Warning: Permanently added '174.129.44.135' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/10342130-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 1.8 PID: 12418 Logging PID: 12420 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 10342130, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '60aecd6c18a1eaa63aaafa3c03f8f166117933d1', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/davidsch/testing-all/bout++', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'bout++', 'package_version': '5.2.0-11', 'project_dirname': 'testing-all', 'project_name': 'testing-all', 'project_owner': 'davidsch', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/davidsch/testing-all/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'davidsch/testing-all--davidsch', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'davidsch', 'tags': [], 'task_id': '10342130-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/davidsch/testing-all/bout++ /var/lib/copr-rpmbuild/workspace/workdir-s0_dha0s/bout++ --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/davidsch/testing-all/bout++', '/var/lib/copr-rpmbuild/workspace/workdir-s0_dha0s/bout++', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-s0_dha0s/bout++'... Running: git checkout 60aecd6c18a1eaa63aaafa3c03f8f166117933d1 -- cmd: ['git', 'checkout', '60aecd6c18a1eaa63aaafa3c03f8f166117933d1', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-s0_dha0s/bout++ rc: 0 stdout: stderr: Note: switching to '60aecd6c18a1eaa63aaafa3c03f8f166117933d1'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 60aecd6 automatic import of bout++ Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-s0_dha0s/bout++ rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading BOUT++-v5.2.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o BOUT++-v5.2.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/davidsch/testing-all/bout++/BOUT++-v5.2.0.tar.gz/md5/a12adf302b00dbb7d05e4c71cb47c17e/BOUT++-v5.2.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 14.3M 100 14.3M 0 0 289M 0 --:--:-- --:--:-- --:--:-- 293M INFO: Reading stdout from command: md5sum BOUT++-v5.2.0.tar.gz tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-s0_dha0s/bout++/bout++.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-s0_dha0s/bout++ --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1776423486.131948 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.7 starting (python version = 3.14.2, NVR = mock-6.7-1.fc43), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-s0_dha0s/bout++/bout++.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-s0_dha0s/bout++ --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1776423486.131948 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-s0_dha0s/bout++/bout++.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.7 INFO: Mock Version: 6.7 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1776423486.131948/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-ba7417f2-f385-42a3-97d5-9967b1a6e15c INFO: Checking that 10ae92b70e17995451edfbaa2a63b4ed89dbf1056b7ad2fecc63160853e84c2d image matches host's architecture INFO: Copy content of container 10ae92b70e17995451edfbaa2a63b4ed89dbf1056b7ad2fecc63160853e84c2d to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1776423486.131948/root