
 blosc                                x86_64 1.21.6-1.fc42                     fedora                   130.3 KiB
 blosc2                               x86_64 2.15.1-1.fc42                     fedora                   552.3 KiB
 boost-regex                          x86_64 1.83.0-9.fc42                     fedora                   267.7 KiB
 brotli                               x86_64 1.1.0-5.fc41                      fedora                    31.8 KiB
 brotli-devel                         x86_64 1.1.0-5.fc41                      fedora                    65.6 KiB
 cairo                                x86_64 1.18.2-2.fc42                     fedora                     1.7 MiB
 cairo-gobject                        x86_64 1.18.2-2.fc42                     fedora                    34.1 KiB
 cmake-data                           noarch 3.31.2-1.fc42                     fedora                     8.5 MiB
 cmake-filesystem                     x86_64 3.31.2-1.fc42                     fedora                     0.0   B
 cmake-rpm-macros                     noarch 3.31.2-1.fc42                     fedora                     7.5 KiB
 cpp                                  x86_64 14.2.1-6.fc42                     fedora                    35.0 MiB
 ctags                                x86_64 6.1.0-1.fc42                      fedora                     2.1 MiB
 cups-filesystem                      noarch 1:2.4.11-8.fc42                   fedora                     0.0   B
 cups-libs                            x86_64 1:2.4.11-8.fc42                   fedora                   613.9 KiB
 dbus                                 x86_64 1:1.14.10-4.fc41                  fedora                     0.0   B
 dbus-broker                          x86_64 36-4.fc41                         fedora                   382.8 KiB
 dbus-common                          noarch 1:1.14.10-4.fc41                  fedora                    11.2 KiB
 dbus-libs                            x86_64 1:1.14.10-4.fc41                  fedora                   368.9 KiB
 default-fonts-core-sans              noarch 4.2-2.fc42                        fedora                    11.9 KiB
 dejavu-sans-fonts                    noarch 2.37-24.fc41                      fedora                     5.5 MiB
 emacs-filesystem                     noarch 1:30.0-3.fc41                     fedora                     0.0   B
 expat                                x86_64 2.6.4-1.fc42                      fedora                   285.5 KiB
 fftw                                 x86_64 3.3.10-13.fc41                    fedora                   182.6 KiB
 fftw-libs                            x86_64 3.3.10-13.fc41                    fedora                     0.0   B
 fftw-libs-double                     x86_64 3.3.10-13.fc41                    fedora                     3.4 MiB
 fftw-libs-long                       x86_64 3.3.10-13.fc41                    fedora                     1.5 MiB
 fftw-libs-quad                       x86_64 3.3.10-13.fc41                    fedora                     2.5 MiB
 fftw-libs-single                     x86_64 3.3.10-13.fc41                    fedora                     3.6 MiB
 flexiblas                            x86_64 3.4.4-3.fc41                      fedora                    48.5 KiB
 flexiblas-netlib                     x86_64 3.4.4-3.fc41                      fedora                    10.7 MiB
 flexiblas-netlib64                   x86_64 3.4.4-3.fc41                      fedora                    10.8 MiB
 flexiblas-openblas-openmp            x86_64 3.4.4-3.fc41                      fedora                    43.3 KiB
 flexiblas-openblas-openmp64          x86_64 3.4.4-3.fc41                      fedora                    43.3 KiB
 fmt                                  x86_64 11.0.2-2.fc42                     fedora                   264.1 KiB
 fontconfig                           x86_64 2.15.0-8.fc41                     fedora                   791.9 KiB
 fonts-filesystem                     noarch 1:2.0.5-17.fc41                   fedora                     0.0   B
 freetype                             x86_64 2.13.3-1.fc42                     fedora                   850.5 KiB
 fribidi                              x86_64 1.0.16-1.fc42                     fedora                   194.5 KiB
 gcc                                  x86_64 14.2.1-6.fc42                     fedora                   104.3 MiB
 gcc-gfortran                         x86_64 14.2.1-6.fc42                     fedora                    37.2 MiB
 gcc-plugin-annobin                   x86_64 14.2.1-6.fc42                     fedora                    57.6 KiB
 gd                                   x86_64 2.3.3-17.fc41                     fedora                   403.7 KiB
 gdb-headless                         x86_64 15.2-3.fc42                       fedora                    15.3 MiB
 gdk-pixbuf2                          x86_64 2.42.12-6.fc41                    fedora                     2.5 MiB
 gettext                              x86_64 0.22.5-6.fc41                     fedora                     5.2 MiB
 gettext-common-devel                 noarch 0.22.5-6.fc41                     fedora                   586.5 KiB
 gettext-envsubst                     x86_64 0.22.5-6.fc41                     fedora                    74.9 KiB
 gettext-libs                         x86_64 0.22.5-6.fc41                     fedora                     1.7 MiB
 gettext-runtime                      x86_64 0.22.5-6.fc41                     fedora                   481.3 KiB
 glib2                                x86_64 2.83.0-2.fc42                     fedora                    14.7 MiB
 glibc-devel                          x86_64 2.40.9000-21.fc42                 fedora                     2.3 MiB
 gnupg2                               x86_64 2.4.5-4.fc42                      fedora                     9.6 MiB
 gnutls                               x86_64 3.8.8-1.fc42                      fedora                     3.2 MiB
 google-droid-sans-fonts              noarch 20200215-21.fc41                  fedora                     6.3 MiB
 google-noto-fonts-common             noarch 20240901-1.fc42                   fedora                    17.5 KiB
 google-noto-sans-vf-fonts            noarch 20240901-1.fc42                   fedora                     1.2 MiB
 gpgme                                x86_64 1.24.0-1.fc42                     fedora                   586.7 KiB
 gpgmepp                              x86_64 1.24.0-1.fc42                     fedora                   428.6 KiB
 graphite2                            x86_64 1.3.14-16.fc41                    fedora                   192.0 KiB
 graphviz                             x86_64 12.2.0-1.fc42                     fedora                    20.8 MiB
 graphviz-libs                        x86_64 12.2.0-1.fc42                     fedora                     1.2 MiB
 groff-base                           x86_64 1.23.0-7.fc41                     fedora                     3.8 MiB
 gts                                  x86_64 0.7.6-49.20121130.fc41            fedora                   650.2 KiB
 harfbuzz                             x86_64 10.1.0-2.fc42                     fedora                     2.7 MiB
 hdf-libs                             x86_64 4.3.0-1.fc42                      fedora                   699.3 KiB
 hdf5                                 x86_64 1.14.5-1.fc42                     fedora                     7.1 MiB
 hdf5-mpich                           x86_64 1.14.5-1.fc42                     fedora                     7.1 MiB
 hdf5-openmpi                         x86_64 1.14.5-1.fc42                     fedora                     7.1 MiB
 hwloc-libs                           x86_64 2.11.2-1.fc42                     fedora                     2.9 MiB
 hypre-mpich                          x86_64 2.32.0-1.fc42                     copr_sagitter_ForTesting   4.8 MiB
 hypre-openmpi                        x86_64 2.32.0-1.fc42                     copr_sagitter_ForTesting   4.8 MiB
 jbig2dec-libs                        x86_64 0.20-5.fc41                       fedora                   169.0 KiB
 jbigkit-libs                         x86_64 2.1-30.fc41                       fedora                   117.6 KiB
 jsoncpp                              x86_64 1.9.5-8.fc41                      fedora                   253.4 KiB
 kernel-headers                       x86_64 6.13.0-0.rc1.e70140ba0d2b.14.fc42 fedora                     6.5 MiB
 lasi                                 x86_64 1.1.3-14.fc41                     fedora                   130.8 KiB
 lcms2                                x86_64 2.16-4.fc41                       fedora                   424.9 KiB
 less                                 x86_64 668-1.fc42                        fedora                   406.4 KiB
 libICE                               x86_64 1.1.1-4.fc41                      fedora                   181.2 KiB
 libSM                                x86_64 1.2.4-4.fc41                      fedora                    97.3 KiB
 libX11                               x86_64 1.8.10-2.fc42                     fedora                     1.3 MiB
 libX11-common                        noarch 1.8.10-2.fc42                     fedora                     1.1 MiB
 libXau                               x86_64 1.0.11-7.fc41                     fedora                    66.9 KiB
 libXext                              x86_64 1.3.6-2.fc41                      fedora                    90.1 KiB
 libXft                               x86_64 2.3.8-7.fc41                      fedora                   164.5 KiB
 libXpm                               x86_64 3.5.17-4.fc41                     fedora                   148.4 KiB
 libXrender                           x86_64 0.9.11-7.fc41                     fedora                    50.1 KiB
 libXt                                x86_64 1.3.1-1.fc42                      fedora                   432.9 KiB
 libaec                               x86_64 1.1.3-1.fc42                      fedora                    98.1 KiB
 libaec-devel                         x86_64 1.1.3-1.fc42                      fedora                    12.5 KiB
 libaom                               x86_64 3.9.0-3.fc41                      fedora                     5.1 MiB
 libassuan                            x86_64 2.5.7-2.fc41                      fedora                   163.8 KiB
 libavif                              x86_64 1.0.4-7.fc41                      fedora                   183.8 KiB
 libb2                                x86_64 0.98.1-12.fc41                    fedora                    42.2 KiB
 libbabeltrace                        x86_64 1.5.11-9.fc41                     fedora                   519.3 KiB
 libcbor                              x86_64 0.11.0-2.fc41                     fedora                    73.9 KiB
 libcurl-devel                        x86_64 8.10.1-2.fc42                     fedora                     1.3 MiB
 libdatrie                            x86_64 0.2.13-10.fc41                    fedora                    57.9 KiB
 libdav1d                             x86_64 1.5.0-1.fc42                      fedora                     1.7 MiB
 libedit                              x86_64 3.1-53.20240808cvs.fc41           fedora                   244.1 KiB
 libfabric                            x86_64 1.22.0-1.fc41                     fedora                     5.2 MiB
 libfido2                             x86_64 1.15.0-2.fc41                     fedora                   238.2 KiB
 libgcrypt                            x86_64 1.11.0-4.fc42                     fedora                     1.5 MiB
 libgfortran                          x86_64 14.2.1-6.fc42                     fedora                     3.0 MiB
 libgpg-error                         x86_64 1.51-1.fc42                       fedora                   887.2 KiB
 libgs                                x86_64 10.04.0-1.fc42                    fedora                    23.4 MiB
 libibverbs                           x86_64 54.0-3.fc42                       fedora                     1.2 MiB
 libicu                               x86_64 76.1-1.fc42                       fedora                    36.2 MiB
 libidn2-devel                        x86_64 2.3.7-2.fc41                      fedora                   252.1 KiB
 libijs                               x86_64 0.35-23.fc41                      fedora                    61.6 KiB
 libimagequant                        x86_64 4.0.3-5.fc41                      fedora                   666.7 KiB
 libipt                               x86_64 2.1.1-2.fc41                      fedora                   113.4 KiB
 libjpeg-turbo                        x86_64 3.0.4-1.fc42                      fedora                   789.1 KiB
 libksba                              x86_64 1.6.7-2.fc41                      fedora                   398.4 KiB
 liblerc                              x86_64 4.0.0-7.fc41                      fedora                   607.5 KiB
 libmpc                               x86_64 1.3.1-6.fc41                      fedora                   164.7 KiB
 libnghttp2-devel                     x86_64 1.64.0-1.fc42                     fedora                   295.4 KiB
 libnl3                               x86_64 3.11.0-1.fc42                     fedora                     1.0 MiB
 libpaper                             x86_64 1:2.1.1-7.fc41                    fedora                    48.9 KiB
 libpipeline                          x86_64 1.5.8-1.fc42                      fedora                   149.1 KiB
 libpng                               x86_64 2:1.6.44-1.fc42                   fedora                   245.8 KiB
 libpsl-devel                         x86_64 0.21.5-4.fc41                     fedora                   110.3 KiB
 libpsm2                              x86_64 12.0.1-1.fc42                     fedora                   440.0 KiB
 libqhull_r                           x86_64 1:8.0.2-5.fc41                    fedora                   483.4 KiB
 libquadmath                          x86_64 14.2.1-6.fc42                     fedora                   325.9 KiB
 libquadmath-devel                    x86_64 14.2.1-6.fc42                     fedora                    21.9 KiB
 libraqm                              x86_64 0.10.1-1.fc42                     fedora                    32.7 KiB
 librdmacm                            x86_64 54.0-3.fc42                       fedora                   155.0 KiB
 librsvg2                             x86_64 2.59.2-1.fc42                     fedora                     4.6 MiB
 libseccomp                           x86_64 2.5.5-2.fc41                      fedora                   173.3 KiB
 libssh-devel                         x86_64 0.11.1-1.fc42                     fedora                   177.8 KiB
 libstdc++-devel                      x86_64 14.2.1-6.fc42                     fedora                    15.4 MiB
 libtextstyle                         x86_64 0.22.5-6.fc41                     fedora                   195.6 KiB
 libthai                              x86_64 0.1.29-9.fc41                     fedora                   783.5 KiB
 libtiff                              x86_64 4.7.0-2.fc42                      fedora                   620.0 KiB
 libuv                                x86_64 1:1.49.2-1.fc42                   fedora                   569.4 KiB
 libvmaf                              x86_64 3.0.0-2.fc41                      fedora                   823.0 KiB
 libwebp                              x86_64 1.4.0-4.fc41                      fedora                   822.6 KiB
 libxcb                               x86_64 1.17.0-3.fc42                     fedora                     1.2 MiB
 libxcrypt-devel                      x86_64 4.4.36-11.fc42                    fedora                    30.5 KiB
 libyaml                              x86_64 0.2.5-15.fc41                     fedora                   134.4 KiB
 logrotate                            x86_64 3.22.0-2.fc41                     fedora                   153.1 KiB
 lzo                                  x86_64 2.10-13.fc41                      fedora                   166.9 KiB
 man-db                               x86_64 2.13.0-1.fc42                     fedora                     2.8 MiB
 metis                                x86_64 5.1.0.3-6.fc41                    fedora                   985.2 KiB
 mpdecimal                            x86_64 2.5.1-16.fc41                     fedora                   204.9 KiB
 mpich                                x86_64 4.2.2-1.fc42                      fedora                     7.0 MiB
 munge                                x86_64 0.5.16-3.fc41                     fedora                   346.3 KiB
 munge-libs                           x86_64 0.5.16-3.fc41                     fedora                    32.1 KiB
 ncurses                              x86_64 6.5-2.20240629.fc41               fedora                   627.3 KiB
 netcdf                               x86_64 4.9.2-7.fc42                      fedora                     2.4 MiB
 netcdf-cxx4                          x86_64 4.3.1-13.fc41                     fedora                   317.0 KiB
 netpbm                               x86_64 11.02.00-7.fc41                   fedora                   577.1 KiB
 nettle                               x86_64 3.10-3.fc41                       fedora                   793.0 KiB
 npth                                 x86_64 1.8-1.fc42                        fedora                    53.6 KiB
 nspr                                 x86_64 4.36.0-1.fc42                     fedora                   322.4 KiB
 nss                                  x86_64 3.106.0-1.fc42                    fedora                     1.9 MiB
 nss-softokn                          x86_64 3.106.0-1.fc42                    fedora                     1.9 MiB
 nss-softokn-freebl                   x86_64 3.106.0-1.fc42                    fedora                   845.7 KiB
 nss-sysinit                          x86_64 3.106.0-1.fc42                    fedora                    22.3 KiB
 nss-util                             x86_64 3.106.0-1.fc42                    fedora                   206.7 KiB
 numactl-libs                         x86_64 2.0.19-1.fc42                     fedora                    54.4 KiB
 openblas                             x86_64 0.3.28-2.fc42                     fedora                   106.6 KiB
 openblas-openmp                      x86_64 0.3.28-2.fc42                     fedora                    39.3 MiB
 openblas-openmp64                    x86_64 0.3.28-2.fc42                     fedora                    39.5 MiB
 openblas-serial                      x86_64 0.3.28-2.fc42                     fedora                    37.8 MiB
 openjpeg                             x86_64 2.5.2-4.fc42                      fedora                   445.7 KiB
 openmpi                              x86_64 5.0.6-1.fc42                      fedora                     7.0 MiB
 openssh                              x86_64 9.9p1-5.fc42                      fedora                     1.4 MiB
 openssh-clients                      x86_64 9.9p1-5.fc42                      fedora                     2.7 MiB
 openssl-devel                        x86_64 1:3.2.2-8.fc42                    fedora                     4.3 MiB
 orangefs                             x86_64 2.9.8-12.fc41                     fedora                     3.1 MiB
 pango                                x86_64 1.54.0-2.fc41                     fedora                   996.2 KiB
 perl-AutoLoader                      noarch 5.74-512.fc42                     fedora                    20.5 KiB
 perl-B                               x86_64 1.89-512.fc42                     fedora                   498.0 KiB
 perl-Carp                            noarch 1.54-511.fc41                     fedora                    46.6 KiB
 perl-Class-Struct                    noarch 0.68-512.fc42                     fedora                    25.4 KiB
 perl-Data-Dumper                     x86_64 2.189-512.fc41                    fedora                   111.7 KiB
 perl-Digest                          noarch 1.20-511.fc41                     fedora                    35.3 KiB
 perl-Digest-MD5                      x86_64 2.59-5.fc41                       fedora                    59.8 KiB
 perl-DynaLoader                      x86_64 1.56-512.fc42                     fedora                    32.1 KiB
 perl-Encode                          x86_64 4:3.21-511.fc41                   fedora                     4.7 MiB
 perl-Errno                           x86_64 1.38-512.fc42                     fedora                     8.4 KiB
 perl-Exporter                        noarch 5.78-511.fc41                     fedora                    54.3 KiB
 perl-Fcntl                           x86_64 1.18-512.fc42                     fedora                    49.0 KiB
 perl-File-Basename                   noarch 2.86-512.fc42                     fedora                    14.0 KiB
 perl-File-Path                       noarch 2.18-511.fc41                     fedora                    63.5 KiB
 perl-File-Temp                       noarch 1:0.231.100-511.fc41              fedora                   162.3 KiB
 perl-File-stat                       noarch 1.14-512.fc42                     fedora                    12.5 KiB
 perl-FileHandle                      noarch 2.05-512.fc42                     fedora                     9.3 KiB
 perl-Getopt-Long                     noarch 1:2.58-2.fc41                     fedora                   144.5 KiB
 perl-Getopt-Std                      noarch 1.14-512.fc42                     fedora                    11.2 KiB
 perl-HTTP-Tiny                       noarch 0.090-1.fc42                      fedora                   154.4 KiB
 perl-IO                              x86_64 1.55-512.fc42                     fedora                   151.1 KiB
 perl-IO-Socket-IP                    noarch 0.43-1.fc42                       fedora                   100.3 KiB
 perl-IO-Socket-SSL                   noarch 2.089-1.fc42                      fedora                   703.3 KiB
 perl-IPC-Open3                       noarch 1.22-512.fc42                     fedora                    22.5 KiB
 perl-MIME-Base32                     noarch 1.303-21.fc41                     fedora                    30.7 KiB
 perl-MIME-Base64                     x86_64 3.16-511.fc41                     fedora                    46.1 KiB
 perl-Net-SSLeay                      x86_64 1.94-7.fc41                       fedora                     1.3 MiB
 perl-POSIX                           x86_64 2.20-512.fc42                     fedora                   235.1 KiB
 perl-PathTools                       x86_64 3.91-511.fc41                     fedora                   180.0 KiB
 perl-Pod-Escapes                     noarch 1:1.07-511.fc41                   fedora                    24.9 KiB
 perl-Pod-Perldoc                     noarch 3.28.01-512.fc41                  fedora                   163.7 KiB
 perl-Pod-Simple                      noarch 1:3.45-511.fc41                   fedora                   560.9 KiB
 perl-Pod-Usage                       noarch 4:2.03-511.fc41                   fedora                    84.8 KiB
 perl-Scalar-List-Utils               x86_64 5:1.68-1.fc42                     fedora                   148.9 KiB
 perl-SelectSaver                     noarch 1.02-512.fc42                     fedora                     2.2 KiB
 perl-Socket                          x86_64 4:2.038-511.fc41                  fedora                   124.0 KiB
 perl-Storable                        x86_64 1:3.32-511.fc41                   fedora                   232.4 KiB
 perl-Symbol                          noarch 1.09-512.fc42                     fedora                     6.8 KiB
 perl-Term-ANSIColor                  noarch 5.01-512.fc41                     fedora                    97.5 KiB
 perl-Term-Cap                        noarch 1.18-511.fc41                     fedora                    29.3 KiB
 perl-Text-ParseWords                 noarch 3.31-511.fc41                     fedora                    13.6 KiB
 perl-Text-Tabs+Wrap                  noarch 2024.001-511.fc41                 fedora                    22.6 KiB
 perl-Time-Local                      noarch 2:1.350-511.fc41                  fedora                    69.0 KiB
 perl-URI                             noarch 5.31-1.fc42                       fedora                   257.0 KiB
 perl-base                            noarch 2.27-512.fc42                     fedora                    12.5 KiB
 perl-constant                        noarch 1.33-512.fc41                     fedora                    26.2 KiB
 perl-if                              noarch 0.61.000-512.fc42                 fedora                     5.8 KiB
 perl-interpreter                     x86_64 4:5.40.0-512.fc42                 fedora                   122.3 KiB
 perl-libnet                          noarch 3.15-512.fc41                     fedora                   289.4 KiB
 perl-libs                            x86_64 4:5.40.0-512.fc42                 fedora                     9.9 MiB
 perl-locale                          noarch 1.12-512.fc42                     fedora                     6.5 KiB
 perl-mro                             x86_64 1.29-512.fc42                     fedora                    45.6 KiB
 perl-overload                        noarch 1.37-512.fc42                     fedora                    71.5 KiB
 perl-overloading                     noarch 0.02-512.fc42                     fedora                     4.8 KiB
 perl-parent                          noarch 1:0.243-1.fc42                    fedora                    10.2 KiB
 perl-podlators                       noarch 1:6.0.2-2.fc41                    fedora                   317.5 KiB
 perl-vars                            noarch 1.05-512.fc42                     fedora                     3.9 KiB
 petsc-mpich                          x86_64 3.22.2-1.fc42                     copr_sagitter_ForTesting  24.3 MiB
 petsc-openmpi                        x86_64 3.22.2-1.fc42                     copr_sagitter_ForTesting  24.5 MiB
 pixman                               x86_64 0.44.2-1.fc42                     fedora                   664.5 KiB
 pmix                                 x86_64 4.2.8-3.fc41                      fedora                     2.0 MiB
 poppler                              x86_64 24.08.0-1.fc42                    fedora                     3.6 MiB
 poppler-data                         noarch 0.4.11-8.fc41                     fedora                    12.3 MiB
 poppler-glib                         x86_64 24.08.0-1.fc42                    fedora                   586.9 KiB
 procps-ng                            x86_64 4.0.4-4.fc41                      fedora                     1.0 MiB
 prrte                                x86_64 3.0.6-1.fc42                      fedora                   174.9 KiB
 prrte-libs                           x86_64 3.0.6-1.fc42                      fedora                     1.7 MiB
 ptscotch-mpich                       x86_64 7.0.6-1.fc42                      fedora                     1.1 MiB
 ptscotch-mpich-devel                 x86_64 7.0.6-1.fc42                      fedora                   100.2 KiB
 ptscotch-mpich-devel-parmetis        x86_64 7.0.6-1.fc42                      fedora                    37.9 KiB
 ptscotch-openmpi                     x86_64 7.0.6-1.fc42                      fedora                     1.1 MiB
 publicsuffix-list                    noarch 20240107-4.fc41                   fedora                   318.0 KiB
 pyproject-rpm-macros                 noarch 1.16.3-1.fc42                     fedora                   113.7 KiB
 python-pip-wheel                     noarch 24.3.1-1.fc42                     fedora                     1.2 MiB
 python-rpm-macros                    noarch 3.13-3.fc41                       fedora                    22.1 KiB
 python3-babel                        noarch 2.16.0-1.fc42                     fedora                    28.3 MiB
 python3-blosc2                       x86_64 2.7.1-1.fc42                      fedora                     1.1 MiB
 python3-cairo                        x86_64 1.25.1-5.fc41                     fedora                   492.5 KiB
 python3-certifi                      noarch 2024.08.30-1.fc42                 fedora                     6.8 KiB
 python3-cftime                       x86_64 1.6.4-1.fc41                      fedora                   632.4 KiB
 python3-charset-normalizer           noarch 3.4.0-1.fc42                      fedora                   319.9 KiB
 python3-contourpy                    x86_64 1.3.1-1.fc42                      fedora                   821.5 KiB
 python3-cpuinfo                      noarch 9.0.0-10.fc42                     fedora                   307.8 KiB
 python3-cycler                       noarch 0.11.0-13.fc41                    fedora                    37.6 KiB
 python3-dateutil                     noarch 1:2.8.2-16.fc41                   fedora                   879.2 KiB
 python3-docutils                     noarch 0.21.2-1.fc42                     fedora                     4.9 MiB
 python3-fonttools                    x86_64 4.55.2-1.fc42                     fedora                    18.0 MiB
 python3-idna                         noarch 3.10-1.fc42                       fedora                   628.0 KiB
 python3-imagesize                    noarch 1.4.1-9.fc41                      fedora                    35.3 KiB
 python3-kiwisolver                   x86_64 1.4.7-1.fc42                      fedora                   153.9 KiB
 python3-libs                         x86_64 3.13.0-1.fc42                     fedora                    40.4 MiB
 python3-markupsafe                   x86_64 3.0.2-1.fc42                      fedora                    56.1 KiB
 python3-matplotlib                   x86_64 3.9.3-1.fc42                      fedora                    20.9 MiB
 python3-matplotlib-data              noarch 3.9.3-1.fc42                      fedora                   726.7 KiB
 python3-matplotlib-data-fonts        noarch 3.9.3-1.fc42                      fedora                     7.9 MiB
 python3-matplotlib-tk                x86_64 3.9.3-1.fc42                      fedora                   256.4 KiB
 python3-mpmath                       noarch 1.3.0-10.fc41                     fedora                     5.2 MiB
 python3-msgpack                      x86_64 1.1.0-1.fc42                      fedora                   330.0 KiB
 python3-natsort                      noarch 8.4.0-2.fc41                      fedora                   252.8 KiB
 python3-ndindex                      x86_64 1.7-13.fc41                       fedora                     2.9 MiB
 python3-numexpr                      x86_64 2.8.5-7.fc41                      fedora                   574.8 KiB
 python3-numpy-f2py                   x86_64 1:1.26.4-8.fc41                   fedora                     2.8 MiB
 python3-olefile                      noarch 0.47-5.fc41                       fedora                   340.4 KiB
 python3-packaging                    noarch 24.2-2.fc42                       fedora                   555.7 KiB
 python3-pillow                       x86_64 11.0.0-1.fc42                     fedora                     3.9 MiB
 python3-pillow-tk                    x86_64 11.0.0-1.fc42                     fedora                    73.0 KiB
 python3-platformdirs                 noarch 4.2.2-2.fc41                      fedora                   168.6 KiB
 python3-pooch                        noarch 1.8.2-3.fc41                      fedora                   625.5 KiB
 python3-pygments                     noarch 2.18.0-2.fc42                     fedora                    10.6 MiB
 python3-pyparsing                    noarch 3.1.2-7.fc41                      fedora                     1.0 MiB
 python3-requests                     noarch 2.32.3-3.fc41                     fedora                   485.9 KiB
 python3-rpm-generators               noarch 14-11.fc41                        fedora                    81.7 KiB
 python3-rpm-macros                   noarch 3.13-3.fc41                       fedora                     6.4 KiB
 python3-six                          noarch 1.16.0-23.fc41                    fedora                   118.3 KiB
 python3-snowballstemmer              noarch 2.2.0-13.fc41                     fedora                     1.7 MiB
 python3-sphinx-theme-alabaster       noarch 0.7.16-6.fc41                     fedora                    41.9 KiB
 python3-sympy                        x86_64 1.13.3-1.fc42                     fedora                    78.3 MiB
 python3-tkinter                      x86_64 3.13.0-1.fc42                     fedora                     2.0 MiB
 python3-typing-extensions            noarch 4.12.2-3.fc41                     fedora                   464.5 KiB
 python3-urllib3                      noarch 2.2.3-3.fc42                      fedora                     1.0 MiB
 rav1e-libs                           x86_64 0.7.1-4.fc42                      fedora                     3.0 MiB
 rhash                                x86_64 1.4.5-1.fc42                      fedora                   359.3 KiB
 rpm-mpi-hooks                        noarch 8-10.fc41                         fedora                     8.7 KiB
 rsvg-pixbuf-loader                   x86_64 2.59.2-1.fc42                     fedora                   340.3 KiB
 scalapack-common                     x86_64 2.2.0-10.fc41                     fedora                    26.8 KiB
 scalapack-mpich                      x86_64 2.2.0-10.fc41                     fedora                     5.5 MiB
 scalapack-openmpi                    x86_64 2.2.0-10.fc41                     fedora                     5.5 MiB
 shared-mime-info                     x86_64 2.3-6.fc41                        fedora                     5.2 MiB
 snappy                               x86_64 1.2.1-3.fc42                      fedora                    71.1 KiB
 source-highlight                     x86_64 3.1.9-23.fc41                     fedora                     3.1 MiB
 suitesparse                          x86_64 7.7.0-2.fc41                      fedora                   139.9 MiB
 suitesparse64                        x86_64 7.7.0-2.fc41                      fedora                   139.9 MiB
 sundials                             x86_64 7.1.1-1.fc42                      copr_sagitter_ForTesting   3.8 MiB
 sundials-mpich                       x86_64 7.1.1-1.fc42                      copr_sagitter_ForTesting   4.0 MiB
 sundials-openmpi                     x86_64 7.1.1-1.fc42                      copr_sagitter_ForTesting   4.0 MiB
 superlu_dist-mpich                   x86_64 1:8.2.0-5.fc42                    fedora                     1.4 MiB
 superlu_dist-mpich-devel             x86_64 1:8.2.0-5.fc42                    fedora                   461.4 KiB
 superlu_dist-openmpi                 x86_64 1:8.2.0-5.fc42                    fedora                     1.4 MiB
 superlu_dist-openmpi-devel           x86_64 1:8.2.0-5.fc42                    fedora                   461.9 KiB
 svt-av1-libs                         x86_64 2.1.0-2.fc41                      fedora                     7.1 MiB
 systemd                              x86_64 257~rc3-1.fc42                    fedora                    17.6 MiB
 systemd-pam                          x86_64 257~rc3-1.fc42                    fedora                     1.1 MiB
 systemd-rpm-macros                   noarch 257~rc3-1.fc42                    fedora                    10.7 KiB
 tcl                                  x86_64 1:8.6.15-6.fc42                   fedora                     4.2 MiB
 tcsh                                 x86_64 6.24.14-1.fc42                    fedora                     1.2 MiB
 tk                                   x86_64 1:8.6.15-1.fc42                   fedora                     3.6 MiB
 torque-libs                          x86_64 6.1.3-13.fc42                     fedora                   458.3 KiB
 tpm2-tss                             x86_64 4.1.3-3.fc41                      fedora                     1.6 MiB
 tzdata                               noarch 2024a-9.fc41                      fedora                     1.7 MiB
 ucx                                  x86_64 1.17.0-3.fc42                     fedora                     2.4 MiB
 urw-base35-bookman-fonts             noarch 20200910-23.fc41                  fedora                     1.4 MiB
 urw-base35-c059-fonts                noarch 20200910-23.fc41                  fedora                     1.4 MiB
 urw-base35-d050000l-fonts            noarch 20200910-23.fc41                  fedora                    84.3 KiB
 urw-base35-fonts                     noarch 20200910-23.fc41                  fedora                     5.3 KiB
 urw-base35-fonts-common              noarch 20200910-23.fc41                  fedora                    37.4 KiB
 urw-base35-gothic-fonts              noarch 20200910-23.fc41                  fedora                     1.2 MiB
 urw-base35-nimbus-mono-ps-fonts      noarch 20200910-23.fc41                  fedora                     1.0 MiB
 urw-base35-nimbus-roman-fonts        noarch 20200910-23.fc41                  fedora                     1.4 MiB
 urw-base35-nimbus-sans-fonts         noarch 20200910-23.fc41                  fedora                     2.4 MiB
 urw-base35-p052-fonts                noarch 20200910-23.fc41                  fedora                     1.5 MiB
 urw-base35-standard-symbols-ps-fonts noarch 20200910-23.fc41                  fedora                    64.9 KiB
 urw-base35-z003-fonts                noarch 20200910-23.fc41                  fedora                   390.8 KiB
 vim-filesystem                       noarch 2:9.1.906-1.fc42                  fedora                    40.0   B
 xapian-core-libs                     x86_64 1.4.26-1.fc42                     fedora                     2.1 MiB
 xml-common                           noarch 0.6.3-65.fc41                     fedora                    78.4 KiB
 yaksa                                x86_64 0.3-6.fc41                        fedora                    44.9 MiB
 zlib-ng                              x86_64 2.2.2-1.fc42                      fedora                   153.6 KiB

Transaction Summary:
 Installing:       394 packages

Total size of inbound packages is 454 MiB. Need to download 454 MiB.
After this operation, 2 GiB extra will be used (install 2 GiB, remove 0 B).
[  1/394] environment-modules-0:5.5.0-1 100% |  32.5 MiB/s | 764.6 KiB |  00m00s
[  2/394] gdb-0:15.2-3.fc42.x86_64      100% |  37.1 MiB/s | 152.0 KiB |  00m00s
[  3/394] chrpath-0:0.16-24.fc41.x86_64 100% | 813.6 KiB/s |  30.1 KiB |  00m00s
[  4/394] doxygen-2:1.12.0-3.fc42.x86_6 100% | 127.4 MiB/s |   5.5 MiB |  00m00s
[  5/394] m4-0:1.4.19-10.fc41.x86_64    100% |  33.1 MiB/s | 305.4 KiB |  00m00s
[  6/394] hdf5-openmpi-devel-0:1.14.5-1 100% |  62.8 MiB/s |   1.4 MiB |  00m00s
[  7/394] make-1:4.4.1-9.fc42.x86_64    100% |  71.6 MiB/s | 586.3 KiB |  00m00s
[  8/394] python3-boutdata-0:0.2.1-7.fc 100% |  38.4 MiB/s | 157.4 KiB |  00m00s
[  9/394] openmpi-devel-0:5.0.6-1.fc42. 100% | 122.0 MiB/s |   2.3 MiB |  00m00s
[ 10/394] python3-cython-0:3.0.11-1.fc4 100% | 280.1 MiB/s |   3.9 MiB |  00m00s
[ 11/394] python3-boututils-0:0.2.1-6.f 100% |   8.6 MiB/s | 166.8 KiB |  00m00s
[ 12/394] python3-jinja2-0:3.1.4-5.fc41 100% |  32.1 MiB/s | 492.8 KiB |  00m00s
[ 13/394] python3-numpy-1:1.26.4-8.fc41 100% | 317.6 MiB/s |   7.6 MiB |  00m00s
[ 14/394] python3-netcdf4-0:1.7.2-1.fc4 100% |  23.5 MiB/s | 675.2 KiB |  00m00s
[ 15/394] python3-tables-0:3.10.1-3.fc4 100% |  71.7 MiB/s |   1.7 MiB |  00m00s
[ 16/394] python3-sphinx-1:7.3.7-2.fc41 100% |  84.9 MiB/s |   2.6 MiB |  00m00s
[ 17/394] python3-zoidberg-0:0.1.1-8.fc 100% |   8.2 MiB/s | 125.4 KiB |  00m00s
[ 18/394] sundials-debugsource-0:7.1.1- 100% |  65.2 MiB/s | 734.7 KiB |  00m00s
[ 19/394] sundials-debuginfo-0:7.1.1-1. 100% |  73.4 MiB/s |   1.8 MiB |  00m00s
[ 20/394] sundials-openmpi-debuginfo-0: 100% | 143.6 MiB/s |   1.9 MiB |  00m00s
[ 21/394] sundials-mpich-debuginfo-0:7. 100% |  88.8 MiB/s |   1.9 MiB |  00m00s
[ 22/394] fftw-devel-0:3.3.10-13.fc41.x 100% |   8.2 MiB/s | 134.5 KiB |  00m00s
[ 23/394] cmake-0:3.31.2-1.fc42.x86_64  100% | 281.4 MiB/s |   9.9 MiB |  00m00s
[ 24/394] flexiblas-devel-0:3.4.4-3.fc4 100% |   4.8 MiB/s | 121.8 KiB |  00m00s
[ 25/394] fmt-devel-0:11.0.2-2.fc42.x86 100% |   9.0 MiB/s | 129.6 KiB |  00m00s
[ 26/394] gettext-devel-0:0.22.5-6.fc41 100% |  38.8 MiB/s | 238.6 KiB |  00m00s
[ 27/394] python3-scipy-0:1.14.1-1.fc42 100% | 102.6 MiB/s |  17.3 MiB |  00m00s
[ 28/394] gcc-c++-0:14.2.1-6.fc42.x86_6 100% | 236.0 MiB/s |  14.2 MiB |  00m00s
[ 29/394] hdf5-devel-0:1.14.5-1.fc42.x8 100% |  27.4 MiB/s |   1.5 MiB |  00m00s
[ 30/394] hdf5-mpich-devel-0:1.14.5-1.f 100% |  48.4 MiB/s |   1.5 MiB |  00m00s
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[364/394] nss-0:3.106.0-1.fc42.x86_64   100% | 114.4 MiB/s | 702.8 KiB |  00m00s
[365/394] poppler-data-0:0.4.11-8.fc41. 100% | 197.4 MiB/s |   2.0 MiB |  00m00s
[366/394] svt-av1-libs-0:2.1.0-2.fc41.x 100% |  59.8 MiB/s |   2.0 MiB |  00m00s
[367/394] libvmaf-0:3.0.0-2.fc41.x86_64 100% |  27.0 MiB/s | 193.7 KiB |  00m00s
[368/394] dbus-libs-1:1.14.10-4.fc41.x8 100% |  37.9 MiB/s | 155.1 KiB |  00m00s
[369/394] libassuan-0:2.5.7-2.fc41.x86_ 100% |  21.8 MiB/s |  67.1 KiB |  00m00s
[370/394] gpgme-0:1.24.0-1.fc42.x86_64  100% |  53.2 MiB/s | 217.7 KiB |  00m00s
[371/394] nss-sysinit-0:3.106.0-1.fc42. 100% |   9.4 MiB/s |  19.2 KiB |  00m00s
[372/394] nss-util-0:3.106.0-1.fc42.x86 100% |  21.0 MiB/s |  85.8 KiB |  00m00s
[373/394] nss-softokn-0:3.106.0-1.fc42. 100% |  44.6 MiB/s | 411.3 KiB |  00m00s
[374/394] libgpg-error-0:1.51-1.fc42.x8 100% |  28.8 MiB/s | 236.3 KiB |  00m00s
[375/394] gnupg2-0:2.4.5-4.fc42.x86_64  100% | 192.1 MiB/s |   2.7 MiB |  00m00s
[376/394] nss-softokn-freebl-0:3.106.0- 100% |  35.2 MiB/s | 324.1 KiB |  00m00s
[377/394] libgcrypt-0:1.11.0-4.fc42.x86 100% |  94.9 MiB/s | 583.2 KiB |  00m00s
[378/394] npth-0:1.8-1.fc42.x86_64      100% |   8.4 MiB/s |  25.9 KiB |  00m00s
[379/394] libksba-0:1.6.7-2.fc41.x86_64 100% |  39.0 MiB/s | 159.7 KiB |  00m00s
[380/394] tpm2-tss-0:4.1.3-3.fc41.x86_6 100% | 100.5 MiB/s | 411.5 KiB |  00m00s
[381/394] rsvg-pixbuf-loader-0:2.59.2-1 100% |  40.6 MiB/s | 166.1 KiB |  00m00s
[382/394] hypre-openmpi-0:2.32.0-1.fc42 100% | 135.0 MiB/s |   1.8 MiB |  00m00s
[383/394] kernel-headers-0:6.13.0-0.rc1 100% | 205.6 MiB/s |   1.6 MiB |  00m00s
[384/394] annobin-plugin-gcc-0:12.77-1. 100% | 190.9 MiB/s | 977.2 KiB |  00m00s
[385/394] gcc-plugin-annobin-0:14.2.1-6 100% |  27.9 MiB/s |  57.1 KiB |  00m00s
[386/394] hdf-libs-0:4.3.0-1.fc42.x86_6 100% |  17.7 MiB/s | 290.3 KiB |  00m00s
[387/394] annobin-docs-0:12.77-1.fc42.n 100% |  22.6 MiB/s |  92.4 KiB |  00m00s
[388/394] systemd-rpm-macros-0:257~rc3- 100% |  33.6 MiB/s |  34.4 KiB |  00m00s
[389/394] pyproject-rpm-macros-0:1.16.3 100% |  43.6 MiB/s |  44.6 KiB |  00m00s
[390/394] python-rpm-macros-0:3.13-3.fc 100% |  17.3 MiB/s |  17.7 KiB |  00m00s
[391/394] python3-rpm-generators-0:14-1 100% |  14.3 MiB/s |  29.3 KiB |  00m00s
[392/394] python3-rpm-macros-0:3.13-3.f 100% |  12.2 MiB/s |  12.4 KiB |  00m00s
[393/394] cmake-rpm-macros-0:3.31.2-1.f 100% |  16.5 MiB/s |  16.9 KiB |  00m00s
[394/394] hypre-mpich-0:2.32.0-1.fc42.x 100% |  23.4 MiB/s |   1.8 MiB |  00m00s
--------------------------------------------------------------------------------
[394/394] Total                         100% | 234.1 MiB/s | 454.0 MiB |  00m02s
Running transaction
[  1/396] Verify package files          100% | 294.0   B/s | 394.0   B |  00m01s
[  2/396] Prepare transaction           100% |   1.8 KiB/s | 394.0   B |  00m00s
[  3/396] Installing libgfortran-0:14.2 100% | 380.6 MiB/s |   3.0 MiB |  00m00s
[  4/396] Installing libquadmath-0:14.2 100% | 319.5 MiB/s | 327.2 KiB |  00m00s
[  5/396] Installing cmake-filesystem-0 100% |   7.4 MiB/s |   7.6 KiB |  00m00s
[  6/396] Installing libjpeg-turbo-0:3. 100% | 386.1 MiB/s | 790.8 KiB |  00m00s
[  7/396] Installing libpng-2:1.6.44-1. 100% | 241.2 MiB/s | 247.0 KiB |  00m00s
[  8/396] Installing nspr-0:4.36.0-1.fc 100% | 316.6 MiB/s | 324.2 KiB |  00m00s
[  9/396] Installing fonts-filesystem-1 100% |   0.0   B/s | 788.0   B |  00m00s
[ 10/396] Installing urw-base35-fonts-c 100% |   0.0   B/s |  38.4 KiB |  00m00s
[ 11/396] Installing metis-0:5.1.0.3-6. 100% | 322.2 MiB/s | 989.8 KiB |  00m00s
[ 12/396] Installing hwloc-libs-0:2.11. 100% | 573.3 MiB/s |   2.9 MiB |  00m00s
[ 13/396] Installing libaec-0:1.1.3-1.f 100% |  98.1 MiB/s | 100.5 KiB |  00m00s
[ 14/396] Installing expat-0:2.6.4-1.fc 100% | 280.9 MiB/s | 287.6 KiB |  00m00s
[ 15/396] Installing libgpg-error-0:1.5 100% | 290.7 MiB/s | 893.1 KiB |  00m00s
[ 16/396] Installing libwebp-0:1.4.0-4. 100% | 269.1 MiB/s | 826.8 KiB |  00m00s
[ 17/396] Installing nss-util-0:3.106.0 100% | 202.8 MiB/s | 207.7 KiB |  00m00s
[ 18/396] Installing zlib-ng-compat-dev 100% | 105.8 MiB/s | 108.3 KiB |  00m00s
[ 19/396] Installing libmpc-0:1.3.1-6.f 100% | 162.3 MiB/s | 166.2 KiB |  00m00s
[ 20/396] Installing libassuan-0:2.5.7- 100% | 161.7 MiB/s | 165.6 KiB |  00m00s
[ 21/396] Installing libaec-devel-0:1.1 100% |   0.0   B/s |  13.5 KiB |  00m00s
[ 22/396] Installing hdf5-0:1.14.5-1.fc 100% | 355.9 MiB/s |   7.1 MiB |  00m00s
[ 23/396] Installing python-rpm-macros- 100% |   0.0   B/s |  22.8 KiB |  00m00s
[ 24/396] Installing openblas-0:0.3.28- 100% | 105.8 MiB/s | 108.3 KiB |  00m00s
[ 25/396] Installing tcl-1:8.6.15-6.fc4 100% | 326.9 MiB/s |   4.2 MiB |  00m00s
[ 26/396] Installing openjpeg-0:2.5.2-4 100% | 218.6 MiB/s | 447.6 KiB |  00m00s
[ 27/396] Installing lcms2-0:2.16-4.fc4 100% | 416.5 MiB/s | 426.5 KiB |  00m00s
[ 28/396] Installing libnl3-0:3.11.0-1. 100% | 256.6 MiB/s |   1.0 MiB |  00m00s
[ 29/396] Installing libibverbs-0:54.0- 100% | 245.7 MiB/s |   1.2 MiB |  00m00s
[ 30/396] Installing munge-libs-0:0.5.1 100% |   0.0   B/s |  32.9 KiB |  00m00s
[ 31/396] Installing pmix-0:4.2.8-3.fc4 100% | 336.0 MiB/s |   2.0 MiB |  00m00s
[ 32/396] Installing python3-rpm-macros 100% |   0.0   B/s |   6.7 KiB |  00m00s
[ 33/396] Installing scalapack-common-0 100% |   0.0   B/s |  28.3 KiB |  00m00s
[ 34/396] Installing fftw-libs-quad-0:3 100% | 422.2 MiB/s |   2.5 MiB |  00m00s
[ 35/396] Installing python3-matplotlib 100% | 416.4 MiB/s |   7.9 MiB |  00m00s
[ 36/396] Installing python3-matplotlib 100% | 241.7 MiB/s | 742.6 KiB |  00m00s
[ 37/396] Installing libICE-0:1.1.1-4.f 100% | 178.3 MiB/s | 182.6 KiB |  00m00s
[ 38/396] Installing adobe-mappings-cma 100% | 422.0 MiB/s |  15.2 MiB |  00m00s
[ 39/396] Installing fribidi-0:1.0.16-1 100% | 192.4 MiB/s | 197.0 KiB |  00m00s
[ 40/396] Installing libimagequant-0:4. 100% | 326.3 MiB/s | 668.3 KiB |  00m00s
[ 41/396] Installing libseccomp-0:2.5.5 100% | 171.1 MiB/s | 175.2 KiB |  00m00s
[ 42/396] Installing MUMPS-common-0:5.7 100% | 966.2 MiB/s | 989.4 KiB |  00m00s
[ 43/396] Installing numactl-libs-0:2.0 100% |   0.0   B/s |  55.3 KiB |  00m00s
[ 44/396] Installing libpsm2-0:12.0.1-1 100% |  86.2 MiB/s | 441.1 KiB |  00m00s
[ 45/396] Installing tzdata-0:2024a-9.f 100% |  64.7 MiB/s |   1.9 MiB |  00m00s
[ 46/396] Installing libtextstyle-0:0.2 100% | 191.9 MiB/s | 196.5 KiB |  00m00s
[ 47/396] Installing gettext-libs-0:0.2 100% | 335.3 MiB/s |   1.7 MiB |  00m00s
[ 48/396] Installing fftw-libs-single-0 100% | 402.6 MiB/s |   3.6 MiB |  00m00s
[ 49/396] Installing fftw-libs-long-0:3 100% | 388.1 MiB/s |   1.6 MiB |  00m00s
[ 50/396] Installing fftw-libs-double-0 100% | 228.8 MiB/s |   3.4 MiB |  00m00s
[ 51/396] Installing groff-base-0:1.23. 100% | 203.8 MiB/s |   3.9 MiB |  00m00s
[ 52/396] Installing jsoncpp-0:1.9.5-8. 100% | 249.0 MiB/s | 254.9 KiB |  00m00s
[ 53/396] Installing vim-filesystem-2:9 100% |   4.6 MiB/s |   4.7 KiB |  00m00s
[ 54/396] Installing less-0:668-1.fc42. 100% | 200.0 MiB/s | 409.7 KiB |  00m00s
[ 55/396] Installing sundials-debuginfo 100% | 334.2 MiB/s |   8.4 MiB |  00m00s
[ 56/396] Installing make-1:4.4.1-9.fc4 100% | 300.0 MiB/s |   1.8 MiB |  00m00s
[ 57/396] Installing fftw-0:3.3.10-13.f 100% | 181.2 MiB/s | 185.5 KiB |  00m00s
[ 58/396] Installing fftw-libs-0:3.3.10 100% |   0.0   B/s | 124.0   B |  00m00s
[ 59/396] Installing adobe-mappings-cma 100% | 285.7 MiB/s | 585.2 KiB |  00m00s
[ 60/396] Installing libSM-0:1.2.4-4.fc 100% |  96.3 MiB/s |  98.7 KiB |  00m00s
[ 61/396] Installing pyproject-rpm-macr 100% | 113.0 MiB/s | 115.7 KiB |  00m00s
[ 62/396] Installing librdmacm-0:54.0-3 100% | 153.3 MiB/s | 157.0 KiB |  00m00s
[ 63/396] Installing libfabric-0:1.22.0 100% | 469.5 MiB/s |   5.2 MiB |  00m00s
[ 64/396] Installing openblas-openmp-0: 100% | 633.7 MiB/s |  39.3 MiB |  00m00s
[ 65/396] Installing flexiblas-0:3.4.4- 100% |   0.0   B/s |  49.7 KiB |  00m00s
[ 66/396] Installing flexiblas-openblas 100% |   0.0   B/s |  44.1 KiB |  00m00s
[ 67/396] Installing flexiblas-netlib-0 100% | 426.6 MiB/s |  10.7 MiB |  00m00s
[ 68/396] Installing suitesparse-0:7.7. 100% | 600.7 MiB/s | 140.0 MiB |  00m00s
[ 69/396] Installing openblas-openmp64- 100% | 647.2 MiB/s |  39.5 MiB |  00m00s
[ 70/396] Installing flexiblas-netlib64 100% | 448.9 MiB/s |  10.8 MiB |  00m00s
[ 71/396] Installing flexiblas-openblas 100% |   0.0   B/s |  44.2 KiB |  00m00s
[ 72/396] Installing openblas-serial-0: 100% | 640.8 MiB/s |  37.8 MiB |  00m00s
[ 73/396] Installing suitesparse64-0:7. 100% | 595.6 MiB/s | 140.0 MiB |  00m00s
[ 74/396] Installing cpp-0:14.2.1-6.fc4 100% | 406.7 MiB/s |  35.0 MiB |  00m00s
[ 75/396] Installing nss-softokn-freebl 100% | 276.0 MiB/s | 847.9 KiB |  00m00s
[ 76/396] Installing nss-softokn-0:3.10 100% | 474.5 MiB/s |   1.9 MiB |  00m00s
[ 77/396] Installing nss-sysinit-0:3.10 100% |  22.8 MiB/s |  23.4 KiB |  00m00s
[ 78/396] Installing nss-0:3.106.0-1.fc 100% | 188.6 MiB/s |   1.9 MiB |  00m00s
[ 79/396] Installing libgcrypt-0:1.11.0 100% | 310.0 MiB/s |   1.6 MiB |  00m00s
[ 80/396] Installing libksba-0:1.6.7-2. 100% | 195.8 MiB/s | 401.0 KiB |  00m00s
[ 81/396] Installing graphviz-libs-0:12 100% | 304.6 MiB/s |   1.2 MiB |  00m00s
[ 82/396] Installing hdf-libs-0:4.3.0-1 100% | 342.0 MiB/s | 700.5 KiB |  00m00s
[ 83/396] Installing urw-base35-bookman 100% | 136.5 MiB/s |   1.4 MiB |  00m00s
[ 84/396] Installing urw-base35-c059-fo 100% | 199.3 MiB/s |   1.4 MiB |  00m00s
[ 85/396] Installing urw-base35-d050000 100% |  20.8 MiB/s |  85.4 KiB |  00m00s
[ 86/396] Installing urw-base35-gothic- 100% | 166.1 MiB/s |   1.2 MiB |  00m00s
[ 87/396] Installing urw-base35-nimbus- 100% | 175.3 MiB/s |   1.1 MiB |  00m00s
[ 88/396] Installing urw-base35-nimbus- 100% | 195.1 MiB/s |   1.4 MiB |  00m00s
[ 89/396] Installing urw-base35-nimbus- 100% | 239.4 MiB/s |   2.4 MiB |  00m00s
[ 90/396] Installing urw-base35-p052-fo 100% | 212.5 MiB/s |   1.5 MiB |  00m00s
[ 91/396] Installing urw-base35-standar 100% |  16.1 MiB/s |  66.0 KiB |  00m00s
[ 92/396] Installing urw-base35-z003-fo 100% |  76.5 MiB/s | 391.8 KiB |  00m00s
[ 93/396] Installing urw-base35-fonts-0 100% |   0.0   B/s |   5.6 KiB |  00m00s
[ 94/396] Installing dejavu-sans-fonts- 100% | 423.7 MiB/s |   5.5 MiB |  00m00s
[ 95/396] Installing abattis-cantarell- 100% | 189.9 MiB/s | 194.4 KiB |  00m00s
[ 96/396] Installing google-droid-sans- 100% | 391.2 MiB/s |   6.3 MiB |  00m00s
[ 97/396] Installing libssh-devel-0:0.1 100% | 176.1 MiB/s | 180.3 KiB |  00m00s
[ 98/396] Installing annobin-docs-0:12. 100% |  32.4 MiB/s |  99.5 KiB |  00m00s
[ 99/396] Installing kernel-headers-0:6 100% | 221.5 MiB/s |   6.6 MiB |  00m00s
[100/396] Installing libxcrypt-devel-0: 100% |  16.0 MiB/s |  32.9 KiB |  00m00s
[101/396] Installing glibc-devel-0:2.40 100% | 179.1 MiB/s |   2.3 MiB |  00m00s
[102/396] Installing gcc-0:14.2.1-6.fc4 100% | 445.8 MiB/s | 104.3 MiB |  00m00s
[103/396] Installing libquadmath-devel- 100% |  22.8 MiB/s |  23.4 KiB |  00m00s
[104/396] Installing gcc-gfortran-0:14. 100% | 396.0 MiB/s |  37.2 MiB |  00m00s
[105/396] Installing hdf5-devel-0:1.14. 100% | 156.7 MiB/s |   3.3 MiB |  00m00s
[106/396] Installing tpm2-tss-0:4.1.3-3 100% | 263.5 MiB/s |   1.6 MiB |  00m00s
[107/396] Installing npth-0:1.8-1.fc42. 100% |   0.0   B/s |  54.7 KiB |  00m00s
[108/396] Installing dbus-libs-1:1.14.1 100% | 180.7 MiB/s | 370.0 KiB |  00m00s
[109/396] Installing avahi-libs-0:0.8-3 100% | 172.7 MiB/s | 176.8 KiB |  00m00s
[110/396] Installing libvmaf-0:3.0.0-2. 100% | 402.5 MiB/s | 824.4 KiB |  00m00s
[111/396] Installing libaom-0:3.9.0-3.f 100% | 389.3 MiB/s |   5.1 MiB |  00m00s
[112/396] Installing poppler-data-0:0.4 100% | 387.2 MiB/s |  12.4 MiB |  00m00s
[113/396] Installing libdatrie-0:0.2.13 100% |  57.7 MiB/s |  59.0 KiB |  00m00s
[114/396] Installing libthai-0:0.1.29-9 100% | 255.6 MiB/s | 785.3 KiB |  00m00s
[115/396] Installing cups-filesystem-1: 100% |   0.0   B/s |   1.8 KiB |  00m00s
[116/396] Installing svt-av1-libs-0:2.1 100% | 445.1 MiB/s |   7.1 MiB |  00m00s
[117/396] Installing rav1e-libs-0:0.7.1 100% | 430.4 MiB/s |   3.0 MiB |  00m00s
[118/396] Installing libdav1d-0:1.5.0-1 100% | 331.7 MiB/s |   1.7 MiB |  00m00s
[119/396] Installing libavif-0:1.0.4-7. 100% | 180.8 MiB/s | 185.1 KiB |  00m00s
[120/396] Installing libpaper-1:2.1.1-7 100% |  49.3 MiB/s |  50.5 KiB |  00m00s
[121/396] Installing libijs-0:0.35-23.f 100% |   0.0   B/s |  62.6 KiB |  00m00s
[122/396] Installing jbig2dec-libs-0:0. 100% | 166.6 MiB/s | 170.6 KiB |  00m00s
[123/396] Installing adobe-mappings-pdf 100% | 439.6 MiB/s |   4.4 MiB |  00m00s
[124/396] Installing netpbm-0:11.02.00- 100% | 282.7 MiB/s | 579.0 KiB |  00m00s
[125/396] Installing procps-ng-0:4.0.4- 100% | 173.5 MiB/s |   1.0 MiB |  00m00s
[126/396] Installing libstdc++-devel-0: 100% | 338.2 MiB/s |  15.6 MiB |  00m00s
[127/396] Installing openssl-devel-1:3. 100% |  69.1 MiB/s |   5.2 MiB |  00m00s
[128/396] Installing publicsuffix-list- 100% | 311.6 MiB/s | 319.1 KiB |  00m00s
[129/396] Installing libpsl-devel-0:0.2 100% | 110.9 MiB/s | 113.6 KiB |  00m00s
[130/396] Installing libnghttp2-devel-0 100% | 289.5 MiB/s | 296.5 KiB |  00m00s
[131/396] Installing libidn2-devel-0:2. 100% | 127.0 MiB/s | 260.1 KiB |  00m00s
[132/396] Installing brotli-0:1.1.0-5.f 100% |   0.0   B/s |  32.5 KiB |  00m00s
[133/396] Installing brotli-devel-0:1.1 100% |  33.2 MiB/s |  68.0 KiB |  00m00s
[134/396] Installing libcurl-devel-0:8. 100% | 113.2 MiB/s |   1.4 MiB |  00m00s
[135/396] Installing dbus-common-1:1.14 100% | 797.1 KiB/s |  13.6 KiB |  00m00s
[136/396] Installing dbus-broker-0:36-4 100% |  62.7 MiB/s | 385.3 KiB |  00m00s
[137/396] Installing dbus-1:1.14.10-4.f 100% |   0.0   B/s | 124.0   B |  00m00s
[138/396] Installing systemd-pam-0:257~ 100% | 186.8 MiB/s |   1.1 MiB |  00m00s
[139/396] Installing systemd-0:257~rc3- 100% | 127.0 MiB/s |  17.8 MiB |  00m00s
>>> Running post-install scriptlet: systemd-0:257~rc3-1.fc42.x86_64
>>> Finished post-install scriptlet: systemd-0:257~rc3-1.fc42.x86_64
>>> Scriptlet output:
>>> Creating group 'systemd-journal' with GID 190.
>>> Creating group 'systemd-oom' with GID 999.
>>> Creating user 'systemd-oom' (systemd Userspace OOM Killer) with UID 999 and 
>>> 
[140/396] Installing logrotate-0:3.22.0 100% |   6.9 MiB/s | 155.7 KiB |  00m00s
>>> Running post-install scriptlet: logrotate-0:3.22.0-2.fc41.x86_64
>>> Finished post-install scriptlet: logrotate-0:3.22.0-2.fc41.x86_64
>>> Scriptlet output:
>>> Created symlink '/etc/systemd/system/timers.target.wants/logrotate.timer' â†
>>> 
[141/396] Installing munge-0:0.5.16-3.f 100% |  31.3 MiB/s | 352.4 KiB |  00m00s
[142/396] Installing torque-libs-0:6.1. 100% | 224.2 MiB/s | 459.1 KiB |  00m00s
[143/396] Installing prrte-libs-0:3.0.6 100% | 168.8 MiB/s |   1.7 MiB |  00m00s
[144/396] Installing prrte-0:3.0.6-1.fc 100% | 174.6 MiB/s | 178.8 KiB |  00m00s
[145/396] Installing ncurses-0:6.5-2.20 100% | 309.5 MiB/s | 633.9 KiB |  00m00s
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[339/396] Installing ptscotch-mpich-dev 100% | 103.6 MiB/s | 106.1 KiB |  00m00s
[340/396] Installing hdf5-mpich-0:1.14. 100% | 393.0 MiB/s |   7.1 MiB |  00m00s
[341/396] Installing scalapack-mpich-0: 100% | 421.5 MiB/s |   5.5 MiB |  00m00s
[342/396] Installing hdf5-openmpi-0:1.1 100% | 393.2 MiB/s |   7.1 MiB |  00m00s
[343/396] Installing scalapack-openmpi- 100% | 421.8 MiB/s |   5.5 MiB |  00m00s
[344/396] Installing rpm-mpi-hooks-0:8- 100% |   4.7 MiB/s |   9.7 KiB |  00m00s
[345/396] Installing openmpi-devel-0:5. 100% | 167.2 MiB/s |   3.3 MiB |  00m00s
[346/396] Installing mpich-devel-0:4.2. 100% | 119.4 MiB/s |   2.1 MiB |  00m00s
[347/396] Installing hdf5-mpich-devel-0 100% | 449.6 MiB/s |   3.1 MiB |  00m00s
[348/396] Installing hdf5-openmpi-devel 100% | 448.8 MiB/s |   3.1 MiB |  00m00s
[349/396] Installing superlu_dist-openm 100% | 354.3 MiB/s |   1.4 MiB |  00m00s
[350/396] Installing superlu_dist-openm 100% | 229.4 MiB/s | 469.8 KiB |  00m00s
[351/396] Installing hypre-openmpi-0:2. 100% | 396.6 MiB/s |   4.8 MiB |  00m00s
[352/396] Installing sundials-openmpi-0 100% | 338.2 MiB/s |   4.1 MiB |  00m00s
[353/396] Installing MUMPS-openmpi-0:5. 100% | 486.8 MiB/s |   9.7 MiB |  00m00s
[354/396] Installing petsc-openmpi-0:3. 100% | 402.2 MiB/s |  24.5 MiB |  00m00s
[355/396] Installing MUMPS-mpich-0:5.7. 100% | 486.6 MiB/s |   9.7 MiB |  00m00s
[356/396] Installing ptscotch-mpich-dev 100% |   0.0   B/s |  39.8 KiB |  00m00s
[357/396] Installing superlu_dist-mpich 100% | 353.3 MiB/s |   1.4 MiB |  00m00s
[358/396] Installing superlu_dist-mpich 100% | 229.2 MiB/s | 469.3 KiB |  00m00s
[359/396] Installing hypre-mpich-0:2.32 100% | 396.3 MiB/s |   4.8 MiB |  00m00s
[360/396] Installing petsc-mpich-0:3.22 100% | 405.7 MiB/s |  24.3 MiB |  00m00s
[361/396] Installing sundials-mpich-0:7 100% | 337.4 MiB/s |   4.0 MiB |  00m00s
[362/396] Installing netcdf-cxx4-0:4.3. 100% | 310.7 MiB/s | 318.2 KiB |  00m00s
[363/396] Installing gettext-common-dev 100% | 573.0 MiB/s | 586.8 KiB |  00m00s
[364/396] Installing fmt-0:11.0.2-2.fc4 100% | 259.4 MiB/s | 265.6 KiB |  00m00s
[365/396] Installing rhash-0:1.4.5-1.fc 100% | 178.0 MiB/s | 364.6 KiB |  00m00s
[366/396] Installing libuv-1:1.49.2-1.f 100% |  39.9 MiB/s | 572.2 KiB |  00m00s
[367/396] Installing cmake-data-0:3.31. 100% | 117.6 MiB/s |   9.1 MiB |  00m00s
[368/396] Installing cmake-0:3.31.2-1.f 100% | 427.9 MiB/s |  32.9 MiB |  00m00s
[369/396] Installing lzo-0:2.10-13.fc41 100% | 164.5 MiB/s | 168.5 KiB |  00m00s
[370/396] Installing xapian-core-libs-0 100% | 345.8 MiB/s |   2.1 MiB |  00m00s
[371/396] Installing doxygen-2:1.12.0-3 100% | 409.1 MiB/s |  19.2 MiB |  00m00s
[372/396] Installing python3-tables-0:3 100% | 406.3 MiB/s |  10.2 MiB |  00m00s
[373/396] Installing fmt-devel-0:11.0.2 100% | 282.4 MiB/s | 578.4 KiB |  00m00s
[374/396] Installing gettext-devel-0:0. 100% | 247.4 MiB/s |   1.0 MiB |  00m00s
[375/396] Installing netcdf-cxx4-devel- 100% | 154.5 MiB/s | 474.7 KiB |  00m00s
[376/396] Installing sundials-mpich-dev 100% | 446.0 MiB/s |   6.7 MiB |  00m00s
[377/396] Installing petsc-mpich-devel- 100% | 465.3 MiB/s |  10.7 MiB |  00m00s
[378/396] Installing petsc-openmpi-deve 100% | 451.7 MiB/s |  11.3 MiB |  00m00s
[379/396] Installing sundials-openmpi-d 100% | 304.5 MiB/s |   6.7 MiB |  00m00s
[380/396] Installing gdb-0:15.2-3.fc42. 100% | 218.7 MiB/s | 447.8 KiB |  00m00s
[381/396] Installing python3-boutdata-0 100% | 181.7 MiB/s | 558.2 KiB |  00m00s
[382/396] Installing python3-zoidberg-0 100% | 101.5 MiB/s | 519.5 KiB |  00m00s
[383/396] Installing python3-sphinx-1:7 100% | 234.7 MiB/s |  11.0 MiB |  00m00s
[384/396] Installing sundials-devel-0:7 100% | 456.5 MiB/s |   6.4 MiB |  00m00s
[385/396] Installing gcc-c++-0:14.2.1-6 100% | 414.5 MiB/s |  38.1 MiB |  00m00s
[386/396] Installing annobin-plugin-gcc 100% |  69.3 MiB/s | 992.9 KiB |  00m00s
[387/396] Installing gcc-plugin-annobin 100% |   4.4 MiB/s |  59.2 KiB |  00m00s
[388/396] Installing flexiblas-devel-0: 100% | 595.4 MiB/s |   4.8 MiB |  00m00s
[389/396] Installing fftw-devel-0:3.3.1 100% | 141.7 MiB/s | 290.3 KiB |  00m00s
[390/396] Installing sundials-mpich-deb 100% | 331.4 MiB/s |   8.3 MiB |  00m00s
[391/396] Installing sundials-openmpi-d 100% | 345.5 MiB/s |   8.3 MiB |  00m00s
[392/396] Installing mpark-variant-deve 100% | 116.4 MiB/s | 119.2 KiB |  00m00s
[393/396] Installing systemd-rpm-macros 100% |   5.5 MiB/s |  11.2 KiB |  00m00s
[394/396] Installing sundials-debugsour 100% | 392.7 MiB/s |  22.4 MiB |  00m00s
[395/396] Installing m4-0:1.4.19-10.fc4 100% | 195.1 MiB/s | 599.2 KiB |  00m00s
[396/396] Installing chrpath-0:0.16-24. 100% |  92.9 KiB/s |  56.4 KiB |  00m01s
Warning: skipped OpenPGP checks for 19 packages from repository: copr_sagitter_ForTesting
Complete!
Finish: build setup for bout++-5.2.0.dev574+ge3f21cd2f-1.fc42.src.rpm
Start: rpmbuild bout++-5.2.0.dev574+ge3f21cd2f-1.fc42.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1733788800
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.WHLk3k
+ umask 022
+ cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ test -d /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ /usr/bin/rm -rf /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.XbL7ud
+ umask 022
+ cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ rm -rf BOUT++-v5.2.0.dev574+ge3f21cd2f
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/BOUT++-v5.2.0.dev574+ge3f21cd2f.tar.xz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd BOUT++-v5.2.0.dev574+ge3f21cd2f
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/wait-finalise.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ sed -e 's/html_theme = "sphinx_book_theme"/html_theme = "sphinxdoc"/' -i manual/sphinx/conf.py
+ rm -rf externalpackages/mpark.variant/
+ mkdir -p externalpackages/mpark.variant/include/
+ rm -rf tools/pylib/boutdata
+ rm -rf tools/pylib/boututils
++ find -L tools/pylib/ -type f
++ grep -v _boutcore_build
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/.gitignore
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/Makefile
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/README.md
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/.gitignore
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/CMakeLists.txt
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/GENERATION.md
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/Makefile
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/backend.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/bout_options.pxd
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutcpp.pxd.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutexception_helper.cxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutexception_helper.hxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp.pyx.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp_openmpi_compat.hxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/debug_helper.hxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/debug_setup.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/generate.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/geninput.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.cxx.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.h.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/other_enums.hxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/resolve_enum.pxd.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/resolve_enum_inv.pyx.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/scan_enums.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/setup.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/boutconfig/__init__.py.cin
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/boutconfig/__init__.py.in
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.etmrG8
+ umask 022
+ cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd BOUT++-v5.2.0.dev574+ge3f21cd2f
+ export CC=mpicc
+ CC=mpicc
+ export CXX=mpicxx
+ CXX=mpicxx
+ for mpi in openmpi mpich
+ mkdir build_openmpi
+ for mpi in openmpi mpich
+ mkdir build_mpich
+ for mpi in openmpi mpich
+ '[' openmpi = mpich ']'
+ '[' openmpi = openmpi ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/openmpi-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/openmpi-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64
+ eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER;
LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH;
MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN;
MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE;
_LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_;
LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES;
CMAKE_PREFIX_PATH=/usr/lib64/openmpi; export CMAKE_PREFIX_PATH;
PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi; export MPI_PYTHON3_SITEARCH;
MPI_HOME=/usr/lib64/openmpi; export MPI_HOME;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR;
__MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME;
__MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SUFFIX=_openmpi; export MPI_SUFFIX;
MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB;
PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN;
test 0;'
++ MPI_COMPILER=openmpi-x86_64
++ export MPI_COMPILER
++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
++ export LD_LIBRARY_PATH
++ MPI_MAN=/usr/share/man/openmpi-x86_64
++ export MPI_MAN
++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/openmpi-x86_64
++ export MPI_INCLUDE
++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64
++ export _LMFILES_
++ LOADEDMODULES=mpi/openmpi-x86_64
++ export LOADEDMODULES
++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi
++ export CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi
++ export MPI_PYTHON3_SITEARCH
++ MPI_HOME=/usr/lib64/openmpi
++ export MPI_HOME
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi
++ export MPI_FORTRAN_MOD_DIR
++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest'
++ export __MODULES_LMALTNAME
++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SUFFIX=_openmpi
++ export MPI_SUFFIX
++ MPI_SYSCONFIG=/etc/openmpi-x86_64
++ export MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_LIB=/usr/lib64/openmpi/lib
++ export MPI_LIB
++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/openmpi/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=mpicc
+ export CC
+ CXX=mpicxx
+ export CXX
+ /usr/bin/cmake -S . -B build_openmpi -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBOUT_USE_FFTW=ON -DBOUT_USE_NETCDF=ON -DBOUT_USE_SCOREP=OFF -DBOUT_USE_SYSTEM_MPARK_VARIANT=ON -DBOUT_USE_LAPACK=ON -DBOUT_USE_NLS=ON -DBOUT_USE_SYSTEM_FMT=ON -DBOUT_USE_UUID_SYSTEM_GENERATOR=ON -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_INCLUDEDIR=/usr/include/openmpi-x86_64/bout++/ -DCMAKE_INSTALL_DATAROOTDIR=/usr/share -DCMAKE_INSTALL_PYTHON_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi -DBOUT_TEST_TIMEOUT=900 -DBOUT_BUILD_DOCS=ON -DBOUT_USE_PETSC=ON -DBOUT_USE_SUNDIALS=ON
-- Configuring BOUT++ version 5.2.0
-- The CXX compiler identification is GNU 14.2.1
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/lib64/openmpi/bin/mpicxx - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Python3: /usr/bin/python3.13 (found version "3.13.0") found components: Interpreter
-- Could NOT find ClangFormat (missing: ClangFormat_BIN) 
CMake Warning (dev) at CMakeLists.txt:396 (message):
  'src/field/generated_fieldops.cxx' will not be regenerated when you make
  changes to either 'src/field/gen_fieldops.py' or
  'src/field/gen_fieldops.jinja'.  This is because either Python3 or
  clang-format is missing (see above messages for more information) or
  BOUT_GENERATE_FIELDOPS is OFF (current value: OFF).  This warning is only
  important for BOUT++ developers and can otherwise be safely ignored.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found Python3: /usr/bin/python3.13 (found suitable version "3.13.0", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed
-- Found Numpy: /usr/include (found version "1.26.4")
-- Found Cython: TRUE (found version "3.0.11")
-- Found Bash: /usr/bin/bash (found version "5.2.37")
-- Building BOUT++ Python interface
-- Found MPI_CXX: /usr/lib64/openmpi/bin/mpicxx (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- Enable OpenMP: OFF
-- HYPRE support: OFF
-- Found PkgConfig: /usr/bin/pkg-config (found version "2.3.0")
-- Checking for one of the modules 'PETSc>3.4.0;petsc>3.4.0'
-- Found PETSc: /usr/include/openmpi-x86_64/petsc
-- PETSc support: ON
-- Using external mpark.variant
-- Using external fmt
CMake Deprecation Warning at externalpackages/PVODE/CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.10 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
  to tell CMake that the project requires at least <min> but has been updated
  to work with policies introduced by <max> or earlier.


-- PVODE support: ON
-- Found netCDF: /usr/lib64/libnetcdf.so (found version "4.9.2")
-- Found netCDFCxx version 4.3.1
-- Found netCDFCxx: /usr/lib64/libnetcdf_c++4.so (found version "4.3.1")
-- NetCDF support: ON
CMake Warning at cmake/SetupBOUTThirdParty.cmake:217 (find_package):
  By not providing "FindADIOS2.cmake" in CMAKE_MODULE_PATH this project has
  asked CMake to find a package configuration file provided by "ADIOS2", but
  CMake did not find one.

  Could not find a package configuration file provided by "ADIOS2" with any
  of the following names:

    ADIOS2Config.cmake
    adios2-config.cmake

  Add the installation prefix of "ADIOS2" to CMAKE_PREFIX_PATH or set
  "ADIOS2_DIR" to a directory containing one of the above files.  If "ADIOS2"
  provides a separate development package or SDK, be sure it has been
  installed.
Call Stack (most recent call first):
  CMakeLists.txt:479 (include)


-- ADIOS2 support: OFF
-- Found FFTW: /usr/lib64/libfftw3.so
-- FFTW support: ON
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/lib64/libflexiblas.so
-- Looking for cheev_
-- Looking for cheev_ - found
-- Found LAPACK: /usr/lib64/libflexiblas.so;-lm;-ldl
-- LAPACK support: TRUE
-- SLEPc support: OFF
-- The C compiler identification is GNU 14.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/lib64/openmpi/bin/mpicc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- SUNDIALS support: ON
-- Found Gettext: /usr/bin/msgmerge (found version "0.22.5")
-- Found Intl: built in to C library
-- libuuid not found, using fallback UUID generator
-- UUID_SYSTEM_GENERATOR: FALSE
-- Enable coverage: OFF
-- Git revision: Unknown
-- Performing Test HAS_FLAG__Wnull_dereference
-- Performing Test HAS_FLAG__Wnull_dereference - Success
-- Warning flag is supported by compiler: -Wnull-dereference
-- Found negative flag: -Wno-cast-function-type
   replaced with -Wcast-function-type
-- Performing Test HAS_FLAG__Wno_cast_function_type
-- Performing Test HAS_FLAG__Wno_cast_function_type - Success
-- Warning flag is supported by compiler: -Wno-cast-function-type
-- Runtime checking level: CHECK=2
-- Message stack: BOUT_USE_MSGSTACK=ON
-- Extra debug output: BOUT_USE_OUTPUT_DEBUG=OFF
-- Signal handling: BOUT_USE_SIGNAL=ON
-- Output coloring: BOUT_USE_COLOR=ON
-- Field name tracking: BOUT_USE_TRACK=ON
-- Signalling floating point exceptions: BOUT_USE_SIGFPE=OFF
-- Enable backtrace: BOUT_USE_BACKTRACE=ON
-- Performing Test HAS_PRETTY_FUNCTION
-- Performing Test HAS_PRETTY_FUNCTION - Success
-- Setting build type to 'RelWithDebInfo' as none was specified.
-- Found Python3: /usr/bin/python3.13 (found version "3.13.0") found components: Interpreter
-- Not building test test-laplace-hypre3d, requirement not met: BOUT_HAS_HYPRE
-- Not building test test-laplacexy2-hypre, requirement not met: BOUT_HAS_HYPRE
-- Not building test test-options-adios, requirement not met: BOUT_HAS_ADIOS2
-- Not building test test-slepc-solver, requirement not met: BOUT_HAS_SLEPC
-- Not building test MMS-advection-arakawa, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-central, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-upwind, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-weno3, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-diffusion2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-hw, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-laplace, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-advection, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-d2dx2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-d2dz2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-diffusion, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-time, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-time-petsc, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building example test_laplacexy_hypre, requirement not met: BOUT_HAS_HYPRE
-- Found Doxygen: /usr/bin/doxygen (found version "1.12.0") found components: doxygen dot
-- Found Sphinx: /usr/bin/sphinx-build

   --------------------------------
     BOUT++ Configuration Summary
   --------------------------------

   Bundled PVODE support    : ON
   PETSc support            : ON
   SLEPc support            : OFF
   SUNDIALS support         : ON
   HYPRE support            : OFF
   NetCDF support           : ON
   ADIOS2 support           : OFF
   FFTW support             : ON
   LAPACK support           : TRUE
   OpenMP support           : OFF
   Natural language support : ON
   ScoreP support           : OFF
   System UUID generator    : FALSE
   Extra debug output       : OFF
   Runtime error check level: 2
   Signal handling          : ON
   Output coloring          : ON
   Field name tracking      : ON
   Floating point exceptions: OFF
   Backtrace enabled        : ON
   RAJA enabled             : OFF
   Umpire enabled           : OFF
   Caliper enabled          : OFF
   CUDA enabled             : OFF
   Metric type              : 2D
   Python API support       : ON
   Sanitizers enabled       : None

   === Python ===

   Make sure that the tools/pylib directory is in your PYTHONPATH
   e.g. by adding to your ~/.bashrc file

       export PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib:/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib:$PYTHONPATH

*** Now run `cmake --build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi` to compile BOUT++ ***

-- Configuring done (3.5s)
-- Generating done (0.3s)
CMake Warning:
  Manually-specified variables were not used by the project:

    BOUT_TEST_TIMEOUT
    CMAKE_CXX_FLAGS_RELEASE
    CMAKE_C_FLAGS_RELEASE
    CMAKE_Fortran_FLAGS_RELEASE
    CMAKE_INSTALL_DO_STRIP
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    LIB_SUFFIX
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR


-- Build files have been written to: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi
+ /usr/bin/cmake --build build_openmpi -j4 --verbose
Change Dir: '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'

Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4
/usr/bin/cmake -S/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f -B/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi//CMakeFiles/progress.marks
/usr/bin/gmake  -f CMakeFiles/Makefile2 all
gmake[1]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/gmake  -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend
/usr/bin/gmake  -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend
/usr/bin/gmake  -f CMakeFiles/mofiles.dir/build.make CMakeFiles/mofiles.dir/depend
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cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color="
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color="
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles/mofiles.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/gmake  -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/gmake  -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/gmake  -f CMakeFiles/mofiles.dir/build.make CMakeFiles/mofiles.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[  0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o
[  0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o
[  0%] Generating locale/es/libbout.gmo, _mo_file_es
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o -MF CMakeFiles/pvode.dir/source/nvector.cpp.o.d -o CMakeFiles/pvode.dir/source/nvector.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o -MF CMakeFiles/pvode.dir/source/cvode.cpp.o.d -o CMakeFiles/pvode.dir/source/cvode.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/locale/es/
[  0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -MF CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o.d -o CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/precon/pvbbdpre.cpp
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/locale/es/libbout.gmo /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/locale/es/libbout.po
[  0%] Generating locale/de/libbout.gmo, _mo_file_de
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/locale/de/
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:429: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  429 |   #pragma omp parallel for reduction(+: sum)
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/locale/de/libbout.gmo /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/locale/de/libbout.po
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:485: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  485 |   #pragma omp parallel for reduction(+: sum)
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:543: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  543 |   #pragma omp parallel for reduction(+: sum)
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:565: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  565 |   #pragma omp parallel for reduction(+: sum)
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:583: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  583 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:698: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  698 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:714: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  714 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:730: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  730 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:745: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  745 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:761: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  761 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:777: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  777 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:793: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  793 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:809: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  809 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:824: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  824 |     #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:831: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  831 |     #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:837: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  837 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:850: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  850 |   #pragma omp parallel for
[  2%] Generating locale/fr/libbout.gmo, _mo_file_fr
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/locale/fr/
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/locale/fr/libbout.gmo /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/locale/fr/libbout.po
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp: In function ‘void pvode::N_VLinearSum(real, N_Vector, real, N_Vector, N_Vector)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:189:12: warning: unused variable ‘v’ [-Wunused-variable]
  189 |   N_Vector v, v1, v2;
      |            ^
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp: In function ‘pvode::real pvode::N_VWL2Norm(N_Vector, N_Vector)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:533:14: warning: variable ‘N_global’ set but not used [-Wunused-but-set-variable]
  533 |   integer N, N_global;
      |              ^~~~~~~~
[  2%] Generating locale/zh_CN/libbout.gmo, _mo_file_zh_CN
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/locale/zh_CN/
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/locale/zh_CN/libbout.gmo /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/locale/zh_CN/libbout.po
[  2%] Generating locale/zh_TW/libbout.gmo, _mo_file_zh_TW
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/locale/zh_TW/
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/locale/zh_TW/libbout.gmo /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/locale/zh_TW/libbout.po
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[  2%] Built target mofiles
[  2%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o -MF CMakeFiles/pvpre.dir/precon/band.cpp.o.d -o CMakeFiles/pvpre.dir/precon/band.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/precon/band.cpp
[  5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o -MF CMakeFiles/pvode.dir/source/llnlmath.cpp.o.d -o CMakeFiles/pvode.dir/source/llnlmath.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/llnlmath.cpp
[  5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -MF CMakeFiles/pvode.dir/source/cvspgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvspgmr.cpp
[  5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o -MF CMakeFiles/pvode.dir/source/spgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/spgmr.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp
[  8%] Linking CXX shared library ../../lib/libpvpre.so
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvpre.dir/link.txt --verbose=1
In function ‘pvode::CVnlsFunctional(pvode::CVodeMemRec*)’,
    inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1826:45,
    inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1358:18,
    inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:882:19:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1876:49: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized]
 1876 |     if ((m==maxcor) || ((m >= 2) && (del > RDIV * delp)))
      |                                                 ^
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1843:13: note: ‘delp’ was declared here
 1843 |   real del, delp, dcon;
      |             ^~~~
In function ‘pvode::CVNewtonIteration(pvode::CVodeMemRec*)’,
    inlined from ‘pvode::CVnlsNewton(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1944:28,
    inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1827:41,
    inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1358:18,
    inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:882:19:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:2021:50: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized]
 2021 |     if ((m == maxcor) || ((m >= 2) && (del > RDIV*delp))) {
      |                                                  ^
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1971:13: note: ‘delp’ was declared here
 1971 |   real del, delp, dcon;
      |             ^~~~
[  8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp: In function ‘int pvode::SpgmrSolve(SpgmrMem, void*, N_Vector, N_Vector, int, int, real, int, void*, N_Vector, N_Vector, ATimesFn, PSolveFn, real*, int*, int*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp:159:8: warning: unused variable ‘s_r0_norm’ [-Wunused-variable]
  159 |   real s_r0_norm, beta, rotation_product, r_norm, s_product, rho;
      |        ^~~~~~~~~
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o -MF CMakeFiles/pvode.dir/source/iterativ.cpp.o.d -o CMakeFiles/pvode.dir/source/iterativ.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/iterativ.cpp
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp:328:17: warning: ‘krydim’ may be used uninitialized [-Wmaybe-uninitialized]
  328 |     for (i=1; i <= krydim; i++) yg[i]=ZERO;
      |               ~~^~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp:161:36: note: ‘krydim’ was declared here
  161 |   int i, j, k, l, l_plus_1, l_max, krydim, ier, ntries;
      |                                    ^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp:386:3: warning: ‘rho’ may be used uninitialized [-Wmaybe-uninitialized]
  386 |   if (rho < beta) {
      |   ^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp:159:62: note: ‘rho’ was declared here
  159 |   real s_r0_norm, beta, rotation_product, r_norm, s_product, rho;
      |                                                              ^~~
[ 11%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o -MF CMakeFiles/pvode.dir/source/cvdiag.cpp.o.d -o CMakeFiles/pvode.dir/source/cvdiag.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvdiag.cpp
[ 11%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o -MF CMakeFiles/pvode.dir/source/smalldense.cpp.o.d -o CMakeFiles/pvode.dir/source/smalldense.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/smalldense.cpp
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/smalldense.cpp: In function ‘pvode::integer pvode::gefa(real**, integer, integer*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/smalldense.cpp:82:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   82 |     if (swap = (l != k)) {
      |         ~~~~~^~~~~~~~~~
/usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file=CMakeFiles/pvpre.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvpre.so.1.0.0 -o ../../lib/libpvpre.so.1.0.0 CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o CMakeFiles/pvpre.dir/precon/band.cpp.o  -Wl,-rpath,:::::::::::::::::::::::::::
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 11%] Built target pvpre
[ 11%] Linking CXX shared library ../../lib/libpvode.so
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvode.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file=CMakeFiles/pvode.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvode.so.1.0.0 -o ../../lib/libpvode.so.1.0.0 CMakeFiles/pvode.dir/source/cvode.cpp.o CMakeFiles/pvode.dir/source/nvector.cpp.o CMakeFiles/pvode.dir/source/llnlmath.cpp.o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o CMakeFiles/pvode.dir/source/spgmr.cpp.o CMakeFiles/pvode.dir/source/iterativ.cpp.o CMakeFiles/pvode.dir/source/cvdiag.cpp.o CMakeFiles/pvode.dir/source/smalldense.cpp.o  -Wl,-rpath,:::::::::::::::::::::::::::
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 11%] Built target pvode
/usr/bin/gmake  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 14%] Generating bout++-time.cxx
/usr/bin/cmake -P /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/cmake/GenerateDateTimeFile.cmake
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles/bout++.dir/DependInfo.cmake "--color="
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/bout++.cxx.o -MF CMakeFiles/bout++.dir/src/bout++.cxx.o.d -o CMakeFiles/bout++.dir/src/bout++.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field2d.cxx.o -MF CMakeFiles/bout++.dir/src/field/field2d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field2d.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/field2d.cxx
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field3d.cxx.o -MF CMakeFiles/bout++.dir/src/field/field3d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field3d.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/field3d.cxx
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[ 20%] Building CXX object CMakeFiles/bout++.dir/src/field/globalfield.cxx.o
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/initialprofiles.cxx.o -MF CMakeFiles/bout++.dir/src/field/initialprofiles.cxx.o.d -o CMakeFiles/bout++.dir/src/field/initialprofiles.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/initialprofiles.cxx
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/vecops.cxx.o -MF CMakeFiles/bout++.dir/src/field/vecops.cxx.o.d -o CMakeFiles/bout++.dir/src/field/vecops.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/vecops.cxx
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/vector2d.cxx.o -MF CMakeFiles/bout++.dir/src/field/vector2d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/vector2d.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/vector2d.cxx
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr_thomas/pcr_thomas.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr_thomas/pcr_thomas.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr_thomas/pcr_thomas.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplace/impls/pcr_thomas/pcr_thomas.cxx
[ 31%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/petsc/petsc_laplace.cxx.o
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[ 34%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/serial_tri/serial_tri.cxx.o
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[ 34%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/spt/spt.cxx.o
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[ 34%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx.o
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[ 34%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/invert_laplace.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/invert_laplace.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/invert_laplace.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/invert_laplace.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplace/invert_laplace.cxx
[ 37%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexy/laplacexy.cxx
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexy2/laplacexy2.cxx
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In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexy2/laplacexy2_hypre.cxx:1:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invert/laplacexy2_hypre.hxx:41:2: warning: #warning LaplaceXY requires Hypre. No LaplaceXY available [-Wcpp]
   41 | #warning LaplaceXY requires Hypre. No LaplaceXY available
      |  ^~~~~~~
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_factory.cxx
[ 42%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_region.cxx
[ 42%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx
[ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/coordinates.cxx
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx: In function ‘void verifyNumPoints(BoundaryRegion*, int)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:80:21: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
   80 |     if (mesh->firstY()) {
      |         ~~~~~~~~~~~~^~
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field_factory.hxx:32,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/boundary_standard.hxx:9,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:1:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:447:66: note: declared here
  447 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:83:20: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
   83 |     if (mesh->lastY()) {
      |         ~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:451:65: note: declared here
  451 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:473:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  473 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  474 |                                t);
      |                                ~~
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field_data.hxx:50,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field.hxx:39,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field2d.hxx:34,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/boundary_op.hxx:9,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/boundary_standard.hxx:6:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:517:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  517 |               val = fg->generate(xnorm, TWOPI * ynorm,
      |                     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
  518 |                                  TWOPI * (zk - 0.5) / (mesh->LocalNz), t);
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O3::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:978:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  978 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  979 |                                t);
      |                                ~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O4::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:1444:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
 1444 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1445 |                                t);
      |                                ~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryNeumann::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:2152:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
 2152 |               val = fg->generate(xnorm, TWOPI * ynorm,
      |                     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
 2153 |                                  TWOPI * (zk - 0.5) / (mesh->LocalNz), t);
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
[ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/coordinates_accessor.cxx
[ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/data/gridfromfile.cxx
[ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/data/gridfromoptions.cxx
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/difops.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/difops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/difops.cxx
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/fv_ops.cxx
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/fv_ops.cxx: In function ‘FV::communicateFluxes(Field3D&)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/fv_ops.cxx:471:15: warning: ‘xout’ may be used uninitialized [-Wmaybe-uninitialized]
  471 |     mesh->wait(xout);
      |     ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/fv_ops.cxx:442:20: note: ‘xout’ was declared here
  442 |   comm_handle xin, xout;
      |                    ^~~~
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/index_derivs.cxx
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation_xz.cxx
In file included from /usr/include/c++/14/bits/shared_ptr.h:53,
                 from /usr/include/c++/14/memory:80,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field.hxx:36,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field2d.hxx:34,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/options.hxx:43,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/deriv_store.hxx:42,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:48,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.hxx:8,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:36:
In member function ‘std::__shared_ptr<ArrayData<double>, (__gnu_cxx::_Lock_policy)2>::operator bool() const’,
    inlined from ‘std::operator==<ArrayData<double> >(std::shared_ptr<ArrayData<double> > const&, decltype(nullptr))bool’ at /usr/include/c++/14/bits/shared_ptr.h:561:14,
    inlined from ‘Array<double, ArrayData<double> >::empty() const’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/array.hxx:270:44,
    inlined from ‘Field3D::isAllocated() const’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field3d.hxx:204:48,
    inlined from ‘BoutMesh::pack_data(std::vector<FieldData*, std::allocator<FieldData*> > const&, int, int, int, int, double*)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:2300:7:
/usr/include/c++/14/bits/shared_ptr_base.h:1671:16: warning: potential null pointer dereference [-Wnull-dereference]
 1671 |       { return _M_ptr != nullptr; }
      |                ^~~~~~
In member function ‘std::__shared_ptr<ArrayData<double>, (__gnu_cxx::_Lock_policy)2>::operator bool() const’,
    inlined from ‘std::operator==<ArrayData<double> >(std::shared_ptr<ArrayData<double> > const&, decltype(nullptr))bool’ at /usr/include/c++/14/bits/shared_ptr.h:561:14,
    inlined from ‘Array<double, ArrayData<double> >::empty() const’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/array.hxx:270:44,
    inlined from ‘Field2D::isAllocated() const’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field2d.hxx:106:48,
    inlined from ‘BoutMesh::pack_data(std::vector<FieldData*, std::allocator<FieldData*> > const&, int, int, int, int, double*)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:2311:7:
/usr/include/c++/14/bits/shared_ptr_base.h:1671:16: warning: potential null pointer dereference [-Wnull-dereference]
 1671 |       { return _M_ptr != nullptr; }
      |                ^~~~~~
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/bilinear_xz.cxx
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/hermite_spline_xz.cxx
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/hermite_spline_z.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/interpolation_z.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/lagrange_4pt_xz.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/shiftedmetric.cxx
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/shiftedmetricinterp.cxx
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel_boundary_op.cxx
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel_boundary_region.cxx
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/adams_bashforth/adams_bashforth.cxx
[ 65%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx
[ 65%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In destructor ‘virtual ArkodeSolver::~ArkodeSolver()’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:154:14: warning: ‘void ARKStepFree(void**)’ is deprecated: use ARKodeFree instead [-Wdeprecated-declarations]
  154 |   ARKStepFree(&arkode_mem);
      |   ~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:43:
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:399:6: note: declared here
  399 | void ARKStepFree(void** arkode_mem);
      |      ^~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘virtual int ArkodeSolver::init()’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:240:25: warning: ‘int ARKStepSetUserData(void*, void*)’ is deprecated: use ARKodeSetUserData instead [-Wdeprecated-declarations]
  240 |   if (ARKStepSetUserData(arkode_mem, this) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:229:5: note: declared here
  229 | int ARKStepSetUserData(void* arkode_mem, void* user_data);
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:244:23: warning: ‘int ARKStepSetLinear(void*, int)’ is deprecated: use ARKodeSetLinear instead [-Wdeprecated-declarations]
  244 |   if (ARKStepSetLinear(arkode_mem, set_linear) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:148:5: note: declared here
  148 | int ARKStepSetLinear(void* arkode_mem, int timedepend);
      |     ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:251:28: warning: ‘int ARKStepSetFixedStep(void*, sunrealtype)’ is deprecated: use ARKodeSetFixedStep instead [-Wdeprecated-declarations]
  251 |     if (ARKStepSetFixedStep(arkode_mem, fixed_timestep) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:221:5: note: declared here
  221 | int ARKStepSetFixedStep(void* arkode_mem, sunrealtype hfixed);
      |     ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:256:22: warning: ‘int ARKStepSetOrder(void*, int)’ is deprecated: use ARKodeSetOrder instead [-Wdeprecated-declarations]
  256 |   if (ARKStepSetOrder(arkode_mem, order) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:136:5: note: declared here
  136 | int ARKStepSetOrder(void* arkode_mem, int maxord);
      |     ^~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:272:28: warning: ‘int ARKStepSetCFLFraction(void*, sunrealtype)’ is deprecated: use ARKodeSetCFLFraction instead [-Wdeprecated-declarations]
  272 |   if (ARKStepSetCFLFraction(arkode_mem, cfl_frac) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:158:5: note: declared here
  158 | int ARKStepSetCFLFraction(void* arkode_mem, sunrealtype cfl_frac);
      |     ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:300:32: warning: ‘int ARKStepSetAdaptController(void*, SUNAdaptController)’ is deprecated: use ARKodeSetAdaptController instead [-Wdeprecated-declarations]
  300 |   if (ARKStepSetAdaptController(arkode_mem, controller) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:154:5: note: declared here
  154 | int ARKStepSetAdaptController(void* arkode_mem, SUNAdaptController C);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:304:37: warning: ‘int ARKStepSetAdaptivityAdjustment(void*, int)’ is deprecated: use ARKodeSetAdaptivityAdjustment instead [-Wdeprecated-declarations]
  304 |   if (ARKStepSetAdaptivityAdjustment(arkode_mem, 0) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:156:5: note: declared here
  156 | int ARKStepSetAdaptivityAdjustment(void* arkode_mem, int adjust);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:368:28: warning: ‘int ARKStepSVtolerances(void*, sunrealtype, N_Vector)’ is deprecated: use ARKodeSVtolerances instead [-Wdeprecated-declarations]
  368 |     if (ARKStepSVtolerances(arkode_mem, reltol, abstolvec) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:115:5: note: declared here
  115 | int ARKStepSVtolerances(void* arkode_mem, sunrealtype reltol, N_Vector abstol);
      |     ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:374:28: warning: ‘int ARKStepSStolerances(void*, sunrealtype, sunrealtype)’ is deprecated: use ARKodeSStolerances instead [-Wdeprecated-declarations]
  374 |     if (ARKStepSStolerances(arkode_mem, reltol, abstol) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:113:5: note: declared here
  113 | int ARKStepSStolerances(void* arkode_mem, sunrealtype reltol, sunrealtype abstol);
      |     ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:379:28: warning: ‘int ARKStepSetMaxNumSteps(void*, long int)’ is deprecated: use ARKodeSetMaxNumSteps instead [-Wdeprecated-declarations]
  379 |   if (ARKStepSetMaxNumSteps(arkode_mem, mxsteps) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:205:5: note: declared here
  205 | int ARKStepSetMaxNumSteps(void* arkode_mem, long int mxsteps);
      |     ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:384:26: warning: ‘int ARKStepSetMaxStep(void*, sunrealtype)’ is deprecated: use ARKodeSetMaxStep instead [-Wdeprecated-declarations]
  384 |     if (ARKStepSetMaxStep(arkode_mem, max_timestep) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:213:5: note: declared here
  213 | int ARKStepSetMaxStep(void* arkode_mem, sunrealtype hmax);
      |     ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:390:26: warning: ‘int ARKStepSetMinStep(void*, sunrealtype)’ is deprecated: use ARKodeSetMinStep instead [-Wdeprecated-declarations]
  390 |     if (ARKStepSetMinStep(arkode_mem, min_timestep) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:211:5: note: declared here
  211 | int ARKStepSetMinStep(void* arkode_mem, sunrealtype hmin);
      |     ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:396:27: warning: ‘int ARKStepSetInitStep(void*, sunrealtype)’ is deprecated: use ARKodeSetInitStep instead [-Wdeprecated-declarations]
  396 |     if (ARKStepSetInitStep(arkode_mem, start_timestep) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:209:5: note: declared here
  209 | int ARKStepSetInitStep(void* arkode_mem, sunrealtype hin);
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:408:36: warning: ‘int ARKStepSetNonlinearSolver(void*, SUNNonlinearSolver)’ is deprecated: use ARKodeSetNonlinearSolver instead [-Wdeprecated-declarations]
  408 |       if (ARKStepSetNonlinearSolver(arkode_mem, nonlinear_solver) != ARK_SUCCESS) {
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:144:5: note: declared here
  144 | int ARKStepSetNonlinearSolver(void* arkode_mem, SUNNonlinearSolver NLS);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:420:33: warning: ‘int ARKStepSetLinearSolver(void*, SUNLinearSolver, SUNMatrix)’ is deprecated: use ARKodeSetLinearSolver instead [-Wdeprecated-declarations]
  420 |       if (ARKStepSetLinearSolver(arkode_mem, sun_solver, nullptr) != ARKLS_SUCCESS) {
      |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:125:5: note: declared here
  125 | int ARKStepSetLinearSolver(void* arkode_mem, SUNLinearSolver LS, SUNMatrix A);
      |     ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:429:39: warning: ‘int ARKStepSetPreconditioner(void*, ARKLsPrecSetupFn, ARKLsPrecSolveFn)’ is deprecated: use ARKodeSetPreconditioner instead [-Wdeprecated-declarations]
  429 |           if (ARKStepSetPreconditioner(arkode_mem, nullptr, arkode_pre)
      |               ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:253:5: note: declared here
  253 | int ARKStepSetPreconditioner(void* arkode_mem, ARKLsPrecSetupFn psetup,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:483:29: warning: ‘int ARKStepSetJacTimes(void*, ARKLsJacTimesSetupFn, ARKLsJacTimesVecFn)’ is deprecated: use ARKodeSetJacTimes instead [-Wdeprecated-declarations]
  483 |       if (ARKStepSetJacTimes(arkode_mem, nullptr, arkode_jac) != ARKLS_SUCCESS) {
      |           ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:259:5: note: declared here
  259 | int ARKStepSetJacTimes(void* arkode_mem, ARKLsJacTimesSetupFn jtsetup,
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:493:32: warning: ‘int ARKStepSetOptimalParams(void*)’ is deprecated: adjust parameters individually instead [-Wdeprecated-declarations]
  493 |     if (ARKStepSetOptimalParams(arkode_mem) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:134:5: note: declared here
  134 | int ARKStepSetOptimalParams(void* arkode_mem);
      |     ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘virtual int ArkodeSolver::run()’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:526:23: warning: ‘int ARKStepGetNumSteps(void*, long int*)’ is deprecated: use ARKodeGetNumSteps instead [-Wdeprecated-declarations]
  526 |     ARKStepGetNumSteps(arkode_mem, &temp_long_int);
      |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:290:5: note: declared here
  290 | int ARKStepGetNumSteps(void* arkode_mem, long int* nsteps);
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:532:35: warning: ‘int ARKStepGetNumNonlinSolvIters(void*, long int*)’ is deprecated: use ARKodeGetNumNonlinSolvIters instead [-Wdeprecated-declarations]
  532 |       ARKStepGetNumNonlinSolvIters(arkode_mem, &temp_long_int);
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:337:5: note: declared here
  337 | int ARKStepGetNumNonlinSolvIters(void* arkode_mem, long int* nniters);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:534:29: warning: ‘int ARKStepGetNumPrecEvals(void*, long int*)’ is deprecated: use ARKodeGetNumPrecEvals instead [-Wdeprecated-declarations]
  534 |       ARKStepGetNumPrecEvals(arkode_mem, &temp_long_int);
      |       ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:357:5: note: declared here
  357 | int ARKStepGetNumPrecEvals(void* arkode_mem, long int* npevals);
      |     ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:536:28: warning: ‘int ARKStepGetNumLinIters(void*, long int*)’ is deprecated: use ARKodeGetNumLinIters instead [-Wdeprecated-declarations]
  536 |       ARKStepGetNumLinIters(arkode_mem, &temp_long_int);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:361:5: note: declared here
  361 | int ARKStepGetNumLinIters(void* arkode_mem, long int* nliters);
      |     ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘BoutReal ArkodeSolver::run(BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:574:25: warning: ‘int ARKStepEvolve(void*, sunrealtype, N_Vector, sunrealtype*, int)’ is deprecated: use ARKodeEvolve instead [-Wdeprecated-declarations]
  574 |     flag = ARKStepEvolve(arkode_mem, tout, uvec, &simtime, ARK_NORMAL);
      |            ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:269:5: note: declared here
  269 | int ARKStepEvolve(void* arkode_mem, sunrealtype tout, N_Vector yout,
      |     ^~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:578:26: warning: ‘int ARKStepGetCurrentTime(void*, sunrealtype*)’ is deprecated: use ARKodeGetCurrentTime instead [-Wdeprecated-declarations]
  578 |     ARKStepGetCurrentTime(arkode_mem, &internal_time);
      |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:298:5: note: declared here
  298 | int ARKStepGetCurrentTime(void* arkode_mem, sunrealtype* tcur);
      |     ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:582:27: warning: ‘int ARKStepEvolve(void*, sunrealtype, N_Vector, sunrealtype*, int)’ is deprecated: use ARKodeEvolve instead [-Wdeprecated-declarations]
  582 |       flag = ARKStepEvolve(arkode_mem, tout, uvec, &internal_time, ARK_ONE_STEP);
      |              ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:269:5: note: declared here
  269 | int ARKStepEvolve(void* arkode_mem, sunrealtype tout, N_Vector yout,
      |     ^~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:594:25: warning: ‘int ARKStepGetDky(void*, sunrealtype, int, N_Vector)’ is deprecated: use ARKodeGetDky instead [-Wdeprecated-declarations]
  594 |     flag = ARKStepGetDky(arkode_mem, tout, 0, uvec);
      |            ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:272:5: note: declared here
  272 | int ARKStepGetDky(void* arkode_mem, sunrealtype t, int k, N_Vector dky);
      |     ^~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘void ArkodeSolver::rhs_e(BoutReal, BoutReal*, BoutReal*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:624:21: warning: ‘int ARKStepGetLastStep(void*, sunrealtype*)’ is deprecated: use ARKodeGetLastStep instead [-Wdeprecated-declarations]
  624 |   ARKStepGetLastStep(arkode_mem, &hcur);
      |   ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:294:5: note: declared here
  294 | int ARKStepGetLastStep(void* arkode_mem, sunrealtype* hlast);
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘void ArkodeSolver::rhs_i(BoutReal, BoutReal*, BoutReal*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:641:21: warning: ‘int ARKStepGetLastStep(void*, sunrealtype*)’ is deprecated: use ARKodeGetLastStep instead [-Wdeprecated-declarations]
  641 |   ARKStepGetLastStep(arkode_mem, &hcur);
      |   ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:294:5: note: declared here
  294 | int ARKStepGetLastStep(void* arkode_mem, sunrealtype* hlast);
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘void ArkodeSolver::rhs(BoutReal, BoutReal*, BoutReal*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:654:21: warning: ‘int ARKStepGetLastStep(void*, sunrealtype*)’ is deprecated: use ARKodeGetLastStep instead [-Wdeprecated-declarations]
  654 |   ARKStepGetLastStep(arkode_mem, &hcur);
      |   ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/arkode/arkode_arkstep.h:294:5: note: declared here
  294 | int ARKStepGetLastStep(void* arkode_mem, sunrealtype* hlast);
      |     ^~~~~~~~~~~~~~~~~~
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[ 80%] Building CXX object CMakeFiles/bout++.dir/src/sys/bout_types.cxx.o
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[ 80%] Building CXX object CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o
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[ 80%] Building CXX object CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o -MF CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutexception.cxx
[ 80%] Building CXX object CMakeFiles/bout++.dir/src/sys/derivs.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/derivs.cxx.o -MF CMakeFiles/bout++.dir/src/sys/derivs.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/derivs.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/derivs.cxx
[ 80%] Building CXX object CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o -MF CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/expressionparser.cxx
[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o -MF CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/generator_context.cxx
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/expressionparser.cxx: In member function ‘virtual double FieldGenerator::generate(const bout::generator::Context&)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/expressionparser.cxx:43:18: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
   43 |   return generate(ctx.x(), ctx.y(), ctx.z(), ctx.t());
      |          ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/expressionparser.cxx:25:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o -MF CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/hyprelib.cxx
[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o
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[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/options.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options.cxx
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_ini.cxx
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options/options_io.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options/options_io.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options/options_io.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options/options_io.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_adios.cxx
[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o -MF CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/optionsreader.cxx
In file included from /usr/include/openmpi-x86_64/ncFile.h:2,
                 from /usr/include/openmpi-x86_64/netcdf:16,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.hxx:22,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:7:
/usr/include/openmpi-x86_64/ncGroup.h:18:14: warning: ‘netCDF::file_id’ defined but not used [-Wunused-variable]
   18 |   static int file_id;
      |              ^~~~~~~
In file included from /usr/include/openmpi-x86_64/ncFile.h:2,
                 from /usr/include/openmpi-x86_64/netcdf:16,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.hxx:22,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:5:
/usr/include/openmpi-x86_64/ncGroup.h:18:14: warning: ‘netCDF::file_id’ defined but not used [-Wunused-variable]
   18 |   static int file_id;
      |              ^~~~~~~
[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/output.cxx.o
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CMakeFiles/bout++.dir/src/field/field3d.cxx.o CMakeFiles/bout++.dir/src/field/field_data.cxx.o CMakeFiles/bout++.dir/src/field/field_factory.cxx.o CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o CMakeFiles/bout++.dir/src/field/fieldgroup.cxx.o CMakeFiles/bout++.dir/src/field/fieldperp.cxx.o CMakeFiles/bout++.dir/src/field/generated_fieldops.cxx.o CMakeFiles/bout++.dir/src/field/globalfield.cxx.o CMakeFiles/bout++.dir/src/field/initialprofiles.cxx.o CMakeFiles/bout++.dir/src/field/vecops.cxx.o CMakeFiles/bout++.dir/src/field/vector2d.cxx.o CMakeFiles/bout++.dir/src/field/vector3d.cxx.o CMakeFiles/bout++.dir/src/field/where.cxx.o CMakeFiles/bout++.dir/src/invert/fft_fftw.cxx.o CMakeFiles/bout++.dir/src/invert/lapack_routines.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/iterative_parallel_tri/iterative_parallel_tri.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/multigrid/multigrid_alg.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/multigrid/multigrid_laplace.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/multigrid/multigrid_solver.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/naulin/naulin_laplace.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr/pcr.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr_thomas/pcr_thomas.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/petsc/petsc_laplace.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/petsc3damg/petsc3damg.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/serial_band/serial_band.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/serial_tri/serial_tri.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/spt/spt.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/invert_laplace.cxx.o CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o "CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o" "CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o" CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o CMakeFiles/bout++.dir/src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx.o CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o CMakeFiles/bout++.dir/src/mesh/difops.cxx.o CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o CMakeFiles/bout++.dir/src/physics/snb.cxx.o CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o "CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o" CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o CMakeFiles/bout++.dir/src/solver/impls/power/power.cxx.o CMakeFiles/bout++.dir/src/solver/impls/pvode/pvode.cxx.o "CMakeFiles/bout++.dir/src/solver/impls/rk3-ssp/rk3-ssp.cxx.o" CMakeFiles/bout++.dir/src/solver/impls/rk4/rk4.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/rkgeneric.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/rkscheme.cxx.o CMakeFiles/bout++.dir/src/solver/impls/slepc/slepc.cxx.o CMakeFiles/bout++.dir/src/solver/impls/snes/snes.cxx.o "CMakeFiles/bout++.dir/src/solver/impls/split-rk/split-rk.cxx.o" CMakeFiles/bout++.dir/src/solver/solver.cxx.o CMakeFiles/bout++.dir/src/sys/adios_object.cxx.o CMakeFiles/bout++.dir/src/sys/bout_types.cxx.o CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o CMakeFiles/bout++.dir/src/sys/derivs.cxx.o CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o CMakeFiles/bout++.dir/src/sys/options.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_io.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o CMakeFiles/bout++.dir/src/sys/output.cxx.o CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o CMakeFiles/bout++.dir/src/sys/range.cxx.o CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o CMakeFiles/bout++.dir/src/sys/timer.cxx.o CMakeFiles/bout++.dir/src/sys/type_name.cxx.o CMakeFiles/bout++.dir/src/sys/utils.cxx.o "CMakeFiles/bout++.dir/bout++-time.cxx.o"  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib: /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/libfmt.so.11.0.2 lib/libpvode.so.1.0.0 lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl -ldl /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libnetcdf.so /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundialsIn member function ‘__ct ’,
    inlined from ‘_Construct’ at /usr/include/c++/14/bits/stl_construct.h:119:7,
    inlined from ‘construct’ at /usr/include/c++/14/bits/alloc_traits.h:694:19,
    inlined from ‘__ct ’ at /usr/include/c++/14/bits/shared_ptr_base.h:607:39,
    inlined from ‘__ct ’ at /usr/include/c++/14/bits/shared_ptr_base.h:969:16,
    inlined from ‘__ct ’ at /usr/include/c++/14/bits/shared_ptr_base.h:1713:14,
    inlined from ‘__ct ’ at /usr/include/c++/14/bits/shared_ptr.h:463:59,
    inlined from ‘make_shared’ at /usr/include/c++/14/bits/shared_ptr.h:1008:39,
    inlined from ‘get’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/array.hxx:428:38,
    inlined from ‘reallocate’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/array.hxx:226:14,
    inlined from ‘__ct_base ’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplace/impls/spt/spt.cxx:68:21:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/array.hxx:75:12: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   75 |     data = new T[len];
      |            ^
/usr/include/c++/14/new: In member function ‘__ct_base ’:
/usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here
  133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1
/usr/bin/cmake -E cmake_symlink_library lib/libbout++.so.5.1.0 lib/libbout++.so.5.1.0 lib/libbout++.so
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 94%] Built target bout++
/usr/bin/gmake  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 94%] Generating resolve_enum.pxd
[ 94%] Generating helper.cxx
[ 94%] Generating boutpp.pyx
[ 97%] Generating boutcpp.pxd
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.13 generate.py resolve_enum.pxd.jinja /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/resolve_enum.pxd
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.13 generate.py boutpp.pyx.jinja /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/boutpp.pyx
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.13 generate.py boutcpp.pxd.jinja /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/boutcpp.pxd
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.13 generate.py helper.cxx.jinja /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.cxx
[ 97%] Generating helper.h
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.13 generate.py helper.h.jinja /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h
[ 97%] Generating libboutpp.cpp
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy boutpp.pyx libboutpp.pyx
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/python3.13 -m cython libboutpp.pyx --cplus -3 -X binding=True -X embedsignature=True
warning: resolve_enum.pxd:49:21: 'deflt' redeclared 
warning: resolve_enum.pxd:189:24: 'Standard' redeclared 
warning: resolve_enum.pxd:223:15: 'Standard' redeclared 
performance hint: libboutpp.pyx:2103:5: Exception check on 'callback' will always require the GIL to be acquired.
Possible solutions:
	1. Declare 'callback' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
	2. Use an 'int' return type on 'callback' to allow an error code to be returned.
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/gmake  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 97%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/helper.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_313_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build -I/usr/include/python3.13 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/helper.cxx.o -MF CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/helper.cxx.o.d -o CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/helper.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.cxx
[100%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/libboutpp.cpp.o
[ 97%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/boutexception_helper.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_313_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build -I/usr/include/python3.13 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/boutexception_helper.cxx.o -MF CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/boutexception_helper.cxx.o.d -o CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/boutexception_helper.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/boutexception_helper.cxx
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_313_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build -I/usr/include/python3.13 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/libboutpp.cpp.o -MF CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/libboutpp.cpp.o.d -o CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/libboutpp.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp
In file included from /usr/include/numpy/ndarraytypes.h:1929,
                 from /usr/include/numpy/ndarrayobject.h:12,
                 from /usr/include/numpy/arrayobject.h:5,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:1268:
/usr/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:41693:46: warning: ‘__pyx_obj_9libboutpp_Vector2D* __pyx_f_9libboutpp_v2dFromObj(Vector2D)’ defined but not used [-Wunused-function]
41693 | static struct __pyx_obj_9libboutpp_Vector2D *__pyx_f_9libboutpp_v2dFromObj(Vector2D __pyx_v_i) {
      |                                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp: In function ‘__pyx_f_12resolve_enum_resolve_cell_loc(_object*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:9392:10: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized]
 9392 |   return __pyx_r;
      |          ^~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:9035:12: note: ‘__pyx_r’ was declared here
 9035 |   CELL_LOC __pyx_r;
      |            ^~~~~~~
In function ‘__pyx_pf_9libboutpp_54bracket(_object*, __pyx_obj_9libboutpp_Field3D*, __pyx_obj_9libboutpp_Field3D*, _object*, _object*)’,
    inlined from ‘__pyx_pw_9libboutpp_55bracket(_object*, _object* const*, long, _object*)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:66609:42:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:66703:65: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized]
66703 |   __pyx_t_1 = ((PyObject *)__pyx_f_9libboutpp_f3dFromObj(bracket((__pyx_v_a->cobj[0]), (__pyx_v_b->cobj[0]), __pyx_v_method_, __pyx_v_outloc_))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 3044, __pyx_L1_error)
      |                                                          ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp: In function ‘__pyx_pw_9libboutpp_55bracket(_object*, _object* const*, long, _object*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:10903:18: note: ‘__pyx_r’ was declared here
10903 |   BRACKET_METHOD __pyx_r;
      |                  ^~~~~~~
[100%] Linking CXX shared library libboutpp.cpython-313-x86_64-linux-gnu.so
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E cmake_link_script CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file=CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libboutpp.cpython-313-x86_64-linux-gnu.so -o libboutpp.cpython-313-x86_64-linux-gnu.so "CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/libboutpp.cpp.o" "CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/helper.cxx.o" "CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/boutexception_helper.cxx.o"  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib: ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target boutpp.cpython-313-x86_64-linux-gnu
/usr/bin/gmake  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/gmake  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Building python interface
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpython-313-x86_64-linux-gnu.so /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-313-x86_64-linux-gnu.so
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/../boutpp/__init__.py
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target boutpp
gmake[1]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles 0