INFO: mounting 10ae92b70e17995451edfbaa2a63b4ed89dbf1056b7ad2fecc63160853e84c2d with podman image mount INFO: image 10ae92b70e17995451edfbaa2a63b4ed89dbf1056b7ad2fecc63160853e84c2d as /var/lib/containers/storage/overlay/ac34d1f45dc38e15160d14c1bb2154de16919c2a9bd5646a12c9a6ddc72038ef/merged INFO: umounting image 10ae92b70e17995451edfbaa2a63b4ed89dbf1056b7ad2fecc63160853e84c2d (/var/lib/containers/storage/overlay/ac34d1f45dc38e15160d14c1bb2154de16919c2a9bd5646a12c9a6ddc72038ef/merged) with podman image umount INFO: Removing image mock-bootstrap-ba7417f2-f385-42a3-97d5-9967b1a6e15c INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1776423486.131948/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.1-5.fc45.x86_64 rpm-sequoia-1.10.1-1.fc45.x86_64 dnf5-5.4.0.0-6.fc45.x86_64 dnf5-plugins-5.4.0.0-6.fc45.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Copr repository 100% | 20.8 KiB/s | 7.7 KiB | 00m00s fedora 100% | 26.4 MiB/s | 21.5 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 0:5.3.9-3.fc44 fedora 8.5 MiB bzip2 x86_64 0:1.0.8-23.fc44 fedora 95.0 KiB coreutils x86_64 0:9.10-3.fc45 fedora 5.6 MiB cpio x86_64 0:2.15-9.fc44 fedora 1.1 MiB diffutils x86_64 0:3.12-5.fc44 fedora 1.6 MiB fedora-release-common noarch 0:45-0.5 fedora 4.2 KiB findutils x86_64 1:4.10.0-7.fc44 fedora 1.9 MiB gawk x86_64 0:5.4.0-2.fc45 fedora 2.2 MiB glibc-minimal-langpack x86_64 0:2.43.9000-11.fc45 fedora 0.0 B grep x86_64 0:3.12-3.fc44 fedora 1.0 MiB gzip x86_64 0:1.14-2.fc44 fedora 401.6 KiB info x86_64 0:7.3-1.fc45 fedora 372.4 KiB patch x86_64 0:2.8-4.fc44 fedora 226.6 KiB redhat-rpm-config noarch 0:344-1.fc45 fedora 183.7 KiB rpm-build x86_64 0:6.0.1-5.fc45 fedora 294.6 KiB sed x86_64 0:4.9-8.fc45 fedora 857.2 KiB shadow-utils x86_64 2:4.19.3-1.fc45 fedora 4.0 MiB tar x86_64 2:1.35-8.fc44 fedora 3.0 MiB unzip x86_64 0:6.0-69.fc44 fedora 445.8 KiB util-linux x86_64 0:2.42-7.fc45 fedora 3.6 MiB which x86_64 0:2.23-4.fc44 fedora 83.4 KiB xz x86_64 1:5.8.3-1.fc45 fedora 1.4 MiB Installing dependencies: R-srpm-macros noarch 0:1.3.7-1.fc45 fedora 3.5 KiB add-determinism x86_64 0:0.7.3-2.fc45 fedora 2.2 MiB alternatives x86_64 0:1.33-5.fc44 fedora 62.1 KiB ansible-srpm-macros noarch 0:1-20.1.fc44 fedora 35.7 KiB audit-libs x86_64 0:4.1.4-1.fc45 fedora 390.5 KiB binutils x86_64 0:2.46.50-7.fc45 fedora 28.2 MiB build-reproducibility-srpm-macros noarch 0:0.7.3-2.fc45 fedora 1.2 KiB bzip2-libs x86_64 0:1.0.8-23.fc44 fedora 80.5 KiB ca-certificates noarch 0:2025.2.80_v9.0.304-7.fc45 fedora 2.7 MiB cmake-srpm-macros noarch 0:4.3.0-1.fc45 fedora 524.0 B coreutils-common x86_64 0:9.10-3.fc45 fedora 10.7 MiB crypto-policies noarch 0:20251128-3.git19878fe.fc44 fedora 132.6 KiB curl x86_64 0:8.20.0~rc2-1.fc45 fedora 482.7 KiB cyrus-sasl-lib x86_64 0:2.1.28-35.fc44 fedora 2.3 MiB debugedit x86_64 0:5.3-2.fc45 fedora 220.8 KiB dwz x86_64 0:0.16-3.fc44 fedora 290.9 KiB ed x86_64 0:1.22.5-2.fc45 fedora 149.7 KiB efi-srpm-macros noarch 0:6-6.fc44 fedora 40.2 KiB elfutils x86_64 0:0.194-5.fc45 fedora 2.9 MiB elfutils-debuginfod-client x86_64 0:0.194-5.fc45 fedora 83.7 KiB elfutils-default-yama-scope noarch 0:0.194-5.fc45 fedora 1.8 KiB elfutils-libelf x86_64 0:0.194-5.fc45 fedora 1.1 MiB elfutils-libs x86_64 0:0.194-5.fc45 fedora 715.3 KiB erlang-srpm-macros