+ PYPA=
+ LDPA=/usr/lib64/openmpi/lib
++ pwd
+ export PYTHONPATH=:/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/
+ PYTHONPATH=:/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/
++ pwd
+ export LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib/
+ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib/
+ /usr/bin/cmake --build build_openmpi/manual -j4 --verbose
Change Dir: '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual'

Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -S/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f -B/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual//CMakeFiles/progress.marks
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/gmake  -f CMakeFiles/Makefile2 manual/all
gmake[1]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/gmake  -f manual/CMakeFiles/sphinx-html.dir/build.make manual/CMakeFiles/sphinx-html.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual/CMakeFiles/sphinx-html.dir/DependInfo.cmake "--color="
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[100%] Generating HTML documentation with Sphinx in /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual/docs
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual && /usr/bin/sphinx-build -b html /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual/docs
Running Sphinx v7.3.7
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/usr/lib/python3.13/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:5: ERROR: Unexpected indentation.
/usr/lib/python3.13/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:6: WARNING: Block quote ends without a blank line; unexpected unindent.
/usr/lib/python3.13/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:56: WARNING: Footnote [1] is not referenced.
docstring of libboutpp.PhysicsModel:14: ERROR: Unexpected indentation.
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/boutpp/__init__.py:docstring of libboutpp.create3D:3: ERROR: Unexpected indentation.
WARNING: autodoc: failed to import module 'analyse_equil_2' from module 'boututils'; the following exception was raised:
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/usr/lib/python3.13/site-packages/boututils/calculus.py:docstring of boututils.calculus.deriv2D:14: ERROR: Unexpected indentation.
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WARNING: autodoc: failed to import module 'mode_structure' from module 'boututils'; the following exception was raised:
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WARNING: autodoc: failed to import module 'moment_xyzt' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'radial_grid' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'spectrogram' from module 'boututils'; the following exception was raised:
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/usr/lib/python3.13/site-packages/zoidberg/field.py:docstring of zoidberg.field.DommaschkPotentials:3: ERROR: Unexpected indentation.
looking for now-outdated files... /usr/lib/python3.13/site-packages/zoidberg/field.py:docstring of zoidberg.field.MagneticField.attributes:1: WARNING: duplicate object description of zoidberg.field.MagneticField.attributes, other instance in _apidoc/zoidberg, use :no-index: for one of them
/usr/lib/python3.13/site-packages/zoidberg/field.py:docstring of zoidberg.field.MagneticField.boundary:1: WARNING: duplicate object description of zoidberg.field.MagneticField.boundary, other instance in _apidoc/zoidberg, use :no-index: for one of them
/usr/lib/python3.13/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse:3: ERROR: Unexpected indentation.
/usr/lib/python3.13/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse.coil:3: ERROR: Unexpected indentation.
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/api_reference.rst:4: WARNING: toctree glob pattern '_breathe_autogen/*' didn't match any documents
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/file_io.rst:114: ERROR: Unknown interpreted text role "py".
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/performance_profiling.rst:85: WARNING: Inline literal start-string without end-string.
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/boundary_options.rst:120: WARNING: Footnote [#] is not referenced.
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/installing.rst:400: WARNING: Title underline too short.

Working with an active ``conda`` environment
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/installing.rst:400: WARNING: Title underline too short.

Working with an active ``conda`` environment
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/installing.rst:406: ERROR: Unexpected indentation.
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/installing.rst:407: WARNING: Block quote ends without a blank line; unexpected unindent.
/usr/lib/python3.13/site-packages/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :no-index: for one of them
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none found
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checking consistency... done
preparing documents... WARNING: unsupported theme option 'repository_url' given
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WARNING: unsupported theme option 'use_repository_button' given
done
copying assets... copying static files... WARNING: unsupported theme option 'use_issues_button' given
WARNING: unsupported theme option 'home_page_in_toc' given
done
copying extra files... done
done
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/usr/lib/python3.13/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator.normal'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 5]
    numpy.random.Generator.normal
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
      numpy.random.Generator.normal
      -----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator.normal
        -----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator.normal
        -----^

/usr/lib/python3.13/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 5]
    numpy.random.Generator
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
      numpy.random.Generator
      -----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator
        -----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator
        -----^

/usr/lib/python3.13/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: undefined label: 'random-quick-start'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:81: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:87: WARNING: unknown document: '../_breathe_autogen/file/field2d_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:93: WARNING: unknown document: '../_breathe_autogen/file/field3d_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:100: WARNING: unknown document: '../_breathe_autogen/file/field__data_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:105: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:112: WARNING: unknown document: '../_breathe_autogen/file/initialprofiles_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/vecops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:124: WARNING: unknown document: '../_breathe_autogen/file/vector2d_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:129: WARNING: unknown document: '../_breathe_autogen/file/vector3d_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:133: WARNING: unknown document: '../_breathe_autogen/file/where_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft__fftw_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:146: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:154: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:156: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:160: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:162: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:166: WARNING: unknown document: '../_breathe_autogen/file/spt_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:168: WARNING: unknown document: '../_breathe_autogen/file/spt_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:173: WARNING: unknown document: '../_breathe_autogen/file/invert__parderiv_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:181: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8cxx'
generating indices... /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:183: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:185: WARNING: unknown document: '../_breathe_autogen/file/lapack__routines_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:191: WARNING: unknown document: '../_breathe_autogen/file/boundary__factory_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:195: WARNING: unknown document: '../_breathe_autogen/file/boundary__region_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:200: WARNING: unknown document: '../_breathe_autogen/file/boundary__standard_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:209: WARNING: unknown document: '../_breathe_autogen/file/interpolation_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:212: WARNING: unknown document: '../_breathe_autogen/file/mesh_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:220: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:224: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:228: WARNING: unknown document: '../_breathe_autogen/file/gyro__average_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:231: WARNING: unknown document: '../_breathe_autogen/file/smoothing_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:234: WARNING: unknown document: '../_breathe_autogen/file/sourcex_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:240: WARNING: unknown document: '../_breathe_autogen/file/solver_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:247: WARNING: unknown document: '../_breathe_autogen/file/cvode_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:251: WARNING: unknown document: '../_breathe_autogen/file/cvode_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:255: WARNING: unknown document: '../_breathe_autogen/file/ida_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:259: WARNING: unknown document: '../_breathe_autogen/file/ida_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:263: WARNING: unknown document: '../_breathe_autogen/file/petsc_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:266: WARNING: unknown document: '../_breathe_autogen/file/petsc_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:270: WARNING: unknown document: '../_breathe_autogen/file/pvode_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:274: WARNING: unknown document: '../_breathe_autogen/file/pvode_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:278: WARNING: unknown document: '../_breathe_autogen/file/boutcomm_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:280: WARNING: unknown document: '../_breathe_autogen/file/boutexception_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:289: WARNING: unknown document: '../_breathe_autogen/file/msg__stack_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:296: WARNING: unknown document: '../_breathe_autogen/file/options_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:300: WARNING: unknown document: '../_breathe_autogen/file/optionsreader_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:302: WARNING: unknown document: '../_breathe_autogen/file/output_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:304: WARNING: unknown document: '../_breathe_autogen/file/range_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:308: WARNING: unknown document: '../_breathe_autogen/file/timer_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:312: WARNING: unknown document: '../_breathe_autogen/file/utils_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:318: WARNING: unknown document: '../_breathe_autogen/file/optionparser_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:320: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:322: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/mesh.rst:31: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field2d_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field3d_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: '&'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    &
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: '|'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    |
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: 'false'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
    false
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: 'true'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
    true
    ----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:153: WARNING: Unparseable C++ cross-reference: '>'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    >
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      >
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      >
      ^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:153: WARNING: Unparseable C++ cross-reference: '<'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    <
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      <
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      <
      ^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:163: WARNING: Unparseable C++ cross-reference: 'true'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
    true
    ----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:163: WARNING: Unparseable C++ cross-reference: 'false'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
    false
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: 'true'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
    true
    ----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: 'false'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
    false
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: '&'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    &
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: '|'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    |
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/differential_operators.rst:530: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/differential_operators.rst:538: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/laplacian.rst:185: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/output_and_post.rst:580: WARNING: Lexing literal_block 'AppendTo[$Path,"/full/path/to/BOUT/tools/mathematicalib"]' as "mathematica" resulted in an error at token: '$'. Retrying in relaxed mode.
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/physics_models.rst:31: WARNING: undefined label: 'sec-cmake'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/time_integration.rst:1030: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
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build succeeded, 130 warnings.

The HTML pages are in docs.
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual && /usr/bin/cmake -E echo Generated\ HTML\ docs\ in\ file:///builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual/docs/index.html
Generated HTML docs in file:///builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual/docs/index.html
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target sphinx-html
/usr/bin/gmake  -f manual/CMakeFiles/docs.dir/build.make manual/CMakeFiles/docs.dir/depend
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cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/manual/CMakeFiles/docs.dir/DependInfo.cmake "--color="
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gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
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gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target docs
gmake[1]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles 0

+ export LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
+ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
+ export PYTHONPATH=
+ PYTHONPATH=
+ '[' openmpi = mpich ']'
+ '[' openmpi = openmpi ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/openmpi/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/openmpi-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/openmpi-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64
+ eval 'unset MPI_COMPILER;
unset LD_LIBRARY_PATH;
unset MPI_MAN;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset _LMFILES_;
unset LOADEDMODULES;
unset CMAKE_PREFIX_PATH;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_HOME;
unset MPI_FORTRAN_MOD_DIR;
unset __MODULES_LMALTNAME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SUFFIX;
unset MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_LIB;
PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset MPI_COMPILER
++ unset LD_LIBRARY_PATH
++ unset MPI_MAN
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset _LMFILES_
++ unset LOADEDMODULES
++ unset CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_HOME
++ unset MPI_FORTRAN_MOD_DIR
++ unset __MODULES_LMALTNAME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SUFFIX
++ unset MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_LIB
++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ for mpi in openmpi mpich
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ LOADEDMODULES=
++++ export LOADEDMODULES
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/mpich-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/mpich-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64
+ eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH;
MPI_COMPILER=mpich-x86_64; export MPI_COMPILER;
MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE;
MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN;
MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH;
_LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_;
LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES;
PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/mpich; export MPI_PYTHON3_SITEARCH;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR;
MPI_HOME=/usr/lib64/mpich; export MPI_HOME;
__MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG;
MPI_SUFFIX=_mpich; export MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH;
MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB;
PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN;
test 0;'
++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib
++ export LD_LIBRARY_PATH
++ MPI_COMPILER=mpich-x86_64
++ export MPI_COMPILER
++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/mpich-x86_64
++ export MPI_INCLUDE
++ MPI_MAN=/usr/share/man/mpich-x86_64
++ export MPI_MAN
++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON_SITEARCH
++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64
++ export _LMFILES_
++ LOADEDMODULES=mpi/mpich-x86_64
++ export LOADEDMODULES
++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/mpich
++ export MPI_PYTHON3_SITEARCH
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich
++ export MPI_FORTRAN_MOD_DIR
++ MPI_HOME=/usr/lib64/mpich
++ export MPI_HOME
++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SYSCONFIG=/etc/mpich-x86_64
++ export MPI_SYSCONFIG
++ MPI_SUFFIX=_mpich
++ export MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON2_SITEARCH
++ MPI_LIB=/usr/lib64/mpich/lib
++ export MPI_LIB
++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/mpich/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=mpicc
+ export CC
+ CXX=mpicxx
+ export CXX
+ /usr/bin/cmake -S . -B build_mpich -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBOUT_USE_FFTW=ON -DBOUT_USE_NETCDF=ON -DBOUT_USE_SCOREP=OFF -DBOUT_USE_SYSTEM_MPARK_VARIANT=ON -DBOUT_USE_LAPACK=ON -DBOUT_USE_NLS=ON -DBOUT_USE_SYSTEM_FMT=ON -DBOUT_USE_UUID_SYSTEM_GENERATOR=ON -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_INCLUDEDIR=/usr/include/mpich-x86_64/bout++/ -DCMAKE_INSTALL_DATAROOTDIR=/usr/share -DCMAKE_INSTALL_PYTHON_SITEARCH=/usr/lib64/python3.13/site-packages/mpich -DBOUT_TEST_TIMEOUT=900 -DBOUT_BUILD_DOCS=ON -DBOUT_USE_PETSC=ON -DBOUT_USE_SUNDIALS=ON
-- Configuring BOUT++ version 5.2.0
-- The CXX compiler identification is GNU 14.2.1
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/lib64/mpich/bin/mpicxx - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Python3: /usr/bin/python3.13 (found version "3.13.0") found components: Interpreter
-- Could NOT find ClangFormat (missing: ClangFormat_BIN) 
CMake Warning (dev) at CMakeLists.txt:396 (message):
  'src/field/generated_fieldops.cxx' will not be regenerated when you make
  changes to either 'src/field/gen_fieldops.py' or
  'src/field/gen_fieldops.jinja'.  This is because either Python3 or
  clang-format is missing (see above messages for more information) or
  BOUT_GENERATE_FIELDOPS is OFF (current value: OFF).  This warning is only
  important for BOUT++ developers and can otherwise be safely ignored.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found Python3: /usr/bin/python3.13 (found suitable version "3.13.0", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed
-- Found Numpy: /usr/include (found version "1.26.4")
-- Found Cython: TRUE (found version "3.0.11")
-- Found Bash: /usr/bin/bash (found version "5.2.37")
-- Building BOUT++ Python interface
-- Found MPI_CXX: /usr/lib64/mpich/bin/mpicxx (found version "4.1")
-- Found MPI: TRUE (found version "4.1")
-- Enable OpenMP: OFF
-- HYPRE support: OFF
-- Found PkgConfig: /usr/bin/pkg-config (found version "2.3.0")
-- Checking for one of the modules 'PETSc>3.4.0;petsc>3.4.0'
-- Found PETSc: /usr/include/mpich-x86_64/petsc
-- PETSc support: ON
-- Using external mpark.variant
-- Using external fmt
CMake Deprecation Warning at externalpackages/PVODE/CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.10 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
  to tell CMake that the project requires at least <min> but has been updated
  to work with policies introduced by <max> or earlier.


-- PVODE support: ON
-- Found netCDF: /usr/lib64/libnetcdf.so (found version "4.9.2")
-- Found netCDFCxx version 4.3.1
-- Found netCDFCxx: /usr/lib64/libnetcdf_c++4.so (found version "4.3.1")
-- NetCDF support: ON
CMake Warning at cmake/SetupBOUTThirdParty.cmake:217 (find_package):
  By not providing "FindADIOS2.cmake" in CMAKE_MODULE_PATH this project has
  asked CMake to find a package configuration file provided by "ADIOS2", but
  CMake did not find one.

  Could not find a package configuration file provided by "ADIOS2" with any
  of the following names:

    ADIOS2Config.cmake
    adios2-config.cmake

  Add the installation prefix of "ADIOS2" to CMAKE_PREFIX_PATH or set
  "ADIOS2_DIR" to a directory containing one of the above files.  If "ADIOS2"
  provides a separate development package or SDK, be sure it has been
  installed.
Call Stack (most recent call first):
  CMakeLists.txt:479 (include)


-- ADIOS2 support: OFF
-- Found FFTW: /usr/lib64/libfftw3.so
-- FFTW support: ON
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/lib64/libflexiblas.so
-- Looking for cheev_
-- Looking for cheev_ - found
-- Found LAPACK: /usr/lib64/libflexiblas.so;-lm;-ldl
-- LAPACK support: TRUE
-- SLEPc support: OFF
-- The C compiler identification is GNU 14.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/lib64/mpich/bin/mpicc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- SUNDIALS support: ON
-- Found Gettext: /usr/bin/msgmerge (found version "0.22.5")
-- Found Intl: built in to C library
-- libuuid not found, using fallback UUID generator
-- UUID_SYSTEM_GENERATOR: FALSE
-- Enable coverage: OFF
-- Git revision: Unknown
-- Performing Test HAS_FLAG__Wnull_dereference
-- Performing Test HAS_FLAG__Wnull_dereference - Success
-- Warning flag is supported by compiler: -Wnull-dereference
-- Found negative flag: -Wno-cast-function-type
   replaced with -Wcast-function-type
-- Performing Test HAS_FLAG__Wno_cast_function_type
-- Performing Test HAS_FLAG__Wno_cast_function_type - Success
-- Warning flag is supported by compiler: -Wno-cast-function-type
-- Runtime checking level: CHECK=2
-- Message stack: BOUT_USE_MSGSTACK=ON
-- Extra debug output: BOUT_USE_OUTPUT_DEBUG=OFF
-- Signal handling: BOUT_USE_SIGNAL=ON
-- Output coloring: BOUT_USE_COLOR=ON
-- Field name tracking: BOUT_USE_TRACK=ON
-- Signalling floating point exceptions: BOUT_USE_SIGFPE=OFF
-- Enable backtrace: BOUT_USE_BACKTRACE=ON
-- Performing Test HAS_PRETTY_FUNCTION
-- Performing Test HAS_PRETTY_FUNCTION - Success
-- Setting build type to 'RelWithDebInfo' as none was specified.
-- Found Python3: /usr/bin/python3.13 (found version "3.13.0") found components: Interpreter
-- Not building test test-laplace-hypre3d, requirement not met: BOUT_HAS_HYPRE
-- Not building test test-laplacexy2-hypre, requirement not met: BOUT_HAS_HYPRE
-- Not building test test-options-adios, requirement not met: BOUT_HAS_ADIOS2
-- Not building test test-slepc-solver, requirement not met: BOUT_HAS_SLEPC
-- Not building test MMS-advection-arakawa, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-central, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-upwind, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-weno3, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-diffusion2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-hw, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-laplace, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-advection, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-d2dx2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-d2dz2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-diffusion, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-time, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-time-petsc, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building example test_laplacexy_hypre, requirement not met: BOUT_HAS_HYPRE
-- Found Doxygen: /usr/bin/doxygen (found version "1.12.0") found components: doxygen dot
-- Found Sphinx: /usr/bin/sphinx-build

   --------------------------------
     BOUT++ Configuration Summary
   --------------------------------

   Bundled PVODE support    : ON
   PETSc support            : ON
   SLEPc support            : OFF
   SUNDIALS support         : ON
   HYPRE support            : OFF
   NetCDF support           : ON
   ADIOS2 support           : OFF
   FFTW support             : ON
   LAPACK support           : TRUE
   OpenMP support           : OFF
   Natural language support : ON
   ScoreP support           : OFF
   System UUID generator    : FALSE
   Extra debug output       : OFF
   Runtime error check level: 2
   Signal handling          : ON
   Output coloring          : ON
   Field name tracking      : ON
   Floating point exceptions: OFF
   Backtrace enabled        : ON
   RAJA enabled             : OFF
   Umpire enabled           : OFF
   Caliper enabled          : OFF
   CUDA enabled             : OFF
   Metric type              : 2D
   Python API support       : ON
   Sanitizers enabled       : None

   === Python ===

   Make sure that the tools/pylib directory is in your PYTHONPATH
   e.g. by adding to your ~/.bashrc file

       export PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib:/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib:$PYTHONPATH

*** Now run `cmake --build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich` to compile BOUT++ ***

-- Configuring done (4.8s)
-- Generating done (0.3s)
CMake Warning:
  Manually-specified variables were not used by the project:

    BOUT_TEST_TIMEOUT
    CMAKE_CXX_FLAGS_RELEASE
    CMAKE_C_FLAGS_RELEASE
    CMAKE_Fortran_FLAGS_RELEASE
    CMAKE_INSTALL_DO_STRIP
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    LIB_SUFFIX
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR


-- Build files have been written to: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich
+ /usr/bin/cmake --build build_mpich -j4 --verbose
Change Dir: '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'

Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4
/usr/bin/cmake -S/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f -B/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/CMakeFiles /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich//CMakeFiles/progress.marks
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cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color="
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gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[  0%] Generating locale/es/libbout.gmo, _mo_file_es
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/locale/es/
[  0%] Generating locale/de/libbout.gmo, _mo_file_de
[  0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o
[  0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/locale/de/
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o -MF CMakeFiles/pvode.dir/source/cvode.cpp.o.d -o CMakeFiles/pvode.dir/source/cvode.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -MF CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o.d -o CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/precon/pvbbdpre.cpp
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/locale/es/libbout.gmo /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/locale/es/libbout.po
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/locale/de/libbout.gmo /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/locale/de/libbout.po
[  0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o -MF CMakeFiles/pvode.dir/source/nvector.cpp.o.d -o CMakeFiles/pvode.dir/source/nvector.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp
[  2%] Generating locale/fr/libbout.gmo, _mo_file_fr
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/locale/fr/
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/locale/fr/libbout.gmo /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/locale/fr/libbout.po
[  2%] Generating locale/zh_CN/libbout.gmo, _mo_file_zh_CN
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/locale/zh_CN/
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/locale/zh_CN/libbout.gmo /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/locale/zh_CN/libbout.po
[  2%] Generating locale/zh_TW/libbout.gmo, _mo_file_zh_TW
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/locale/zh_TW/
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/locale/zh_TW/libbout.gmo /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/locale/zh_TW/libbout.po
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:429: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  429 |   #pragma omp parallel for reduction(+: sum)
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:485: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  485 |   #pragma omp parallel for reduction(+: sum)
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:543: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  543 |   #pragma omp parallel for reduction(+: sum)
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:565: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  565 |   #pragma omp parallel for reduction(+: sum)
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:583: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  583 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:698: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  698 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:714: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  714 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:730: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  730 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:745: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  745 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:761: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  761 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:777: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  777 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:793: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  793 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:809: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  809 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:824: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  824 |     #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:831: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  831 |     #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:837: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  837 |   #pragma omp parallel for
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:850: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  850 |   #pragma omp parallel for
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[  2%] Built target mofiles
[  5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o -MF CMakeFiles/pvode.dir/source/llnlmath.cpp.o.d -o CMakeFiles/pvode.dir/source/llnlmath.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/llnlmath.cpp
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp: In function ‘void pvode::N_VLinearSum(real, N_Vector, real, N_Vector, N_Vector)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:189:12: warning: unused variable ‘v’ [-Wunused-variable]
  189 |   N_Vector v, v1, v2;
      |            ^
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp: In function ‘pvode::real pvode::N_VWL2Norm(N_Vector, N_Vector)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/nvector.cpp:533:14: warning: variable ‘N_global’ set but not used [-Wunused-but-set-variable]
  533 |   integer N, N_global;
      |              ^~~~~~~~
[  5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o -MF CMakeFiles/pvpre.dir/precon/band.cpp.o.d -o CMakeFiles/pvpre.dir/precon/band.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/precon/band.cpp
[  5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -MF CMakeFiles/pvode.dir/source/cvspgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvspgmr.cpp
[  5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o -MF CMakeFiles/pvode.dir/source/spgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/spgmr.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp
In function ‘pvode::CVnlsFunctional(pvode::CVodeMemRec*)’,
    inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1826:45,
    inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1358:18,
    inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:882:19:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1876:49: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized]
 1876 |     if ((m==maxcor) || ((m >= 2) && (del > RDIV * delp)))
      |                                                 ^
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1843:13: note: ‘delp’ was declared here
 1843 |   real del, delp, dcon;
      |             ^~~~
In function ‘pvode::CVNewtonIteration(pvode::CVodeMemRec*)’,
    inlined from ‘pvode::CVnlsNewton(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1944:28,
    inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1827:41,
    inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1358:18,
    inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:882:19:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:2021:50: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized]
 2021 |     if ((m == maxcor) || ((m >= 2) && (del > RDIV*delp))) {
      |                                                  ^
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvode.cpp:1971:13: note: ‘delp’ was declared here
 1971 |   real del, delp, dcon;
      |             ^~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp: In function ‘int pvode::SpgmrSolve(SpgmrMem, void*, N_Vector, N_Vector, int, int, real, int, void*, N_Vector, N_Vector, ATimesFn, PSolveFn, real*, int*, int*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp:159:8: warning: unused variable ‘s_r0_norm’ [-Wunused-variable]
  159 |   real s_r0_norm, beta, rotation_product, r_norm, s_product, rho;
      |        ^~~~~~~~~
[  8%] Linking CXX shared library ../../lib/libpvpre.so
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvpre.dir/link.txt --verbose=1
[  8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o -MF CMakeFiles/pvode.dir/source/iterativ.cpp.o.d -o CMakeFiles/pvode.dir/source/iterativ.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/iterativ.cpp
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp:328:17: warning: ‘krydim’ may be used uninitialized [-Wmaybe-uninitialized]
  328 |     for (i=1; i <= krydim; i++) yg[i]=ZERO;
      |               ~~^~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp:161:36: note: ‘krydim’ was declared here
  161 |   int i, j, k, l, l_plus_1, l_max, krydim, ier, ntries;
      |                                    ^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp:386:3: warning: ‘rho’ may be used uninitialized [-Wmaybe-uninitialized]
  386 |   if (rho < beta) {
      |   ^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/spgmr.cpp:159:62: note: ‘rho’ was declared here
  159 |   real s_r0_norm, beta, rotation_product, r_norm, s_product, rho;
      |                                                              ^~~
[ 11%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o -MF CMakeFiles/pvode.dir/source/cvdiag.cpp.o.d -o CMakeFiles/pvode.dir/source/cvdiag.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/cvdiag.cpp
[ 11%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o -MF CMakeFiles/pvode.dir/source/smalldense.cpp.o.d -o CMakeFiles/pvode.dir/source/smalldense.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/smalldense.cpp
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/smalldense.cpp: In function ‘pvode::integer pvode::gefa(real**, integer, integer*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/source/smalldense.cpp:82:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   82 |     if (swap = (l != k)) {
      |         ~~~~~^~~~~~~~~~
/usr/lib64/mpich/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file=CMakeFiles/pvpre.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvpre.so.1.0.0 -o ../../lib/libpvpre.so.1.0.0 CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o CMakeFiles/pvpre.dir/precon/band.cpp.o  -Wl,-rpath,:::::::::::::::::::::::::
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 11%] Built target pvpre
[ 11%] Linking CXX shared library ../../lib/libpvode.so
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvode.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file=CMakeFiles/pvode.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvode.so.1.0.0 -o ../../lib/libpvode.so.1.0.0 CMakeFiles/pvode.dir/source/cvode.cpp.o CMakeFiles/pvode.dir/source/nvector.cpp.o CMakeFiles/pvode.dir/source/llnlmath.cpp.o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o CMakeFiles/pvode.dir/source/spgmr.cpp.o CMakeFiles/pvode.dir/source/iterativ.cpp.o CMakeFiles/pvode.dir/source/cvdiag.cpp.o CMakeFiles/pvode.dir/source/smalldense.cpp.o  -Wl,-rpath,:::::::::::::::::::::::::
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 11%] Built target pvode
/usr/bin/gmake  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 14%] Generating bout++-time.cxx
/usr/bin/cmake -P /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/cmake/GenerateDateTimeFile.cmake
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/CMakeFiles/bout++.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
/usr/bin/gmake  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build
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[ 14%] Building CXX object CMakeFiles/bout++.dir/src/bout++.cxx.o
[ 14%] Building CXX object CMakeFiles/bout++.dir/src/field/field2d.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/bout++.cxx.o -MF CMakeFiles/bout++.dir/src/bout++.cxx.o.d -o CMakeFiles/bout++.dir/src/bout++.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field2d.cxx.o -MF CMakeFiles/bout++.dir/src/field/field2d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field2d.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/field2d.cxx
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field.cxx.o -MF CMakeFiles/bout++.dir/src/field/field.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/field.cxx
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field3d.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field3d.cxx.o -MF CMakeFiles/bout++.dir/src/field/field3d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field3d.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/field3d.cxx
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field_data.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field_data.cxx.o -MF CMakeFiles/bout++.dir/src/field/field_data.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field_data.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/field_data.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field_factory.cxx.o -MF CMakeFiles/bout++.dir/src/field/field_factory.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field_factory.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/field_factory.cxx
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o -MF CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o.d -o CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/fieldgenerators.cxx
[ 20%] Building CXX object CMakeFiles/bout++.dir/src/field/fieldgroup.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/fieldgroup.cxx.o -MF CMakeFiles/bout++.dir/src/field/fieldgroup.cxx.o.d -o CMakeFiles/bout++.dir/src/field/fieldgroup.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/fieldgroup.cxx
[ 20%] Building CXX object CMakeFiles/bout++.dir/src/field/fieldperp.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/fieldperp.cxx.o -MF CMakeFiles/bout++.dir/src/field/fieldperp.cxx.o.d -o CMakeFiles/bout++.dir/src/field/fieldperp.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/fieldperp.cxx
[ 20%] Building CXX object CMakeFiles/bout++.dir/src/field/generated_fieldops.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/generated_fieldops.cxx.o -MF CMakeFiles/bout++.dir/src/field/generated_fieldops.cxx.o.d -o CMakeFiles/bout++.dir/src/field/generated_fieldops.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/generated_fieldops.cxx
[ 20%] Building CXX object CMakeFiles/bout++.dir/src/field/globalfield.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/globalfield.cxx.o -MF CMakeFiles/bout++.dir/src/field/globalfield.cxx.o.d -o CMakeFiles/bout++.dir/src/field/globalfield.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/globalfield.cxx
[ 20%] Building CXX object CMakeFiles/bout++.dir/src/field/initialprofiles.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/initialprofiles.cxx.o -MF CMakeFiles/bout++.dir/src/field/initialprofiles.cxx.o.d -o CMakeFiles/bout++.dir/src/field/initialprofiles.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/initialprofiles.cxx
[ 22%] Building CXX object CMakeFiles/bout++.dir/src/field/vecops.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/vecops.cxx.o -MF CMakeFiles/bout++.dir/src/field/vecops.cxx.o.d -o CMakeFiles/bout++.dir/src/field/vecops.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/vecops.cxx
[ 22%] Building CXX object CMakeFiles/bout++.dir/src/field/vector2d.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/vector2d.cxx.o -MF CMakeFiles/bout++.dir/src/field/vector2d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/vector2d.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/field/vector2d.cxx
[ 22%] Building CXX object CMakeFiles/bout++.dir/src/field/vector3d.cxx.o
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[ 28%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/multigrid/multigrid_solver.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/multigrid/multigrid_solver.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/multigrid/multigrid_solver.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/multigrid/multigrid_solver.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplace/impls/multigrid/multigrid_solver.cxx
[ 28%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/naulin/naulin_laplace.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/naulin/naulin_laplace.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/naulin/naulin_laplace.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/naulin/naulin_laplace.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplace/impls/naulin/naulin_laplace.cxx
[ 31%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr/pcr.cxx.o
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[ 31%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr_thomas/pcr_thomas.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr_thomas/pcr_thomas.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr_thomas/pcr_thomas.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr_thomas/pcr_thomas.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplace/impls/pcr_thomas/pcr_thomas.cxx
[ 31%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/petsc/petsc_laplace.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/petsc/petsc_laplace.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/petsc/petsc_laplace.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/petsc/petsc_laplace.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplace/impls/petsc/petsc_laplace.cxx
[ 31%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/petsc3damg/petsc3damg.cxx.o
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[ 31%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/serial_band/serial_band.cxx.o
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[ 34%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/serial_tri/serial_tri.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/serial_tri/serial_tri.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/serial_tri/serial_tri.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/serial_tri/serial_tri.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplace/impls/serial_tri/serial_tri.cxx
[ 34%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/spt/spt.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/spt/spt.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/spt/spt.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/spt/spt.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplace/impls/spt/spt.cxx
[ 34%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx
[ 34%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/invert_laplace.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/invert_laplace.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/invert_laplace.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/invert_laplace.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplace/invert_laplace.cxx
[ 37%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexy/laplacexy.cxx
[ 37%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexy2/laplacexy2.cxx
[ 37%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexy2/laplacexy2_hypre.cxx
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexy2/laplacexy2_hypre.cxx:1:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invert/laplacexy2_hypre.hxx:41:2: warning: #warning LaplaceXY requires Hypre. No LaplaceXY available [-Wcpp]
   41 | #warning LaplaceXY requires Hypre. No LaplaceXY available
      |  ^~~~~~~
[ 37%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplacexz/laplacexz.cxx
[ 40%] Building CXX object CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o -MF CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/parderiv/impls/cyclic/cyclic.cxx
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[ 42%] Building CXX object CMakeFiles/bout++.dir/src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx.o
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o -MF CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/pardiv/invert_pardiv.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_factory.cxx
[ 42%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_region.cxx
[ 42%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx
[ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/coordinates.cxx
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx: In function ‘void verifyNumPoints(BoundaryRegion*, int)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:80:21: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
   80 |     if (mesh->firstY()) {
      |         ~~~~~~~~~~~~^~
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field_factory.hxx:32,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/boundary_standard.hxx:9,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:1:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:447:66: note: declared here
  447 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:83:20: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
   83 |     if (mesh->lastY()) {
      |         ~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:451:65: note: declared here
  451 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:473:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  473 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  474 |                                t);
      |                                ~~
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field_data.hxx:50,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field.hxx:39,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field2d.hxx:34,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/boundary_op.hxx:9,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/boundary_standard.hxx:6:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:517:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  517 |               val = fg->generate(xnorm, TWOPI * ynorm,
      |                     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
  518 |                                  TWOPI * (zk - 0.5) / (mesh->LocalNz), t);
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O3::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:978:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  978 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  979 |                                t);
      |                                ~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O4::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:1444:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
 1444 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1445 |                                t);
      |                                ~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryNeumann::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/boundary_standard.cxx:2152:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
 2152 |               val = fg->generate(xnorm, TWOPI * ynorm,
      |                     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
 2153 |                                  TWOPI * (zk - 0.5) / (mesh->LocalNz), t);
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
[ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/coordinates_accessor.cxx
[ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/data/gridfromfile.cxx
[ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/data/gridfromoptions.cxx
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/difops.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/difops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/difops.cxx
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/fv_ops.cxx
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/fv_ops.cxx: In function ‘FV::communicateFluxes(Field3D&)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/fv_ops.cxx:471:15: warning: ‘xout’ may be used uninitialized [-Wmaybe-uninitialized]
  471 |     mesh->wait(xout);
      |     ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/fv_ops.cxx:442:20: note: ‘xout’ was declared here
  442 |   comm_handle xin, xout;
      |                    ^~~~
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/index_derivs.cxx
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation_xz.cxx
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/bilinear_xz.cxx
In file included from /usr/include/c++/14/bits/shared_ptr.h:53,
                 from /usr/include/c++/14/memory:80,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field.hxx:36,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field2d.hxx:34,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/options.hxx:43,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/deriv_store.hxx:42,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:48,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.hxx:8,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:36:
In member function ‘std::__shared_ptr<ArrayData<double>, (__gnu_cxx::_Lock_policy)2>::operator bool() const’,
    inlined from ‘std::operator==<ArrayData<double> >(std::shared_ptr<ArrayData<double> > const&, decltype(nullptr))bool’ at /usr/include/c++/14/bits/shared_ptr.h:561:14,
    inlined from ‘Array<double, ArrayData<double> >::empty() const’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/array.hxx:270:44,
    inlined from ‘Field3D::isAllocated() const’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field3d.hxx:204:48,
    inlined from ‘BoutMesh::pack_data(std::vector<FieldData*, std::allocator<FieldData*> > const&, int, int, int, int, double*)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:2300:7:
/usr/include/c++/14/bits/shared_ptr_base.h:1671:16: warning: potential null pointer dereference [-Wnull-dereference]
 1671 |       { return _M_ptr != nullptr; }
      |                ^~~~~~
In member function ‘std::__shared_ptr<ArrayData<double>, (__gnu_cxx::_Lock_policy)2>::operator bool() const’,
    inlined from ‘std::operator==<ArrayData<double> >(std::shared_ptr<ArrayData<double> > const&, decltype(nullptr))bool’ at /usr/include/c++/14/bits/shared_ptr.h:561:14,
    inlined from ‘Array<double, ArrayData<double> >::empty() const’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/array.hxx:270:44,
    inlined from ‘Field2D::isAllocated() const’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/field2d.hxx:106:48,
    inlined from ‘BoutMesh::pack_data(std::vector<FieldData*, std::allocator<FieldData*> > const&, int, int, int, int, double*)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:2311:7:
/usr/include/c++/14/bits/shared_ptr_base.h:1671:16: warning: potential null pointer dereference [-Wnull-dereference]
 1671 |       { return _M_ptr != nullptr; }
      |                ^~~~~~
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/hermite_spline_xz.cxx
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/hermite_spline_z.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/interpolation_z.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/lagrange_4pt_xz.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/mesh.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/fci.cxx
[ 57%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/identity.cxx
[ 57%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/shiftedmetric.cxx
[ 57%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel/shiftedmetricinterp.cxx
[ 57%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel_boundary_op.cxx
[ 60%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/parallel_boundary_region.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o -MF CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/gyro_average.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o -MF CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o -MF CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/smoothing.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/snb.cxx.o -MF CMakeFiles/bout++.dir/src/physics/snb.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/snb.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/snb.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o -MF CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/sourcex.cxx
[ 62%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/adams_bashforth/adams_bashforth.cxx
[ 65%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx
[ 65%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In destructor ‘virtual ArkodeSolver::~ArkodeSolver()’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:154:14: warning: ‘void ARKStepFree(void**)’ is deprecated: use ARKodeFree instead [-Wdeprecated-declarations]
  154 |   ARKStepFree(&arkode_mem);
      |   ~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:43:
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:399:6: note: declared here
  399 | void ARKStepFree(void** arkode_mem);
      |      ^~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘virtual int ArkodeSolver::init()’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:240:25: warning: ‘int ARKStepSetUserData(void*, void*)’ is deprecated: use ARKodeSetUserData instead [-Wdeprecated-declarations]
  240 |   if (ARKStepSetUserData(arkode_mem, this) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:229:5: note: declared here
  229 | int ARKStepSetUserData(void* arkode_mem, void* user_data);
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:244:23: warning: ‘int ARKStepSetLinear(void*, int)’ is deprecated: use ARKodeSetLinear instead [-Wdeprecated-declarations]
  244 |   if (ARKStepSetLinear(arkode_mem, set_linear) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:148:5: note: declared here
  148 | int ARKStepSetLinear(void* arkode_mem, int timedepend);
      |     ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:251:28: warning: ‘int ARKStepSetFixedStep(void*, sunrealtype)’ is deprecated: use ARKodeSetFixedStep instead [-Wdeprecated-declarations]
  251 |     if (ARKStepSetFixedStep(arkode_mem, fixed_timestep) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:221:5: note: declared here
  221 | int ARKStepSetFixedStep(void* arkode_mem, sunrealtype hfixed);
      |     ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:256:22: warning: ‘int ARKStepSetOrder(void*, int)’ is deprecated: use ARKodeSetOrder instead [-Wdeprecated-declarations]
  256 |   if (ARKStepSetOrder(arkode_mem, order) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:136:5: note: declared here
  136 | int ARKStepSetOrder(void* arkode_mem, int maxord);
      |     ^~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:272:28: warning: ‘int ARKStepSetCFLFraction(void*, sunrealtype)’ is deprecated: use ARKodeSetCFLFraction instead [-Wdeprecated-declarations]
  272 |   if (ARKStepSetCFLFraction(arkode_mem, cfl_frac) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:158:5: note: declared here
  158 | int ARKStepSetCFLFraction(void* arkode_mem, sunrealtype cfl_frac);
      |     ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:300:32: warning: ‘int ARKStepSetAdaptController(void*, SUNAdaptController)’ is deprecated: use ARKodeSetAdaptController instead [-Wdeprecated-declarations]
  300 |   if (ARKStepSetAdaptController(arkode_mem, controller) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:154:5: note: declared here
  154 | int ARKStepSetAdaptController(void* arkode_mem, SUNAdaptController C);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:304:37: warning: ‘int ARKStepSetAdaptivityAdjustment(void*, int)’ is deprecated: use ARKodeSetAdaptivityAdjustment instead [-Wdeprecated-declarations]
  304 |   if (ARKStepSetAdaptivityAdjustment(arkode_mem, 0) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:156:5: note: declared here
  156 | int ARKStepSetAdaptivityAdjustment(void* arkode_mem, int adjust);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:368:28: warning: ‘int ARKStepSVtolerances(void*, sunrealtype, N_Vector)’ is deprecated: use ARKodeSVtolerances instead [-Wdeprecated-declarations]
  368 |     if (ARKStepSVtolerances(arkode_mem, reltol, abstolvec) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:115:5: note: declared here
  115 | int ARKStepSVtolerances(void* arkode_mem, sunrealtype reltol, N_Vector abstol);
      |     ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:374:28: warning: ‘int ARKStepSStolerances(void*, sunrealtype, sunrealtype)’ is deprecated: use ARKodeSStolerances instead [-Wdeprecated-declarations]
  374 |     if (ARKStepSStolerances(arkode_mem, reltol, abstol) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:113:5: note: declared here
  113 | int ARKStepSStolerances(void* arkode_mem, sunrealtype reltol, sunrealtype abstol);
      |     ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:379:28: warning: ‘int ARKStepSetMaxNumSteps(void*, long int)’ is deprecated: use ARKodeSetMaxNumSteps instead [-Wdeprecated-declarations]
  379 |   if (ARKStepSetMaxNumSteps(arkode_mem, mxsteps) != ARK_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:205:5: note: declared here
  205 | int ARKStepSetMaxNumSteps(void* arkode_mem, long int mxsteps);
      |     ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:384:26: warning: ‘int ARKStepSetMaxStep(void*, sunrealtype)’ is deprecated: use ARKodeSetMaxStep instead [-Wdeprecated-declarations]
  384 |     if (ARKStepSetMaxStep(arkode_mem, max_timestep) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:213:5: note: declared here
  213 | int ARKStepSetMaxStep(void* arkode_mem, sunrealtype hmax);
      |     ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:390:26: warning: ‘int ARKStepSetMinStep(void*, sunrealtype)’ is deprecated: use ARKodeSetMinStep instead [-Wdeprecated-declarations]
  390 |     if (ARKStepSetMinStep(arkode_mem, min_timestep) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:211:5: note: declared here
  211 | int ARKStepSetMinStep(void* arkode_mem, sunrealtype hmin);
      |     ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:396:27: warning: ‘int ARKStepSetInitStep(void*, sunrealtype)’ is deprecated: use ARKodeSetInitStep instead [-Wdeprecated-declarations]
  396 |     if (ARKStepSetInitStep(arkode_mem, start_timestep) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:209:5: note: declared here
  209 | int ARKStepSetInitStep(void* arkode_mem, sunrealtype hin);
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:408:36: warning: ‘int ARKStepSetNonlinearSolver(void*, SUNNonlinearSolver)’ is deprecated: use ARKodeSetNonlinearSolver instead [-Wdeprecated-declarations]
  408 |       if (ARKStepSetNonlinearSolver(arkode_mem, nonlinear_solver) != ARK_SUCCESS) {
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:144:5: note: declared here
  144 | int ARKStepSetNonlinearSolver(void* arkode_mem, SUNNonlinearSolver NLS);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:420:33: warning: ‘int ARKStepSetLinearSolver(void*, SUNLinearSolver, SUNMatrix)’ is deprecated: use ARKodeSetLinearSolver instead [-Wdeprecated-declarations]
  420 |       if (ARKStepSetLinearSolver(arkode_mem, sun_solver, nullptr) != ARKLS_SUCCESS) {
      |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:125:5: note: declared here
  125 | int ARKStepSetLinearSolver(void* arkode_mem, SUNLinearSolver LS, SUNMatrix A);
      |     ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:429:39: warning: ‘int ARKStepSetPreconditioner(void*, ARKLsPrecSetupFn, ARKLsPrecSolveFn)’ is deprecated: use ARKodeSetPreconditioner instead [-Wdeprecated-declarations]
  429 |           if (ARKStepSetPreconditioner(arkode_mem, nullptr, arkode_pre)
      |               ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:253:5: note: declared here
  253 | int ARKStepSetPreconditioner(void* arkode_mem, ARKLsPrecSetupFn psetup,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:483:29: warning: ‘int ARKStepSetJacTimes(void*, ARKLsJacTimesSetupFn, ARKLsJacTimesVecFn)’ is deprecated: use ARKodeSetJacTimes instead [-Wdeprecated-declarations]
  483 |       if (ARKStepSetJacTimes(arkode_mem, nullptr, arkode_jac) != ARKLS_SUCCESS) {
      |           ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:259:5: note: declared here
  259 | int ARKStepSetJacTimes(void* arkode_mem, ARKLsJacTimesSetupFn jtsetup,
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:493:32: warning: ‘int ARKStepSetOptimalParams(void*)’ is deprecated: adjust parameters individually instead [-Wdeprecated-declarations]
  493 |     if (ARKStepSetOptimalParams(arkode_mem) != ARK_SUCCESS) {
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:134:5: note: declared here
  134 | int ARKStepSetOptimalParams(void* arkode_mem);
      |     ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘virtual int ArkodeSolver::run()’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:526:23: warning: ‘int ARKStepGetNumSteps(void*, long int*)’ is deprecated: use ARKodeGetNumSteps instead [-Wdeprecated-declarations]
  526 |     ARKStepGetNumSteps(arkode_mem, &temp_long_int);
      |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:290:5: note: declared here
  290 | int ARKStepGetNumSteps(void* arkode_mem, long int* nsteps);
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:532:35: warning: ‘int ARKStepGetNumNonlinSolvIters(void*, long int*)’ is deprecated: use ARKodeGetNumNonlinSolvIters instead [-Wdeprecated-declarations]
  532 |       ARKStepGetNumNonlinSolvIters(arkode_mem, &temp_long_int);
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:337:5: note: declared here
  337 | int ARKStepGetNumNonlinSolvIters(void* arkode_mem, long int* nniters);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:534:29: warning: ‘int ARKStepGetNumPrecEvals(void*, long int*)’ is deprecated: use ARKodeGetNumPrecEvals instead [-Wdeprecated-declarations]
  534 |       ARKStepGetNumPrecEvals(arkode_mem, &temp_long_int);
      |       ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:357:5: note: declared here
  357 | int ARKStepGetNumPrecEvals(void* arkode_mem, long int* npevals);
      |     ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:536:28: warning: ‘int ARKStepGetNumLinIters(void*, long int*)’ is deprecated: use ARKodeGetNumLinIters instead [-Wdeprecated-declarations]
  536 |       ARKStepGetNumLinIters(arkode_mem, &temp_long_int);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:361:5: note: declared here
  361 | int ARKStepGetNumLinIters(void* arkode_mem, long int* nliters);
      |     ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘BoutReal ArkodeSolver::run(BoutReal)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:574:25: warning: ‘int ARKStepEvolve(void*, sunrealtype, N_Vector, sunrealtype*, int)’ is deprecated: use ARKodeEvolve instead [-Wdeprecated-declarations]
  574 |     flag = ARKStepEvolve(arkode_mem, tout, uvec, &simtime, ARK_NORMAL);
      |            ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:269:5: note: declared here
  269 | int ARKStepEvolve(void* arkode_mem, sunrealtype tout, N_Vector yout,
      |     ^~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:578:26: warning: ‘int ARKStepGetCurrentTime(void*, sunrealtype*)’ is deprecated: use ARKodeGetCurrentTime instead [-Wdeprecated-declarations]
  578 |     ARKStepGetCurrentTime(arkode_mem, &internal_time);
      |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:298:5: note: declared here
  298 | int ARKStepGetCurrentTime(void* arkode_mem, sunrealtype* tcur);
      |     ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:582:27: warning: ‘int ARKStepEvolve(void*, sunrealtype, N_Vector, sunrealtype*, int)’ is deprecated: use ARKodeEvolve instead [-Wdeprecated-declarations]
  582 |       flag = ARKStepEvolve(arkode_mem, tout, uvec, &internal_time, ARK_ONE_STEP);
      |              ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:269:5: note: declared here
  269 | int ARKStepEvolve(void* arkode_mem, sunrealtype tout, N_Vector yout,
      |     ^~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:594:25: warning: ‘int ARKStepGetDky(void*, sunrealtype, int, N_Vector)’ is deprecated: use ARKodeGetDky instead [-Wdeprecated-declarations]
  594 |     flag = ARKStepGetDky(arkode_mem, tout, 0, uvec);
      |            ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:272:5: note: declared here
  272 | int ARKStepGetDky(void* arkode_mem, sunrealtype t, int k, N_Vector dky);
      |     ^~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘void ArkodeSolver::rhs_e(BoutReal, BoutReal*, BoutReal*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:624:21: warning: ‘int ARKStepGetLastStep(void*, sunrealtype*)’ is deprecated: use ARKodeGetLastStep instead [-Wdeprecated-declarations]
  624 |   ARKStepGetLastStep(arkode_mem, &hcur);
      |   ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:294:5: note: declared here
  294 | int ARKStepGetLastStep(void* arkode_mem, sunrealtype* hlast);
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘void ArkodeSolver::rhs_i(BoutReal, BoutReal*, BoutReal*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:641:21: warning: ‘int ARKStepGetLastStep(void*, sunrealtype*)’ is deprecated: use ARKodeGetLastStep instead [-Wdeprecated-declarations]
  641 |   ARKStepGetLastStep(arkode_mem, &hcur);
      |   ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:294:5: note: declared here
  294 | int ARKStepGetLastStep(void* arkode_mem, sunrealtype* hlast);
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx: In member function ‘void ArkodeSolver::rhs(BoutReal, BoutReal*, BoutReal*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/arkode/arkode.cxx:654:21: warning: ‘int ARKStepGetLastStep(void*, sunrealtype*)’ is deprecated: use ARKodeGetLastStep instead [-Wdeprecated-declarations]
  654 |   ARKStepGetLastStep(arkode_mem, &hcur);
      |   ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/arkode/arkode_arkstep.h:294:5: note: declared here
  294 | int ARKStepGetLastStep(void* arkode_mem, sunrealtype* hlast);
      |     ^~~~~~~~~~~~~~~~~~
[ 65%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/petsc/petsc.cxx
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[ 68%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/pvode/pvode.cxx.o
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/rk3-ssp/rk3-ssp.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/rk3-ssp/rk3-ssp.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/rk3-ssp/rk3-ssp.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/rk3-ssp/rk3-ssp.cxx
[ 71%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/rk4/rk4.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/rk4/rk4.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/rk4/rk4.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/rk4/rk4.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/rk4/rk4.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx
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[ 77%] Building CXX object CMakeFiles/bout++.dir/src/sys/adios_object.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/adios_object.cxx.o -MF CMakeFiles/bout++.dir/src/sys/adios_object.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/adios_object.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/adios_object.cxx
[ 80%] Building CXX object CMakeFiles/bout++.dir/src/sys/bout_types.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/bout_types.cxx.o -MF CMakeFiles/bout++.dir/src/sys/bout_types.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/bout_types.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/bout_types.cxx
[ 80%] Building CXX object CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o -MF CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx
[ 80%] Building CXX object CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o -MF CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutexception.cxx
[ 80%] Building CXX object CMakeFiles/bout++.dir/src/sys/derivs.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/derivs.cxx.o -MF CMakeFiles/bout++.dir/src/sys/derivs.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/derivs.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/derivs.cxx
[ 80%] Building CXX object CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o -MF CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/expressionparser.cxx
[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o -MF CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/generator_context.cxx
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/expressionparser.cxx: In member function ‘virtual double FieldGenerator::generate(const bout::generator::Context&)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/expressionparser.cxx:43:18: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
   43 |   return generate(ctx.x(), ctx.y(), ctx.z(), ctx.t());
      |          ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/expressionparser.cxx:25:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sys/expressionparser.hxx:69:3: note: declared here
   69 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o -MF CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/hyprelib.cxx
[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o -MF CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/msg_stack.cxx
[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/options.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options.cxx
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_ini.cxx
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options/options_io.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options/options_io.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options/options_io.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options/options_io.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_adios.cxx
[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o -MF CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/optionsreader.cxx
In file included from /usr/include/mpich-x86_64/ncFile.h:2,
                 from /usr/include/mpich-x86_64/netcdf:16,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.hxx:22,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:7:
/usr/include/mpich-x86_64/ncGroup.h:18:14: warning: ‘netCDF::file_id’ defined but not used [-Wunused-variable]
   18 |   static int file_id;
      |              ^~~~~~~
In file included from /usr/include/mpich-x86_64/ncFile.h:2,
                 from /usr/include/mpich-x86_64/netcdf:16,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.hxx:22,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:5:
/usr/include/mpich-x86_64/ncGroup.h:18:14: warning: ‘netCDF::file_id’ defined but not used [-Wunused-variable]
   18 |   static int file_id;
      |              ^~~~~~~
[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/output.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/output.cxx.o -MF CMakeFiles/bout++.dir/src/sys/output.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/output.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/output.cxx
[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o
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[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/range.cxx.o
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[ 91%] Building CXX object CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o -MF CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/slepclib.cxx
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[ 91%] Building CXX object CMakeFiles/bout++.dir/src/sys/utils.cxx.o
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[ 94%] Linking CXX shared library lib/libbout++.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/bout++.dir/link.txt --verbose=1
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CMakeFiles/bout++.dir/src/field/field3d.cxx.o CMakeFiles/bout++.dir/src/field/field_data.cxx.o CMakeFiles/bout++.dir/src/field/field_factory.cxx.o CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o CMakeFiles/bout++.dir/src/field/fieldgroup.cxx.o CMakeFiles/bout++.dir/src/field/fieldperp.cxx.o CMakeFiles/bout++.dir/src/field/generated_fieldops.cxx.o CMakeFiles/bout++.dir/src/field/globalfield.cxx.o CMakeFiles/bout++.dir/src/field/initialprofiles.cxx.o CMakeFiles/bout++.dir/src/field/vecops.cxx.o CMakeFiles/bout++.dir/src/field/vector2d.cxx.o CMakeFiles/bout++.dir/src/field/vector3d.cxx.o CMakeFiles/bout++.dir/src/field/where.cxx.o CMakeFiles/bout++.dir/src/invert/fft_fftw.cxx.o CMakeFiles/bout++.dir/src/invert/lapack_routines.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/iterative_parallel_tri/iterative_parallel_tri.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/multigrid/multigrid_alg.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/multigrid/multigrid_laplace.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/multigrid/multigrid_solver.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/naulin/naulin_laplace.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr/pcr.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr_thomas/pcr_thomas.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/petsc/petsc_laplace.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/petsc3damg/petsc3damg.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/serial_band/serial_band.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/serial_tri/serial_tri.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/spt/spt.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx.o CMakeFiles/bout++.dir/src/invert/laplace/invert_laplace.cxx.o CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o "CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o" "CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o" CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o CMakeFiles/bout++.dir/src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx.o CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o CMakeFiles/bout++.dir/src/mesh/difops.cxx.o CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o CMakeFiles/bout++.dir/src/physics/snb.cxx.o CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o "CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o" CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o CMakeFiles/bout++.dir/src/solver/impls/power/power.cxx.o CMakeFiles/bout++.dir/src/solver/impls/pvode/pvode.cxx.o "CMakeFiles/bout++.dir/src/solver/impls/rk3-ssp/rk3-ssp.cxx.o" CMakeFiles/bout++.dir/src/solver/impls/rk4/rk4.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/rkgeneric.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/rkscheme.cxx.o CMakeFiles/bout++.dir/src/solver/impls/slepc/slepc.cxx.o CMakeFiles/bout++.dir/src/solver/impls/snes/snes.cxx.o "CMakeFiles/bout++.dir/src/solver/impls/split-rk/split-rk.cxx.o" CMakeFiles/bout++.dir/src/solver/solver.cxx.o CMakeFiles/bout++.dir/src/sys/adios_object.cxx.o CMakeFiles/bout++.dir/src/sys/bout_types.cxx.o CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o CMakeFiles/bout++.dir/src/sys/derivs.cxx.o CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o CMakeFiles/bout++.dir/src/sys/options.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_io.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o CMakeFiles/bout++.dir/src/sys/output.cxx.o CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o CMakeFiles/bout++.dir/src/sys/range.cxx.o CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o CMakeFiles/bout++.dir/src/sys/timer.cxx.o CMakeFiles/bout++.dir/src/sys/type_name.cxx.o CMakeFiles/bout++.dir/src/sys/utils.cxx.o "CMakeFiles/bout++.dir/bout++-time.cxx.o"  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib: /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/libfmt.so.11.0.2 lib/libpvode.so.1.0.0 lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl -ldl /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libnetcdf.so /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.In member function ‘__ct ’,
    inlined from ‘_Construct’ at /usr/include/c++/14/bits/stl_construct.h:119:7,
    inlined from ‘construct’ at /usr/include/c++/14/bits/alloc_traits.h:694:19,
    inlined from ‘__ct ’ at /usr/include/c++/14/bits/shared_ptr_base.h:607:39,
    inlined from ‘__ct ’ at /usr/include/c++/14/bits/shared_ptr_base.h:969:16,
    inlined from ‘__ct ’ at /usr/include/c++/14/bits/shared_ptr_base.h:1713:14,
    inlined from ‘__ct ’ at /usr/include/c++/14/bits/shared_ptr.h:463:59,
    inlined from ‘make_shared’ at /usr/include/c++/14/bits/shared_ptr.h:1008:39,
    inlined from ‘get’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/array.hxx:428:38,
    inlined from ‘reallocate’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/array.hxx:226:14,
    inlined from ‘__ct_base ’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/invert/laplace/impls/spt/spt.cxx:68:21:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/array.hxx:75:12: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   75 |     data = new T[len];
      |            ^
/usr/include/c++/14/new: In member function ‘__ct_base ’:
/usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here
  133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1
/usr/bin/cmake -E cmake_symlink_library lib/libbout++.so.5.1.0 lib/libbout++.so.5.1.0 lib/libbout++.so
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 94%] Built target bout++
/usr/bin/gmake  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 94%] Generating resolve_enum.pxd
[ 94%] Generating boutpp.pyx
[ 97%] Generating boutcpp.pxd
[ 94%] Generating helper.cxx
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.13 generate.py boutcpp.pxd.jinja /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/boutcpp.pxd
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.13 generate.py resolve_enum.pxd.jinja /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/resolve_enum.pxd
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.13 generate.py boutpp.pyx.jinja /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/boutpp.pyx
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.13 generate.py helper.cxx.jinja /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.cxx
[ 97%] Generating helper.h
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.13 generate.py helper.h.jinja /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h
[ 97%] Generating libboutpp.cpp
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy boutpp.pyx libboutpp.pyx
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build && /usr/bin/python3.13 -m cython libboutpp.pyx --cplus -3 -X binding=True -X embedsignature=True
warning: resolve_enum.pxd:49:21: 'deflt' redeclared 
warning: resolve_enum.pxd:189:24: 'Standard' redeclared 
warning: resolve_enum.pxd:223:15: 'Standard' redeclared 
performance hint: libboutpp.pyx:2103:5: Exception check on 'callback' will always require the GIL to be acquired.
Possible solutions:
	1. Declare 'callback' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
	2. Use an 'int' return type on 'callback' to allow an error code to be returned.
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
/usr/bin/gmake  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 97%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/helper.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_313_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build -I/usr/include/python3.13 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/helper.cxx.o -MF CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/helper.cxx.o.d -o CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/helper.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.cxx
[ 97%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/boutexception_helper.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_313_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build -I/usr/include/python3.13 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/boutexception_helper.cxx.o -MF CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/boutexception_helper.cxx.o.d -o CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/boutexception_helper.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/boutexception_helper.cxx
[100%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/libboutpp.cpp.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_313_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build -I/usr/include/python3.13 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/libboutpp.cpp.o -MF CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/libboutpp.cpp.o.d -o CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/libboutpp.cpp.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp
In file included from /usr/include/numpy/ndarraytypes.h:1929,
                 from /usr/include/numpy/ndarrayobject.h:12,
                 from /usr/include/numpy/arrayobject.h:5,
                 from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:1268:
/usr/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:41693:46: warning: ‘__pyx_obj_9libboutpp_Vector2D* __pyx_f_9libboutpp_v2dFromObj(Vector2D)’ defined but not used [-Wunused-function]
41693 | static struct __pyx_obj_9libboutpp_Vector2D *__pyx_f_9libboutpp_v2dFromObj(Vector2D __pyx_v_i) {
      |                                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp: In function ‘__pyx_f_12resolve_enum_resolve_cell_loc(_object*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:9392:10: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized]
 9392 |   return __pyx_r;
      |          ^~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:9035:12: note: ‘__pyx_r’ was declared here
 9035 |   CELL_LOC __pyx_r;
      |            ^~~~~~~
In function ‘__pyx_pf_9libboutpp_54bracket(_object*, __pyx_obj_9libboutpp_Field3D*, __pyx_obj_9libboutpp_Field3D*, _object*, _object*)’,
    inlined from ‘__pyx_pw_9libboutpp_55bracket(_object*, _object* const*, long, _object*)’ at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:66609:42:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:66703:65: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized]
66703 |   __pyx_t_1 = ((PyObject *)__pyx_f_9libboutpp_f3dFromObj(bracket((__pyx_v_a->cobj[0]), (__pyx_v_b->cobj[0]), __pyx_v_method_, __pyx_v_outloc_))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 3044, __pyx_L1_error)
      |                                                          ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp: In function ‘__pyx_pw_9libboutpp_55bracket(_object*, _object* const*, long, _object*)’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:10903:18: note: ‘__pyx_r’ was declared here
10903 |   BRACKET_METHOD __pyx_r;
      |                  ^~~~~~~
[100%] Linking CXX shared library libboutpp.cpython-313-x86_64-linux-gnu.so
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E cmake_link_script CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file=CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libboutpp.cpython-313-x86_64-linux-gnu.so -o libboutpp.cpython-313-x86_64-linux-gnu.so "CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/libboutpp.cpp.o" "CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/helper.cxx.o" "CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/boutexception_helper.cxx.o"  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib: ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[100%] Built target boutpp.cpython-313-x86_64-linux-gnu
/usr/bin/gmake  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
/usr/bin/gmake  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[100%] Building python interface
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpython-313-x86_64-linux-gnu.so /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-313-x86_64-linux-gnu.so
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/../boutpp/__init__.py
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[100%] Built target boutpp
gmake[1]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/CMakeFiles 0

+ PYPA=
+ LDPA=/usr/lib64/mpich/lib
++ pwd
+ export PYTHONPATH=:/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/
+ PYTHONPATH=:/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/
++ pwd
+ export LD_LIBRARY_PATH=/usr/lib64/mpich/lib:/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib/
+ LD_LIBRARY_PATH=/usr/lib64/mpich/lib:/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib/
+ /usr/bin/cmake --build build_mpich/manual -j4 --verbose
Change Dir: '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual'

Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -S/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f -B/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/CMakeFiles /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual//CMakeFiles/progress.marks
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/gmake  -f CMakeFiles/Makefile2 manual/all
gmake[1]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
/usr/bin/gmake  -f manual/CMakeFiles/sphinx-html.dir/build.make manual/CMakeFiles/sphinx-html.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual/CMakeFiles/sphinx-html.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
/usr/bin/gmake  -f manual/CMakeFiles/sphinx-html.dir/build.make manual/CMakeFiles/sphinx-html.dir/build
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[100%] Generating HTML documentation with Sphinx in /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual/docs
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual && /usr/bin/sphinx-build -b html /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual/docs
Running Sphinx v7.3.7
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/usr/lib/python3.13/site-packages/boutdata/collect.py:docstring of boutdata.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :no-index: for one of them
WARNING: autodoc: failed to import module 'mayavi2' from module 'boutdata'; the following exception was raised:
No module named 'enthought'
/usr/lib/python3.13/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:5: ERROR: Unexpected indentation.
/usr/lib/python3.13/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:6: WARNING: Block quote ends without a blank line; unexpected unindent.
/usr/lib/python3.13/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:56: WARNING: Footnote [1] is not referenced.
docstring of libboutpp.PhysicsModel:14: ERROR: Unexpected indentation.
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/boutpp/__init__.py:docstring of libboutpp.create3D:3: ERROR: Unexpected indentation.
WARNING: autodoc: failed to import module 'analyse_equil_2' from module 'boututils'; the following exception was raised:
No module named 'crosslines'
WARNING: autodoc: failed to import module 'anim' from module 'boututils'; the following exception was raised:
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WARNING: autodoc: failed to import module 'boutgrid' from module 'boututils'; the following exception was raised:
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/usr/lib/python3.13/site-packages/boututils/calculus.py:docstring of boututils.calculus.deriv2D:14: ERROR: Unexpected indentation.
WARNING: autodoc: failed to import module 'crosslines' from module 'boututils'; the following exception was raised:
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No module named 'past'
WARNING: autodoc: failed to import module 'fft_deriv' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'int_func' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'mode_structure' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'moment_xyzt' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'radial_grid' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'spectrogram' from module 'boututils'; the following exception was raised:
cannot import name 'pi' from 'scipy' (/usr/lib64/python3.13/site-packages/scipy/__init__.py)
WARNING: autodoc: failed to import module 'surface_average' from module 'boututils'; the following exception was raised:
No module named 'past'
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/usr/lib/python3.13/site-packages/zoidberg/field.py:docstring of zoidberg.field.DommaschkPotentials:3: ERROR: Unexpected indentation.
/usr/lib/python3.13/site-packages/zoidberg/field.py:docstring of zoidberg.field.MagneticField.attributes:1: WARNING: duplicate object description of zoidberg.field.MagneticField.attributes, other instance in _apidoc/zoidberg, use :no-index: for one of them
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/usr/lib/python3.13/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse:3: ERROR: Unexpected indentation.
/usr/lib/python3.13/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse.coil:3: ERROR: Unexpected indentation.
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/api_reference.rst:4: WARNING: toctree glob pattern '_breathe_autogen/*' didn't match any documents
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/file_io.rst:114: ERROR: Unknown interpreted text role "py".
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/performance_profiling.rst:85: WARNING: Inline literal start-string without end-string.
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/boundary_options.rst:120: WARNING: Footnote [#] is not referenced.
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/installing.rst:400: WARNING: Title underline too short.

Working with an active ``conda`` environment
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/installing.rst:400: WARNING: Title underline too short.

Working with an active ``conda`` environment
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/installing.rst:406: ERROR: Unexpected indentation.
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/installing.rst:407: WARNING: Block quote ends without a blank line; unexpected unindent.
/usr/lib/python3.13/site-packages/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :no-index: for one of them
/usr/lib/python3.13/site-packages/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :no-index: for one of them
/usr/lib/python3.13/site-packages/boutdata/__init__.py:docstring of boutdata.collect.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :no-index: for one of them
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/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/running_bout.rst:462: WARNING: Literal block expected; none found.
none found
pickling environment... done
checking consistency... done
preparing documents... WARNING: unsupported theme option 'repository_url' given
WARNING: unsupported theme option 'repository_branch' given
done
WARNING: unsupported theme option 'path_to_docs' given
WARNING: unsupported theme option 'use_edit_page_button' given
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WARNING: unsupported theme option 'use_issues_button' given
WARNING: unsupported theme option 'home_page_in_toc' given
copying assets... copying static files... done
copying extra files... done
done
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/usr/lib/python3.13/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator.normal'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 5]
    numpy.random.Generator.normal
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
      numpy.random.Generator.normal
      -----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator.normal
        -----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator.normal
        -----^

/usr/lib/python3.13/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 5]
    numpy.random.Generator
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
      numpy.random.Generator
      -----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator
        -----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator
        -----^

/usr/lib/python3.13/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: undefined label: 'random-quick-start'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:81: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:87: WARNING: unknown document: '../_breathe_autogen/file/field2d_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:93: WARNING: unknown document: '../_breathe_autogen/file/field3d_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:100: WARNING: unknown document: '../_breathe_autogen/file/field__data_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:105: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:112: WARNING: unknown document: '../_breathe_autogen/file/initialprofiles_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/vecops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:124: WARNING: unknown document: '../_breathe_autogen/file/vector2d_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:129: WARNING: unknown document: '../_breathe_autogen/file/vector3d_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:133: WARNING: unknown document: '../_breathe_autogen/file/where_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft__fftw_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:146: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:154: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:156: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:160: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:162: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:166: WARNING: unknown document: '../_breathe_autogen/file/spt_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:168: WARNING: unknown document: '../_breathe_autogen/file/spt_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:173: WARNING: unknown document: '../_breathe_autogen/file/invert__parderiv_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:181: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:183: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:185: WARNING: unknown document: '../_breathe_autogen/file/lapack__routines_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:191: WARNING: unknown document: '../_breathe_autogen/file/boundary__factory_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:195: WARNING: unknown document: '../_breathe_autogen/file/boundary__region_8cxx'
generating indices... /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:200: WARNING: unknown document: '../_breathe_autogen/file/boundary__standard_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:209: WARNING: unknown document: '../_breathe_autogen/file/interpolation_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:212: WARNING: unknown document: '../_breathe_autogen/file/mesh_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:220: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:224: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:228: WARNING: unknown document: '../_breathe_autogen/file/gyro__average_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:231: WARNING: unknown document: '../_breathe_autogen/file/smoothing_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:234: WARNING: unknown document: '../_breathe_autogen/file/sourcex_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:240: WARNING: unknown document: '../_breathe_autogen/file/solver_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:247: WARNING: unknown document: '../_breathe_autogen/file/cvode_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:251: WARNING: unknown document: '../_breathe_autogen/file/cvode_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:255: WARNING: unknown document: '../_breathe_autogen/file/ida_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:259: WARNING: unknown document: '../_breathe_autogen/file/ida_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:263: WARNING: unknown document: '../_breathe_autogen/file/petsc_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:266: WARNING: unknown document: '../_breathe_autogen/file/petsc_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:270: WARNING: unknown document: '../_breathe_autogen/file/pvode_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:274: WARNING: unknown document: '../_breathe_autogen/file/pvode_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:278: WARNING: unknown document: '../_breathe_autogen/file/boutcomm_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:280: WARNING: unknown document: '../_breathe_autogen/file/boutexception_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:289: WARNING: unknown document: '../_breathe_autogen/file/msg__stack_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:296: WARNING: unknown document: '../_breathe_autogen/file/options_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:300: WARNING: unknown document: '../_breathe_autogen/file/optionsreader_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:302: WARNING: unknown document: '../_breathe_autogen/file/output_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:304: WARNING: unknown document: '../_breathe_autogen/file/range_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:308: WARNING: unknown document: '../_breathe_autogen/file/timer_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:312: WARNING: unknown document: '../_breathe_autogen/file/utils_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:318: WARNING: unknown document: '../_breathe_autogen/file/optionparser_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:320: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/code_layout.rst:322: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/developer_docs/mesh.rst:31: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field2d_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field3d_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8hxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: '&'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    &
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: '|'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    |
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: 'false'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
    false
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: 'true'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
    true
    ----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:153: WARNING: Unparseable C++ cross-reference: '>'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    >
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      >
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      >
      ^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:153: WARNING: Unparseable C++ cross-reference: '<'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    <
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      <
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      <
      ^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:163: WARNING: Unparseable C++ cross-reference: 'true'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
    true
    ----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:163: WARNING: Unparseable C++ cross-reference: 'false'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
    false
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: 'true'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
    true
    ----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4]
      true
      ----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: 'false'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
    false
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5]
      false
      -----^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: '&'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    &
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      &
      ^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: '|'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    |
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      |
      ^

/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/differential_operators.rst:530: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/differential_operators.rst:538: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/laplacian.rst:185: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/output_and_post.rst:580: WARNING: Lexing literal_block 'AppendTo[$Path,"/full/path/to/BOUT/tools/mathematicalib"]' as "mathematica" resulted in an error at token: '$'. Retrying in relaxed mode.
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/physics_models.rst:31: WARNING: undefined label: 'sec-cmake'
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual/sphinx/user_docs/time_integration.rst:1030: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
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build succeeded, 130 warnings.

The HTML pages are in docs.
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual && /usr/bin/cmake -E echo Generated\ HTML\ docs\ in\ file:///builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual/docs/index.html
Generated HTML docs in file:///builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual/docs/index.html
gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[100%] Built target sphinx-html
/usr/bin/gmake  -f manual/CMakeFiles/docs.dir/build.make manual/CMakeFiles/docs.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/manual /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/manual/CMakeFiles/docs.dir/DependInfo.cmake "--color="
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gmake[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
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gmake[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[100%] Built target docs
gmake[1]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/CMakeFiles 0