noarch 0:0.3.11-1.fc45 fedora 1.9 KiB fedora-gpg-keys noarch 0:45-0.1 fedora 133.4 KiB fedora-release noarch 0:45-0.5 fedora 0.0 B fedora-release-identity-basic noarch 0:45-0.5 fedora 664.0 B fedora-repos noarch 0:45-0.1 fedora 4.9 KiB fedora-repos-rawhide noarch 0:45-0.1 fedora 2.2 KiB file x86_64 0:5.47-1.fc45 fedora 101.2 KiB file-libs x86_64 0:5.47-1.fc45 fedora 12.2 MiB filesystem x86_64 0:3.18-56.fc45 fedora 112.0 B filesystem-srpm-macros noarch 0:3.18-56.fc45 fedora 38.2 KiB fonts-srpm-macros noarch 1:5.0.0-3.fc45 fedora 55.8 KiB forge-srpm-macros noarch 0:0.4.0-4.fc44 fedora 38.9 KiB fpc-srpm-macros noarch 0:1.3-16.fc44 fedora 144.0 B gap-srpm-macros noarch 0:2-2.fc44 fedora 2.1 KiB gdb-minimal x86_64 0:17.1-5.fc45 fedora 14.2 MiB gdbm-libs x86_64 1:1.23-11.fc44 fedora 129.6 KiB ghc-srpm-macros noarch 0:1.10-1.fc44 fedora 792.0 B glibc x86_64 0:2.43.9000-11.fc45 fedora 7.0 MiB glibc-common x86_64 0:2.43.9000-11.fc45 fedora 1.0 MiB glibc-gconv-extra x86_64 0:2.43.9000-11.fc45 fedora 7.7 MiB gmp x86_64 1:6.3.0-5.fc44 fedora 815.2 KiB gnat-srpm-macros noarch 0:7-2.fc44 fedora 1.0 KiB gnulib-l10n noarch 0:20241231-2.fc44 fedora 655.0 KiB gnupg2 x86_64 0:2.4.9-5.fc44 fedora 6.5 MiB gnupg2-dirmngr x86_64 0:2.4.9-5.fc44 fedora 633.9 KiB gnupg2-gpg-agent x86_64 0:2.4.9-5.fc44 fedora 682.5 KiB gnupg2-gpgconf x86_64 0:2.4.9-5.fc44 fedora 249.7 KiB gnupg2-keyboxd x86_64 0:2.4.9-5.fc44 fedora 201.2 KiB gnupg2-verify x86_64 0:2.4.9-5.fc44 fedora 360.3 KiB gnutls x86_64 0:3.8.12-1.fc45 fedora 3.7 MiB go-srpm-macros noarch 0:3.8.0-2.fc44 fedora 61.9 KiB gpgverify noarch 0:2.2-4.fc44 fedora 8.7 KiB ima-evm-utils-libs x86_64 0:1.6.2-10.fc45 fedora 60.6 KiB jansson x86_64 0:2.14-4.fc44 fedora 88.9 KiB java-srpm-macros noarch 0:1-8.fc44 fedora 870.0 B json-c x86_64 0:0.18-8.fc44 fedora 82.6 KiB kernel-srpm-macros noarch 0:1.0-29.fc45 fedora 1.9 KiB keyutils-libs x86_64 0:1.6.3-7.fc44 fedora 54.2 KiB krb5-libs x86_64 0:1.22.2-5.fc45 fedora 2.4 MiB libacl x86_64 0:2.3.2-6.fc44 fedora 35.8 KiB libarchive x86_64 0:3.8.6-1.fc45 fedora 995.2 KiB libassuan x86_64 0:2.5.7-5.fc44 fedora 163.8 KiB libattr x86_64 0:2.5.2-8.fc44 fedora 24.3 KiB libblkid x86_64 0:2.42-7.fc45 fedora 282.2 KiB libbrotli x86_64 0:1.2.0-3.fc44 fedora 865.0 KiB libcap x86_64 0:2.78-1.fc45 fedora 212.1 KiB libcap-ng x86_64 0:0.9.3-1.fc45 fedora 68.8 KiB libcbor x86_64 0:0.13.0-2.fc44 fedora 79.5 KiB libcom_err x86_64 0:1.47.4-1.fc45 fedora 63.0 KiB libcurl x86_64 0:8.20.0~rc2-1.fc45 fedora 1.0 MiB libeconf x86_64 0:0.7.9-3.fc44 fedora 64.8 KiB libevent x86_64 0:2.1.12-17.fc44 fedora 978.7 KiB libfdisk x86_64 0:2.42-7.fc45 fedora 388.2 KiB libffi x86_64 0:3.5.2-2.fc44 fedora 87.7 KiB libfido2 x86_64 0:1.16.0-5.fc44 fedora 246.4 KiB libfsverity x86_64 0:1.7-1.fc45 fedora 28.4 KiB libgcc x86_64 0:16.0.1-0.10.fc45 fedora 270.7 KiB libgcrypt x86_64 0:1.12.2-1.fc45 fedora 1.7 MiB libgomp x86_64 0:16.0.1-0.10.fc45 fedora 577.2 KiB libgpg-error x86_64 0:1.59-1.fc45 fedora 946.4 KiB libidn2 x86_64 0:2.3.8-3.fc44 fedora 556.4 KiB libksba x86_64 0:1.6.8-1.fc45 fedora 421.9 KiB liblastlog2 x86_64 0:2.42-7.fc45 fedora 41.6 KiB libmount x86_64 0:2.42-7.fc45 fedora 400.8 KiB libnghttp2 x86_64 0:1.68.1-1.fc45 fedora 166.2 KiB libnghttp3 x86_64 0:1.15.0-1.fc44 fedora 159.2 KiB libpkgconf x86_64 