+ export LD_LIBRARY_PATH=/usr/lib64/mpich/lib
+ LD_LIBRARY_PATH=/usr/lib64/mpich/lib
+ export PYTHONPATH=
+ PYTHONPATH=
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/mpich/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/mpich-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/mpich-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64
+ eval 'unset LD_LIBRARY_PATH;
unset MPI_COMPILER;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset MPI_MAN;
unset MPI_PYTHON_SITEARCH;
unset _LMFILES_;
unset LOADEDMODULES;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_FORTRAN_MOD_DIR;
unset MPI_HOME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SYSCONFIG;
unset MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_PYTHON2_SITEARCH;
unset MPI_LIB;
PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset LD_LIBRARY_PATH
++ unset MPI_COMPILER
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset MPI_MAN
++ unset MPI_PYTHON_SITEARCH
++ unset _LMFILES_
++ unset LOADEDMODULES
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_FORTRAN_MOD_DIR
++ unset MPI_HOME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SYSCONFIG
++ unset MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_PYTHON2_SITEARCH
++ unset MPI_LIB
++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.XwzO6t
+ umask 022
+ cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ '[' /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT
++ dirname /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ mkdir /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd BOUT++-v5.2.0.dev574+ge3f21cd2f
+ for mpi in openmpi mpich
+ '[' openmpi = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/openmpi-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/openmpi-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64
+ eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER;
LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH;
MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN;
MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE;
_LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_;
LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES;
CMAKE_PREFIX_PATH=/usr/lib64/openmpi; export CMAKE_PREFIX_PATH;
PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi; export MPI_PYTHON3_SITEARCH;
MPI_HOME=/usr/lib64/openmpi; export MPI_HOME;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR;
__MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME;
__MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SUFFIX=_openmpi; export MPI_SUFFIX;
MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB;
PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN;
test 0;'
++ MPI_COMPILER=openmpi-x86_64
++ export MPI_COMPILER
++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
++ export LD_LIBRARY_PATH
++ MPI_MAN=/usr/share/man/openmpi-x86_64
++ export MPI_MAN
++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/openmpi-x86_64
++ export MPI_INCLUDE
++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64
++ export _LMFILES_
++ LOADEDMODULES=mpi/openmpi-x86_64
++ export LOADEDMODULES
++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi
++ export CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi
++ export MPI_PYTHON3_SITEARCH
++ MPI_HOME=/usr/lib64/openmpi
++ export MPI_HOME
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi
++ export MPI_FORTRAN_MOD_DIR
++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest'
++ export __MODULES_LMALTNAME
++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SUFFIX=_openmpi
++ export MPI_SUFFIX
++ MPI_SYSCONFIG=/etc/openmpi-x86_64
++ export MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_LIB=/usr/lib64/openmpi/lib
++ export MPI_LIB
++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/openmpi/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ DESTDIR=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT
+ /usr/bin/cmake --install build_openmpi
-- Install configuration: "RelWithDebInfo"
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13/site-packages/openmpi/boutpp/libboutpp.cpython-313-x86_64-linux-gnu.so
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13/site-packages/openmpi/boutpp/libboutpp.cpython-313-x86_64-linux-gnu.so" to "/usr//usr/lib64/openmpi/lib"
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13/site-packages/openmpi/boutpp/__init__.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/libpvode.so.1.0.0
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/libpvode.so.1.0.0" to "/usr//usr/lib64/openmpi/lib"
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/libpvode.so
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/libpvpre.so.1.0.0
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/libpvpre.so.1.0.0" to "/usr//usr/lib64/openmpi/lib"
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/libpvpre.so
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/band.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/cvdiag.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/cvode.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/cvspgmr.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/iterativ.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/llnlmath.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/llnltyps.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/nvector.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/pvbbdpre.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/smalldense.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/spgmr.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/vector.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/PVODE/PVODETargets.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/PVODE/PVODETargets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/locale/es/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/locale/de/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/locale/fr/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/locale/zh_CN/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/locale/zh_TW/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/libbout++.so.5.1.0
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/libbout++.so.5.1.0" to "/usr//usr/lib64/openmpi/lib"
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/libbout++.so
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/boundary_factory.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/boundary_op.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/boundary_region.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/boundary_standard.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/adios_object.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/array.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/assert.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/boundary_factory.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/boundary_op.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/boundary_region.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/boundary_standard.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/bout.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/bout_enum_class.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/bout_types.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/boutcomm.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/boutexception.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/build_config.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/caliper_wrapper.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/constants.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/coordinates.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/coordinates_accessor.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/cyclic_reduction.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/dcomplex.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/deriv_store.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/derivs.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/difops.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/expr.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/fft.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/field.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/field2d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/field3d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/field_accessor.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/field_data.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/field_factory.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/fieldgroup.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/fieldperp.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/fv_ops.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/generic_factory.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/globalfield.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/globalindexer.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/globals.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/griddata.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/gyro_average.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/hypre_interface.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/hyprelib.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/index_derivs.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/index_derivs_interface.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/initialprofiles.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/interpolation.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/interpolation_xz.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/interpolation_z.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/invert
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/invert/laplacexy.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/invert/laplacexy2.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/invert/laplacexy2_hypre.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/invert/laplacexz.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/invert_laplace.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/invert_parderiv.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/invert_pardiv.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/invertable_operator.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/lapack_routines.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/macro_for_each.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/mask.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/mesh.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/monitor.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/mpi_wrapper.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/msg_stack.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/multiostream.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/openmpwrap.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/operatorstencil.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/options.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/options_io.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/optionsreader.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/output.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/parallel_boundary_op.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/rkscheme.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/smoothing.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/snb.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/solver.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/solverfactory.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/sourcex.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/stencils.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/sundials_backports.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/surfaceiter.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/sys
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-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/sys/generator_context.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/sys/gettext.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/traits.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/unused.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/utils.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/vecops.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/vector2d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/vector3d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/vectormetric.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout/where.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/bout_types.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/boutcomm.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/boutexception.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/cyclic_reduction.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/optionsreader.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/smoothing.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/vector2d.hxx
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-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/bin/bout-v5-format-upgrader.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/bin/bout-v5-header-upgrader.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/bin/bout-v5-input-file-upgrader.py
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-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/bin/bout-v5-physics-model-upgrader.py
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-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/bin/bout_3to4.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/bin/bout_4to5
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/bin/bout-config
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13/site-packages/openmpi/boutconfig/__init__.py
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-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/CorrectWindowsPaths.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindClangFormat.cmake
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-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindHYPRE.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindnetCDF.cmake
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-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindPETSc.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindScoreP.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindSLEPc.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindSUNDIALS.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindSphinx.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/ResolveCompilerPaths.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/bout++Config.cmake
++ find /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/python3.13/site-packages/openmpi
++ grep -E '/libbout|/libpvode|/libpvpre'
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so.1.0.0
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so.1.0.0: RUNPATH=/usr//usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so.1.0.0: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so: RUNPATH=/usr/lib64/openmpi/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so.1.0.0
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so.1.0.0: RUNPATH=/usr//usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so.1.0.0: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so: RUNPATH=/usr/lib64/openmpi/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so.5.1.0
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so.5.1.0: RUNPATH=/usr//usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so.5.1.0: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so: RUNPATH=/usr/lib64/openmpi/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/python3.13/site-packages/openmpi/boutpp/libboutpp.cpython-313-x86_64-linux-gnu.so
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/python3.13/site-packages/openmpi/boutpp/libboutpp.cpython-313-x86_64-linux-gnu.so: RUNPATH=/usr//usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/python3.13/site-packages/openmpi/boutpp/libboutpp.cpython-313-x86_64-linux-gnu.so: new RUNPATH: /usr/lib64/openmpi/lib
+ rm -rf /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/bout++
+ mkdir -p /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/modulefiles/bout++
+ cat
+ DESTDIR=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT
+ /usr/bin/cmake --install build_openmpi/manual
-- Install configuration: "RelWithDebInfo"
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++/
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/pygments.css
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/basic.css
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/doctools.js
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/documentation_options.js
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/file.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/language_data.js
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/minus.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/plus.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/searchtools.js
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/sphinx_highlight.js
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/contents.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/navigation.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/sphinxdoc.css
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/css
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/css/custom.css
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_apidoc
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_apidoc/boutdata.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_apidoc/boutpp.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_apidoc/boututils.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_apidoc/zoidberg.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/_apidoc
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/_apidoc/boutdata.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/_apidoc/boutpp.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/_apidoc/boututils.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/_apidoc/zoidberg.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/api_reference.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/code_layout.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/contributing.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/data_types.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/file_io.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/git_basics.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/mesh.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/natural_language.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/performance_profiling.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/petsc_interface.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/index.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/BOUT_Gradperp_op.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/adios2.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/advanced_install.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/algebraic_operators.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/boundary_options.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/bout_functions_for_physics.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/bout_options.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/coordinates.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/differential_operators.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/eigenvalue_solver.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/gpu_support.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/input_grids.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/installing.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/introduction.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/invertable_operator.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/laplacian.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/makefiles.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/new_in_v5.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/nonlocal.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/output_and_post.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/parallel-transforms.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/petsc.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/physics_models.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/preconditioning.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/python.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/python_boutpp.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/quickstart.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/running_bout.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/staggered_grids.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/testing.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/time_integration.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/variable_init.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//api_reference.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/code_layout.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/contributing.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/data_types.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/file_io.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/git_basics.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/mesh.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/natural_language.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/performance_profiling.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/petsc_interface.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//index.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs
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-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/python_boutpp.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/quickstart.html
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-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//objects.inv
+ '[' openmpi = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/openmpi/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/openmpi-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/openmpi-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64
+ eval 'unset MPI_COMPILER;
unset LD_LIBRARY_PATH;
unset MPI_MAN;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset _LMFILES_;
unset LOADEDMODULES;
unset CMAKE_PREFIX_PATH;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_HOME;
unset MPI_FORTRAN_MOD_DIR;
unset __MODULES_LMALTNAME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SUFFIX;
unset MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_LIB;
PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset MPI_COMPILER
++ unset LD_LIBRARY_PATH
++ unset MPI_MAN
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset _LMFILES_
++ unset LOADEDMODULES
++ unset CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_HOME
++ unset MPI_FORTRAN_MOD_DIR
++ unset __MODULES_LMALTNAME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SUFFIX
++ unset MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_LIB
++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ for mpi in openmpi mpich
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ LOADEDMODULES=
++++ export LOADEDMODULES
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/mpich-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/mpich-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64
+ eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH;
MPI_COMPILER=mpich-x86_64; export MPI_COMPILER;
MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE;
MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN;
MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH;
_LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_;
LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES;
PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/mpich; export MPI_PYTHON3_SITEARCH;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR;
MPI_HOME=/usr/lib64/mpich; export MPI_HOME;
__MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG;
MPI_SUFFIX=_mpich; export MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH;
MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB;
PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN;
test 0;'
++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib
++ export LD_LIBRARY_PATH
++ MPI_COMPILER=mpich-x86_64
++ export MPI_COMPILER
++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/mpich-x86_64
++ export MPI_INCLUDE
++ MPI_MAN=/usr/share/man/mpich-x86_64
++ export MPI_MAN
++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON_SITEARCH
++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64
++ export _LMFILES_
++ LOADEDMODULES=mpi/mpich-x86_64
++ export LOADEDMODULES
++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/mpich
++ export MPI_PYTHON3_SITEARCH
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich
++ export MPI_FORTRAN_MOD_DIR
++ MPI_HOME=/usr/lib64/mpich
++ export MPI_HOME
++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SYSCONFIG=/etc/mpich-x86_64
++ export MPI_SYSCONFIG
++ MPI_SUFFIX=_mpich
++ export MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON2_SITEARCH
++ MPI_LIB=/usr/lib64/mpich/lib
++ export MPI_LIB
++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/mpich/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ DESTDIR=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT
+ /usr/bin/cmake --install build_mpich
-- Install configuration: "RelWithDebInfo"
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13/site-packages/mpich/boutpp/libboutpp.cpython-313-x86_64-linux-gnu.so
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13/site-packages/mpich/boutpp/libboutpp.cpython-313-x86_64-linux-gnu.so" to "/usr//usr/lib64/mpich/lib"
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13/site-packages/mpich/boutpp/__init__.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/libpvode.so.1.0.0
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/libpvode.so.1.0.0" to "/usr//usr/lib64/mpich/lib"
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/libpvode.so
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/libpvpre.so.1.0.0
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/libpvpre.so.1.0.0" to "/usr//usr/lib64/mpich/lib"
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/libpvpre.so
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/band.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/cvdiag.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/cvode.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/cvspgmr.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/iterativ.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/llnlmath.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/llnltyps.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/nvector.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/pvbbdpre.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/smalldense.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/spgmr.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/vector.h
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/PVODE/PVODETargets.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/PVODE/PVODETargets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/locale/es/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/locale/de/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/locale/fr/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/locale/zh_CN/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/locale/zh_TW/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/libbout++.so.5.1.0
-- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/libbout++.so.5.1.0" to "/usr//usr/lib64/mpich/lib"
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/libbout++.so
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/boundary_factory.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/boundary_op.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/boundary_region.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/boundary_standard.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/adios_object.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/array.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/assert.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/boundary_factory.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/boundary_op.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/boundary_region.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/boundary_standard.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/bout.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/bout_enum_class.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/bout_types.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/boutcomm.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/boutexception.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/build_config.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/caliper_wrapper.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/constants.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/coordinates.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/coordinates_accessor.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/cyclic_reduction.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/dcomplex.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/deriv_store.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/derivs.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/difops.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/expr.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/fft.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/field.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/field2d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/field3d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/field_accessor.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/field_data.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/field_factory.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/fieldgroup.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/fieldperp.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/fv_ops.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/generic_factory.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/globalfield.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/globalindexer.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/globals.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/griddata.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/gyro_average.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/hypre_interface.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/hyprelib.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/index_derivs.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/index_derivs_interface.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/initialprofiles.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/interpolation.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/interpolation_xz.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/interpolation_z.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/invert
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/invert/laplacexy.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/invert/laplacexy2.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/invert/laplacexy2_hypre.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/invert/laplacexz.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/invert_laplace.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/invert_parderiv.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/invert_pardiv.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/invertable_operator.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/lapack_routines.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/macro_for_each.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/mask.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/mesh.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/monitor.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/mpi_wrapper.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/msg_stack.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/multiostream.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/openmpwrap.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/operatorstencil.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/options.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/options_io.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/optionsreader.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/output.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/output_bout_types.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/parallel_boundary_op.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/parallel_boundary_region.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/paralleltransform.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/petsc_interface.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/petsclib.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/physicsmodel.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/rajalib.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/region.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/rkscheme.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/rvec.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/scorepwrapper.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/single_index_ops.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/slepclib.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/smoothing.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/snb.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/solver.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/solverfactory.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/sourcex.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/stencils.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/sundials_backports.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/surfaceiter.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/sys
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/sys/expressionparser.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/sys/generator_context.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/sys/gettext.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/sys/range.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/sys/timer.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/sys/type_name.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/sys/uncopyable.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/sys/variant.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/template_combinations.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/traits.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/unused.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/utils.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/vecops.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/vector2d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/vector3d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/vectormetric.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/where.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout_types.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/boutcomm.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/boutexception.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/cyclic_reduction.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/dcomplex.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/derivs.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/difops.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/fft.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/field.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/field2d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/field3d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/field_data.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/field_factory.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/fieldperp.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/globals.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/gyro_average.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/initialprofiles.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/interpolation.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/interpolation_xz.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/interpolation_z.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/invert_laplace.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/invert_parderiv.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/lapack_routines.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/mask.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/msg_stack.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/multiostream.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/options.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/options_netcdf.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/optionsreader.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/output.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/parallel_boundary_op.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/parallel_boundary_region.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/smoothing.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/sourcex.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/stencils.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/unused.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/utils.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/vecops.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/vector2d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/vector3d.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/where.hxx
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/version.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/revision.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/build_defines.hxx
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-add-mod-path
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-archive-helper.sh
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-boutdata-restart-create
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-build-deps.sh
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-changelog-generator.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-log-color
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-sonnet
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-stop-script
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-v5-factory-upgrader.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-v5-format-upgrader.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-v5-header-upgrader.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-v5-input-file-upgrader.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-v5-macro-upgrader.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-v5-physics-model-upgrader.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-v5-xzinterpolation-upgrader.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout_3to4.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout_4to5
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/bin/bout-config
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13/site-packages/mpich/boutconfig/__init__.py
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/bout++Targets.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/bout++Targets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/bout++ConfigVersion.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/BOUT++functions.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/CorrectWindowsPaths.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindClangFormat.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindFFTW.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindHYPRE.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindnetCDF.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindnetCDFCxx.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindPackageMultipass.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindLibuuid.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindPETSc.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindScoreP.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindSLEPc.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindSUNDIALS.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindSphinx.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/ResolveCompilerPaths.cmake
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/bout++Config.cmake
++ find /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/python3.13/site-packages/mpich
++ grep -E '/libbout|/libpvode|/libpvpre'
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so.1.0.0
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so.1.0.0: RUNPATH=/usr//usr/lib64/mpich/lib:/usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so.1.0.0: new RUNPATH: /usr/lib64/mpich/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so: RUNPATH=/usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so: new RUNPATH: /usr/lib64/mpich/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so.1.0.0
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so.1.0.0: RUNPATH=/usr//usr/lib64/mpich/lib:/usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so.1.0.0: new RUNPATH: /usr/lib64/mpich/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so: RUNPATH=/usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so: new RUNPATH: /usr/lib64/mpich/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so.5.1.0
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so.5.1.0: RUNPATH=/usr//usr/lib64/mpich/lib:/usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so.5.1.0: new RUNPATH: /usr/lib64/mpich/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so: RUNPATH=/usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so: new RUNPATH: /usr/lib64/mpich/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/python3.13/site-packages/mpich/boutpp/libboutpp.cpython-313-x86_64-linux-gnu.so
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/python3.13/site-packages/mpich/boutpp/libboutpp.cpython-313-x86_64-linux-gnu.so: RUNPATH=/usr//usr/lib64/mpich/lib:/usr/lib64/mpich/lib
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT//usr/lib64/python3.13/site-packages/mpich/boutpp/libboutpp.cpython-313-x86_64-linux-gnu.so: new RUNPATH: /usr/lib64/mpich/lib
+ rm -rf /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/bout++
+ mkdir -p /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/modulefiles/bout++
+ cat
+ DESTDIR=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT
+ /usr/bin/cmake --install build_mpich/manual
-- Install configuration: "RelWithDebInfo"
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++/
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/pygments.css
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/basic.css
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/doctools.js
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/documentation_options.js
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/file.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/language_data.js
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/minus.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/plus.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/searchtools.js
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/sphinx_highlight.js
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/contents.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/navigation.png
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/sphinxdoc.css
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/css
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_static/css/custom.css
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_apidoc
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_apidoc/boutdata.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_apidoc/boutpp.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_apidoc/boututils.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_apidoc/zoidberg.html
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/_apidoc
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/_apidoc/boutdata.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/_apidoc/boutpp.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/_apidoc/boututils.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/_apidoc/zoidberg.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/api_reference.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/code_layout.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/contributing.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/data_types.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/file_io.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/git_basics.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/mesh.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/natural_language.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/performance_profiling.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/developer_docs/petsc_interface.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/index.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/BOUT_Gradperp_op.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/adios2.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/advanced_install.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/algebraic_operators.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/boundary_options.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/bout_functions_for_physics.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/bout_options.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/coordinates.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/differential_operators.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/eigenvalue_solver.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/gpu_support.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/input_grids.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/installing.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/introduction.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/invertable_operator.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/laplacian.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/makefiles.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/new_in_v5.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/nonlocal.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/output_and_post.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/parallel-transforms.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/petsc.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/physics_models.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/preconditioning.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/python.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/python_boutpp.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/quickstart.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/running_bout.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/staggered_grids.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/testing.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/time_integration.rst.txt
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_sources/user_docs/variable_init.rst.txt
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//api_reference.html
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/code_layout.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/contributing.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/data_types.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/file_io.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/git_basics.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/mesh.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/natural_language.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/performance_profiling.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//developer_docs/petsc_interface.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//index.html
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/BOUT_Gradperp_op.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/adios2.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/advanced_install.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/algebraic_operators.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/boundary_options.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/bout_functions_for_physics.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/bout_options.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/coordinates.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/differential_operators.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/eigenvalue_solver.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/gpu_support.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/input_grids.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/installing.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/introduction.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/invertable_operator.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/laplacian.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/makefiles.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/new_in_v5.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/nonlocal.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/output_and_post.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/parallel-transforms.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/petsc.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/physics_models.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/preconditioning.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/python.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/python_boutpp.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/quickstart.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/running_bout.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/staggered_grids.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/testing.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/time_integration.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//user_docs/variable_init.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//genindex.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//py-modindex.html
-- Installing: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//search.html
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/layout1.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/layout2.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/memory.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/petsc_interface_overview.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/operator_stencil_uml.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/petsc_vector_set.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/fluid_norm_mc.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/diffStencils.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/topology_cross_section.svg
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/topology_schematic.svg
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/boutmesh-comms.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/grid_gen.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/elliptic_grid.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/poincare.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/5PointStencilMesh.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/5PointStencilMeshWithStencil.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/5PointStencilMatrix.png
-- Up-to-date: /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++//_images/5PointStencilGlobalIndices.png
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+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/mpich/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/mpich-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/mpich-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64
+ eval 'unset LD_LIBRARY_PATH;
unset MPI_COMPILER;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset MPI_MAN;
unset MPI_PYTHON_SITEARCH;
unset _LMFILES_;
unset LOADEDMODULES;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_FORTRAN_MOD_DIR;
unset MPI_HOME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SYSCONFIG;
unset MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_PYTHON2_SITEARCH;
unset MPI_LIB;
PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset LD_LIBRARY_PATH
++ unset MPI_COMPILER
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset MPI_MAN
++ unset MPI_PYTHON_SITEARCH
++ unset _LMFILES_
++ unset LOADEDMODULES
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_FORTRAN_MOD_DIR
++ unset MPI_HOME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SYSCONFIG
++ unset MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_PYTHON2_SITEARCH
++ unset MPI_LIB
++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ /usr/lib/rpm/find-lang.sh /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT libbout
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 5.2.0.dev574+ge3f21cd2f-1.fc42 --unique-debug-suffix -5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64 --unique-debug-src-base bout++-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f
find-debuginfo: starting
Extracting debug info from 8 files
DWARF-compressing 8 files
sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/bout++-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/lib64/openmpi/bin/bout-add-mod-path from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-archive-helper.sh from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/openmpi/bin/bout-boutdata-restart-create from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-build-deps.sh from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/openmpi/bin/bout-changelog-generator.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-log-color from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/lib64/openmpi/bin/bout-sonnet from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-stop-script from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-factory-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-format-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-header-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-input-file-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-macro-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-physics-model-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-xzinterpolation-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout_3to4.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout_4to5 from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/openmpi/bin/bout-config from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/lib64/mpich/bin/bout-add-mod-path from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-archive-helper.sh from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/mpich/bin/bout-boutdata-restart-create from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-build-deps.sh from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/mpich/bin/bout-changelog-generator.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-log-color from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/lib64/mpich/bin/bout-sonnet from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-stop-script from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/mpich/bin/bout-v5-factory-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-format-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-header-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-input-file-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-macro-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-physics-model-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-xzinterpolation-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout_3to4.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout_4to5 from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/mpich/bin/bout-config from /bin/sh to #!/usr/bin/sh
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4
Bytecompiling .py files below /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13 using python3.13
Bytecompiling .py files below /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13/site-packages/openmpi/boutpp/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13/site-packages/mpich/boutpp/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13/site-packages/openmpi/boutconfig/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/lib64/python3.13/site-packages/mpich/boutconfig/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
Scanned 170 directories and 882 files,
               processed 54 inodes,
               4 modified (0 replaced + 4 rewritten),
               0 unsupported format, 0 errors
Reading /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.0mAlP7
+ umask 022
+ cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd BOUT++-v5.2.0.dev574+ge3f21cd2f
+ for mpi in openmpi mpich
+ fail=1
+ '[' openmpi = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/openmpi-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/openmpi-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64
+ eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER;
LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH;
MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN;
MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE;
_LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_;
LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES;
CMAKE_PREFIX_PATH=/usr/lib64/openmpi; export CMAKE_PREFIX_PATH;
PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi; export MPI_PYTHON3_SITEARCH;
MPI_HOME=/usr/lib64/openmpi; export MPI_HOME;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR;
__MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME;
__MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SUFFIX=_openmpi; export MPI_SUFFIX;
MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB;
PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN;
test 0;'
++ MPI_COMPILER=openmpi-x86_64
++ export MPI_COMPILER
++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
++ export LD_LIBRARY_PATH
++ MPI_MAN=/usr/share/man/openmpi-x86_64
++ export MPI_MAN
++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/openmpi-x86_64
++ export MPI_INCLUDE
++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64
++ export _LMFILES_
++ LOADEDMODULES=mpi/openmpi-x86_64
++ export LOADEDMODULES
++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi
++ export CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi
++ export MPI_PYTHON3_SITEARCH
++ MPI_HOME=/usr/lib64/openmpi
++ export MPI_HOME
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi
++ export MPI_FORTRAN_MOD_DIR
++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest'
++ export __MODULES_LMALTNAME
++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SUFFIX=_openmpi
++ export MPI_SUFFIX
++ MPI_SYSCONFIG=/etc/openmpi-x86_64
++ export MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_LIB=/usr/lib64/openmpi/lib
++ export MPI_LIB
++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/openmpi/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi ~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f
+ pushd build_openmpi
+ export OMPI_MCA_rmaps_base_oversubscribe=yes
+ OMPI_MCA_rmaps_base_oversubscribe=yes
+ export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ export HDF5_USE_FILE_LOCKING=FALSE
+ HDF5_USE_FILE_LOCKING=FALSE
+ sed 's/ 3s / 30s /' -i tests/integrated/test-coordinates-initialization/runtest
+ make build-check-integrated-tests
/usr/bin/cmake -S/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f -B/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
make  -f CMakeFiles/Makefile2 build-check-integrated-tests
make[1]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/cmake -S/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f -B/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles 55
make  -f CMakeFiles/Makefile2 CMakeFiles/build-check-integrated-tests.dir/all
make[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvpre.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[  1%] Built target pvpre
make  -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvode.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[  5%] Built target pvode
make  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles/bout++.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'CMakeFiles/bout++.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 58%] Built target bout++
make  -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-yupdown-weights /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown-weights /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 58%] Building CXX object tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown-weights && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-yupdown-weights -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o -MF CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o.d -o CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-yupdown-weights/test_yupdown_weights.cxx
[ 60%] Linking CXX executable test_yupdown_weights
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown-weights && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-yupdown-weights.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-yupdown-weights.dir/link.d "CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o" -o test_yupdown_weights  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 60%] Built target test-yupdown-weights
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 63%] Built target boutpp.cpython-313-x86_64-linux-gnu
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 63%] Building python interface
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpython-313-x86_64-linux-gnu.so /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-313-x86_64-linux-gnu.so
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/../boutpp/__init__.py
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 63%] Built target boutpp
make  -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-backtrace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-backtrace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 63%] Building CXX object tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/boutexcept.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-backtrace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-backtrace -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/boutexcept.cxx.o -MF CMakeFiles/test-backtrace.dir/boutexcept.cxx.o.d -o CMakeFiles/test-backtrace.dir/boutexcept.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-backtrace/boutexcept.cxx
[ 65%] Linking CXX executable boutexcept
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-backtrace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-backtrace.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-backtrace.dir/link.d "CMakeFiles/test-backtrace.dir/boutexcept.cxx.o" -o boutexcept  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 65%] Built target test-backtrace
make  -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-beuler /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-beuler /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 65%] Building CXX object tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/test_beuler.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-beuler && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-beuler -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/test_beuler.cxx.o -MF CMakeFiles/test_beuler.dir/test_beuler.cxx.o.d -o CMakeFiles/test_beuler.dir/test_beuler.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-beuler/test_beuler.cxx
[ 65%] Linking CXX executable test_beuler
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-beuler && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_beuler.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_beuler.dir/link.d CMakeFiles/test_beuler.dir/test_beuler.cxx.o -o test_beuler  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 65%] Built target test_beuler
make  -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 65%] Building CXX object tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-bout-override-default-option && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-bout-override-default-option -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o -MF CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o.d -o CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-bout-override-default-option/test-bout-override-default-option.cxx
[ 65%] Linking CXX executable test-bout-override-default-option
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-bout-override-default-option && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-bout-override-default-option.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-bout-override-default-option.dir/link.d "CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o" -o test-bout-override-default-option  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 65%] Built target test-bout-override-default-option
make  -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-command-args /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-command-args /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 65%] Building CXX object tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/command-args.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-command-args && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-command-args -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/command-args.cxx.o -MF CMakeFiles/test-command-args.dir/command-args.cxx.o.d -o CMakeFiles/test-command-args.dir/command-args.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-command-args/command-args.cxx
[ 67%] Linking CXX executable command-args
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-command-args && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-command-args.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-command-args.dir/link.d "CMakeFiles/test-command-args.dir/command-args.cxx.o" -o command-args  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 67%] Built target test-command-args
make  -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-communications /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-communications /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-communications/CMakeFiles/test-communications.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 67%] Building CXX object tests/integrated/test-communications/CMakeFiles/test-communications.dir/test-communications.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-communications && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-communications -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-communications/CMakeFiles/test-communications.dir/test-communications.cxx.o -MF CMakeFiles/test-communications.dir/test-communications.cxx.o.d -o CMakeFiles/test-communications.dir/test-communications.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-communications/test-communications.cxx
[ 67%] Linking CXX executable test-communications
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-communications && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-communications.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-communications.dir/link.d "CMakeFiles/test-communications.dir/test-communications.cxx.o" -o test-communications  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 67%] Built target test-communications
make  -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 67%] Building CXX object tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-coordinates-initialization && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-coordinates-initialization -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o -MF CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o.d -o CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-coordinates-initialization/test-coordinates-initialization.cxx
[ 69%] Linking CXX executable test-coordinates-initialization
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-coordinates-initialization && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-coordinates-initialization.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-coordinates-initialization.dir/link.d "CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o" -o test-coordinates-initialization  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 69%] Built target test-coordinates-initialization
make  -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-cyclic /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-cyclic /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 69%] Building CXX object tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-cyclic && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-cyclic -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o -MF CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o.d -o CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-cyclic/test_cyclic.cxx
[ 69%] Linking CXX executable test_cyclic
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-cyclic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-cyclic.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-cyclic.dir/link.d "CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o" -o test_cyclic  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 69%] Built target test-cyclic
make  -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-delp2 /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-delp2 /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 70%] Building CXX object tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/test_delp2.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-delp2 && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-delp2 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/test_delp2.cxx.o -MF CMakeFiles/test-delp2.dir/test_delp2.cxx.o.d -o CMakeFiles/test-delp2.dir/test_delp2.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-delp2/test_delp2.cxx
[ 70%] Linking CXX executable test_delp2
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-delp2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-delp2.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-delp2.dir/link.d "CMakeFiles/test-delp2.dir/test_delp2.cxx.o" -o test_delp2  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 70%] Built target test-delp2
make  -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-datafilefacade /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-datafilefacade /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 70%] Building CXX object tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-datafilefacade && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-datafilefacade -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o -MF CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o.d -o CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-datafilefacade/test-datafile-facade.cxx
[ 70%] Linking CXX executable test-datafile-facade
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-datafilefacade && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-datafile-facade.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-datafile-facade.dir/link.d "CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o" -o test-datafile-facade  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 70%] Built target test-datafile-facade
make  -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-drift-instability /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 72%] Building CXX object tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/2fluid.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-drift-instability -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/2fluid.cxx.o -MF CMakeFiles/test-drift-instability.dir/2fluid.cxx.o.d -o CMakeFiles/test-drift-instability.dir/2fluid.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-drift-instability/2fluid.cxx
[ 72%] Linking CXX executable 2fluid
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-drift-instability.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-drift-instability.dir/link.d "CMakeFiles/test-drift-instability.dir/2fluid.cxx.o" -o 2fluid  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 72%] Built target test-drift-instability
make  -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 72%] Building CXX object tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability-staggered && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-drift-instability-staggered -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o -MF CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o.d -o CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-drift-instability-staggered/2fluid.cxx
[ 72%] Linking CXX executable 2fluid
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-drift-instability-staggered && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-drift-instability-staggered.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-drift-instability-staggered.dir/link.d "CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o" -o 2fluid  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 72%] Built target test-drift-instability-staggered
make  -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 72%] Building CXX object tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fieldgroupComm && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-fieldgroupComm -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o -MF CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o.d -o CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-fieldgroupComm/test_fieldgroupcomm.cxx
[ 74%] Linking CXX executable test_fieldgroupcomm
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-fieldgroupComm && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-fieldgroupComm.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-fieldgroupComm.dir/link.d "CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o" -o test_fieldgroupcomm  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 74%] Built target test-fieldgroupComm
make  -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-griddata /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 74%] Building CXX object tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/test_griddata.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-griddata -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/test_griddata.cxx.o -MF CMakeFiles/test-griddata.dir/test_griddata.cxx.o.d -o CMakeFiles/test-griddata.dir/test_griddata.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-griddata/test_griddata.cxx
[ 74%] Linking CXX executable test_griddata
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-griddata.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-griddata.dir/link.d "CMakeFiles/test-griddata.dir/test_griddata.cxx.o" -o test_griddata  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 74%] Built target test-griddata
make  -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 74%] Building CXX object tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata-yboundary-guards && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-griddata-yboundary-guards -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o -MF CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o.d -o CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-griddata-yboundary-guards/test_griddata.cxx
[ 74%] Linking CXX executable test_griddata
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-griddata-yboundary-guards && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-griddata-yboundary-guards.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-griddata-yboundary-guards.dir/link.d "CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o" -o test_griddata  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 74%] Built target test-griddata-yboundary-guards
make  -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-gyro /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-gyro /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 76%] Building CXX object tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/test_gyro.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-gyro && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-gyro -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/test_gyro.cxx.o -MF CMakeFiles/test-gyro.dir/test_gyro.cxx.o.d -o CMakeFiles/test-gyro.dir/test_gyro.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-gyro/test_gyro.cxx
[ 76%] Linking CXX executable test_gyro
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-gyro && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-gyro.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-gyro.dir/link.d "CMakeFiles/test-gyro.dir/test_gyro.cxx.o" -o test_gyro  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 76%] Built target test-gyro
make  -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-initial /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-initial /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-initial/CMakeFiles/test-initial.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 76%] Building CXX object tests/integrated/test-initial/CMakeFiles/test-initial.dir/test_initial.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-initial && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-initial -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-initial/CMakeFiles/test-initial.dir/test_initial.cxx.o -MF CMakeFiles/test-initial.dir/test_initial.cxx.o.d -o CMakeFiles/test-initial.dir/test_initial.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-initial/test_initial.cxx
[ 76%] Linking CXX executable test_initial
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-initial && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-initial.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-initial.dir/link.d "CMakeFiles/test-initial.dir/test_initial.cxx.o" -o test_initial  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 76%] Built target test-initial
make  -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interchange-instability /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interchange-instability /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 78%] Building CXX object tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interchange-instability && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interchange-instability -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o -MF CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o.d -o CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interchange-instability/2fluid.cxx
[ 78%] Linking CXX executable 2fluid
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interchange-instability && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interchange-instability.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-interchange-instability.dir/link.d "CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o" -o 2fluid  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 78%] Built target test-interchange-instability
make  -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interpolate /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 78%] Building CXX object tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interpolate -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o -MF CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o.d -o CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interpolate/test_interpolate.cxx
[ 78%] Linking CXX executable test_interpolate
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interpolate.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-interpolate.dir/link.d "CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o" -o test_interpolate  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 78%] Built target test-interpolate
make  -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interpolate-z /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate-z /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 80%] Building CXX object tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate-z && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interpolate-z -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o -MF CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o.d -o CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interpolate-z/test_interpolate.cxx
[ 80%] Linking CXX executable test_interpolate
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-interpolate-z && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interpolate-z.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-interpolate-z.dir/link.d "CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o" -o test_interpolate  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 80%] Built target test-interpolate-z
make  -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invertable-operator /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invertable-operator /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 80%] Building CXX object tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invertable-operator && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invertable-operator -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o -MF CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o.d -o CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invertable-operator/invertable_operator.cxx
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invertable-operator/invertable_operator.cxx:4:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx: In instantiation of ‘PetscErrorCode bout::inversion::InvertableOperator<T>::setup() [with T = Field3D; PetscErrorCode = int]’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invertable-operator/invertable_operator.cxx:51:19:   required from here
   51 |     mySolver.setup();
      |     ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:222:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  222 |         if (localmesh->firstY() or localmesh->lastY()) {
      |             ~~~~~~~~~~~~~~~~~^~
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:44:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:447:66: note: declared here
  447 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:222:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  222 |         if (localmesh->firstY() or localmesh->lastY()) {
      |             ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:447:66: note: declared here
  447 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:222:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  222 |         if (localmesh->firstY() or localmesh->lastY()) {
      |                                    ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:451:65: note: declared here
  451 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:222:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  222 |         if (localmesh->firstY() or localmesh->lastY()) {
      |                                    ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:451:65: note: declared here
  451 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:225:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  225 |               if (localmesh->firstY()) {
      |                   ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:447:66: note: declared here
  447 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:225:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  225 |               if (localmesh->firstY()) {
      |                   ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:447:66: note: declared here
  447 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:231:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  231 |               if (localmesh->lastY()) {
      |                   ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:451:65: note: declared here
  451 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:231:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  231 |               if (localmesh->lastY()) {
      |                   ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:451:65: note: declared here
  451 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
[ 80%] Linking CXX executable invertable_operator
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invertable-operator && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-invertable-operator.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-invertable-operator.dir/link.d "CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o" -o invertable_operator  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 80%] Built target test-invertable-operator
make  -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invpar /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invpar /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 81%] Building CXX object tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/test_invpar.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invpar && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invpar -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/test_invpar.cxx.o -MF CMakeFiles/test-invpar.dir/test_invpar.cxx.o.d -o CMakeFiles/test-invpar.dir/test_invpar.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invpar/test_invpar.cxx
[ 81%] Linking CXX executable test_invpar
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-invpar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-invpar.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-invpar.dir/link.d "CMakeFiles/test-invpar.dir/test_invpar.cxx.o" -o test_invpar  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 81%] Built target test-invpar
make  -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 81%] Building CXX object tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/test_laplace.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplace -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/test_laplace.cxx.o -MF CMakeFiles/test-laplace.dir/test_laplace.cxx.o.d -o CMakeFiles/test-laplace.dir/test_laplace.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplace/test_laplace.cxx
[ 81%] Linking CXX executable test_laplace
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplace.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-laplace.dir/link.d "CMakeFiles/test-laplace.dir/test_laplace.cxx.o" -o test_laplace  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 81%] Built target test-laplace
make  -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 81%] Building CXX object tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace-petsc3d && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplace-petsc3d -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o -MF CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o.d -o CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplace-petsc3d/test-laplace3d.cxx
[ 83%] Linking CXX executable test-laplace3d
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplace-petsc3d && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplace-petsc3d.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-laplace-petsc3d.dir/link.d "CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o" -o test-laplace3d  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 83%] Built target test-laplace-petsc3d
make  -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 83%] Building CXX object tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-fv && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexy-fv -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o -MF CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o.d -o CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexy-fv/test-laplacexy.cxx
[ 83%] Linking CXX executable test-laplacexy
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-fv && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexy-fv.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-laplacexy-fv.dir/link.d "CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o" -o test-laplacexy  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 83%] Built target test-laplacexy-fv
make  -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexy-short /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-short /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 83%] Building CXX object tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-short && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexy-short -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o -MF CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o.d -o CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexy-short/test-laplacexy.cxx
[ 85%] Linking CXX executable test-laplacexy
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexy-short && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexy-short.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-laplacexy-short.dir/link.d "CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o" -o test-laplacexy  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 85%] Built target test-laplacexy-short
make  -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexz /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexz /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 85%] Building CXX object tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexz && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexz -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o -MF CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o.d -o CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexz/test-laplacexz.cxx
[ 85%] Linking CXX executable test-laplacexz
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-laplacexz && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexz.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-laplacexz.dir/link.d "CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o" -o test-laplacexz  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 85%] Built target test-laplacexz
make  -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 85%] Building CXX object tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-multigrid_laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-multigrid_laplace -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o -MF CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o.d -o CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-multigrid_laplace/test_multigrid_laplace.cxx
[ 87%] Linking CXX executable test_multigrid_laplace
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-multigrid_laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-multigrid-laplace.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-multigrid-laplace.dir/link.d "CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o" -o test_multigrid_laplace  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 87%] Built target test-multigrid-laplace
make  -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-naulin-laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-naulin-laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 87%] Building CXX object tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-naulin-laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-naulin-laplace -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o -MF CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o.d -o CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-naulin-laplace/test_naulin_laplace.cxx
[ 87%] Linking CXX executable test_naulin_laplace
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-naulin-laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-naulin-laplace.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-naulin-laplace.dir/link.d "CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o" -o test_naulin_laplace  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 87%] Built target test-naulin-laplace
make  -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-options-netcdf /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-options-netcdf /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 87%] Building CXX object tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-options-netcdf && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-options-netcdf -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o -MF CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o.d -o CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-options-netcdf/test-options-netcdf.cxx
[ 89%] Linking CXX executable test-options-netcdf
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-options-netcdf && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-options-netcdf.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-options-netcdf.dir/link.d "CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o" -o test-options-netcdf  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 89%] Built target test-options-netcdf
make  -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-petsc_laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 89%] Building CXX object tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-petsc_laplace -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o -MF CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o.d -o CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-petsc_laplace/test_petsc_laplace.cxx
[ 89%] Linking CXX executable test_petsc_laplace
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-petsc-laplace.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-petsc-laplace.dir/link.d "CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o" -o test_petsc_laplace  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 89%] Built target test-petsc-laplace
make  -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 89%] Building CXX object tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-petsc_laplace_MAST-grid -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o -MF CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o.d -o CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-petsc_laplace_MAST-grid/test_petsc_laplace_MAST_grid.cxx
[ 89%] Linking CXX executable test_petsc_laplace_MAST_grid
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-petsc-laplace-MAST-grid.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-petsc-laplace-MAST-grid.dir/link.d "CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o" -o test_petsc_laplace_MAST_grid  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 89%] Built target test-petsc-laplace-MAST-grid
make  -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-restart-io /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restart-io /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 90%] Building CXX object tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restart-io && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-restart-io -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o -MF CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o.d -o CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-restart-io/test-restart-io.cxx
[ 90%] Linking CXX executable test-restart-io
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restart-io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-restart-io.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-restart-io.dir/link.d "CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o" -o test-restart-io  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 90%] Built target test-restart-io
make  -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-restarting /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restarting /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 90%] Building CXX object tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/test_restarting.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restarting && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-restarting -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/test_restarting.cxx.o -MF CMakeFiles/test-restarting.dir/test_restarting.cxx.o.d -o CMakeFiles/test-restarting.dir/test_restarting.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-restarting/test_restarting.cxx
[ 90%] Linking CXX executable test_restarting
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-restarting && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-restarting.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-restarting.dir/link.d "CMakeFiles/test-restarting.dir/test_restarting.cxx.o" -o test_restarting  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 90%] Built target test-restarting
make  -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-smooth /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-smooth /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 92%] Building CXX object tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/test_smooth.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-smooth && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-smooth -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/test_smooth.cxx.o -MF CMakeFiles/test-smooth.dir/test_smooth.cxx.o.d -o CMakeFiles/test-smooth.dir/test_smooth.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-smooth/test_smooth.cxx
[ 92%] Linking CXX executable test_smooth
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-smooth && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-smooth.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-smooth.dir/link.d "CMakeFiles/test-smooth.dir/test_smooth.cxx.o" -o test_smooth  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 92%] Built target test-smooth
make  -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-snb /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-snb /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-snb/CMakeFiles/test-snb.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 92%] Building CXX object tests/integrated/test-snb/CMakeFiles/test-snb.dir/test_snb.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-snb && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-snb -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-snb/CMakeFiles/test-snb.dir/test_snb.cxx.o -MF CMakeFiles/test-snb.dir/test_snb.cxx.o.d -o CMakeFiles/test-snb.dir/test_snb.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-snb/test_snb.cxx
[ 92%] Linking CXX executable test_snb
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-snb && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-snb.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-snb.dir/link.d "CMakeFiles/test-snb.dir/test_snb.cxx.o" -o test_snb  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 92%] Built target test-snb
make  -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-solver /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-solver /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-solver/CMakeFiles/test-solver.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 94%] Building CXX object tests/integrated/test-solver/CMakeFiles/test-solver.dir/test_solver.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-solver && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-solver -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-solver/CMakeFiles/test-solver.dir/test_solver.cxx.o -MF CMakeFiles/test-solver.dir/test_solver.cxx.o.d -o CMakeFiles/test-solver.dir/test_solver.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-solver/test_solver.cxx
[ 94%] Linking CXX executable test_solver
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-solver && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-solver.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-solver.dir/link.d "CMakeFiles/test-solver.dir/test_solver.cxx.o" -o test_solver  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 94%] Built target test-solver
make  -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-squash /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-squash /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-squash/CMakeFiles/test-squash.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 94%] Building CXX object tests/integrated/test-squash/CMakeFiles/test-squash.dir/squash.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-squash && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-squash -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-squash/CMakeFiles/test-squash.dir/squash.cxx.o -MF CMakeFiles/test-squash.dir/squash.cxx.o.d -o CMakeFiles/test-squash.dir/squash.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-squash/squash.cxx
[ 94%] Linking CXX executable squash
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-squash && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-squash.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-squash.dir/link.d "CMakeFiles/test-squash.dir/squash.cxx.o" -o squash  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 94%] Built target test-squash
make  -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-stopCheck /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 96%] Building CXX object tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-stopCheck -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o -MF CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o.d -o CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-stopCheck/test_stopCheck.cxx
[ 96%] Linking CXX executable test_stopCheck
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-stopCheck.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-stopCheck.dir/link.d "CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o" -o test_stopCheck  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 96%] Built target test-stopCheck
make  -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-stopCheck-file /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck-file /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 96%] Building CXX object tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck-file && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-stopCheck-file -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o -MF CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o.d -o CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-stopCheck-file/test_stopCheck.cxx
[ 96%] Linking CXX executable test_stopCheck
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-stopCheck-file && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-stopCheck-file.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-stopCheck-file.dir/link.d "CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o" -o test_stopCheck  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 96%] Built target test-stopCheck-file
make  -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-twistshift /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 96%] Building CXX object tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-twistshift -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o -MF CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o.d -o CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-twistshift/test-twistshift.cxx
[ 98%] Linking CXX executable test-twistshift
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-twistshift.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-twistshift.dir/link.d "CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o" -o test-twistshift  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 98%] Built target test-twistshift
make  -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 98%] Building CXX object tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift-staggered && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-twistshift-staggered -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o -MF CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o.d -o CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-twistshift-staggered/test-twistshift.cxx
[ 98%] Linking CXX executable test-twistshift
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-twistshift-staggered && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-twistshift-staggered.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-twistshift-staggered.dir/link.d "CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o" -o test-twistshift  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 98%] Built target test-twistshift-staggered
make  -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-vec /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-vec /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-vec/CMakeFiles/test-vec.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[ 98%] Building CXX object tests/integrated/test-vec/CMakeFiles/test-vec.dir/testVec.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-vec && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-vec -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-vec/CMakeFiles/test-vec.dir/testVec.cxx.o -MF CMakeFiles/test-vec.dir/testVec.cxx.o.d -o CMakeFiles/test-vec.dir/testVec.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-vec/testVec.cxx
[100%] Linking CXX executable testVec
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-vec && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-vec.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-vec.dir/link.d "CMakeFiles/test-vec.dir/testVec.cxx.o" -o testVec  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target test-vec
make  -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-yupdown /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Building CXX object tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-yupdown -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o -MF CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o.d -o CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-yupdown/test_yupdown.cxx
[100%] Linking CXX executable test_yupdown
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-yupdown && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-yupdown.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-yupdown.dir/link.d "CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o" -o test_yupdown  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_ida.so.7.1.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.1.1 /usr/lib64/openmpi/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target test-yupdown
make  -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles/build-check-integrated-tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make  -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
make[3]: Nothing to be done for 'CMakeFiles/build-check-integrated-tests.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
[100%] Built target build-check-integrated-tests
make[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/CMakeFiles 0
make[1]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi'
+ pushd tests/integrated/test-boutpp/simple-model
~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tests/integrated/test-boutpp/simple-model ~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi ~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f
+ cat
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
Function "MPI_Comm_rank" not defined.
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0x7fffcc47c6c0 (LWP 17292)]
[New Thread 0x7fffcbc7b6c0 (LWP 17293)]
[Thread 0x7fffcbc7b6c0 (LWP 17293) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f6fddd in BoutInitialise (argc=@0x7fffffffca60: 3, argv=@0x7fffffffca38: 0x555555686c90) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x00007ffff73ccbed in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 10 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 17289

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff70a1cbd in BoutMesh::load (this=0x555555cb9080) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x00007ffff6f7006d in BoutInitialise (argc=@0x7fffffffca60: 3, argv=@0x7fffffffca38: 0x555555686c90) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x00007ffff73ccbed in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff719351d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719378f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff7190701 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x555555685820, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718bd61 in bout::OptionsIOFactory::createOutput (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x00007ffff711c96d in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x00007ffff73bcf22 in PythonModel::PythonModel (this=0x555555cd3210) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d1eb0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d1eb0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e687 in __Pyx_PyObject_Call (func=0x7ffff74db3d0, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7ffff74db3d0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7ffff74db3d0, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be511 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d1eb0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option output:prefix = BOUT.dmp (user_default)
	Option output:path = mini (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff719351d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719378f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff7190701 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x555555685820, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718ba95 in bout::OptionsIOFactory::createRestart (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x00007ffff711ca65 in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x00007ffff73bcf22 in PythonModel::PythonModel (this=0x555555cd3210) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d1eb0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d1eb0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e687 in __Pyx_PyObject_Call (func=0x7ffff74db3d0, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7ffff74db3d0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7ffff74db3d0, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be511 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d1eb0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:path = mini (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff714fb54 in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x00007ffff712ddc0 in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba400) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba400) at /usr/include/c++/14/bits/std_function.h:291
#9  0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x555555685fc0, __args#0=0x555555cba400) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3210) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d1eb0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d1eb0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#16 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#17 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#18 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#29 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000555555555095 in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784d7d in sunLoggerIsOutputRank (logger=0x555555cdd150, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0x555555cb1930, output_rank=output_rank@entry=0, logger_ptr=logger_ptr@entry=0x7fffffffc5c0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x00007ffff47855a9 in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1930, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1930, sunctx_out=0x555555cdc940) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14a48, comm=0x555555cb1930) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba400) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba400) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x555555685fc0, __args#0=0x555555cba400) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3210) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d1eb0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d1eb0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784e79 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0x555555cdd150, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x00007ffff47855bd in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1930, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1930, sunctx_out=0x555555cdc940) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14a48, comm=0x555555cb1930) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba400) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba400) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x555555685fc0, __args#0=0x555555cba400) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3210) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d1eb0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d1eb0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784f59 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0x555555cdd150, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x00007ffff47855fc in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1930, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1930, sunctx_out=0x555555cdc940) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14a48, comm=0x555555cb1930) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba400) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba400) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x555555685fc0, __args#0=0x555555cba400) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3210) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d1eb0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d1eb0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478508c in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x00007ffff478560f in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1930, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1930, sunctx_out=0x555555cdc940) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14a48, comm=0x555555cb1930) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba400) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba400) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x555555685fc0, __args#0=0x555555cba400) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3210) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d1eb0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d1eb0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478502c in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x00007ffff4785622 in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1930, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1930, sunctx_out=0x555555cdc940) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14a48, comm=0x555555cb1930) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba400) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba400) at /usr/include/c++/14/bits/std_function.h:291
#12 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x555555685fc0, __args#0=0x555555cba400) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3210) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d1eb0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d1eb0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#19 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#20 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#21 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#32 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000555555555095 in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option stopCheckName = BOUT.stop (default)
	Option datadir = mini (Command line)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: bada06c2-2d04-4304-b1e6-b0121ce14e34

Run started at  : Tue Dec 10 12:23:17 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option optionfile = BOUT.inp (default)
	Option datadir = mini (Command line)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       1.27e-02     0.3    0.0    0.6  151.2  -52.1
1.000e-01        253       2.08e-02    15.6    0.0    0.0   55.2   29.2
2.000e-01        152       1.51e-02    12.8    0.0    0.0   51.6   35.6
3.000e-01        150       1.48e-02    12.5    0.0    0.0   52.4   35.1
4.000e-01        155       1.48e-02    13.1    0.0    0.0   52.3   34.6
5.000e-01        139       1.46e-02    11.9    0.0    0.0   53.4   34.7
6.000e-01        157       1.50e-02    13.3    0.0    0.0   52.8   33.8
7.000e-01        120       1.45e-02    10.5    0.0    0.0   54.6   34.9
8.000e-01        146       1.48e-02    12.6    0.0    0.0   53.0   34.4
9.000e-01        153       1.50e-02    13.1    0.0    0.0   52.8   34.1
1.000e+00        162       1.51e-02    13.3    0.0    0.0   52.6   34.0
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Tue Dec 10 12:23:17 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478549f in sunLoggerIsOutputRank (logger=0x555555cdd150, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x00007ffff4780e09 in SUNContext_Free (sunctx=0x555555cdc940) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x00007ffff712dcf6 in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/openmpi-x86_64/sundials/sundials_context.hpp:55
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x00007ffff712dd75 in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x00007ffff73c1300 in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x00007ffff73bc9da in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0x7ffff74d1eb0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54496
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0x7ffff74d1eb0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54450
#13 0x00007ffff73c2ca3 in __pyx_pf_9libboutpp_12PhysicsModel_10_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56539
#14 __pyx_pw_9libboutpp_12PhysicsModel_11_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56474
#15 0x00007ffff73c386e in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57562
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#17 0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#18 0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#22 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000555555555095 in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f70796 in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x00007ffff73c46e4 in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:58017
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#5  0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#10 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000555555555095 in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0x7fffcc47c6c0 (LWP 17292) exited]
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
Exception ignored in: 'libboutpp.PhysicsModelBase.__dealloc__'
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 17289) exited normally]
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Breakpoint 1 (MPI_Comm_rank) pending.
Function "MPI_Comm_rank" not defined.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0x7fffcc47c6c0 (LWP 17303)]
[New Thread 0x7fffcbc7b6c0 (LWP 17304)]
[Thread 0x7fffcbc7b6c0 (LWP 17304) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f6fddd in BoutInitialise (argc=@0x7fffffffca60: 3, argv=@0x7fffffffca38: 0x555555666e90) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x00007ffff73ccbed in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 10 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 17300

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff70a1cbd in BoutMesh::load (this=0x555555cb9090) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x00007ffff6f7006d in BoutInitialise (argc=@0x7fffffffca60: 3, argv=@0x7fffffffca38: 0x555555666e90) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x00007ffff73ccbed in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff719351d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719378f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff7190701 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x555555665a20, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718bd61 in bout::OptionsIOFactory::createOutput (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x00007ffff711c96d in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x00007ffff73bcf22 in PythonModel::PythonModel (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e687 in __Pyx_PyObject_Call (func=0x7fffcc8a3cd0, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffcc8a3cd0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffcc8a3cd0, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be511 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option output:prefix = BOUT.dmp (user_default)
	Option output:path = mini (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff719351d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719378f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff7190701 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x555555665a20, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718ba95 in bout::OptionsIOFactory::createRestart (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x00007ffff711ca65 in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x00007ffff73bcf22 in PythonModel::PythonModel (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e687 in __Pyx_PyObject_Call (func=0x7fffcc8a3cd0, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffcc8a3cd0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffcc8a3cd0, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be511 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:path = mini (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff714fb54 in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x00007ffff712ddc0 in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#9  0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#16 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#17 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#18 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#29 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000555555555095 in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784d7d in sunLoggerIsOutputRank (logger=0x555555cdd160, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0x555555cb1960, output_rank=output_rank@entry=0, logger_ptr=logger_ptr@entry=0x7fffffffc5c0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x00007ffff47855a9 in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784e79 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0x555555cdd160, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x00007ffff47855bd in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784f59 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0x555555cdd160, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x00007ffff47855fc in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478508c in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x00007ffff478560f in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478502c in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x00007ffff4785622 in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#12 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#19 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#20 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#21 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#32 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000555555555095 in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option stopCheckName = BOUT.stop (default)
	Option datadir = mini (Command line)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 6816d89c-8da8-4c43-b0f6-167eeff0cf33

Run started at  : Tue Dec 10 12:23:28 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option optionfile = BOUT.inp (default)
	Option datadir = mini (Command line)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       1.25e-02     0.1    0.0    0.6  151.8  -52.5
1.000e-01        253       2.07e-02    15.6    0.0    0.0   54.6   29.8
2.000e-01        152       1.55e-02    13.1    0.0    0.0   51.6   35.3
3.000e-01        150       1.50e-02    13.0    0.0    0.0   52.3   34.8
4.000e-01        155       1.51e-02    13.0    0.0    0.0   53.1   33.9
5.000e-01        139       1.49e-02    11.9    0.0    0.0   52.9   35.2
6.000e-01        157       1.52e-02    13.9    0.0    0.0   52.0   34.1
7.000e-01        120       1.44e-02    10.5    0.0    0.0   54.8   34.7
8.000e-01        146       1.50e-02    12.2    0.0    0.0   54.0   33.8
9.000e-01        153       1.49e-02    12.7    0.0    0.0   53.1   34.1
1.000e+00        162       1.51e-02    13.7    0.0    0.0   52.8   33.6
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Tue Dec 10 12:23:28 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478549f in sunLoggerIsOutputRank (logger=0x555555cdd160, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x00007ffff4780e09 in SUNContext_Free (sunctx=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x00007ffff712dcf6 in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/openmpi-x86_64/sundials/sundials_context.hpp:55
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x00007ffff712dd75 in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x00007ffff73c1300 in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x00007ffff73bc9da in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54496
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54450
#13 0x00007ffff73c2ca3 in __pyx_pf_9libboutpp_12PhysicsModel_10_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56539
#14 __pyx_pw_9libboutpp_12PhysicsModel_11_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56474
#15 0x00007ffff73c386e in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57562
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#17 0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#18 0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#22 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000555555555095 in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f70796 in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x00007ffff73c46e4 in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:58017
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#5  0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#10 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000555555555095 in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0x7fffcc47c6c0 (LWP 17303) exited]
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
Exception ignored in: 'libboutpp.PhysicsModelBase.__dealloc__'
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 17300) exited normally]
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
Function "MPI_Comm_rank" not defined.
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0x7fffcc47c6c0 (LWP 17314)]
[New Thread 0x7fffcbc7b6c0 (LWP 17315)]
[Thread 0x7fffcbc7b6c0 (LWP 17315) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f6fddd in BoutInitialise (argc=@0x7fffffffca60: 3, argv=@0x7fffffffca38: 0x555555666e90) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x00007ffff73ccbed in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 10 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 17311

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff70a1cbd in BoutMesh::load (this=0x555555cb9090) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x00007ffff6f7006d in BoutInitialise (argc=@0x7fffffffca60: 3, argv=@0x7fffffffca38: 0x555555666e90) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x00007ffff73ccbed in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff719351d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719378f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff7190701 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x555555665a20, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718bd61 in bout::OptionsIOFactory::createOutput (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x00007ffff711c96d in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x00007ffff73bcf22 in PythonModel::PythonModel (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e687 in __Pyx_PyObject_Call (func=0x7fffccd942b0, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffccd942b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffccd942b0, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be511 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option output:prefix = BOUT.dmp (user_default)
	Option output:path = mini (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff719351d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719378f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff7190701 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x555555665a20, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718ba95 in bout::OptionsIOFactory::createRestart (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x00007ffff711ca65 in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x00007ffff73bcf22 in PythonModel::PythonModel (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e687 in __Pyx_PyObject_Call (func=0x7fffccd942b0, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffccd942b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffccd942b0, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be511 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:path = mini (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff714fb54 in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x00007ffff712ddc0 in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#9  0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#16 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#17 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#18 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#29 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000555555555095 in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784d7d in sunLoggerIsOutputRank (logger=0x555555cdd160, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0x555555cb1960, output_rank=output_rank@entry=0, logger_ptr=logger_ptr@entry=0x7fffffffc5c0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x00007ffff47855a9 in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784e79 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0x555555cdd160, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x00007ffff47855bd in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784f59 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0x555555cdd160, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x00007ffff47855fc in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478508c in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x00007ffff478560f in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478502c in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x00007ffff4785622 in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#12 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#19 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#20 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#21 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#32 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000555555555095 in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option stopCheckName = BOUT.stop (default)
	Option datadir = mini (Command line)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 468696a9-41e3-4ec8-b633-749c9f3c13a0

Run started at  : Tue Dec 10 12:23:39 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option optionfile = BOUT.inp (default)
	Option datadir = mini (Command line)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       1.27e-02     0.1    0.0    0.7  152.3  -53.0
1.000e-01        253       2.04e-02    15.6    0.0    0.0   55.1   29.3
2.000e-01        152       1.51e-02    12.9    0.0    0.0   51.8   35.3
3.000e-01        150       1.48e-02    12.6    0.0    0.0   53.1   34.3
4.000e-01        155       1.48e-02    13.0    0.0    0.0   52.5   34.5
5.000e-01        139       1.45e-02    12.0    0.0    0.0   53.3   34.8
6.000e-01        157       1.49e-02    13.6    0.0    0.0   52.6   33.8
7.000e-01        120       1.43e-02    10.6    0.0    0.0   54.7   34.7
8.000e-01        146       1.47e-02    12.6    0.0    0.0   53.5   33.9
9.000e-01        153       1.50e-02    12.9    0.0    0.0   53.6   33.5
1.000e+00        162       1.49e-02    13.5    0.0    0.0   53.4   33.1
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Tue Dec 10 12:23:40 2024
Run time : 1 s

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478549f in sunLoggerIsOutputRank (logger=0x555555cdd160, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x00007ffff4780e09 in SUNContext_Free (sunctx=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x00007ffff712dcf6 in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/openmpi-x86_64/sundials/sundials_context.hpp:55
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x00007ffff712dd75 in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x00007ffff73c1300 in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x00007ffff73bc9da in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54496
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54450
#13 0x00007ffff73c2ca3 in __pyx_pf_9libboutpp_12PhysicsModel_10_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56539
#14 __pyx_pw_9libboutpp_12PhysicsModel_11_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56474
#15 0x00007ffff73c386e in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57562
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#17 0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#18 0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#22 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000555555555095 in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f70796 in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x00007ffff73c46e4 in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:58017
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#5  0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#10 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000555555555095 in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0x7fffcc47c6c0 (LWP 17314) exited]
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
Exception ignored in: 'libboutpp.PhysicsModelBase.__dealloc__'
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 17311) exited normally]
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
Function "MPI_Comm_rank" not defined.
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0x7fffcc47c6c0 (LWP 17325)]
[New Thread 0x7fffcbc7b6c0 (LWP 17326)]
[Thread 0x7fffcbc7b6c0 (LWP 17326) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f6fddd in BoutInitialise (argc=@0x7fffffffca60: 3, argv=@0x7fffffffca38: 0x555555666e90) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x00007ffff73ccbed in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 10 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 17322

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff70a1cbd in BoutMesh::load (this=0x555555cb9090) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x00007ffff6f7006d in BoutInitialise (argc=@0x7fffffffca60: 3, argv=@0x7fffffffca38: 0x555555666e90) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x00007ffff73ccbed in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff719351d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719378f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff7190701 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x555555665a20, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718bd61 in bout::OptionsIOFactory::createOutput (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x00007ffff711c96d in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x00007ffff73bcf22 in PythonModel::PythonModel (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e687 in __Pyx_PyObject_Call (func=0x7fffccd942b0, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffccd942b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffccd942b0, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be511 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option output:prefix = BOUT.dmp (user_default)
	Option output:path = mini (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff719351d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719378f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff7190701 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x555555665a20, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718ba95 in bout::OptionsIOFactory::createRestart (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x00007ffff711ca65 in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x00007ffff73bcf22 in PythonModel::PythonModel (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e687 in __Pyx_PyObject_Call (func=0x7fffccd942b0, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffccd942b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffccd942b0, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be511 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:path = mini (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff714fb54 in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x00007ffff712ddc0 in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#9  0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#16 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#17 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#18 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#29 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000555555555095 in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784d7d in sunLoggerIsOutputRank (logger=0x555555cdd160, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0x555555cb1960, output_rank=output_rank@entry=0, logger_ptr=logger_ptr@entry=0x7fffffffc5c0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x00007ffff47855a9 in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784e79 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0x555555cdd160, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x00007ffff47855bd in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784f59 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0x555555cdd160, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x00007ffff47855fc in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478508c in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x00007ffff478560f in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478502c in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x00007ffff4785622 in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#12 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#19 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#20 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#21 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#32 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000555555555095 in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option stopCheckName = BOUT.stop (default)
	Option datadir = mini (Command line)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: aa5d9f25-5d0e-4b27-8f0d-9c3a87879dda

Run started at  : Tue Dec 10 12:23:51 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option optionfile = BOUT.inp (default)
	Option datadir = mini (Command line)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       1.25e-02     0.1    0.0    0.6  153.1  -53.7
1.000e-01        253       2.07e-02    15.9    0.0    0.0   54.5   29.6
2.000e-01        152       1.52e-02    12.5    0.0    0.0   52.0   35.5
3.000e-01        150       1.50e-02    13.1    0.0    0.0   52.2   34.7
4.000e-01        155       1.48e-02    13.3    0.0    0.0   52.4   34.3
5.000e-01        139       1.48e-02    12.1    0.0    0.0   53.3   34.6
6.000e-01        157       1.50e-02    13.2    0.0    0.0   52.4   34.4
7.000e-01        120       1.45e-02    10.9    0.0    0.0   53.9   35.2
8.000e-01        146       1.50e-02    12.5    0.0    0.0   52.7   34.8
9.000e-01        153       1.49e-02    12.8    0.0    0.0   53.0   34.2
1.000e+00        162       1.51e-02    13.9    0.0    0.0   52.0   34.1
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Tue Dec 10 12:23:51 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478549f in sunLoggerIsOutputRank (logger=0x555555cdd160, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x00007ffff4780e09 in SUNContext_Free (sunctx=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x00007ffff712dcf6 in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/openmpi-x86_64/sundials/sundials_context.hpp:55
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x00007ffff712dd75 in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x00007ffff73c1300 in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x00007ffff73bc9da in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54496
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54450
#13 0x00007ffff73c2ca3 in __pyx_pf_9libboutpp_12PhysicsModel_10_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56539
#14 __pyx_pw_9libboutpp_12PhysicsModel_11_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56474
#15 0x00007ffff73c386e in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57562
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#17 0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#18 0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#22 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000555555555095 in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f70796 in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x00007ffff73c46e4 in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:58017
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#5  0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#10 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000555555555095 in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0x7fffcc47c6c0 (LWP 17325) exited]
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
Exception ignored in: 'libboutpp.PhysicsModelBase.__dealloc__'
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 17322) exited normally]
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
Function "MPI_Comm_rank" not defined.
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0x7fffcc47c6c0 (LWP 17336)]
[New Thread 0x7fffcbc7b6c0 (LWP 17337)]
[Thread 0x7fffcbc7b6c0 (LWP 17337) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f6fddd in BoutInitialise (argc=@0x7fffffffca60: 3, argv=@0x7fffffffca38: 0x555555666e90) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x00007ffff73ccbed in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 10 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 17333

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff70a1cbd in BoutMesh::load (this=0x555555cb9090) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x00007ffff6f7006d in BoutInitialise (argc=@0x7fffffffca60: 3, argv=@0x7fffffffca38: 0x555555666e90) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x00007ffff73ccbed in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff719351d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719378f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff7190701 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x555555665a20, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718bd61 in bout::OptionsIOFactory::createOutput (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x00007ffff711c96d in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x00007ffff73bcf22 in PythonModel::PythonModel (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e687 in __Pyx_PyObject_Call (func=0x7ffff75122c0, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7ffff75122c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7ffff75122c0, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be511 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option output:prefix = BOUT.dmp (user_default)
	Option output:path = mini (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff719351d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719378f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff7190701 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x555555665a20, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718ba95 in bout::OptionsIOFactory::createRestart (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x00007ffff711ca65 in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x00007ffff73bcf22 in PythonModel::PythonModel (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e687 in __Pyx_PyObject_Call (func=0x7ffff75122c0, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7ffff75122c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7ffff75122c0, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be511 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:path = mini (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff714fb54 in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x00007ffff712ddc0 in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#9  0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#16 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#17 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#18 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#29 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000555555555095 in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784d7d in sunLoggerIsOutputRank (logger=0x555555cdd160, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0x555555cb1960, output_rank=output_rank@entry=0, logger_ptr=logger_ptr@entry=0x7fffffffc5c0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x00007ffff47855a9 in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784e79 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0x555555cdd160, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x00007ffff47855bd in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784f59 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0x555555cdd160, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x00007ffff47855fc in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478508c in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x00007ffff478560f in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478502c in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x00007ffff4785622 in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#12 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#19 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#20 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#21 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#32 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000555555555095 in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option stopCheckName = BOUT.stop (default)
	Option datadir = mini (Command line)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: ab809720-d3a0-4e9b-aea4-ed70da5310f3

Run started at  : Tue Dec 10 12:24:02 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option optionfile = BOUT.inp (default)
	Option datadir = mini (Command line)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       1.23e-02     0.1    0.0    0.5  152.7  -53.3
1.000e-01        253       2.10e-02    15.7    0.0    0.0   54.4   29.9
2.000e-01        152       1.53e-02    12.7    0.0    0.0   52.2   35.1
3.000e-01        150       1.53e-02    12.8    0.0    0.0   52.9   34.4
4.000e-01        155       1.53e-02    13.0    0.0    0.0   52.6   34.4
5.000e-01        139       1.50e-02    12.4    0.0    0.0   53.1   34.6
6.000e-01        157       1.54e-02    13.5    0.0    0.0   52.4   34.1
7.000e-01        120       1.49e-02    10.7    0.0    0.0   53.8   35.5
8.000e-01        146       1.51e-02    12.1    0.0    0.0   53.2   34.6
9.000e-01        153       1.51e-02    12.6    0.0    0.0   52.9   34.5
1.000e+00        162       1.51e-02    14.1    0.0    0.0   52.2   33.6
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Tue Dec 10 12:24:02 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478549f in sunLoggerIsOutputRank (logger=0x555555cdd160, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x00007ffff4780e09 in SUNContext_Free (sunctx=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x00007ffff712dcf6 in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/openmpi-x86_64/sundials/sundials_context.hpp:55
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x00007ffff712dd75 in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x00007ffff73c1300 in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x00007ffff73bc9da in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54496
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54450
#13 0x00007ffff73c2ca3 in __pyx_pf_9libboutpp_12PhysicsModel_10_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56539
#14 __pyx_pw_9libboutpp_12PhysicsModel_11_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56474
#15 0x00007ffff73c386e in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57562
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#17 0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#18 0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#22 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000555555555095 in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f70796 in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x00007ffff73c46e4 in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:58017
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#5  0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#10 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000555555555095 in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0x7fffcc47c6c0 (LWP 17336) exited]
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
Exception ignored in: 'libboutpp.PhysicsModelBase.__dealloc__'
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 17333) exited normally]
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
Function "MPI_Comm_rank" not defined.
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0x7fffcc47c6c0 (LWP 17347)]
[New Thread 0x7fffcbc7b6c0 (LWP 17348)]
[Thread 0x7fffcbc7b6c0 (LWP 17348) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f6fddd in BoutInitialise (argc=@0x7fffffffca60: 3, argv=@0x7fffffffca38: 0x555555666e90) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x00007ffff73ccbed in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 10 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 17344

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff70a1cbd in BoutMesh::load (this=0x555555cb9090) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x00007ffff6f7006d in BoutInitialise (argc=@0x7fffffffca60: 3, argv=@0x7fffffffca38: 0x555555666e90) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x00007ffff73ccbed in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff719351d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719378f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff7190701 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x555555665a20, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718bd61 in bout::OptionsIOFactory::createOutput (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x00007ffff711c96d in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x00007ffff73bcf22 in PythonModel::PythonModel (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e687 in __Pyx_PyObject_Call (func=0x7fffccd942b0, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffccd942b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffccd942b0, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be511 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option output:prefix = BOUT.dmp (user_default)
	Option output:path = mini (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff719351d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719378f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff7190701 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x555555665a20, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718ba95 in bout::OptionsIOFactory::createRestart (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x00007ffff711ca65 in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x00007ffff73bcf22 in PythonModel::PythonModel (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e687 in __Pyx_PyObject_Call (func=0x7fffccd942b0, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffccd942b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffccd942b0, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be511 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:path = mini (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff714fb54 in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x00007ffff712ddc0 in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#9  0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#16 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#17 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#18 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#29 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000555555555095 in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784d7d in sunLoggerIsOutputRank (logger=0x555555cdd160, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0x555555cb1960, output_rank=output_rank@entry=0, logger_ptr=logger_ptr@entry=0x7fffffffc5c0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x00007ffff47855a9 in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784e79 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0x555555cdd160, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x00007ffff47855bd in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784f59 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0x555555cdd160, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x00007ffff47855fc in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478508c in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x00007ffff478560f in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478502c in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x00007ffff4785622 in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#12 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#19 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#20 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#21 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#32 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000555555555095 in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option stopCheckName = BOUT.stop (default)
	Option datadir = mini (Command line)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: c64e13f8-cbe5-46a8-b15b-8f70bd6fa3ba

Run started at  : Tue Dec 10 12:24:14 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option optionfile = BOUT.inp (default)
	Option datadir = mini (Command line)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       1.24e-02     0.1    0.0    0.6  152.7  -53.5
1.000e-01        253       2.05e-02    15.8    0.0    0.0   54.4   29.9
2.000e-01        152       1.51e-02    12.9    0.0    0.0   52.0   35.1
3.000e-01        150       1.49e-02    12.7    0.0    0.0   52.6   34.8
4.000e-01        155       1.49e-02    13.2    0.0    0.0   52.7   34.2
5.000e-01        139       1.45e-02    12.2    0.0    0.0   53.3   34.6
6.000e-01        157       1.49e-02    13.2    0.0    0.0   52.8   34.1
7.000e-01        120       1.42e-02    10.3    0.0    0.0   54.5   35.1
8.000e-01        146       1.46e-02    12.6    0.0    0.0   53.1   34.2
9.000e-01        153       1.47e-02    12.9    0.0    0.0   52.8   34.3
1.000e+00        162       1.48e-02    13.7    0.0    0.0   53.2   33.1
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Tue Dec 10 12:24:14 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478549f in sunLoggerIsOutputRank (logger=0x555555cdd160, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x00007ffff4780e09 in SUNContext_Free (sunctx=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x00007ffff712dcf6 in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/openmpi-x86_64/sundials/sundials_context.hpp:55
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x00007ffff712dd75 in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x00007ffff73c1300 in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x00007ffff73bc9da in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54496
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54450
#13 0x00007ffff73c2ca3 in __pyx_pf_9libboutpp_12PhysicsModel_10_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56539
#14 __pyx_pw_9libboutpp_12PhysicsModel_11_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56474
#15 0x00007ffff73c386e in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57562
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#17 0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#18 0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#22 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000555555555095 in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f70796 in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x00007ffff73c46e4 in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:58017
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#5  0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#10 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000555555555095 in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0x7fffcc47c6c0 (LWP 17347) exited]
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
Exception ignored in: 'libboutpp.PhysicsModelBase.__dealloc__'
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 17344) exited normally]
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
Function "MPI_Comm_rank" not defined.
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0x7fffcc47c6c0 (LWP 17358)]
[New Thread 0x7fffcbc7b6c0 (LWP 17359)]
[Thread 0x7fffcbc7b6c0 (LWP 17359) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f6fddd in BoutInitialise (argc=@0x7fffffffca60: 3, argv=@0x7fffffffca38: 0x555555666e90) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x00007ffff73ccbed in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 10 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 17355

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff70a1cbd in BoutMesh::load (this=0x555555cb9090) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x00007ffff6f7006d in BoutInitialise (argc=@0x7fffffffca60: 3, argv=@0x7fffffffca38: 0x555555666e90) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x00007ffff73ccbed in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff719351d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719378f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff7190701 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x555555665a20, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718bd61 in bout::OptionsIOFactory::createOutput (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x00007ffff711c96d in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x00007ffff73bcf22 in PythonModel::PythonModel (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e687 in __Pyx_PyObject_Call (func=0x7fffccd942b0, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffccd942b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffccd942b0, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be511 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option output:prefix = BOUT.dmp (user_default)
	Option output:path = mini (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff719351d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719378f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff7190701 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x555555665a20, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718ba95 in bout::OptionsIOFactory::createRestart (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x00007ffff711ca65 in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x00007ffff73bcf22 in PythonModel::PythonModel (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e687 in __Pyx_PyObject_Call (func=0x7fffccd942b0, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffccd942b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffccd942b0, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be511 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:path = mini (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff714fb54 in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x00007ffff712ddc0 in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#9  0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#16 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#17 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#18 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#29 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000555555555095 in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784d7d in sunLoggerIsOutputRank (logger=0x555555cdd160, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0x555555cb1960, output_rank=output_rank@entry=0, logger_ptr=logger_ptr@entry=0x7fffffffc5c0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x00007ffff47855a9 in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784e79 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0x555555cdd160, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x00007ffff47855bd in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784f59 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0x555555cdd160, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x00007ffff47855fc in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478508c in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x00007ffff478560f in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478502c in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x00007ffff4785622 in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#12 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#19 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#20 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#21 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#32 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000555555555095 in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option stopCheckName = BOUT.stop (default)
	Option datadir = mini (Command line)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 860bec79-cccf-4624-b047-b7d9cff963c9

Run started at  : Tue Dec 10 12:24:25 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option optionfile = BOUT.inp (default)
	Option datadir = mini (Command line)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       1.25e-02     0.2    0.0    0.6  156.2  -56.9
1.000e-01        253       2.04e-02    15.7    0.0    0.0   54.8   29.6
2.000e-01        152       1.50e-02    12.9    0.0    0.0   51.9   35.1
3.000e-01        150       1.49e-02    12.8    0.0    0.0   52.5   34.7
4.000e-01        155       1.48e-02    12.8    0.0    0.0   52.8   34.4
5.000e-01        139       1.48e-02    11.9    0.0    0.0   53.7   34.4
6.000e-01        157       1.49e-02    13.3    0.0    0.0   52.6   34.1
7.000e-01        120       1.44e-02    10.5    0.0    0.0   54.8   34.8
8.000e-01        146       1.48e-02    12.5    0.0    0.0   52.8   34.6
9.000e-01        153       1.49e-02    13.1    0.0    0.0   52.9   34.0
1.000e+00        162       1.50e-02    13.6    0.0    0.0   52.7   33.7
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Tue Dec 10 12:24:25 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478549f in sunLoggerIsOutputRank (logger=0x555555cdd160, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x00007ffff4780e09 in SUNContext_Free (sunctx=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x00007ffff712dcf6 in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/openmpi-x86_64/sundials/sundials_context.hpp:55
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x00007ffff712dd75 in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x00007ffff73c1300 in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x00007ffff73bc9da in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54496
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54450
#13 0x00007ffff73c2ca3 in __pyx_pf_9libboutpp_12PhysicsModel_10_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56539
#14 __pyx_pw_9libboutpp_12PhysicsModel_11_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56474
#15 0x00007ffff73c386e in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57562
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#17 0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#18 0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#22 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000555555555095 in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f70796 in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x00007ffff73c46e4 in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:58017
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#5  0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#10 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000555555555095 in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0x7fffcc47c6c0 (LWP 17358) exited]
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
Exception ignored in: 'libboutpp.PhysicsModelBase.__dealloc__'
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 17355) exited normally]
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
Function "MPI_Comm_rank" not defined.
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0x7fffcc47c6c0 (LWP 17369)]
[New Thread 0x7fffcbc7b6c0 (LWP 17370)]
[Thread 0x7fffcbc7b6c0 (LWP 17370) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f6fddd in BoutInitialise (argc=@0x7fffffffca60: 3, argv=@0x7fffffffca38: 0x555555666e90) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x00007ffff73ccbed in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 10 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 17366

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff70a1cbd in BoutMesh::load (this=0x555555cb9090) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x00007ffff6f7006d in BoutInitialise (argc=@0x7fffffffca60: 3, argv=@0x7fffffffca38: 0x555555666e90) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x00007ffff73ccbed in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff719351d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719378f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff7190701 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x555555665a20, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718bd61 in bout::OptionsIOFactory::createOutput (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x00007ffff711c96d in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x00007ffff73bcf22 in PythonModel::PythonModel (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e687 in __Pyx_PyObject_Call (func=0x7fffcc8a3fd0, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffcc8a3fd0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffcc8a3fd0, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be511 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option output:prefix = BOUT.dmp (user_default)
	Option output:path = mini (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff719351d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719378f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff7190701 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x555555665a20, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718ba95 in bout::OptionsIOFactory::createRestart (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x00007ffff711ca65 in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x00007ffff73bcf22 in PythonModel::PythonModel (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e687 in __Pyx_PyObject_Call (func=0x7fffcc8a3fd0, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffcc8a3fd0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffcc8a3fd0, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be511 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:path = mini (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff714fb54 in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x00007ffff712ddc0 in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#9  0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#16 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#17 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#18 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#29 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000555555555095 in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784d7d in sunLoggerIsOutputRank (logger=0x555555cdd160, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0x555555cb1960, output_rank=output_rank@entry=0, logger_ptr=logger_ptr@entry=0x7fffffffc5c0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x00007ffff47855a9 in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784e79 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0x555555cdd160, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x00007ffff47855bd in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784f59 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0x555555cdd160, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x00007ffff47855fc in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478508c in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x00007ffff478560f in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478502c in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x00007ffff4785622 in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#12 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#19 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#20 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#21 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#32 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000555555555095 in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option stopCheckName = BOUT.stop (default)
	Option datadir = mini (Command line)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 7c733605-2f9b-4e5d-86ed-614a1e713dcd

Run started at  : Tue Dec 10 12:24:36 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option optionfile = BOUT.inp (default)
	Option datadir = mini (Command line)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       1.26e-02     0.1    0.0    0.6  151.7  -52.4
1.000e-01        253       2.05e-02    15.9    0.0    0.0   54.3   29.7
2.000e-01        152       1.49e-02    12.9    0.0    0.0   51.4   35.7
3.000e-01        150       1.48e-02    13.1    0.0    0.0   53.1   33.9
4.000e-01        155       1.47e-02    13.5    0.0    0.0   52.3   34.2
5.000e-01        139       1.46e-02    11.9    0.0    0.0   53.7   34.4
6.000e-01        157       1.50e-02    13.6    0.0    0.0   52.3   34.1
7.000e-01        120       1.41e-02    10.8    0.0    0.0   54.6   34.6
8.000e-01        146       1.46e-02    12.4    0.0    0.0   53.6   34.0
9.000e-01        153       1.47e-02    13.1    0.0    0.0   52.8   34.1
1.000e+00        162       1.49e-02    14.2    0.0    0.0   52.6   33.3
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Tue Dec 10 12:24:36 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478549f in sunLoggerIsOutputRank (logger=0x555555cdd160, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x00007ffff4780e09 in SUNContext_Free (sunctx=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x00007ffff712dcf6 in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/openmpi-x86_64/sundials/sundials_context.hpp:55
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x00007ffff712dd75 in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x00007ffff73c1300 in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x00007ffff73bc9da in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54496
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54450
#13 0x00007ffff73c2ca3 in __pyx_pf_9libboutpp_12PhysicsModel_10_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56539
#14 __pyx_pw_9libboutpp_12PhysicsModel_11_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56474
#15 0x00007ffff73c386e in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57562
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#17 0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#18 0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#22 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000555555555095 in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f70796 in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x00007ffff73c46e4 in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:58017
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#5  0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#10 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000555555555095 in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0x7fffcc47c6c0 (LWP 17369) exited]
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
Exception ignored in: 'libboutpp.PhysicsModelBase.__dealloc__'
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 17366) exited normally]
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
Function "MPI_Comm_rank" not defined.
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0x7fffcc47c6c0 (LWP 17380)]
[New Thread 0x7fffcbc7b6c0 (LWP 17381)]
[Thread 0x7fffcbc7b6c0 (LWP 17381) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f6fddd in BoutInitialise (argc=@0x7fffffffca60: 3, argv=@0x7fffffffca38: 0x555555666e90) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x00007ffff73ccbed in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 10 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 17377

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff70a1cbd in BoutMesh::load (this=0x555555cb9090) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x00007ffff6f7006d in BoutInitialise (argc=@0x7fffffffca60: 3, argv=@0x7fffffffca38: 0x555555666e90) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x00007ffff73ccbed in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff719351d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719378f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff7190701 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x555555665a20, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718bd61 in bout::OptionsIOFactory::createOutput (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x00007ffff711c96d in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x00007ffff73bcf22 in PythonModel::PythonModel (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e687 in __Pyx_PyObject_Call (func=0x7fffccd942b0, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffccd942b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffccd942b0, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be511 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option output:prefix = BOUT.dmp (user_default)
	Option output:path = mini (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff719351d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719378f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff7190701 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x555555665a20, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718ba95 in bout::OptionsIOFactory::createRestart (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x00007ffff711ca65 in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x00007ffff73bcf22 in PythonModel::PythonModel (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e687 in __Pyx_PyObject_Call (func=0x7fffccd942b0, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffccd942b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffccd942b0, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be511 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:path = mini (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff714fb54 in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x00007ffff712ddc0 in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#9  0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#16 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#17 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#18 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#29 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000555555555095 in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784d7d in sunLoggerIsOutputRank (logger=0x555555cdd160, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0x555555cb1960, output_rank=output_rank@entry=0, logger_ptr=logger_ptr@entry=0x7fffffffc5c0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x00007ffff47855a9 in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784e79 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0x555555cdd160, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x00007ffff47855bd in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784f59 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0x555555cdd160, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x00007ffff47855fc in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478508c in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x00007ffff478560f in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478502c in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x00007ffff4785622 in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#12 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#19 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#20 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#21 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#32 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000555555555095 in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option stopCheckName = BOUT.stop (default)
	Option datadir = mini (Command line)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: b0750e2d-c4a9-4108-855a-16bdfd19e755

Run started at  : Tue Dec 10 12:24:48 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option optionfile = BOUT.inp (default)
	Option datadir = mini (Command line)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       1.26e-02     0.2    0.0    0.7  151.4  -52.2
1.000e-01        253       2.07e-02    15.7    0.0    0.0   54.9   29.4
2.000e-01        152       1.54e-02    12.7    0.0    0.0   52.3   35.0
3.000e-01        150       1.51e-02    12.6    0.0    0.0   52.7   34.7
4.000e-01        155       1.49e-02    13.2    0.0    0.0   52.4   34.4
5.000e-01        139       1.47e-02    12.0    0.0    0.0   53.8   34.3
6.000e-01        157       1.49e-02    13.4    0.0    0.0   52.6   34.0
7.000e-01        120       1.44e-02    10.3    0.0    0.0   54.4   35.3
8.000e-01        146       1.48e-02    12.6    0.0    0.0   53.6   33.9
9.000e-01        153       1.50e-02    12.8    0.0    0.0   53.4   33.8
1.000e+00        162       1.50e-02    13.2    0.0    0.0   53.3   33.5
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Tue Dec 10 12:24:48 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478549f in sunLoggerIsOutputRank (logger=0x555555cdd160, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x00007ffff4780e09 in SUNContext_Free (sunctx=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x00007ffff712dcf6 in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/openmpi-x86_64/sundials/sundials_context.hpp:55
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x00007ffff712dd75 in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x00007ffff73c1300 in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x00007ffff73bc9da in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54496
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54450
#13 0x00007ffff73c2ca3 in __pyx_pf_9libboutpp_12PhysicsModel_10_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56539
#14 __pyx_pw_9libboutpp_12PhysicsModel_11_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56474
#15 0x00007ffff73c386e in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57562
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#17 0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#18 0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#22 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000555555555095 in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f70796 in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x00007ffff73c46e4 in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:58017
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#5  0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#10 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000555555555095 in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0x7fffcc47c6c0 (LWP 17380) exited]
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
Exception ignored in: 'libboutpp.PhysicsModelBase.__dealloc__'
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 17377) exited normally]
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Breakpoint 1 (MPI_Comm_rank) pending.
Function "MPI_Comm_rank" not defined.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0x7fffcc47c6c0 (LWP 17391)]
[New Thread 0x7fffcbc7b6c0 (LWP 17392)]
[Thread 0x7fffcbc7b6c0 (LWP 17392) exited]

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f6fddd in BoutInitialise (argc=@0x7fffffffca60: 3, argv=@0x7fffffffca38: 0x555555666e90) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x00007ffff73ccbed in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 10 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 17388

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff70a1cbd in BoutMesh::load (this=0x555555cb9090) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x00007ffff6f7006d in BoutInitialise (argc=@0x7fffffffca60: 3, argv=@0x7fffffffca38: 0x555555666e90) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x00007ffff73ccbed in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff719351d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719378f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff7190701 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x555555665a20, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718bd61 in bout::OptionsIOFactory::createOutput (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x00007ffff711c96d in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x00007ffff73bcf22 in PythonModel::PythonModel (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e687 in __Pyx_PyObject_Call (func=0x7fffcc9abb20, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffcc9abb20) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffcc9abb20, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be511 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option output:prefix = BOUT.dmp (user_default)
	Option output:path = mini (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff719351d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719378f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff7190701 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x555555665a20, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718ba95 in bout::OptionsIOFactory::createRestart (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x00007ffff711ca65 in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x00007ffff73bcf22 in PythonModel::PythonModel (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e687 in __Pyx_PyObject_Call (func=0x7fffcc9abb20, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffcc9abb20) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffcc9abb20, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be511 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:path = mini (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff714fb54 in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x00007ffff712ddc0 in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#9  0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#16 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#17 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#18 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#29 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000555555555095 in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784d7d in sunLoggerIsOutputRank (logger=0x555555cdd160, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=0x555555cb1960, output_rank=output_rank@entry=0, logger_ptr=logger_ptr@entry=0x7fffffffc5c0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:155
#3  0x00007ffff47855a9 in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:178
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784e79 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0x555555cdd160, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:205
#3  0x00007ffff47855bd in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:185
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff4784f59 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0x555555cdd160, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:236
#3  0x00007ffff47855fc in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:187
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478508c in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:296
#3  0x00007ffff478560f in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:189
#4  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478502c in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:262
#2  0x00007ffff4785622 in SUNLogger_CreateFromEnv (comm=comm@entry=0x555555cb1960, logger_out=logger_out@entry=0x7fffffffc618) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:191
#3  0x00007ffff4780ac4 in SUNContext_Create (comm=0x555555cb1960, sunctx_out=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:58
#4  0x00007ffff712e483 in sundials::Context::Context (this=0x555555c14ae8, comm=0x555555cb1960) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x00007ffff713cb80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc830: 0x555555cba410) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc830: 0x555555cba410) at /usr/include/c++/14/bits/std_function.h:291
#12 0x00007ffff71ca6d0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x5555556661c0, __args#0=0x555555cba410) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x00007ffff715b50e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x00007ffff73bf9a6 in PythonModel::pyinit (this=0x555555cd3220) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#19 0x00007ffff73bed24 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#20 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#21 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#32 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000555555555095 in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option stopCheckName = BOUT.stop (default)
	Option datadir = mini (Command line)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 5957b457-991a-429b-9d67-f44300bfaa4e

Run started at  : Tue Dec 10 12:24:59 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option optionfile = BOUT.inp (default)
	Option datadir = mini (Command line)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       1.24e-02     0.0    0.0    0.6  152.5  -53.1
1.000e-01        253       2.05e-02    15.5    0.0    0.0   54.7   29.8
2.000e-01        152       1.52e-02    12.5    0.0    0.0   51.9   35.5
3.000e-01        150       1.49e-02    12.7    0.0    0.0   52.5   34.8
4.000e-01        155       1.49e-02    12.9    0.0    0.0   52.4   34.7
5.000e-01        139       1.45e-02    12.4    0.0    0.0   53.0   34.7
6.000e-01        157       1.48e-02    13.3    0.0    0.0   52.7   34.0
7.000e-01        120       1.43e-02    10.6    0.0    0.0   54.6   34.8
8.000e-01        146       1.47e-02    12.4    0.0    0.0   52.9   34.7
9.000e-01        153       1.49e-02    13.0    0.0    0.0   52.9   34.1
1.000e+00        162       1.51e-02    14.0    0.0    0.0   52.1   34.0
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Tue Dec 10 12:24:59 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff478549f in sunLoggerIsOutputRank (logger=0x555555cdd160, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_logger.c:460
#3  0x00007ffff4780e09 in SUNContext_Free (sunctx=0x555555cdc950) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildopenmpi_dir/src/sundials/sundials_context.c:290
#4  0x00007ffff712dcf6 in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/openmpi-x86_64/sundials/sundials_context.hpp:55
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x00007ffff712dd75 in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x00007ffff73c1300 in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/helper.h:123
#11 0x00007ffff73bc9da in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54496
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:54450
#13 0x00007ffff73c2ca3 in __pyx_pf_9libboutpp_12PhysicsModel_10_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56539
#14 __pyx_pw_9libboutpp_12PhysicsModel_11_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56474
#15 0x00007ffff73c386e in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57562
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#17 0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#18 0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#22 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000555555555095 in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#0  0x00007ffff4463180 in PMPI_Comm_rank () from /usr/lib64/openmpi/lib/libmpi.so.40
#1  0x00007ffff716235c in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f70796 in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x00007ffff73c46e4 in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:58017
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#5  0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#10 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000555555555095 in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0x7fffcc47c6c0 (LWP 17391) exited]
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
Exception ignored in: 'libboutpp.PhysicsModelBase.__dealloc__'
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 17388) exited normally]
+ popd
+ popd
~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_openmpi ~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f
~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f
+ '[' openmpi = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/openmpi/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/openmpi-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/openmpi-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64
+ eval 'unset MPI_COMPILER;
unset LD_LIBRARY_PATH;
unset MPI_MAN;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset _LMFILES_;
unset LOADEDMODULES;
unset CMAKE_PREFIX_PATH;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_HOME;
unset MPI_FORTRAN_MOD_DIR;
unset __MODULES_LMALTNAME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SUFFIX;
unset MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_LIB;
PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset MPI_COMPILER
++ unset LD_LIBRARY_PATH
++ unset MPI_MAN
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset _LMFILES_
++ unset LOADEDMODULES
++ unset CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_HOME
++ unset MPI_FORTRAN_MOD_DIR
++ unset __MODULES_LMALTNAME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SUFFIX
++ unset MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_LIB
++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ for mpi in openmpi mpich
+ fail=1
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ LOADEDMODULES=
++++ export LOADEDMODULES
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/mpich-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/mpich-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64
+ eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH;
MPI_COMPILER=mpich-x86_64; export MPI_COMPILER;
MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE;
MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN;
MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH;
_LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_;
LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES;
PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/mpich; export MPI_PYTHON3_SITEARCH;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR;
MPI_HOME=/usr/lib64/mpich; export MPI_HOME;
__MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG;
MPI_SUFFIX=_mpich; export MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH;
MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB;
PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN;
test 0;'
++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib
~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich ~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f
++ export LD_LIBRARY_PATH
++ MPI_COMPILER=mpich-x86_64
++ export MPI_COMPILER
++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/mpich-x86_64
++ export MPI_INCLUDE
++ MPI_MAN=/usr/share/man/mpich-x86_64
++ export MPI_MAN
++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON_SITEARCH
++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64
++ export _LMFILES_
++ LOADEDMODULES=mpi/mpich-x86_64
++ export LOADEDMODULES
++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/mpich
++ export MPI_PYTHON3_SITEARCH
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich
++ export MPI_FORTRAN_MOD_DIR
++ MPI_HOME=/usr/lib64/mpich
++ export MPI_HOME
++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SYSCONFIG=/etc/mpich-x86_64
++ export MPI_SYSCONFIG
++ MPI_SUFFIX=_mpich
++ export MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON2_SITEARCH
++ MPI_LIB=/usr/lib64/mpich/lib
++ export MPI_LIB
++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/mpich/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ pushd build_mpich
+ export OMPI_MCA_rmaps_base_oversubscribe=yes
+ OMPI_MCA_rmaps_base_oversubscribe=yes
+ export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ export HDF5_USE_FILE_LOCKING=FALSE
+ HDF5_USE_FILE_LOCKING=FALSE
+ sed 's/ 3s / 30s /' -i tests/integrated/test-coordinates-initialization/runtest
+ make build-check-integrated-tests
/usr/bin/cmake -S/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f -B/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0
make  -f CMakeFiles/Makefile2 build-check-integrated-tests
make[1]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
/usr/bin/cmake -S/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f -B/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/CMakeFiles 55
make  -f CMakeFiles/Makefile2 CMakeFiles/build-check-integrated-tests.dir/all
make[2]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color="
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[  1%] Built target pvpre
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cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color="
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[  5%] Built target pvode
make  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/CMakeFiles/bout++.dir/DependInfo.cmake "--color="
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make  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
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[ 58%] Built target bout++
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cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-yupdown-weights /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-yupdown-weights /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
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make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 58%] Building CXX object tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-yupdown-weights && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-yupdown-weights -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o -MF CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o.d -o CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-yupdown-weights/test_yupdown_weights.cxx
[ 60%] Linking CXX executable test_yupdown_weights
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-yupdown-weights && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-yupdown-weights.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-yupdown-weights.dir/link.d "CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o" -o test_yupdown_weights  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 60%] Built target test-yupdown-weights
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make[3]: Nothing to be done for 'tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-313-x86_64-linux-gnu.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 63%] Built target boutpp.cpython-313-x86_64-linux-gnu
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 63%] Building python interface
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpython-313-x86_64-linux-gnu.so /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-313-x86_64-linux-gnu.so
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/../boutpp/__init__.py
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 63%] Built target boutpp
make  -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-backtrace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-backtrace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 63%] Building CXX object tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/boutexcept.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-backtrace && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-backtrace -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/boutexcept.cxx.o -MF CMakeFiles/test-backtrace.dir/boutexcept.cxx.o.d -o CMakeFiles/test-backtrace.dir/boutexcept.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-backtrace/boutexcept.cxx
[ 65%] Linking CXX executable boutexcept
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-backtrace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-backtrace.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-backtrace.dir/link.d "CMakeFiles/test-backtrace.dir/boutexcept.cxx.o" -o boutexcept  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 65%] Built target test-backtrace
make  -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-beuler /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-beuler /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 65%] Building CXX object tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/test_beuler.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-beuler && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-beuler -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/test_beuler.cxx.o -MF CMakeFiles/test_beuler.dir/test_beuler.cxx.o.d -o CMakeFiles/test_beuler.dir/test_beuler.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-beuler/test_beuler.cxx
[ 65%] Linking CXX executable test_beuler
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-beuler && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_beuler.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_beuler.dir/link.d CMakeFiles/test_beuler.dir/test_beuler.cxx.o -o test_beuler  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 65%] Built target test_beuler
make  -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 65%] Building CXX object tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-bout-override-default-option && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-bout-override-default-option -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o -MF CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o.d -o CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-bout-override-default-option/test-bout-override-default-option.cxx
[ 65%] Linking CXX executable test-bout-override-default-option
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-bout-override-default-option && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-bout-override-default-option.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-bout-override-default-option.dir/link.d "CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o" -o test-bout-override-default-option  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 65%] Built target test-bout-override-default-option
make  -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-command-args /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-command-args /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 65%] Building CXX object tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/command-args.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-command-args && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-command-args -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/command-args.cxx.o -MF CMakeFiles/test-command-args.dir/command-args.cxx.o.d -o CMakeFiles/test-command-args.dir/command-args.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-command-args/command-args.cxx
[ 67%] Linking CXX executable command-args
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-command-args && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-command-args.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-command-args.dir/link.d "CMakeFiles/test-command-args.dir/command-args.cxx.o" -o command-args  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 67%] Built target test-command-args
make  -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-communications /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-communications /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-communications/CMakeFiles/test-communications.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 67%] Building CXX object tests/integrated/test-communications/CMakeFiles/test-communications.dir/test-communications.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-communications && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-communications -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-communications/CMakeFiles/test-communications.dir/test-communications.cxx.o -MF CMakeFiles/test-communications.dir/test-communications.cxx.o.d -o CMakeFiles/test-communications.dir/test-communications.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-communications/test-communications.cxx
[ 67%] Linking CXX executable test-communications
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-communications && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-communications.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-communications.dir/link.d "CMakeFiles/test-communications.dir/test-communications.cxx.o" -o test-communications  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 67%] Built target test-communications
make  -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 67%] Building CXX object tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-coordinates-initialization && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-coordinates-initialization -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o -MF CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o.d -o CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-coordinates-initialization/test-coordinates-initialization.cxx
[ 69%] Linking CXX executable test-coordinates-initialization
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-coordinates-initialization && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-coordinates-initialization.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-coordinates-initialization.dir/link.d "CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o" -o test-coordinates-initialization  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 69%] Built target test-coordinates-initialization
make  -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-cyclic /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-cyclic /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 69%] Building CXX object tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-cyclic && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-cyclic -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o -MF CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o.d -o CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-cyclic/test_cyclic.cxx
[ 69%] Linking CXX executable test_cyclic
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-cyclic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-cyclic.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-cyclic.dir/link.d "CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o" -o test_cyclic  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 69%] Built target test-cyclic
make  -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-delp2 /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-delp2 /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 70%] Building CXX object tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/test_delp2.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-delp2 && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-delp2 -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/test_delp2.cxx.o -MF CMakeFiles/test-delp2.dir/test_delp2.cxx.o.d -o CMakeFiles/test-delp2.dir/test_delp2.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-delp2/test_delp2.cxx
[ 70%] Linking CXX executable test_delp2
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-delp2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-delp2.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-delp2.dir/link.d "CMakeFiles/test-delp2.dir/test_delp2.cxx.o" -o test_delp2  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 70%] Built target test-delp2
make  -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-datafilefacade /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-datafilefacade /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 70%] Building CXX object tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-datafilefacade && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-datafilefacade -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o -MF CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o.d -o CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-datafilefacade/test-datafile-facade.cxx
[ 70%] Linking CXX executable test-datafile-facade
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-datafilefacade && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-datafile-facade.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-datafile-facade.dir/link.d "CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o" -o test-datafile-facade  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 70%] Built target test-datafile-facade
make  -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-drift-instability /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-drift-instability /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 72%] Building CXX object tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/2fluid.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-drift-instability && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-drift-instability -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/2fluid.cxx.o -MF CMakeFiles/test-drift-instability.dir/2fluid.cxx.o.d -o CMakeFiles/test-drift-instability.dir/2fluid.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-drift-instability/2fluid.cxx
[ 72%] Linking CXX executable 2fluid
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-drift-instability && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-drift-instability.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-drift-instability.dir/link.d "CMakeFiles/test-drift-instability.dir/2fluid.cxx.o" -o 2fluid  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 72%] Built target test-drift-instability
make  -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 72%] Building CXX object tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-drift-instability-staggered && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-drift-instability-staggered -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o -MF CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o.d -o CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-drift-instability-staggered/2fluid.cxx
[ 72%] Linking CXX executable 2fluid
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-drift-instability-staggered && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-drift-instability-staggered.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-drift-instability-staggered.dir/link.d "CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o" -o 2fluid  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 72%] Built target test-drift-instability-staggered
make  -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 72%] Building CXX object tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-fieldgroupComm && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-fieldgroupComm -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o -MF CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o.d -o CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-fieldgroupComm/test_fieldgroupcomm.cxx
[ 74%] Linking CXX executable test_fieldgroupcomm
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-fieldgroupComm && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-fieldgroupComm.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-fieldgroupComm.dir/link.d "CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o" -o test_fieldgroupcomm  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 74%] Built target test-fieldgroupComm
make  -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-griddata /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-griddata /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 74%] Building CXX object tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/test_griddata.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-griddata && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-griddata -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/test_griddata.cxx.o -MF CMakeFiles/test-griddata.dir/test_griddata.cxx.o.d -o CMakeFiles/test-griddata.dir/test_griddata.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-griddata/test_griddata.cxx
[ 74%] Linking CXX executable test_griddata
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-griddata && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-griddata.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-griddata.dir/link.d "CMakeFiles/test-griddata.dir/test_griddata.cxx.o" -o test_griddata  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 74%] Built target test-griddata
make  -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 74%] Building CXX object tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-griddata-yboundary-guards && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-griddata-yboundary-guards -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o -MF CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o.d -o CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-griddata-yboundary-guards/test_griddata.cxx
[ 74%] Linking CXX executable test_griddata
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-griddata-yboundary-guards && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-griddata-yboundary-guards.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-griddata-yboundary-guards.dir/link.d "CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o" -o test_griddata  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 74%] Built target test-griddata-yboundary-guards
make  -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-gyro /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-gyro /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 76%] Building CXX object tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/test_gyro.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-gyro && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-gyro -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/test_gyro.cxx.o -MF CMakeFiles/test-gyro.dir/test_gyro.cxx.o.d -o CMakeFiles/test-gyro.dir/test_gyro.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-gyro/test_gyro.cxx
[ 76%] Linking CXX executable test_gyro
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-gyro && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-gyro.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-gyro.dir/link.d "CMakeFiles/test-gyro.dir/test_gyro.cxx.o" -o test_gyro  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 76%] Built target test-gyro
make  -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-initial /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-initial /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-initial/CMakeFiles/test-initial.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 76%] Building CXX object tests/integrated/test-initial/CMakeFiles/test-initial.dir/test_initial.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-initial && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-initial -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-initial/CMakeFiles/test-initial.dir/test_initial.cxx.o -MF CMakeFiles/test-initial.dir/test_initial.cxx.o.d -o CMakeFiles/test-initial.dir/test_initial.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-initial/test_initial.cxx
[ 76%] Linking CXX executable test_initial
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-initial && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-initial.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-initial.dir/link.d "CMakeFiles/test-initial.dir/test_initial.cxx.o" -o test_initial  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 76%] Built target test-initial
make  -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interchange-instability /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-interchange-instability /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 78%] Building CXX object tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-interchange-instability && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interchange-instability -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o -MF CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o.d -o CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interchange-instability/2fluid.cxx
[ 78%] Linking CXX executable 2fluid
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-interchange-instability && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interchange-instability.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-interchange-instability.dir/link.d "CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o" -o 2fluid  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 78%] Built target test-interchange-instability
make  -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interpolate /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-interpolate /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 78%] Building CXX object tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-interpolate && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interpolate -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o -MF CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o.d -o CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interpolate/test_interpolate.cxx
[ 78%] Linking CXX executable test_interpolate
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-interpolate && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interpolate.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-interpolate.dir/link.d "CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o" -o test_interpolate  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 78%] Built target test-interpolate
make  -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interpolate-z /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-interpolate-z /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 80%] Building CXX object tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-interpolate-z && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interpolate-z -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o -MF CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o.d -o CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-interpolate-z/test_interpolate.cxx
[ 80%] Linking CXX executable test_interpolate
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-interpolate-z && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interpolate-z.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-interpolate-z.dir/link.d "CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o" -o test_interpolate  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 80%] Built target test-interpolate-z
make  -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invertable-operator /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-invertable-operator /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 80%] Building CXX object tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-invertable-operator && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invertable-operator -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o -MF CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o.d -o CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invertable-operator/invertable_operator.cxx
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invertable-operator/invertable_operator.cxx:4:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx: In instantiation of ‘PetscErrorCode bout::inversion::InvertableOperator<T>::setup() [with T = Field3D; PetscErrorCode = int]’:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invertable-operator/invertable_operator.cxx:51:19:   required from here
   51 |     mySolver.setup();
      |     ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:222:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  222 |         if (localmesh->firstY() or localmesh->lastY()) {
      |             ~~~~~~~~~~~~~~~~~^~
In file included from /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:44:
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:447:66: note: declared here
  447 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:222:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  222 |         if (localmesh->firstY() or localmesh->lastY()) {
      |             ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:447:66: note: declared here
  447 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:222:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  222 |         if (localmesh->firstY() or localmesh->lastY()) {
      |                                    ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:451:65: note: declared here
  451 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:222:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  222 |         if (localmesh->firstY() or localmesh->lastY()) {
      |                                    ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:451:65: note: declared here
  451 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:225:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  225 |               if (localmesh->firstY()) {
      |                   ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:447:66: note: declared here
  447 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:225:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  225 |               if (localmesh->firstY()) {
      |                   ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:447:66: note: declared here
  447 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:231:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  231 |               if (localmesh->lastY()) {
      |                   ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:451:65: note: declared here
  451 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/invertable_operator.hxx:231:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  231 |               if (localmesh->lastY()) {
      |                   ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/mesh.hxx:451:65: note: declared here
  451 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
[ 80%] Linking CXX executable invertable_operator
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-invertable-operator && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-invertable-operator.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-invertable-operator.dir/link.d "CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o" -o invertable_operator  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 80%] Built target test-invertable-operator
make  -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invpar /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-invpar /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 81%] Building CXX object tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/test_invpar.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-invpar && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invpar -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/test_invpar.cxx.o -MF CMakeFiles/test-invpar.dir/test_invpar.cxx.o.d -o CMakeFiles/test-invpar.dir/test_invpar.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-invpar/test_invpar.cxx
[ 81%] Linking CXX executable test_invpar
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-invpar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-invpar.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-invpar.dir/link.d "CMakeFiles/test-invpar.dir/test_invpar.cxx.o" -o test_invpar  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 81%] Built target test-invpar
make  -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
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make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 81%] Building CXX object tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/test_laplace.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-laplace && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplace -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/test_laplace.cxx.o -MF CMakeFiles/test-laplace.dir/test_laplace.cxx.o.d -o CMakeFiles/test-laplace.dir/test_laplace.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplace/test_laplace.cxx
[ 81%] Linking CXX executable test_laplace
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplace.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-laplace.dir/link.d "CMakeFiles/test-laplace.dir/test_laplace.cxx.o" -o test_laplace  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 81%] Built target test-laplace
make  -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 81%] Building CXX object tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-laplace-petsc3d && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplace-petsc3d -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o -MF CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o.d -o CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplace-petsc3d/test-laplace3d.cxx
[ 83%] Linking CXX executable test-laplace3d
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-laplace-petsc3d && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplace-petsc3d.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-laplace-petsc3d.dir/link.d "CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o" -o test-laplace3d  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 83%] Built target test-laplace-petsc3d
make  -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 83%] Building CXX object tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-laplacexy-fv && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexy-fv -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o -MF CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o.d -o CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexy-fv/test-laplacexy.cxx
[ 83%] Linking CXX executable test-laplacexy
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-laplacexy-fv && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexy-fv.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-laplacexy-fv.dir/link.d "CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o" -o test-laplacexy  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 83%] Built target test-laplacexy-fv
make  -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexy-short /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-laplacexy-short /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 83%] Building CXX object tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-laplacexy-short && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexy-short -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o -MF CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o.d -o CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexy-short/test-laplacexy.cxx
[ 85%] Linking CXX executable test-laplacexy
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-laplacexy-short && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexy-short.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-laplacexy-short.dir/link.d "CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o" -o test-laplacexy  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 85%] Built target test-laplacexy-short
make  -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexz /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-laplacexz /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 85%] Building CXX object tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-laplacexz && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexz -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o -MF CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o.d -o CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-laplacexz/test-laplacexz.cxx
[ 85%] Linking CXX executable test-laplacexz
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-laplacexz && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexz.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-laplacexz.dir/link.d "CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o" -o test-laplacexz  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 85%] Built target test-laplacexz
make  -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 85%] Building CXX object tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-multigrid_laplace && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-multigrid_laplace -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o -MF CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o.d -o CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-multigrid_laplace/test_multigrid_laplace.cxx
[ 87%] Linking CXX executable test_multigrid_laplace
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-multigrid_laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-multigrid-laplace.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-multigrid-laplace.dir/link.d "CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o" -o test_multigrid_laplace  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 87%] Built target test-multigrid-laplace
make  -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-naulin-laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-naulin-laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 87%] Building CXX object tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-naulin-laplace && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-naulin-laplace -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o -MF CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o.d -o CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-naulin-laplace/test_naulin_laplace.cxx
[ 87%] Linking CXX executable test_naulin_laplace
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-naulin-laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-naulin-laplace.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-naulin-laplace.dir/link.d "CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o" -o test_naulin_laplace  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 87%] Built target test-naulin-laplace
make  -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-options-netcdf /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-options-netcdf /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 87%] Building CXX object tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-options-netcdf && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-options-netcdf -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o -MF CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o.d -o CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-options-netcdf/test-options-netcdf.cxx
[ 89%] Linking CXX executable test-options-netcdf
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-options-netcdf && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-options-netcdf.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-options-netcdf.dir/link.d "CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o" -o test-options-netcdf  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 89%] Built target test-options-netcdf
make  -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-petsc_laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-petsc_laplace /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 89%] Building CXX object tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-petsc_laplace && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-petsc_laplace -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o -MF CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o.d -o CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-petsc_laplace/test_petsc_laplace.cxx
[ 89%] Linking CXX executable test_petsc_laplace
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-petsc_laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-petsc-laplace.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-petsc-laplace.dir/link.d "CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o" -o test_petsc_laplace  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 89%] Built target test-petsc-laplace
make  -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 89%] Building CXX object tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-petsc_laplace_MAST-grid && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-petsc_laplace_MAST-grid -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o -MF CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o.d -o CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-petsc_laplace_MAST-grid/test_petsc_laplace_MAST_grid.cxx
[ 89%] Linking CXX executable test_petsc_laplace_MAST_grid
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-petsc_laplace_MAST-grid && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-petsc-laplace-MAST-grid.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-petsc-laplace-MAST-grid.dir/link.d "CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o" -o test_petsc_laplace_MAST_grid  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 89%] Built target test-petsc-laplace-MAST-grid
make  -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-restart-io /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-restart-io /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 90%] Building CXX object tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-restart-io && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-restart-io -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o -MF CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o.d -o CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-restart-io/test-restart-io.cxx
[ 90%] Linking CXX executable test-restart-io
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-restart-io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-restart-io.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-restart-io.dir/link.d "CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o" -o test-restart-io  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 90%] Built target test-restart-io
make  -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-restarting /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-restarting /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 90%] Building CXX object tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/test_restarting.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-restarting && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-restarting -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/test_restarting.cxx.o -MF CMakeFiles/test-restarting.dir/test_restarting.cxx.o.d -o CMakeFiles/test-restarting.dir/test_restarting.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-restarting/test_restarting.cxx
[ 90%] Linking CXX executable test_restarting
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-restarting && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-restarting.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-restarting.dir/link.d "CMakeFiles/test-restarting.dir/test_restarting.cxx.o" -o test_restarting  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 90%] Built target test-restarting
make  -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-smooth /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-smooth /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 92%] Building CXX object tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/test_smooth.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-smooth && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-smooth -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/test_smooth.cxx.o -MF CMakeFiles/test-smooth.dir/test_smooth.cxx.o.d -o CMakeFiles/test-smooth.dir/test_smooth.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-smooth/test_smooth.cxx
[ 92%] Linking CXX executable test_smooth
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-smooth && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-smooth.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-smooth.dir/link.d "CMakeFiles/test-smooth.dir/test_smooth.cxx.o" -o test_smooth  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 92%] Built target test-smooth
make  -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-snb /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-snb /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-snb/CMakeFiles/test-snb.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 92%] Building CXX object tests/integrated/test-snb/CMakeFiles/test-snb.dir/test_snb.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-snb && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-snb -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-snb/CMakeFiles/test-snb.dir/test_snb.cxx.o -MF CMakeFiles/test-snb.dir/test_snb.cxx.o.d -o CMakeFiles/test-snb.dir/test_snb.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-snb/test_snb.cxx
[ 92%] Linking CXX executable test_snb
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-snb && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-snb.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-snb.dir/link.d "CMakeFiles/test-snb.dir/test_snb.cxx.o" -o test_snb  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 92%] Built target test-snb
make  -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-solver /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-solver /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-solver/CMakeFiles/test-solver.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 94%] Building CXX object tests/integrated/test-solver/CMakeFiles/test-solver.dir/test_solver.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-solver && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-solver -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-solver/CMakeFiles/test-solver.dir/test_solver.cxx.o -MF CMakeFiles/test-solver.dir/test_solver.cxx.o.d -o CMakeFiles/test-solver.dir/test_solver.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-solver/test_solver.cxx
[ 94%] Linking CXX executable test_solver
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-solver && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-solver.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-solver.dir/link.d "CMakeFiles/test-solver.dir/test_solver.cxx.o" -o test_solver  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 94%] Built target test-solver
make  -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-squash /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-squash /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-squash/CMakeFiles/test-squash.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 94%] Building CXX object tests/integrated/test-squash/CMakeFiles/test-squash.dir/squash.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-squash && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-squash -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-squash/CMakeFiles/test-squash.dir/squash.cxx.o -MF CMakeFiles/test-squash.dir/squash.cxx.o.d -o CMakeFiles/test-squash.dir/squash.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-squash/squash.cxx
[ 94%] Linking CXX executable squash
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-squash && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-squash.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-squash.dir/link.d "CMakeFiles/test-squash.dir/squash.cxx.o" -o squash  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 94%] Built target test-squash
make  -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-stopCheck /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-stopCheck /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 96%] Building CXX object tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-stopCheck && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-stopCheck -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o -MF CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o.d -o CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-stopCheck/test_stopCheck.cxx
[ 96%] Linking CXX executable test_stopCheck
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-stopCheck && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-stopCheck.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-stopCheck.dir/link.d "CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o" -o test_stopCheck  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 96%] Built target test-stopCheck
make  -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-stopCheck-file /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-stopCheck-file /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 96%] Building CXX object tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-stopCheck-file && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-stopCheck-file -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o -MF CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o.d -o CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-stopCheck-file/test_stopCheck.cxx
[ 96%] Linking CXX executable test_stopCheck
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-stopCheck-file && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-stopCheck-file.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-stopCheck-file.dir/link.d "CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o" -o test_stopCheck  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 96%] Built target test-stopCheck-file
make  -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-twistshift /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-twistshift /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 96%] Building CXX object tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-twistshift && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-twistshift -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o -MF CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o.d -o CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-twistshift/test-twistshift.cxx
[ 98%] Linking CXX executable test-twistshift
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-twistshift && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-twistshift.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-twistshift.dir/link.d "CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o" -o test-twistshift  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 98%] Built target test-twistshift
make  -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 98%] Building CXX object tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-twistshift-staggered && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-twistshift-staggered -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o -MF CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o.d -o CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-twistshift-staggered/test-twistshift.cxx
[ 98%] Linking CXX executable test-twistshift
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-twistshift-staggered && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-twistshift-staggered.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-twistshift-staggered.dir/link.d "CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o" -o test-twistshift  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 98%] Built target test-twistshift-staggered
make  -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-vec /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-vec /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-vec/CMakeFiles/test-vec.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[ 98%] Building CXX object tests/integrated/test-vec/CMakeFiles/test-vec.dir/testVec.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-vec && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-vec -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-vec/CMakeFiles/test-vec.dir/testVec.cxx.o -MF CMakeFiles/test-vec.dir/testVec.cxx.o.d -o CMakeFiles/test-vec.dir/testVec.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-vec/testVec.cxx
[100%] Linking CXX executable testVec
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-vec && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-vec.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-vec.dir/link.d "CMakeFiles/test-vec.dir/testVec.cxx.o" -o testVec  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[100%] Built target test-vec
make  -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-yupdown /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-yupdown /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[100%] Building CXX object tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-yupdown && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-yupdown -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/include -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o -MF CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o.d -o CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o -c /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/tests/integrated/test-yupdown/test_yupdown.cxx
[100%] Linking CXX executable test_yupdown
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-yupdown && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-yupdown.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test-yupdown.dir/link.d "CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o" -o test_yupdown  -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.0.2 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.1.1 /usr/lib64/mpich/lib/libsundials_cvode.so.7.1.1 /usr/lib64/mpich/lib/libsundials_ida.so.7.1.1 /usr/lib64/mpich/lib/libsundials_arkode.so.6.1.1 /usr/lib64/mpich/lib/libsundials_core.so.7.1.1 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[100%] Built target test-yupdown
make  -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/CMakeFiles/build-check-integrated-tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make  -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
make[3]: Nothing to be done for 'CMakeFiles/build-check-integrated-tests.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
[100%] Built target build-check-integrated-tests
make[2]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/CMakeFiles 0
make[1]: Leaving directory '/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich'
+ pushd tests/integrated/test-boutpp/simple-model
~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tests/integrated/test-boutpp/simple-model ~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich ~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f
+ cat
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
Function "MPI_Comm_rank" not defined.
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0x7fffc98746c0 (LWP 23073)]
[New Thread 0x7fffc90736c0 (LWP 23074)]

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f73bc1 in BoutInitialise (argc=@0x7fffffffc8a0: 3, argv=@0x7fffffffc878: 0x55555567f040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x00007ffff73ccc57 in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 10 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 23070

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff70a537b in BoutMesh::load (this=0x555555c70340) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x00007ffff6f73e56 in BoutInitialise (argc=@0x7fffffffc8a0: 3, argv=@0x7fffffffc878: 0x55555567f040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x00007ffff73ccc57 in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7196b8d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719383f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff718a1e1 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x55555567dbd0, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=this@entry=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718ffc1 in bout::OptionsIOFactory::createOutput (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x00007ffff711fcad in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x00007ffff73bcfa2 in PythonModel::PythonModel (this=0x555555c85a50) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d1eb0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d1eb0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e647 in __Pyx_PyObject_Call (func=0x7ffff74db430, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7ffff74db430) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7ffff74db430, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be591 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d1eb0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option output:prefix = BOUT.dmp (user_default)
	Option output:path = mini (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7196b8d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719383f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff718a1e1 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x55555567dbd0, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=this@entry=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718fcf5 in bout::OptionsIOFactory::createRestart (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x00007ffff711fda5 in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x00007ffff73bcfa2 in PythonModel::PythonModel (this=0x555555c85a50) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d1eb0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d1eb0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e647 in __Pyx_PyObject_Call (func=0x7ffff74db430, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7ffff74db430) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7ffff74db430, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be591 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d1eb0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:path = mini (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7152e14 in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x00007ffff7131100 in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7ab80) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7ab80) at /usr/include/c++/14/bits/std_function.h:291
#9  0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555567e370, __args#0=0x555555c7ab80) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c85a50) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d1eb0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d1eb0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#16 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#17 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#18 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#29 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000555555555095 in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bce09 in sunLoggerIsOutputRank (logger=0x555555c8de00, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=-2080374784, output_rank=output_rank@entry=0, logger_ptr=logger_ptr@entry=0x7fffffffc400) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:155
#3  0x00007ffff47bd627 in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:178
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8f180) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7dba8, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7ab80) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7ab80) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555567e370, __args#0=0x555555c7ab80) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c85a50) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d1eb0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d1eb0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bceb9 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0x555555c8de00, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:205
#3  0x00007ffff47bd63b in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:185
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8f180) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7dba8, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7ab80) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7ab80) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555567e370, __args#0=0x555555c7ab80) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c85a50) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d1eb0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d1eb0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bcfb9 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0x555555c8de00, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:236
#3  0x00007ffff47bd67c in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:187
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8f180) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7dba8, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7ab80) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7ab80) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555567e370, __args#0=0x555555c7ab80) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c85a50) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d1eb0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d1eb0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd0f1 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:296
#3  0x00007ffff47bd68f in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:189
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8f180) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7dba8, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7ab80) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7ab80) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555567e370, __args#0=0x555555c7ab80) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c85a50) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d1eb0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d1eb0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd091 in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:262
#2  0x00007ffff47bd6a2 in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:191
#3  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8f180) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#4  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7dba8, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7ab80) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7ab80) at /usr/include/c++/14/bits/std_function.h:291
#12 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555567e370, __args#0=0x555555c7ab80) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c85a50) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d1eb0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d1eb0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#19 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#20 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#21 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#32 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000555555555095 in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option stopCheckName = BOUT.stop (default)
	Option datadir = mini (Command line)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 32f14faf-425d-451c-bbd2-802f1f2783da

Run started at  : Tue Dec 10 12:28:13 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option optionfile = BOUT.inp (default)
	Option datadir = mini (Command line)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       1.26e-02     0.4    0.0    0.6  151.7  -52.6
1.000e-01        253       2.05e-02    15.6    0.0    0.0   55.2   29.2
2.000e-01        152       1.53e-02    12.5    0.0    0.0   52.0   35.5
3.000e-01        150       1.49e-02    13.0    0.0    0.0   52.7   34.2
4.000e-01        155       1.50e-02    13.2    0.0    0.0   52.5   34.3
5.000e-01        139       1.46e-02    12.0    0.0    0.0   53.9   34.2
6.000e-01        157       1.51e-02    13.3    0.0    0.0   52.6   34.1
7.000e-01        120       1.44e-02    10.8    0.0    0.0   54.8   34.4
8.000e-01        146       1.50e-02    12.4    0.0    0.0   53.5   34.1
9.000e-01        153       1.49e-02    13.1    0.0    0.0   53.3   33.7
1.000e+00        162       1.49e-02    13.7    0.0    0.0   52.6   33.7
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Tue Dec 10 12:28:14 2024
Run time : 1 s

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd569 in sunLoggerIsOutputRank (logger=0x555555c8de00, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:460
#3  0x00007ffff47b8df9 in SUNContext_Free (sunctx=0x555555c8f180) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:290
#4  0x00007ffff7131036 in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/mpich-x86_64/sundials/sundials_context.hpp:55
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x00007ffff71310b5 in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x00007ffff73c1380 in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:123
#11 0x00007ffff73bca5a in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0x7ffff74d1eb0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54496
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0x7ffff74d1eb0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54450
#13 0x00007ffff73c2d23 in __pyx_pf_9libboutpp_12PhysicsModel_10_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56539
#14 __pyx_pw_9libboutpp_12PhysicsModel_11_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56474
#15 0x00007ffff73c38ee in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57562
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#17 0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#18 0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#22 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000555555555095 in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f743d6 in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x00007ffff73c4764 in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:58017
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#5  0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#10 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000555555555095 in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0x7fffc98746c0 (LWP 23073) exited]
[Thread 0x7fffc90736c0 (LWP 23074) exited]
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
Exception ignored in: 'libboutpp.PhysicsModelBase.__dealloc__'
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 23070) exited normally]
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
Function "MPI_Comm_rank" not defined.
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0x7fffc98746c0 (LWP 23084)]
[New Thread 0x7fffc90736c0 (LWP 23085)]

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f73bc1 in BoutInitialise (argc=@0x7fffffffc8a0: 3, argv=@0x7fffffffc878: 0x55555565f1f0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x00007ffff73ccc57 in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 10 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 23081

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff70a537b in BoutMesh::load (this=0x555555c701a0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x00007ffff6f73e56 in BoutInitialise (argc=@0x7fffffffc8a0: 3, argv=@0x7fffffffc878: 0x55555565f1f0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x00007ffff73ccc57 in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7196b8d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719383f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff718a1e1 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x55555565dd80, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=this@entry=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718ffc1 in bout::OptionsIOFactory::createOutput (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x00007ffff711fcad in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x00007ffff73bcfa2 in PythonModel::PythonModel (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e647 in __Pyx_PyObject_Call (func=0x7fffc9f14460, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffc9f14460) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffc9f14460, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be591 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option output:prefix = BOUT.dmp (user_default)
	Option output:path = mini (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7196b8d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719383f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff718a1e1 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x55555565dd80, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=this@entry=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718fcf5 in bout::OptionsIOFactory::createRestart (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x00007ffff711fda5 in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x00007ffff73bcfa2 in PythonModel::PythonModel (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e647 in __Pyx_PyObject_Call (func=0x7fffc9f14460, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffc9f14460) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffc9f14460, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be591 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:path = mini (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7152e14 in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x00007ffff7131100 in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#9  0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#16 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#17 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#18 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#29 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000555555555095 in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bce09 in sunLoggerIsOutputRank (logger=0x555555c8dc60, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=-2080374784, output_rank=output_rank@entry=0, logger_ptr=logger_ptr@entry=0x7fffffffc400) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:155
#3  0x00007ffff47bd627 in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:178
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bceb9 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0x555555c8dc60, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:205
#3  0x00007ffff47bd63b in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:185
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bcfb9 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0x555555c8dc60, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:236
#3  0x00007ffff47bd67c in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:187
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd0f1 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:296
#3  0x00007ffff47bd68f in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:189
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd091 in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:262
#2  0x00007ffff47bd6a2 in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:191
#3  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#4  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#12 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#19 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#20 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#21 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#32 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000555555555095 in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option stopCheckName = BOUT.stop (default)
	Option datadir = mini (Command line)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: fc1a541a-44b2-49d1-9017-6aec211bc533

Run started at  : Tue Dec 10 12:28:24 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option optionfile = BOUT.inp (default)
	Option datadir = mini (Command line)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       1.25e-02     0.0    0.0    0.6  152.4  -53.0
1.000e-01        253       2.06e-02    15.7    0.0    0.0   54.9   29.3
2.000e-01        152       1.50e-02    12.8    0.0    0.0   52.0   35.2
3.000e-01        150       1.48e-02    12.7    0.0    0.0   52.4   34.9
4.000e-01        155       1.47e-02    13.6    0.0    0.0   52.4   34.1
5.000e-01        139       1.47e-02    12.0    0.0    0.0   53.5   34.5
6.000e-01        157       1.49e-02    13.2    0.0    0.0   52.8   34.0
7.000e-01        120       1.43e-02    10.5    0.0    0.0   54.5   35.0
8.000e-01        146       1.46e-02    12.5    0.0    0.0   53.0   34.5
9.000e-01        153       1.46e-02    13.0    0.0    0.0   52.8   34.2
1.000e+00        162       1.48e-02    13.8    0.0    0.0   52.3   33.8
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Tue Dec 10 12:28:24 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd569 in sunLoggerIsOutputRank (logger=0x555555c8dc60, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:460
#3  0x00007ffff47b8df9 in SUNContext_Free (sunctx=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:290
#4  0x00007ffff7131036 in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/mpich-x86_64/sundials/sundials_context.hpp:55
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x00007ffff71310b5 in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x00007ffff73c1380 in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:123
#11 0x00007ffff73bca5a in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54496
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54450
#13 0x00007ffff73c2d23 in __pyx_pf_9libboutpp_12PhysicsModel_10_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56539
#14 __pyx_pw_9libboutpp_12PhysicsModel_11_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56474
#15 0x00007ffff73c38ee in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57562
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#17 0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#18 0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#22 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000555555555095 in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f743d6 in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x00007ffff73c4764 in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:58017
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#5  0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#10 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000555555555095 in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0x7fffc98746c0 (LWP 23084) exited]
[Thread 0x7fffc90736c0 (LWP 23085) exited]
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
Exception ignored in: 'libboutpp.PhysicsModelBase.__dealloc__'
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 23081) exited normally]
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
Function "MPI_Comm_rank" not defined.
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0x7fffc98746c0 (LWP 23095)]
[New Thread 0x7fffc90736c0 (LWP 23096)]

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f73bc1 in BoutInitialise (argc=@0x7fffffffc8a0: 3, argv=@0x7fffffffc878: 0x55555565f1f0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x00007ffff73ccc57 in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 10 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 23092

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff70a537b in BoutMesh::load (this=0x555555c701a0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x00007ffff6f73e56 in BoutInitialise (argc=@0x7fffffffc8a0: 3, argv=@0x7fffffffc878: 0x55555565f1f0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x00007ffff73ccc57 in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7196b8d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719383f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff718a1e1 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x55555565dd80, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=this@entry=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718ffc1 in bout::OptionsIOFactory::createOutput (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x00007ffff711fcad in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x00007ffff73bcfa2 in PythonModel::PythonModel (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e647 in __Pyx_PyObject_Call (func=0x7fffc9c43a60, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffc9c43a60) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffc9c43a60, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be591 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option output:prefix = BOUT.dmp (user_default)
	Option output:path = mini (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7196b8d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719383f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff718a1e1 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x55555565dd80, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=this@entry=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718fcf5 in bout::OptionsIOFactory::createRestart (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x00007ffff711fda5 in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x00007ffff73bcfa2 in PythonModel::PythonModel (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e647 in __Pyx_PyObject_Call (func=0x7fffc9c43a60, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffc9c43a60) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffc9c43a60, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be591 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:path = mini (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7152e14 in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x00007ffff7131100 in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#9  0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#16 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#17 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#18 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#29 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000555555555095 in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bce09 in sunLoggerIsOutputRank (logger=0x555555c8dc60, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=-2080374784, output_rank=output_rank@entry=0, logger_ptr=logger_ptr@entry=0x7fffffffc400) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:155
#3  0x00007ffff47bd627 in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:178
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bceb9 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0x555555c8dc60, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:205
#3  0x00007ffff47bd63b in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:185
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bcfb9 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0x555555c8dc60, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:236
#3  0x00007ffff47bd67c in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:187
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd0f1 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:296
#3  0x00007ffff47bd68f in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:189
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd091 in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:262
#2  0x00007ffff47bd6a2 in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:191
#3  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#4  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#12 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#19 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#20 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#21 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#32 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000555555555095 in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option stopCheckName = BOUT.stop (default)
	Option datadir = mini (Command line)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 456503c9-bba6-4e51-8598-1f6cc670f453

Run started at  : Tue Dec 10 12:28:34 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option optionfile = BOUT.inp (default)
	Option datadir = mini (Command line)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       1.25e-02     0.1    0.0    0.6  150.7  -51.4
1.000e-01        253       2.11e-02    15.6    0.0    0.0   53.8   30.6
2.000e-01        152       1.54e-02    12.8    0.0    0.0   51.6   35.6
3.000e-01        150       1.54e-02    12.6    0.0    0.0   52.3   35.1
4.000e-01        155       1.51e-02    13.2    0.0    0.0   52.0   34.8
5.000e-01        139       1.47e-02    12.0    0.0    0.0   53.7   34.3
6.000e-01        157       1.48e-02    13.7    0.0    0.0   52.8   33.5
7.000e-01        120       1.43e-02    10.9    0.0    0.0   54.4   34.7
8.000e-01        146       1.49e-02    12.6    0.0    0.0   53.4   34.0
9.000e-01        153       1.49e-02    13.1    0.0    0.0   52.5   34.4
1.000e+00        162       1.51e-02    13.7    0.0    0.0   52.5   33.8
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Tue Dec 10 12:28:34 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd569 in sunLoggerIsOutputRank (logger=0x555555c8dc60, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:460
#3  0x00007ffff47b8df9 in SUNContext_Free (sunctx=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:290
#4  0x00007ffff7131036 in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/mpich-x86_64/sundials/sundials_context.hpp:55
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x00007ffff71310b5 in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x00007ffff73c1380 in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:123
#11 0x00007ffff73bca5a in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54496
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54450
#13 0x00007ffff73c2d23 in __pyx_pf_9libboutpp_12PhysicsModel_10_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56539
#14 __pyx_pw_9libboutpp_12PhysicsModel_11_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56474
#15 0x00007ffff73c38ee in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57562
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#17 0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#18 0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#22 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000555555555095 in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f743d6 in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x00007ffff73c4764 in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:58017
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#5  0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#10 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000555555555095 in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0x7fffc90736c0 (LWP 23096) exited]
[Thread 0x7fffc98746c0 (LWP 23095) exited]
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
Exception ignored in: 'libboutpp.PhysicsModelBase.__dealloc__'
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 23092) exited normally]
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
Function "MPI_Comm_rank" not defined.
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0x7fffc98746c0 (LWP 23106)]
[New Thread 0x7fffc90736c0 (LWP 23107)]

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f73bc1 in BoutInitialise (argc=@0x7fffffffc8a0: 3, argv=@0x7fffffffc878: 0x55555565f1f0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x00007ffff73ccc57 in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 10 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 23103

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff70a537b in BoutMesh::load (this=0x555555c701a0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x00007ffff6f73e56 in BoutInitialise (argc=@0x7fffffffc8a0: 3, argv=@0x7fffffffc878: 0x55555565f1f0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x00007ffff73ccc57 in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7196b8d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719383f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff718a1e1 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x55555565dd80, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=this@entry=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718ffc1 in bout::OptionsIOFactory::createOutput (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x00007ffff711fcad in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x00007ffff73bcfa2 in PythonModel::PythonModel (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e647 in __Pyx_PyObject_Call (func=0x7fffc9cb87c0, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffc9cb87c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffc9cb87c0, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be591 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option output:prefix = BOUT.dmp (user_default)
	Option output:path = mini (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7196b8d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719383f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff718a1e1 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x55555565dd80, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=this@entry=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718fcf5 in bout::OptionsIOFactory::createRestart (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x00007ffff711fda5 in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x00007ffff73bcfa2 in PythonModel::PythonModel (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e647 in __Pyx_PyObject_Call (func=0x7fffc9cb87c0, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffc9cb87c0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffc9cb87c0, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be591 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:path = mini (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7152e14 in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x00007ffff7131100 in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#9  0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#16 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#17 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#18 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#29 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000555555555095 in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bce09 in sunLoggerIsOutputRank (logger=0x555555c8dc60, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=-2080374784, output_rank=output_rank@entry=0, logger_ptr=logger_ptr@entry=0x7fffffffc400) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:155
#3  0x00007ffff47bd627 in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:178
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bceb9 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0x555555c8dc60, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:205
#3  0x00007ffff47bd63b in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:185
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bcfb9 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0x555555c8dc60, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:236
#3  0x00007ffff47bd67c in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:187
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd0f1 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:296
#3  0x00007ffff47bd68f in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:189
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd091 in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:262
#2  0x00007ffff47bd6a2 in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:191
#3  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#4  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#12 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#19 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#20 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#21 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#32 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000555555555095 in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option stopCheckName = BOUT.stop (default)
	Option datadir = mini (Command line)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: c403ff17-a3d6-4946-9cd8-339a88ef3546

Run started at  : Tue Dec 10 12:28:44 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option optionfile = BOUT.inp (default)
	Option datadir = mini (Command line)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       1.25e-02     0.1    0.0    0.6  151.9  -52.6
1.000e-01        253       2.05e-02    15.9    0.0    0.0   54.7   29.4
2.000e-01        152       1.51e-02    13.0    0.0    0.0   51.5   35.5
3.000e-01        150       1.48e-02    12.8    0.0    0.0   52.6   34.6
4.000e-01        155       1.47e-02    13.1    0.0    0.0   52.7   34.2
5.000e-01        139       1.46e-02    12.1    0.0    0.0   53.2   34.7
6.000e-01        157       1.49e-02    13.2    0.0    0.0   53.0   33.8
7.000e-01        120       1.43e-02    10.4    0.0    0.0   55.1   34.5
8.000e-01        146       1.48e-02    13.2    0.0    0.0   53.2   33.6
9.000e-01        153       1.50e-02    12.9    0.0    0.0   53.5   33.5
1.000e+00        162       1.50e-02    13.6    0.0    0.0   52.4   34.0
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Tue Dec 10 12:28:44 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd569 in sunLoggerIsOutputRank (logger=0x555555c8dc60, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:460
#3  0x00007ffff47b8df9 in SUNContext_Free (sunctx=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:290
#4  0x00007ffff7131036 in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/mpich-x86_64/sundials/sundials_context.hpp:55
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x00007ffff71310b5 in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x00007ffff73c1380 in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:123
#11 0x00007ffff73bca5a in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54496
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54450
#13 0x00007ffff73c2d23 in __pyx_pf_9libboutpp_12PhysicsModel_10_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56539
#14 __pyx_pw_9libboutpp_12PhysicsModel_11_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56474
#15 0x00007ffff73c38ee in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57562
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#17 0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#18 0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#22 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000555555555095 in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f743d6 in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x00007ffff73c4764 in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:58017
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#5  0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#10 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000555555555095 in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0x7fffc98746c0 (LWP 23106) exited]
[Thread 0x7fffc90736c0 (LWP 23107) exited]
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
Exception ignored in: 'libboutpp.PhysicsModelBase.__dealloc__'
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 23103) exited normally]
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
Function "MPI_Comm_rank" not defined.
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0x7fffc98746c0 (LWP 23117)]
[New Thread 0x7fffc90736c0 (LWP 23118)]

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f73bc1 in BoutInitialise (argc=@0x7fffffffc8a0: 3, argv=@0x7fffffffc878: 0x55555565f1f0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x00007ffff73ccc57 in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 10 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 23114

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff70a537b in BoutMesh::load (this=0x555555c701a0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x00007ffff6f73e56 in BoutInitialise (argc=@0x7fffffffc8a0: 3, argv=@0x7fffffffc878: 0x55555565f1f0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x00007ffff73ccc57 in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7196b8d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719383f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff718a1e1 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x55555565dd80, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=this@entry=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718ffc1 in bout::OptionsIOFactory::createOutput (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x00007ffff711fcad in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x00007ffff73bcfa2 in PythonModel::PythonModel (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e647 in __Pyx_PyObject_Call (func=0x7fffca02b820, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffca02b820) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffca02b820, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be591 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option output:prefix = BOUT.dmp (user_default)
	Option output:path = mini (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7196b8d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719383f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff718a1e1 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x55555565dd80, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=this@entry=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718fcf5 in bout::OptionsIOFactory::createRestart (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x00007ffff711fda5 in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x00007ffff73bcfa2 in PythonModel::PythonModel (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e647 in __Pyx_PyObject_Call (func=0x7fffca02b820, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffca02b820) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffca02b820, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be591 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:path = mini (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7152e14 in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x00007ffff7131100 in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#9  0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#16 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#17 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#18 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#29 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000555555555095 in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bce09 in sunLoggerIsOutputRank (logger=0x555555c8dc60, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=-2080374784, output_rank=output_rank@entry=0, logger_ptr=logger_ptr@entry=0x7fffffffc400) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:155
#3  0x00007ffff47bd627 in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:178
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bceb9 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0x555555c8dc60, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:205
#3  0x00007ffff47bd63b in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:185
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bcfb9 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0x555555c8dc60, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:236
#3  0x00007ffff47bd67c in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:187
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd0f1 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:296
#3  0x00007ffff47bd68f in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:189
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd091 in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:262
#2  0x00007ffff47bd6a2 in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:191
#3  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#4  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#12 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#19 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#20 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#21 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#32 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000555555555095 in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option stopCheckName = BOUT.stop (default)
	Option datadir = mini (Command line)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 8a18da81-d5ef-487b-8947-9ceff853b459

Run started at  : Tue Dec 10 12:28:54 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option optionfile = BOUT.inp (default)
	Option datadir = mini (Command line)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       1.28e-02     0.2    0.0    0.6  151.2  -52.0
1.000e-01        253       2.07e-02    15.7    0.0    0.0   54.8   29.5
2.000e-01        152       1.52e-02    12.7    0.0    0.0   52.1   35.1
3.000e-01        150       1.49e-02    12.9    0.0    0.0   52.7   34.4
4.000e-01        155       1.48e-02    13.2    0.0    0.0   52.6   34.2
5.000e-01        139       1.47e-02    12.0    0.0    0.0   53.7   34.3
6.000e-01        157       1.50e-02    13.8    0.0    0.0   52.1   34.1
7.000e-01        120       1.44e-02    10.8    0.0    0.0   54.3   34.9
8.000e-01        146       1.47e-02    12.5    0.0    0.0   53.3   34.2
9.000e-01        153       1.49e-02    12.8    0.0    0.0   52.9   34.3
1.000e+00        162       1.49e-02    13.9    0.0    0.0   52.5   33.6
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Tue Dec 10 12:28:55 2024
Run time : 1 s

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd569 in sunLoggerIsOutputRank (logger=0x555555c8dc60, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:460
#3  0x00007ffff47b8df9 in SUNContext_Free (sunctx=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:290
#4  0x00007ffff7131036 in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/mpich-x86_64/sundials/sundials_context.hpp:55
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x00007ffff71310b5 in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x00007ffff73c1380 in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:123
#11 0x00007ffff73bca5a in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54496
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54450
#13 0x00007ffff73c2d23 in __pyx_pf_9libboutpp_12PhysicsModel_10_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56539
#14 __pyx_pw_9libboutpp_12PhysicsModel_11_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56474
#15 0x00007ffff73c38ee in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57562
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#17 0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#18 0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#22 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000555555555095 in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f743d6 in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x00007ffff73c4764 in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:58017
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#5  0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#10 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000555555555095 in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0x7fffc90736c0 (LWP 23118) exited]
[Thread 0x7fffc98746c0 (LWP 23117) exited]
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
Exception ignored in: 'libboutpp.PhysicsModelBase.__dealloc__'
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 23114) exited normally]
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Function "MPI_Comm_rank" not defined.
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0x7fffc98746c0 (LWP 23128)]
[New Thread 0x7fffc90736c0 (LWP 23129)]

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f73bc1 in BoutInitialise (argc=@0x7fffffffc8a0: 3, argv=@0x7fffffffc878: 0x55555565f1f0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x00007ffff73ccc57 in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 10 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 23125

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff70a537b in BoutMesh::load (this=0x555555c701a0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x00007ffff6f73e56 in BoutInitialise (argc=@0x7fffffffc8a0: 3, argv=@0x7fffffffc878: 0x55555565f1f0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x00007ffff73ccc57 in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7196b8d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719383f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff718a1e1 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x55555565dd80, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=this@entry=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718ffc1 in bout::OptionsIOFactory::createOutput (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x00007ffff711fcad in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x00007ffff73bcfa2 in PythonModel::PythonModel (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e647 in __Pyx_PyObject_Call (func=0x7fffc9dabb50, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffc9dabb50) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffc9dabb50, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be591 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option output:prefix = BOUT.dmp (user_default)
	Option output:path = mini (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7196b8d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719383f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff718a1e1 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x55555565dd80, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=this@entry=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718fcf5 in bout::OptionsIOFactory::createRestart (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x00007ffff711fda5 in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x00007ffff73bcfa2 in PythonModel::PythonModel (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e647 in __Pyx_PyObject_Call (func=0x7fffc9dabb50, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffc9dabb50) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffc9dabb50, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be591 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:path = mini (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7152e14 in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x00007ffff7131100 in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#9  0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#16 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#17 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#18 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#29 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000555555555095 in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bce09 in sunLoggerIsOutputRank (logger=0x555555c8dc60, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=-2080374784, output_rank=output_rank@entry=0, logger_ptr=logger_ptr@entry=0x7fffffffc400) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:155
#3  0x00007ffff47bd627 in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:178
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bceb9 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0x555555c8dc60, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:205
#3  0x00007ffff47bd63b in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:185
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bcfb9 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0x555555c8dc60, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:236
#3  0x00007ffff47bd67c in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:187
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd0f1 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:296
#3  0x00007ffff47bd68f in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:189
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd091 in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:262
#2  0x00007ffff47bd6a2 in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:191
#3  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#4  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#12 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#19 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#20 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#21 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#32 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000555555555095 in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option stopCheckName = BOUT.stop (default)
	Option datadir = mini (Command line)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: ca2ddac9-ab31-4011-b010-859f49111f24

Run started at  : Tue Dec 10 12:29:05 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option optionfile = BOUT.inp (default)
	Option datadir = mini (Command line)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       1.26e-02     0.2    0.0    0.6  152.2  -53.0
1.000e-01        253       2.04e-02    15.7    0.0    0.0   54.8   29.6
2.000e-01        152       1.52e-02    12.8    0.0    0.0   52.1   35.2
3.000e-01        150       1.49e-02    12.7    0.0    0.0   53.2   34.1
4.000e-01        155       1.47e-02    13.2    0.0    0.0   52.5   34.2
5.000e-01        139       1.45e-02    12.0    0.0    0.0   53.8   34.2
6.000e-01        157       1.48e-02    13.1    0.0    0.0   53.0   33.9
7.000e-01        120       1.45e-02    10.6    0.0    0.0   54.5   34.8
8.000e-01        146       1.49e-02    12.6    0.0    0.0   53.1   34.2
9.000e-01        153       1.50e-02    12.7    0.0    0.0   53.2   34.1
1.000e+00        162       1.51e-02    13.8    0.0    0.0   52.2   34.0
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Tue Dec 10 12:29:05 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd569 in sunLoggerIsOutputRank (logger=0x555555c8dc60, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:460
#3  0x00007ffff47b8df9 in SUNContext_Free (sunctx=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:290
#4  0x00007ffff7131036 in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/mpich-x86_64/sundials/sundials_context.hpp:55
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x00007ffff71310b5 in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x00007ffff73c1380 in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:123
#11 0x00007ffff73bca5a in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54496
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54450
#13 0x00007ffff73c2d23 in __pyx_pf_9libboutpp_12PhysicsModel_10_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56539
#14 __pyx_pw_9libboutpp_12PhysicsModel_11_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56474
#15 0x00007ffff73c38ee in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57562
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#17 0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#18 0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#22 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000555555555095 in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f743d6 in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x00007ffff73c4764 in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:58017
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#5  0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#10 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000555555555095 in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0x7fffc98746c0 (LWP 23128) exited]
[Thread 0x7fffc90736c0 (LWP 23129) exited]
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
Exception ignored in: 'libboutpp.PhysicsModelBase.__dealloc__'
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 23125) exited normally]
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
Function "MPI_Comm_rank" not defined.
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0x7fffc98746c0 (LWP 23139)]
[New Thread 0x7fffc90736c0 (LWP 23140)]

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f73bc1 in BoutInitialise (argc=@0x7fffffffc8a0: 3, argv=@0x7fffffffc878: 0x55555565f1f0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x00007ffff73ccc57 in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 10 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 23136

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff70a537b in BoutMesh::load (this=0x555555c701a0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x00007ffff6f73e56 in BoutInitialise (argc=@0x7fffffffc8a0: 3, argv=@0x7fffffffc878: 0x55555565f1f0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x00007ffff73ccc57 in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7196b8d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719383f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff718a1e1 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x55555565dd80, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=this@entry=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718ffc1 in bout::OptionsIOFactory::createOutput (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x00007ffff711fcad in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x00007ffff73bcfa2 in PythonModel::PythonModel (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e647 in __Pyx_PyObject_Call (func=0x7fffc9c4b790, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffc9c4b790) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffc9c4b790, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be591 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option output:prefix = BOUT.dmp (user_default)
	Option output:path = mini (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7196b8d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719383f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff718a1e1 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x55555565dd80, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=this@entry=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718fcf5 in bout::OptionsIOFactory::createRestart (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x00007ffff711fda5 in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x00007ffff73bcfa2 in PythonModel::PythonModel (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e647 in __Pyx_PyObject_Call (func=0x7fffc9c4b790, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffc9c4b790) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffc9c4b790, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be591 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:path = mini (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7152e14 in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x00007ffff7131100 in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#9  0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#16 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#17 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#18 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#29 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000555555555095 in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bce09 in sunLoggerIsOutputRank (logger=0x555555c8dc60, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=-2080374784, output_rank=output_rank@entry=0, logger_ptr=logger_ptr@entry=0x7fffffffc400) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:155
#3  0x00007ffff47bd627 in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:178
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bceb9 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0x555555c8dc60, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:205
#3  0x00007ffff47bd63b in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:185
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bcfb9 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0x555555c8dc60, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:236
#3  0x00007ffff47bd67c in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:187
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd0f1 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:296
#3  0x00007ffff47bd68f in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:189
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd091 in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:262
#2  0x00007ffff47bd6a2 in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:191
#3  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#4  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#12 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#19 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#20 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#21 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#32 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000555555555095 in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option stopCheckName = BOUT.stop (default)
	Option datadir = mini (Command line)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 4c1abd6e-233b-415c-8a3f-1167bd4b6783

Run started at  : Tue Dec 10 12:29:15 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option optionfile = BOUT.inp (default)
	Option datadir = mini (Command line)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       1.27e-02    -0.0    0.0    0.6  151.1  -51.7
1.000e-01        253       2.07e-02    16.0    0.0    0.0   54.5   29.5
2.000e-01        152       1.53e-02    12.6    0.0    0.0   52.0   35.3
3.000e-01        150       1.50e-02    12.8    0.0    0.0   52.5   34.7
4.000e-01        155       1.49e-02    13.1    0.0    0.0   52.7   34.1
5.000e-01        139       1.47e-02    12.1    0.0    0.0   53.8   34.2
6.000e-01        157       1.51e-02    13.6    0.0    0.0   52.7   33.7
7.000e-01        120       1.43e-02    10.8    0.0    0.0   54.4   34.8
8.000e-01        146       1.49e-02    12.5    0.0    0.0   53.4   34.1
9.000e-01        153       1.48e-02    12.8    0.0    0.0   53.3   33.9
1.000e+00        162       1.49e-02    13.8    0.0    0.0   52.3   33.9
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Tue Dec 10 12:29:15 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd569 in sunLoggerIsOutputRank (logger=0x555555c8dc60, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:460
#3  0x00007ffff47b8df9 in SUNContext_Free (sunctx=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:290
#4  0x00007ffff7131036 in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/mpich-x86_64/sundials/sundials_context.hpp:55
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x00007ffff71310b5 in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x00007ffff73c1380 in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:123
#11 0x00007ffff73bca5a in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54496
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54450
#13 0x00007ffff73c2d23 in __pyx_pf_9libboutpp_12PhysicsModel_10_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56539
#14 __pyx_pw_9libboutpp_12PhysicsModel_11_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56474
#15 0x00007ffff73c38ee in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57562
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#17 0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#18 0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#22 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000555555555095 in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f743d6 in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x00007ffff73c4764 in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:58017
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#5  0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#10 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000555555555095 in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0x7fffc98746c0 (LWP 23139) exited]
[Thread 0x7fffc90736c0 (LWP 23140) exited]
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
Exception ignored in: 'libboutpp.PhysicsModelBase.__dealloc__'
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 23136) exited normally]
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
Function "MPI_Comm_rank" not defined.
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0x7fffc98746c0 (LWP 23150)]
[New Thread 0x7fffc90736c0 (LWP 23151)]

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f73bc1 in BoutInitialise (argc=@0x7fffffffc8a0: 3, argv=@0x7fffffffc878: 0x55555565f1f0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x00007ffff73ccc57 in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 10 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 23147

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff70a537b in BoutMesh::load (this=0x555555c701a0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x00007ffff6f73e56 in BoutInitialise (argc=@0x7fffffffc8a0: 3, argv=@0x7fffffffc878: 0x55555565f1f0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x00007ffff73ccc57 in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7196b8d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719383f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff718a1e1 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x55555565dd80, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=this@entry=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718ffc1 in bout::OptionsIOFactory::createOutput (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x00007ffff711fcad in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x00007ffff73bcfa2 in PythonModel::PythonModel (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e647 in __Pyx_PyObject_Call (func=0x7fffc9c4b820, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffc9c4b820) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffc9c4b820, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be591 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option output:prefix = BOUT.dmp (user_default)
	Option output:path = mini (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7196b8d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719383f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff718a1e1 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x55555565dd80, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=this@entry=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718fcf5 in bout::OptionsIOFactory::createRestart (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x00007ffff711fda5 in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x00007ffff73bcfa2 in PythonModel::PythonModel (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e647 in __Pyx_PyObject_Call (func=0x7fffc9c4b820, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffc9c4b820) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffc9c4b820, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be591 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:path = mini (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7152e14 in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x00007ffff7131100 in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#9  0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#16 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#17 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#18 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#29 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000555555555095 in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bce09 in sunLoggerIsOutputRank (logger=0x555555c8dc60, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=-2080374784, output_rank=output_rank@entry=0, logger_ptr=logger_ptr@entry=0x7fffffffc400) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:155
#3  0x00007ffff47bd627 in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:178
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bceb9 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0x555555c8dc60, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:205
#3  0x00007ffff47bd63b in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:185
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bcfb9 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0x555555c8dc60, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:236
#3  0x00007ffff47bd67c in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:187
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd0f1 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:296
#3  0x00007ffff47bd68f in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:189
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd091 in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:262
#2  0x00007ffff47bd6a2 in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:191
#3  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#4  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#12 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#19 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#20 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#21 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#32 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000555555555095 in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option stopCheckName = BOUT.stop (default)
	Option datadir = mini (Command line)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 280034e1-53e3-41cf-bcd9-8f6827a51c9f

Run started at  : Tue Dec 10 12:29:25 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option optionfile = BOUT.inp (default)
	Option datadir = mini (Command line)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       1.26e-02     0.2    0.0    0.6  151.6  -52.4
1.000e-01        253       2.03e-02    15.4    0.0    0.0   55.3   29.3
2.000e-01        152       1.50e-02    12.8    0.0    0.0   51.5   35.7
3.000e-01        150       1.47e-02    13.0    0.0    0.0   52.6   34.4
4.000e-01        155       1.48e-02    13.3    0.0    0.0   52.7   34.0
5.000e-01        139       1.46e-02    12.4    0.0    0.0   53.3   34.3
6.000e-01        157       1.49e-02    13.6    0.0    0.0   52.5   33.8
7.000e-01        120       1.43e-02    10.7    0.0    0.0   54.7   34.6
8.000e-01        146       1.47e-02    12.8    0.0    0.0   53.2   34.1
9.000e-01        153       1.47e-02    13.1    0.0    0.0   52.9   33.9
1.000e+00        162       1.48e-02    13.6    0.0    0.0   52.9   33.5
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Tue Dec 10 12:29:25 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd569 in sunLoggerIsOutputRank (logger=0x555555c8dc60, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:460
#3  0x00007ffff47b8df9 in SUNContext_Free (sunctx=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:290
#4  0x00007ffff7131036 in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/mpich-x86_64/sundials/sundials_context.hpp:55
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x00007ffff71310b5 in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x00007ffff73c1380 in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:123
#11 0x00007ffff73bca5a in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54496
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54450
#13 0x00007ffff73c2d23 in __pyx_pf_9libboutpp_12PhysicsModel_10_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56539
#14 __pyx_pw_9libboutpp_12PhysicsModel_11_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56474
#15 0x00007ffff73c38ee in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57562
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#17 0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#18 0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#22 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000555555555095 in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f743d6 in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x00007ffff73c4764 in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:58017
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#5  0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#10 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000555555555095 in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0x7fffc90736c0 (LWP 23151) exited]
[Thread 0x7fffc98746c0 (LWP 23150) exited]
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
Exception ignored in: 'libboutpp.PhysicsModelBase.__dealloc__'
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 23147) exited normally]
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
Function "MPI_Comm_rank" not defined.
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0x7fffc98746c0 (LWP 23161)]
[New Thread 0x7fffc90736c0 (LWP 23162)]

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f73bc1 in BoutInitialise (argc=@0x7fffffffc8a0: 3, argv=@0x7fffffffc878: 0x55555565f1f0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x00007ffff73ccc57 in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 10 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 23158

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff70a537b in BoutMesh::load (this=0x555555c701a0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x00007ffff6f73e56 in BoutInitialise (argc=@0x7fffffffc8a0: 3, argv=@0x7fffffffc878: 0x55555565f1f0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x00007ffff73ccc57 in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7196b8d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719383f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff718a1e1 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x55555565dd80, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=this@entry=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718ffc1 in bout::OptionsIOFactory::createOutput (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x00007ffff711fcad in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x00007ffff73bcfa2 in PythonModel::PythonModel (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e647 in __Pyx_PyObject_Call (func=0x7fffc9c46650, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffc9c46650) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffc9c46650, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be591 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option output:prefix = BOUT.dmp (user_default)
	Option output:path = mini (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7196b8d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719383f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff718a1e1 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x55555565dd80, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=this@entry=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718fcf5 in bout::OptionsIOFactory::createRestart (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x00007ffff711fda5 in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x00007ffff73bcfa2 in PythonModel::PythonModel (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e647 in __Pyx_PyObject_Call (func=0x7fffc9c46650, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffc9c46650) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffc9c46650, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be591 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:path = mini (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7152e14 in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x00007ffff7131100 in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#9  0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#16 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#17 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#18 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#29 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000555555555095 in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bce09 in sunLoggerIsOutputRank (logger=0x555555c8dc60, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=-2080374784, output_rank=output_rank@entry=0, logger_ptr=logger_ptr@entry=0x7fffffffc400) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:155
#3  0x00007ffff47bd627 in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:178
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bceb9 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0x555555c8dc60, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:205
#3  0x00007ffff47bd63b in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:185
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bcfb9 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0x555555c8dc60, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:236
#3  0x00007ffff47bd67c in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:187
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd0f1 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:296
#3  0x00007ffff47bd68f in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:189
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd091 in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:262
#2  0x00007ffff47bd6a2 in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:191
#3  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#4  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#12 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#19 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#20 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#21 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#32 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000555555555095 in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option stopCheckName = BOUT.stop (default)
	Option datadir = mini (Command line)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: 965a3517-3f86-4c1a-b4ae-5d0e709d9606

Run started at  : Tue Dec 10 12:29:35 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option optionfile = BOUT.inp (default)
	Option datadir = mini (Command line)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       1.26e-02     0.1    0.0    0.7  151.4  -52.2
1.000e-01        253       2.04e-02    15.6    0.0    0.0   54.4   29.9
2.000e-01        152       1.52e-02    12.7    0.0    0.0   51.7   35.6
3.000e-01        150       1.49e-02    12.9    0.0    0.0   52.8   34.3
4.000e-01        155       1.49e-02    13.0    0.0    0.0   52.8   34.2
5.000e-01        139       1.47e-02    11.9    0.0    0.0   53.8   34.3
6.000e-01        157       1.51e-02    13.0    0.0    0.0   52.9   34.1
7.000e-01        120       1.44e-02    10.9    0.0    0.0   54.7   34.4
8.000e-01        146       1.47e-02    12.4    0.0    0.0   53.3   34.3
9.000e-01        153       1.50e-02    12.9    0.0    0.0   53.2   33.9
1.000e+00        162       1.51e-02    13.7    0.0    0.0   52.8   33.6
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Tue Dec 10 12:29:36 2024
Run time : 1 s

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd569 in sunLoggerIsOutputRank (logger=0x555555c8dc60, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:460
#3  0x00007ffff47b8df9 in SUNContext_Free (sunctx=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:290
#4  0x00007ffff7131036 in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/mpich-x86_64/sundials/sundials_context.hpp:55
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x00007ffff71310b5 in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x00007ffff73c1380 in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:123
#11 0x00007ffff73bca5a in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54496
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54450
#13 0x00007ffff73c2d23 in __pyx_pf_9libboutpp_12PhysicsModel_10_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56539
#14 __pyx_pw_9libboutpp_12PhysicsModel_11_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56474
#15 0x00007ffff73c38ee in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57562
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#17 0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#18 0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#22 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000555555555095 in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f743d6 in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x00007ffff73c4764 in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:58017
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#5  0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#10 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000555555555095 in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0x7fffc98746c0 (LWP 23161) exited]
[Thread 0x7fffc90736c0 (LWP 23162) exited]
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
Exception ignored in: 'libboutpp.PhysicsModelBase.__dealloc__'
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 23158) exited normally]
+ for i in {1..10}
+ PYTHONPATH=../../../../tools/pylib/:
+ gdb --batch --command=test.gdb python3
Breakpoint 1 (MPI_Comm_rank) pending.
Argument list to give program being debugged when it is started is "".
Note, however: in batch mode, arguments will be ignored!
Function "MPI_Comm_rank" not defined.
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
[New Thread 0x7fffc98746c0 (LWP 23172)]
[New Thread 0x7fffc90736c0 (LWP 23173)]

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f73bc1 in BoutInitialise (argc=@0x7fffffffc8a0: 3, argv=@0x7fffffffc878: 0x55555565f1f0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:160
#3  0x00007ffff73ccc57 in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
BOUT++ version 5.2.0
Revision: Unknown
Code compiled on Dec 10 2024 at 00:00:00

B.Dudson (University of York), M.Umansky (LLNL) 2007
Based on BOUT by Xueqiao Xu, 1999

Processor number: 0 of 1

pid: 23169

Compile-time options:
	Runtime error checking enabled, level 2
	Parallel NetCDF support disabled
	Metrics mode is 2D
	FFT support enabled
	Natural language support enabled
	LAPACK support enabled
	NetCDF support enabled (NetCDF4)
	ADIOS2 support disabled
	PETSc support enabled
	Pretty function name support enabled
	PVODE support enabled
	Score-P support disabled
	SLEPc support disabled
	SUNDIALS support enabled
	Backtrace in exceptions enabled
	Colour in logs enabled
	OpenMP parallelisation disabled, using 1 threads
	Extra debug output disabled
	Floating-point exceptions disabled
	Signal handling support enabled
	Field name tracking enabled
	Message stack enabled
	Compiled with flags : "-Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG"
	Command line options for this run : boutpp -d mini 
Reading options file mini/BOUT.inp
	Option datadir = mini (Command line)
	Option optionfile = BOUT.inp (default)
	Option settingsfile = BOUT.settings (default)
Writing options to file mini/BOUT.settings
	Option mesh:type = bout (default)

Getting grid data from options
	Option mesh:calcParallelSlices_on_communicate = 1 (default)
	Option mesh:maxregionblocksize = 64 (default)
	Option mesh:staggergrids = 0 (default)
	Option mesh:include_corner_cells = 1 (default)
	Option mesh:ddz:fft_filter = 0 (default)
	Option mesh:symmetricGlobalX = 1 (default)
	Option optionfile = BOUT.inp (default)
WARNING: The default of this option has changed in release 4.1.
If you want the old setting, you have to specify mesh:symmetricGlobalY=false in BOUT.inp
	Option mesh:symmetricGlobalY = 1 (default)
Loading mesh

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff70a537b in BoutMesh::load (this=0x555555c701a0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/mesh/impls/bout/boutmesh.cxx:453
#2  0x00007ffff6f73e56 in BoutInitialise (argc=@0x7fffffffc8a0: 3, argv=@0x7fffffffc878: 0x55555565f1f0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:209
#3  0x00007ffff73ccc57 in __pyx_pf_9libboutpp_init (__pyx_self=<optimized out>, __pyx_v_args=0x7ffff76a1040) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57142
#4  __pyx_pw_9libboutpp_1init (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56705
#5  0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#10 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#11 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#12 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#13 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#14 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#15 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#16 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#17 0x0000555555555095 in _start ()
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option mesh:n = 5 (mini/BOUT.inp)
	Option MXG = 1 (mini/BOUT.inp)
	Option mesh:nx = 7 (mini/BOUT.inp)
	Option mesh:ny = 1 (mini/BOUT.inp)
	Option mesh:nz = 1 (mini/BOUT.inp)
	Read nz from input grid file
	Grid size: 7 x 1 x 1
Variable 'MXG' not in mesh options. Setting to 0
	Option MXG = 1 (mini/BOUT.inp)
Variable 'MYG' not in mesh options. Setting to 0
	Option MYG = 0 (mini/BOUT.inp)
	Guard cells (x,y,z): 1, 0, 0
Variable 'ixseps1' not in mesh options. Setting to 7
Variable 'ixseps2' not in mesh options. Setting to 7
Variable 'jyseps1_1' not in mesh options. Setting to -1
Variable 'jyseps1_2' not in mesh options. Setting to 0
Variable 'jyseps2_1' not in mesh options. Setting to 0
Variable 'jyseps2_2' not in mesh options. Setting to 0
Variable 'ny_inner' not in mesh options. Setting to 0
Finding value for NXPE (ideal = 2.236068)
	Candidate value: 1
	 -> Good value
	Domain split (NXPE=1, NYPE=1) into domains (localNx=5, localNy=1)
	Option IncIntShear = 0 (default)
	Option periodicX = 0 (default)
	Option async_send = 0 (default)
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
	EQUILIBRIUM IS SINGLE NULL (SND) 
Connection between top of Y processor 0 and bottom of 0 in range 0 <= x < 7
=> This processor sending in up
=> This processor sending in down
WARNING adding connection: poloidal index -1 out of range
	MYPE_IN_CORE = true
	DXS = 7, DIN = 0. DOUT = -1
	UXS = 7, UIN = 0. UOUT = -1
	XIN = -1, XOUT = -1
	Twist-shift: DI UI 
	Option twistshift = 0 (default)
Variable 'ShiftAngle' not in mesh options. Setting to empty vector
Possible boundary regions are: core, sol, Boundary regions in this processor: core, sol, 
Constructing default regions
	Boundary region inner X
	Boundary region outer X
	Option mesh:extrapolate_x = 0 (default)
	Option mesh:extrapolate_y = 0 (default)
	Option mesh:dx = 1/n/2/pi (mini/BOUT.inp)
	Option mesh:n = 5 (mini/BOUT.inp)
Variable 'dy' not in mesh options. Setting to 1.000000e+00
	Option ZMIN = 0 (default)
	Option ZMAX = 1 (default)
Variable 'dz' not in mesh options. Setting to 6.283185e+00
	Option mesh:paralleltransform:type = identity (default)
Variable 'g11' not in mesh options. Setting to 1.000000e+00
Variable 'g22' not in mesh options. Setting to 1.000000e+00
Variable 'g33' not in mesh options. Setting to 1.000000e+00
Variable 'g12' not in mesh options. Setting to 0.000000e+00
Variable 'g13' not in mesh options. Setting to 0.000000e+00
Variable 'g23' not in mesh options. Setting to 0.000000e+00
	Local maximum error in diagonal inversion is 0.000000e+00
	Local maximum error in off-diagonal inversion is 0.000000e+00
Variable 'J' not in mesh options. Setting to 0.000000e+00
	WARNING: Jacobian 'J' not found. Calculating from metric tensor
Variable 'Bxy' not in mesh options. Setting to 0.000000e+00
	WARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor
Variable 'ShiftTorsion' not in mesh options. Setting to 0.000000e+00
	WARNING: No Torsion specified for zShift. Derivatives may not be correct
Calculating differential geometry terms
	Communicating connection terms
	Option non_uniform = 1 (default)
Variable 'd2x' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2x' not found. Calculating from dx
Variable 'd2y' not in mesh options. Setting to 0.000000e+00
	WARNING: differencing quantity 'd2y' not found. Calculating from dy
	done
	Option output:enabled = 1 (default)
	Option restart_files:enabled = 1 (default)
	Option datadir = mini (Command line)
	Option append = 0 (default)
	Option output:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7196b8d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719383f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff718a1e1 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x55555565dd80, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=this@entry=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718ffc1 in bout::OptionsIOFactory::createOutput (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_io.cxx:41
#11 0x00007ffff711fcad in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:73
#12 0x00007ffff73bcfa2 in PythonModel::PythonModel (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e647 in __Pyx_PyObject_Call (func=0x7fffc9c4b790, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffc9c4b790) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffc9c4b790, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be591 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option output:prefix = BOUT.dmp (user_default)
	Option output:path = mini (user_default)
	Option output:append = false (user_default)
	Option datadir = mini (Command line)
	Option restart_files:type = netcdf (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7196b8d in bout::OptionsNetCDF::OptionsNetCDF (this=<optimized out>, options=..., this=<optimized out>, options=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/options/options_netcdf.cxx:649
#3  0x00007ffff719383f in std::make_unique<bout::OptionsNetCDF, Options&> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#4  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}::operator()(Options&) const (__closure=<optimized out>, args#0=...) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#5  std::__invoke_impl<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(std::__invoke_other, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#6  std::__invoke_r<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >, Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&>(Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}&, Options&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#7  std::_Function_handler<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> > (Options&), Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::RegisterInFactory<bout::OptionsNetCDF>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options&)#1}>::_M_invoke(std::_Any_data const&, Options&) (__functor=..., __args#0=...) at /usr/include/c++/14/bits/std_function.h:291
#8  0x00007ffff718a1e1 in std::function<std::unique_ptr<bout::OptionsIO, std::default_delete<bout::OptionsIO> >(Options&)>::operator() (this=0x55555565dd80, __args#0=...) at /usr/include/c++/14/bits/std_function.h:591
#9  Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::create<Options&> (this=this@entry=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, name="netcdf") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#10 0x00007ffff718fcf5 in bout::OptionsIOFactory::createRestart (this=0x7ffff734a440 <Factory<bout::OptionsIO, bout::OptionsIOFactory, Options&>::getInstance()::instance>, optionsptr=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#11 0x00007ffff711fda5 in PhysicsModel::PhysicsModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/physics/physicsmodel.cxx:77
#12 0x00007ffff73bcfa2 in PythonModel::PythonModel (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:137
#13 __pyx_pf_9libboutpp_16PhysicsModelBase___init__ (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53452
#14 __pyx_pw_9libboutpp_16PhysicsModelBase_1__init__ (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53391
#15 0x00007ffff7c38fb0 in wrap_init () from /lib64/libpython3.13.so.1.0
#16 0x00007ffff740e647 in __Pyx_PyObject_Call (func=0x7fffc9c4b790, arg=0x7ffff7f0dfb8 <_PyRuntime+88248>, kw=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:86556
#17 __Pyx_PyObject_FastCallDict (kwargs=0x0, args=<optimized out>, _nargs=<optimized out>, func=0x7fffc9c4b790) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87339
#18 __Pyx_PyObject_FastCallDict(_object*, _object**, unsigned long, _object*) [clone .constprop.0] (func=0x7fffc9c4b790, args=<optimized out>, _nargs=<optimized out>, kwargs=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:87288
#19 0x00007ffff73be591 in __pyx_pf_9libboutpp_12PhysicsModel___init__ (__pyx_self=<optimized out>, __pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54974
#20 __pyx_pw_9libboutpp_12PhysicsModel_1__init__ (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54910
#21 0x00007ffff7b8539c in slot_tp_init () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b3b586 in _PyObject_MakeTpCall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()
	Option restart_files:prefix = BOUT.restart (user_default)
	Option restart_files:path = mini (user_default)
	Option restart_files:append = false (user_default)
	Option solver:type = cvode (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff7152e14 in Solver::Solver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:73
#3  0x00007ffff7131100 in CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#4  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#5  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#6  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#7  std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#8  std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#9  0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#10 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#11 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#12 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#13 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#14 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#15 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#16 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#17 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#18 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#29 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#30 0x0000555555555095 in _start ()
	Option solver:monitor_timestep = 0 (default)
	Option solver:save_repeat_run_id = 0 (default)
	Option solver:is_nonsplit_model_diffusive = 1 (default)
	Option solver:mms = 0 (default)
	Option solver:mms_initialise = 0 (default)
	Option nout = 10 (mini/BOUT.inp)
	Option solver:nout = 10 (default)
	Option timestep = 0.1 (mini/BOUT.inp)
	Option solver:output_step = 0.1 (default)
	Option solver:diagnose = 0 (default)
	Option solver:adams_moulton = 0 (default)
	Option solver:func_iter = 0 (default)
	Option solver:cvode_max_order = -1 (default)
	Option solver:cvode_stability_limit_detection = 0 (default)
	Option solver:atol = 1e-10 (mini/BOUT.inp)
	Option solver:rtol = 1e-08 (mini/BOUT.inp)
	Option solver:use_vector_abstol = 0 (default)
	Option solver:mxstep = 500 (default)
	Option solver:max_timestep = 0 (default)
	Option solver:min_timestep = 0 (default)
	Option solver:start_timestep = 0 (default)
	Option solver:mxorder = -1 (default)
	Option solver:max_nonlinear_iterations = 3 (default)
	Option solver:apply_positivity_constraints = 0 (default)
	Option solver:maxl = 5 (default)
	Option solver:use_precon = 0 (default)
	Option solver:rightprec = 0 (default)
	Option solver:use_jacobian = 0 (default)
	Option solver:cvode_nonlinear_convergence_coef = 0.1 (default)
	Option solver:cvode_linear_convergence_coef = 0.05 (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bce09 in sunLoggerIsOutputRank (logger=0x555555c8dc60, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Create (comm=comm@entry=-2080374784, output_rank=output_rank@entry=0, logger_ptr=logger_ptr@entry=0x7fffffffc400) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:155
#3  0x00007ffff47bd627 in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:178
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bceb9 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetErrorFilename (logger=0x555555c8dc60, error_filename=error_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:205
#3  0x00007ffff47bd63b in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:185
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bcfb9 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetWarningFilename (logger=0x555555c8dc60, warning_filename=warning_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:236
#3  0x00007ffff47bd67c in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:187
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd0f1 in sunLoggerIsOutputRank (logger=<optimized out>, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_SetDebugFilename (logger=<optimized out>, debug_filename=debug_filename@entry=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:296
#3  0x00007ffff47bd68f in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:189
#4  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#5  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#6  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#7  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#8  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#9  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#10 std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#11 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#12 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#13 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#14 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#15 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#16 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#17 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#18 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#19 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#20 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#21 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#22 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#32 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#33 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#34 0x0000555555555095 in _start ()

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd091 in SUNLogger_SetInfoFilename () at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:262
#2  0x00007ffff47bd6a2 in SUNLogger_CreateFromEnv (comm=comm@entry=-2080374784, logger_out=logger_out@entry=0x7fffffffc458) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:191
#3  0x00007ffff47b8ac4 in SUNContext_Create (comm=-2080374784, sunctx_out=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:58
#4  0x00007ffff71317c3 in sundials::Context::Context (this=0x555555b7da08, comm=-2080374784) at /usr/include/c++/14/bits/unique_ptr.h:193
#5  createSUNContext (comm=<optimized out>, comm=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/sundials_backports.hxx:60
#6  CvodeSolver::CvodeSolver (this=<optimized out>, opts=<optimized out>, this=<optimized out>, opts=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:134
#7  0x00007ffff713fe80 in std::make_unique<CvodeSolver, Options*> () at /usr/include/c++/14/bits/unique_ptr.h:1077
#8  Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}::operator()(Options*&&) const (__closure=<optimized out>, args#0=@0x7fffffffc670: 0x555555c7a9e0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:233
#9  std::__invoke_impl<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(std::__invoke_other, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__f=...) at /usr/include/c++/14/bits/invoke.h:61
#10 std::__invoke_r<std::unique_ptr<Solver, std::default_delete<Solver> >, Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*>(Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}&, Options*&&) (__fn=...) at /usr/include/c++/14/bits/invoke.h:116
#11 std::_Function_handler<std::unique_ptr<Solver, std::default_delete<Solver> > (Options*), Factory<Solver, SolverFactory, Options*>::RegisterInFactory<CvodeSolver>::RegisterInFactory(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)::{lambda(Options*&&)#1}>::_M_invoke(std::_Any_data const&, Options*&&) (__functor=..., __args#0=@0x7fffffffc670: 0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:291
#12 0x00007ffff71cd1b0 in std::function<std::unique_ptr<Solver, std::default_delete<Solver> >(Options*)>::operator() (this=0x55555565e520, __args#0=0x555555c7a9e0) at /usr/include/c++/14/bits/std_function.h:591
#13 Factory<Solver, SolverFactory, Options*>::create<Options*>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Options*&&) const [clone .isra.0] (this=0x7ffff7349be0 <Factory<Solver, SolverFactory, Options*>::getInstance()::instance>, name="cvode") at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/include/bout/generic_factory.hxx:166
#14 0x00007ffff715e84e in Factory<Solver, SolverFactory, Options*>::create (this=<optimized out>, options=<optimized out>) at /usr/include/c++/14/bits/allocator.h:182
#15 Solver::create (opts=opts@entry=0x0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/solver.cxx:1006
#16 0x00007ffff73bfa26 in PythonModel::pyinit (this=0x555555c858b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:139
#17 __pyx_pf_9libboutpp_16PhysicsModelBase_2solve (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53597
#18 __pyx_pw_9libboutpp_16PhysicsModelBase_3solve (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:53551
#19 0x00007ffff73beda4 in __pyx_pf_9libboutpp_12PhysicsModel_2solve (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55750
#20 __pyx_pw_9libboutpp_12PhysicsModel_3solve (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:55106
#21 0x00007ffff7b3efd7 in PyObject_Vectorcall () from /lib64/libpython3.13.so.1.0
#22 0x00007ffff7b54e2f in _PyEval_EvalFrameDefault () from /lib64/libpython3.13.so.1.0
#23 0x00007ffff7c20e7b in PyEval_EvalCode () from /lib64/libpython3.13.so.1.0
#24 0x00007ffff7c429a0 in run_eval_code_obj () from /lib64/libpython3.13.so.1.0
#25 0x00007ffff7c3cdc3 in run_mod () from /lib64/libpython3.13.so.1.0
#26 0x00007ffff7c5d466 in pyrun_file () from /lib64/libpython3.13.so.1.0
#27 0x00007ffff7c5c56f in _PyRun_SimpleFileObject () from /lib64/libpython3.13.so.1.0
#28 0x00007ffff7c5f4f1 in _PyRun_AnyFileObject () from /lib64/libpython3.13.so.1.0
#29 0x00007ffff7c55ae8 in Py_RunMain () from /lib64/libpython3.13.so.1.0
#30 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#31 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#32 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#33 0x0000555555555095 in _start ()
Setting up output (experimental output) file
	Option restart = 0 (default)
	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
Setting boundary for variable dens
	core region: 	Option all:bndry_all = dirichlet (default)

	sol region: 	Option all:bndry_all = dirichlet (default)

	Option input:transform_from_field_aligned = true (default)
	Option input:max_recursion_depth = 0 (default)
	Option dens:function = sin(2*pi*x) (mini/BOUT.inp)
	Option all:scale = 1 (default)
	Option all:evolve_bndry = 0 (default)
	Option dens:evolve_bndry = 0 (default)
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
Variable 'grid_id' not in mesh options. Setting to 
Variable 'hypnotoad_version' not in mesh options. Setting to 
Variable 'hypnotoad_git_hash' not in mesh options. Setting to 
Variable 'hypnotoad_git_diff' not in mesh options. Setting to 
Variable 'hypnotoad_geqdsk_filename' not in mesh options. Setting to 
	Option wall_limit = -1 (default)
	Option stopCheck = 0 (default)
	Option stopCheckName = BOUT.stop (default)
	Option datadir = mini (Command line)
Solver running for 10 outputs with output timestep of 1.000000e-01
Initialising solver
Initialising SUNDIALS' CVODE solver
	3d fields = 1, 2d fields = 0 neq=5, local_N=5
	Using BDF method
	Using Newton iteration
	No preconditioning
	Using difference quotient approximation for Jacobian
Running simulation

Run ID: afff4f61-aa23-4a12-83af-bffc643b5deb

Run started at  : Tue Dec 10 12:29:46 2024
	Option restart = false (default)
	Option append = false (default)
	Option dump_on_restart = 1 (default)
	Option input:validate = 0 (default)
	Option input:error_on_unused_options = 1 (default)
	Option optionfile = BOUT.inp (default)
	Option datadir = mini (Command line)
Sim Time  |  RHS evals  | Wall Time |  Calc    Inv   Comm    I/O   SOLVER

0.000e+00          1       1.26e-02     0.2    0.0    0.6  152.3  -53.2
1.000e-01        253       2.07e-02    15.5    0.0    0.0   54.6   29.9
2.000e-01        152       1.51e-02    13.0    0.0    0.0   52.0   35.0
3.000e-01        150       1.50e-02    12.7    0.0    0.0   53.1   34.1
4.000e-01        155       1.49e-02    13.6    0.0    0.0   52.4   34.0
5.000e-01        139       1.47e-02    12.1    0.0    0.0   53.4   34.5
6.000e-01        157       1.47e-02    13.5    0.0    0.0   52.7   33.8
7.000e-01        120       1.43e-02    10.5    0.0    0.0   54.8   34.7
8.000e-01        146       1.47e-02    12.9    0.0    0.0   52.9   34.2
9.000e-01        153       1.48e-02    12.8    0.0    0.0   53.1   34.1
1.000e+00        162       1.48e-02    13.8    0.0    0.0   52.8   33.4
-  Step 10 of 10. Elapsed 0:00:00.2 ETA 0:00:-0.0
Run finished at  : Tue Dec 10 12:29:46 2024
Run time : 0 s

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff47bd569 in sunLoggerIsOutputRank (logger=0x555555c8dc60, rank_ref=0x0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:100
#2  SUNLogger_Destroy (logger_ptr=<optimized out>) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_logger.c:460
#3  0x00007ffff47b8df9 in SUNContext_Free (sunctx=0x555555c8efe0) at /usr/src/debug/sundials-7.1.1-1.fc42.x86_64/buildmpich_dir/src/sundials/sundials_context.c:290
#4  0x00007ffff7131036 in sundials::Context::~Context (this=<optimized out>, this=<optimized out>) at /usr/include/mpich-x86_64/sundials/sundials_context.hpp:55
#5  CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#6  0x00007ffff71310b5 in CvodeSolver::~CvodeSolver (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/solver/impls/cvode/cvode.cxx:165
#7  0x00007ffff73c1380 in std::default_delete<Solver>::operator() (this=<optimized out>, __ptr=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:93
#8  std::unique_ptr<Solver, std::default_delete<Solver> >::~unique_ptr (this=<optimized out>, this=<optimized out>) at /usr/include/c++/14/bits/unique_ptr.h:399
#9  PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:123
#10 PythonModel::~PythonModel (this=<optimized out>, this=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/helper.h:123
#11 0x00007ffff73bca5a in __pyx_pf_9libboutpp_16PhysicsModelBase_12_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54496
#12 __pyx_pw_9libboutpp_16PhysicsModelBase_13_boutpp_dealloc (__pyx_v_self=0x7ffff74d15b0, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:54450
#13 0x00007ffff73c2d23 in __pyx_pf_9libboutpp_12PhysicsModel_10_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_v_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56539
#14 __pyx_pw_9libboutpp_12PhysicsModel_11_boutpp_dealloc (__pyx_self=<optimized out>, __pyx_args=<optimized out>, __pyx_nargs=<optimized out>, __pyx_kwds=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56474
#15 0x00007ffff73c38ee in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57562
#16 __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#17 0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#18 0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#19 0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#20 0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#21 0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#22 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#23 0x0000555555555095 in _start ()
	Option datadir = mini (Command line)
	Option settingsfile = BOUT.settings (default)

Thread 1 "python3" hit Breakpoint 1.1, 0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#0  0x00007ffff4005c58 in PMPI_Comm_rank () from /usr/lib64/mpich/lib/libmpi.so.12
#1  0x00007ffff716559b in BoutComm::rank () at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/sys/boutcomm.cxx:51
#2  0x00007ffff6f743d6 in BoutFinalise (write_settings=write_settings@entry=true) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/src/bout++.cxx:747
#3  0x00007ffff73c4764 in __pyx_pf_9libboutpp_2finalise (__pyx_self=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:58017
#4  __pyx_pw_9libboutpp_3finalise (__pyx_self=<optimized out>, unused=<optimized out>) at /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57303
#5  0x00007ffff7c59cd7 in atexit_callfuncs () from /lib64/libpython3.13.so.1.0
#6  0x00007ffff7c3f6bc in _Py_Finalize.constprop.0 () from /lib64/libpython3.13.so.1.0
#7  0x00007ffff7c558ae in Py_RunMain () from /lib64/libpython3.13.so.1.0
#8  0x00007ffff7c1017c in Py_BytesMain () from /lib64/libpython3.13.so.1.0
#9  0x00007ffff78140c8 in __libc_start_call_main () from /lib64/libc.so.6
#10 0x00007ffff781418b in __libc_start_main_impl () from /lib64/libc.so.6
#11 0x0000555555555095 in _start ()
Writing options to file mini/BOUT.settings
	Option time_report:show = 0 (default)
[Thread 0x7fffc98746c0 (LWP 23172) exited]
[Thread 0x7fffc90736c0 (LWP 23173) exited]
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
Exception ignored in: 'libboutpp.PhysicsModelBase.__dealloc__'
Traceback (most recent call last):
  File "libboutpp.pyx", line 2217, in libboutpp.PhysicsModelBase._boutpp_dealloc
AttributeError: 'super' object has no attribute '_boutpp_dealloc'
HDF5-DIAG: Error detected in HDF5 (1.14.5):
  #000: ../../src/H5FD.c line 368 in H5FDunregister(): not a file driver
    major: Invalid arguments to routine
    minor: Inappropriate type
[Inferior 1 (process 23169) exited normally]
+ popd
+ popd
~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/build_mpich ~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f
~/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/mpich/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/mpich-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/mpich-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64
+ eval 'unset LD_LIBRARY_PATH;
unset MPI_COMPILER;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset MPI_MAN;
unset MPI_PYTHON_SITEARCH;
unset _LMFILES_;
unset LOADEDMODULES;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_FORTRAN_MOD_DIR;
unset MPI_HOME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SYSCONFIG;
unset MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_PYTHON2_SITEARCH;
unset MPI_LIB;
PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset LD_LIBRARY_PATH
++ unset MPI_COMPILER
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset MPI_MAN
++ unset MPI_PYTHON_SITEARCH
++ unset _LMFILES_
++ unset LOADEDMODULES
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_FORTRAN_MOD_DIR
++ unset MPI_HOME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SYSCONFIG
++ unset MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_PYTHON2_SITEARCH
++ unset MPI_LIB
++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ RPM_EC=0
Processing files: bout++-mpich-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64
++ jobs -p
+ exit 0
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.SEyKCZ
+ umask 022
+ cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ cd BOUT++-v5.2.0.dev574+ge3f21cd2f
+ DOCDIR=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++-mpich
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++-mpich
+ cp -pr /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/README.md /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++-mpich
+ cp -pr /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/CITATION.bib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++-mpich
+ cp -pr /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/CITATION.cff /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++-mpich
+ cp -pr /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/CHANGELOG.md /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++-mpich
+ cp -pr /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/CONTRIBUTING.md /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++-mpich
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.K3SH9g
+ umask 022
+ cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ cd BOUT++-v5.2.0.dev574+ge3f21cd2f
+ LICENSEDIR=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/licenses/bout++-mpich
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/licenses/bout++-mpich
+ cp -pr /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/LICENSE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/licenses/bout++-mpich
+ cp -pr /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/LICENSE.GPL /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/licenses/bout++-mpich
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bout++-mpich = 5.2.0.dev574+ge3f21cd2f-1.fc42 bout++-mpich(x86-64) = 5.2.0.dev574+ge3f21cd2f-1.fc42 bundled(libpvode) libbout++.so.5.1.0()(64bit)(mpich-x86_64) libpvode.so.1.0.0()(64bit)(mpich-x86_64) libpvpre.so.1.0.0()(64bit)(mpich-x86_64)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash /usr/bin/python3 /usr/bin/sh libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libfftw3.so.3()(64bit) libflexiblas.so.3()(64bit) libfmt.so.11()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libmpi.so.12()(64bit)(mpich-x86_64) libnetcdf.so.19()(64bit) libnetcdf_c++4.so.1()(64bit) libpetsc.so.3.22()(64bit)(mpich-x86_64) libpvode.so.1.0.0()(64bit)(mpich-x86_64) libpvpre.so.1.0.0()(64bit)(mpich-x86_64) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsundials_arkode.so.6()(64bit)(mpich-x86_64) libsundials_core.so.7()(64bit)(mpich-x86_64) libsundials_cvode.so.7()(64bit)(mpich-x86_64) libsundials_ida.so.7()(64bit)(mpich-x86_64) libsundials_nvecparallel.so.7()(64bit)(mpich-x86_64) rtld(GNU_HASH)
Recommends: environment-modules python3-boutdata python3-boututils python3-xbout
Processing files: bout++-mpich-devel-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64
Provides: bout++-mpich-devel = 5.2.0.dev574+ge3f21cd2f-1.fc42 bout++-mpich-devel(x86-64) = 5.2.0.dev574+ge3f21cd2f-1.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: fftw-devel flexiblas-devel gcc-c++ gettext-devel hdf5-devel hdf5-mpich-devel make mpark-variant-devel mpich-devel netcdf-cxx4-devel netcdf-devel petsc-mpich-devel sundials-devel sundials-mpich-devel zlib-devel
Processing files: python3-bout++-mpich-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64
Provides: libboutpp.cpython-313-x86_64-linux-gnu.so()(64bit)(mpich-x86_64) python-bout++-mpich = 5.2.0.dev574+ge3f21cd2f-1.fc42 python3-bout++-mpich = 5.2.0.dev574+ge3f21cd2f-1.fc42 python3-bout++-mpich(x86-64) = 5.2.0.dev574+ge3f21cd2f-1.fc42 python3.13-bout++-mpich = 5.2.0.dev574+ge3f21cd2f-1.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libbout++.so.5.1.0()(64bit)(mpich-x86_64) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libfmt.so.11()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.13 rtld(GNU_HASH)
Recommends: python3-xbout
Processing files: bout++-openmpi-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.W7x7Bw
+ umask 022
+ cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ cd BOUT++-v5.2.0.dev574+ge3f21cd2f
+ DOCDIR=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++-openmpi
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++-openmpi
+ cp -pr /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/README.md /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++-openmpi
+ cp -pr /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/CITATION.bib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++-openmpi
+ cp -pr /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/CITATION.cff /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++-openmpi
+ cp -pr /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/CHANGELOG.md /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++-openmpi
+ cp -pr /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/CONTRIBUTING.md /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/bout++-openmpi
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.SS9kGG
+ umask 022
+ cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ cd BOUT++-v5.2.0.dev574+ge3f21cd2f
+ LICENSEDIR=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/licenses/bout++-openmpi
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/licenses/bout++-openmpi
+ cp -pr /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/LICENSE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/licenses/bout++-openmpi
+ cp -pr /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/LICENSE.GPL /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/licenses/bout++-openmpi
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bout++-openmpi = 5.2.0.dev574+ge3f21cd2f-1.fc42 bout++-openmpi(x86-64) = 5.2.0.dev574+ge3f21cd2f-1.fc42 bundled(libpvode) libbout++.so.5.1.0()(64bit)(openmpi-x86_64) libpvode.so.1.0.0()(64bit)(openmpi-x86_64) libpvpre.so.1.0.0()(64bit)(openmpi-x86_64)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash /usr/bin/python3 /usr/bin/sh libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libfftw3.so.3()(64bit) libflexiblas.so.3()(64bit) libfmt.so.11()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libmpi.so.40()(64bit)(openmpi-x86_64) libnetcdf.so.19()(64bit) libnetcdf_c++4.so.1()(64bit) libpetsc.so.3.22()(64bit)(openmpi-x86_64) libpvode.so.1.0.0()(64bit)(openmpi-x86_64) libpvpre.so.1.0.0()(64bit)(openmpi-x86_64) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsundials_arkode.so.6()(64bit)(openmpi-x86_64) libsundials_core.so.7()(64bit)(openmpi-x86_64) libsundials_cvode.so.7()(64bit)(openmpi-x86_64) libsundials_ida.so.7()(64bit)(openmpi-x86_64) libsundials_nvecparallel.so.7()(64bit)(openmpi-x86_64) rtld(GNU_HASH)
Recommends: environment-modules python3-boutdata python3-boututils python3-xbout
Processing files: bout++-openmpi-devel-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64
Provides: bout++-openmpi-devel = 5.2.0.dev574+ge3f21cd2f-1.fc42 bout++-openmpi-devel(x86-64) = 5.2.0.dev574+ge3f21cd2f-1.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: fftw-devel flexiblas-devel gcc-c++ gettext-devel hdf5-devel hdf5-openmpi-devel make mpark-variant-devel netcdf-cxx4-devel netcdf-devel openmpi-devel petsc-openmpi-devel sundials-devel sundials-openmpi-devel zlib-devel
Processing files: python3-bout++-openmpi-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64
Provides: libboutpp.cpython-313-x86_64-linux-gnu.so()(64bit)(openmpi-x86_64) python-bout++-openmpi = 5.2.0.dev574+ge3f21cd2f-1.fc42 python3-bout++-openmpi = 5.2.0.dev574+ge3f21cd2f-1.fc42 python3-bout++-openmpi(x86-64) = 5.2.0.dev574+ge3f21cd2f-1.fc42 python3.13-bout++-openmpi = 5.2.0.dev574+ge3f21cd2f-1.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libbout++.so.5.1.0()(64bit)(openmpi-x86_64) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libfmt.so.11()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.13 rtld(GNU_HASH)
Recommends: python3-xbout
Processing files: bout++-common-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64
Provides: bout++-common = 5.2.0.dev574+ge3f21cd2f-1.fc42 bout++-common(x86-64) = 5.2.0.dev574+ge3f21cd2f-1.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: python3-bout++-5.2.0.dev574+ge3f21cd2f-1.fc42.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.8sHeDp
+ umask 022
+ cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ cd BOUT++-v5.2.0.dev574+ge3f21cd2f
+ DOCDIR=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/python3-bout++
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/python3-bout++
+ cp -pr /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/README.md /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/python3-bout++
+ cp -pr /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/CITATION.bib /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/python3-bout++
+ cp -pr /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/CITATION.cff /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/python3-bout++
+ cp -pr /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/CHANGELOG.md /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/python3-bout++
+ cp -pr /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/CONTRIBUTING.md /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/doc/python3-bout++
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Ppjasf
+ umask 022
+ cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ cd BOUT++-v5.2.0.dev574+ge3f21cd2f
+ LICENSEDIR=/builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/licenses/python3-bout++
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/licenses/python3-bout++
+ cp -pr /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/LICENSE /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/licenses/python3-bout++
+ cp -pr /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BOUT++-v5.2.0.dev574+ge3f21cd2f/LICENSE.GPL /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT/usr/share/licenses/python3-bout++
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: python-bout++ = 5.2.0.dev574+ge3f21cd2f-1.fc42 python3-bout++ = 5.2.0.dev574+ge3f21cd2f-1.fc42 python3.13-bout++ = 5.2.0.dev574+ge3f21cd2f-1.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: python3-boutdata python3-boututils python3-matplotlib python3-scipy
Processing files: bout++-doc-5.2.0.dev574+ge3f21cd2f-1.fc42.noarch
Provides: bout++-doc = 5.2.0.dev574+ge3f21cd2f-1.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: bout++-debugsource-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64
Provides: bout++-debugsource = 5.2.0.dev574+ge3f21cd2f-1.fc42 bout++-debugsource(x86-64) = 5.2.0.dev574+ge3f21cd2f-1.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: bout++-debuginfo-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64
Provides: bout++-debuginfo = 5.2.0.dev574+ge3f21cd2f-1.fc42 bout++-debuginfo(x86-64) = 5.2.0.dev574+ge3f21cd2f-1.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bout++-debugsource(x86-64) = 5.2.0.dev574+ge3f21cd2f-1.fc42
Processing files: bout++-mpich-debuginfo-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64
Provides: bout++-mpich-debuginfo = 5.2.0.dev574+ge3f21cd2f-1.fc42 bout++-mpich-debuginfo(x86-64) = 5.2.0.dev574+ge3f21cd2f-1.fc42 debuginfo(build-id) = 345912d1f477323d591b9cfd8b0a7d5f6352ae2d debuginfo(build-id) = b40a472b47946730a84e36daa188e000836d10ef debuginfo(build-id) = e2b0c1d1876ae79b8c18c337d32ede49a27997dc
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bout++-debugsource(x86-64) = 5.2.0.dev574+ge3f21cd2f-1.fc42
Processing files: python3-bout++-mpich-debuginfo-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64
Provides: debuginfo(build-id) = e07a6473dfa19f886f803faad2780ebd5eb11370 python-bout++-mpich-debuginfo = 5.2.0.dev574+ge3f21cd2f-1.fc42 python3-bout++-mpich-debuginfo = 5.2.0.dev574+ge3f21cd2f-1.fc42 python3-bout++-mpich-debuginfo(x86-64) = 5.2.0.dev574+ge3f21cd2f-1.fc42 python3.13-bout++-mpich-debuginfo = 5.2.0.dev574+ge3f21cd2f-1.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bout++-debugsource(x86-64) = 5.2.0.dev574+ge3f21cd2f-1.fc42
Processing files: bout++-openmpi-debuginfo-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64
Provides: bout++-openmpi-debuginfo = 5.2.0.dev574+ge3f21cd2f-1.fc42 bout++-openmpi-debuginfo(x86-64) = 5.2.0.dev574+ge3f21cd2f-1.fc42 debuginfo(build-id) = 6c1c903d1575e5ca89f0ab991967680a49da318f debuginfo(build-id) = 7e19b11f5cae2ba162f5e30c19982c9c666be17c debuginfo(build-id) = bdfed5c908a190f33985d0c50b1980c6b741bf9e
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bout++-debugsource(x86-64) = 5.2.0.dev574+ge3f21cd2f-1.fc42
Processing files: python3-bout++-openmpi-debuginfo-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64
Provides: debuginfo(build-id) = 4d4f4d5f5f901d2923336d256e2eaa52a84085b2 python-bout++-openmpi-debuginfo = 5.2.0.dev574+ge3f21cd2f-1.fc42 python3-bout++-openmpi-debuginfo = 5.2.0.dev574+ge3f21cd2f-1.fc42 python3-bout++-openmpi-debuginfo(x86-64) = 5.2.0.dev574+ge3f21cd2f-1.fc42 python3.13-bout++-openmpi-debuginfo = 5.2.0.dev574+ge3f21cd2f-1.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bout++-debugsource(x86-64) = 5.2.0.dev574+ge3f21cd2f-1.fc42
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build/BUILDROOT
Wrote: /builddir/build/RPMS/bout++-debugsource-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-bout++-openmpi-debuginfo-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-bout++-mpich-debuginfo-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/bout++-debuginfo-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/bout++-doc-5.2.0.dev574+ge3f21cd2f-1.fc42.noarch.rpm
Wrote: /builddir/build/RPMS/bout++-openmpi-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/bout++-openmpi-devel-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/bout++-mpich-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-bout++-openmpi-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/bout++-mpich-devel-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-bout++-5.2.0.dev574+ge3f21cd2f-1.fc42.noarch.rpm
Wrote: /builddir/build/RPMS/bout++-common-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-bout++-mpich-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/bout++-mpich-debuginfo-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/bout++-openmpi-debuginfo-5.2.0.dev574+ge3f21cd2f-1.fc42.x86_64.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.9XLzzI
+ umask 022
+ cd /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ test -d /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ rm -rf /builddir/build/BUILD/bout++-5.2.0.dev574+ge3f21cd2f-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild bout++-5.2.0.dev574+ge3f21cd2f-1.fc42.src.rpm
Finish: build phase for bout++-5.2.0.dev574+ge3f21cd2f-1.fc42.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1733832619.107295/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/bout++-5.2.0.dev574+ge3f21cd2f-1.fc42.src.rpm) Config(child) 19 minutes 38 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "bout++-debugsource",
            "epoch": null,
            "version": "5.2.0.dev574+ge3f21cd2f",
            "release": "1.fc42",
            "arch": "x86_64"
        },
        {
            "name": "python3-bout++-openmpi",
            "epoch": null,
            "version": "5.2.0.dev574+ge3f21cd2f",
            "release": "1.fc42",
            "arch": "x86_64"
        },
        {
            "name": "python3-bout++",
            "epoch": null,
            "version": "5.2.0.dev574+ge3f21cd2f",
            "release": "1.fc42",
            "arch": "noarch"
        },
        {
            "name": "bout++-debuginfo",
            "epoch": null,
            "version": "5.2.0.dev574+ge3f21cd2f",
            "release": "1.fc42",
            "arch": "x86_64"
        },
        {
            "name": "bout++-mpich-debuginfo",
            "epoch": null,
            "version": "5.2.0.dev574+ge3f21cd2f",
            "release": "1.fc42",
            "arch": "x86_64"
        },
        {
            "name": "bout++-mpich",
            "epoch": null,
            "version": "5.2.0.dev574+ge3f21cd2f",
            "release": "1.fc42",
            "arch": "x86_64"
        },
        {
            "name": "bout++-common",
            "epoch": null,
            "version": "5.2.0.dev574+ge3f21cd2f",
            "release": "1.fc42",
            "arch": "x86_64"
        },
        {
            "name": "python3-bout++-openmpi-debuginfo",
            "epoch": null,
            "version": "5.2.0.dev574+ge3f21cd2f",
            "release": "1.fc42",
            "arch": "x86_64"
        },
        {
            "name": "bout++-openmpi-devel",
            "epoch": null,
            "version": "5.2.0.dev574+ge3f21cd2f",
            "release": "1.fc42",
            "arch": "x86_64"
        },
        {
            "name": "python3-bout++-mpich",
            "epoch": null,
            "version": "5.2.0.dev574+ge3f21cd2f",
            "release": "1.fc42",
            "arch": "x86_64"
        },
        {
            "name": "python3-bout++-mpich-debuginfo",
            "epoch": null,
            "version": "5.2.0.dev574+ge3f21cd2f",
            "release": "1.fc42",
            "arch": "x86_64"
        },
        {
            "name": "bout++-mpich-devel",
            "epoch": null,
            "version": "5.2.0.dev574+ge3f21cd2f",
            "release": "1.fc42",
            "arch": "x86_64"
        },
        {
            "name": "bout++",
            "epoch": null,
            "version": "5.2.0.dev574+ge3f21cd2f",
            "release": "1.fc42",
            "arch": "src"
        },
        {
            "name": "bout++-doc",
            "epoch": null,
            "version": "5.2.0.dev574+ge3f21cd2f",
            "release": "1.fc42",
            "arch": "noarch"
        },
        {
            "name": "bout++-openmpi-debuginfo",
            "epoch": null,
            "version": "5.2.0.dev574+ge3f21cd2f",
            "release": "1.fc42",
            "arch": "x86_64"
        },
        {
            "name": "bout++-openmpi",
            "epoch": null,
            "version": "5.2.0.dev574+ge3f21cd2f",
            "release": "1.fc42",
            "arch": "x86_64"
        }
    ]
}
RPMResults finished