0:2.5.1-1.fc45 fedora 90.1 KiB libpsl x86_64 0:0.21.5-7.fc44 fedora 76.3 KiB libselinux x86_64 0:3.10-1.fc44 fedora 201.0 KiB libselinux-utils x86_64 0:3.10-1.fc44 fedora 305.7 KiB libsemanage x86_64 0:3.10-1.fc44 fedora 312.3 KiB libsepol x86_64 0:3.10-1.fc44 fedora 870.0 KiB libsmartcols x86_64 0:2.42-7.fc45 fedora 192.4 KiB libssh x86_64 0:0.12.0-1.fc45 fedora 719.1 KiB libssh-config noarch 0:0.12.0-1.fc45 fedora 277.0 B libstdc++ x86_64 0:16.0.1-0.10.fc45 fedora 2.9 MiB libtasn1 x86_64 0:4.21.0-1.fc45 fedora 180.6 KiB libtool-ltdl x86_64 0:2.5.4-10.fc44 fedora 70.0 KiB libunistring x86_64 0:1.1-11.fc44 fedora 1.7 MiB libusb1 x86_64 0:1.0.29-5.fc44 fedora 175.2 KiB libuuid x86_64 0:2.42-7.fc45 fedora 37.2 KiB libverto x86_64 0:0.3.2-12.fc44 fedora 25.3 KiB libxcrypt x86_64 0:4.5.2-3.fc44 fedora 293.2 KiB libxml2 x86_64 0:2.12.10-6.fc44 fedora 1.8 MiB libzstd x86_64 0:1.5.7-5.fc44 fedora 956.1 KiB linkdupes x86_64 0:0.7.3-2.fc45 fedora 780.9 KiB lua-libs x86_64 0:5.5.0-1.fc45 fedora 297.9 KiB lua-srpm-macros noarch 0:1-17.fc44 fedora 1.3 KiB lz4-libs x86_64 0:1.10.0-4.fc44 fedora 157.3 KiB mpfr x86_64 0:4.2.2-3.fc44 fedora 849.1 KiB ncurses-base noarch 0:6.6-1.fc44 fedora 329.7 KiB ncurses-libs x86_64 0:6.6-1.fc44 fedora 968.9 KiB nettle x86_64 0:3.10.1-3.fc44 fedora 794.3 KiB ngtcp2 x86_64 0:1.21.0-1.fc45 fedora 330.2 KiB ngtcp2-crypto-ossl x86_64 0:1.21.0-1.fc45 fedora 51.6 KiB npth x86_64 0:1.8-4.fc44 fedora 49.5 KiB ocaml-srpm-macros noarch 0:11-3.fc44 fedora 1.9 KiB openblas-srpm-macros noarch 0:2-21.fc44 fedora 112.0 B openldap x86_64 0:2.6.13-1.fc45 fedora 669.9 KiB openssl-libs x86_64 1:3.5.5-2.fc45 fedora 9.2 MiB p11-kit x86_64 0:0.26.2-1.fc45 fedora 2.6 MiB p11-kit-trust x86_64 0:0.26.2-1.fc45 fedora 478.3 KiB package-notes-srpm-macros noarch 0:0.17-3.fc45 fedora 1.6 KiB pam-libs x86_64 0:1.7.2-1.fc44 fedora 130.5 KiB pcre2 x86_64 0:10.47-1.fc44.1 fedora 718.6 KiB pcre2-syntax noarch 0:10.47-1.fc44.1 fedora 281.9 KiB perl-srpm-macros noarch 0:1-61.fc44 fedora 861.0 B pkgconf x86_64 0:2.5.1-1.fc45 fedora 92.7 KiB pkgconf-m4 noarch 0:2.5.1-1.fc45 fedora 14.3 KiB pkgconf-pkg-config x86_64 0:2.5.1-1.fc45 fedora 989.0 B policycoreutils x86_64 0:3.10-3.fc45 fedora 884.5 KiB popt x86_64 0:1.19-10.fc44 fedora 132.6 KiB publicsuffix-list-dafsa noarch 0:20260116-1.fc44 fedora 70.4 KiB pyproject-srpm-macros noarch 0:1.19.0-1.fc45 fedora 1.9 KiB python-srpm-macros noarch 0:3.14-12.fc45 fedora 51.6 KiB qt5-srpm-macros noarch 0:5.15.18-2.fc44 fedora 500.0 B qt6-srpm-macros noarch 0:6.10.3-1.fc45 fedora 472.0 B readline x86_64 0:8.3-4.fc44 fedora 519.5 KiB redhat-systemd-presets noarch 0:102-1.fc45 fedora 1.0 KiB redhat-systemd-presets-common noarch 0:102-1.fc45 fedora 16.6 KiB rpm x86_64 0:6.0.1-5.fc45 fedora 3.1 MiB rpm-build-libs x86_64 0:6.0.1-5.fc45 fedora 276.3 KiB rpm-libs x86_64 0:6.0.1-5.fc45 fedora 961.2 KiB rpm-plugin-selinux x86_64 0:6.0.1-5.fc45 fedora 11.9 KiB rpm-sequoia x86_64 0:1.10.1-1.fc45 fedora 2.4 MiB rpm-sign-libs x86_64 0:6.0.1-5.fc45 fedora 39.6 KiB rust-srpm-macros noarch 0:28.4-3.fc44 fedora 5.5 KiB selinux-policy noarch 0:43.6-2.fc45 fedora 32.0 KiB selinux-policy-targeted noarch 0:43.6-2.fc45 fedora 18.6 MiB setup noarch 0:2.15.0-29.fc45 fedora 724.9 KiB sqlite-libs x86_64 0:3.52.0-1.fc45 fedora 1.6 MiB systemd-libs x86_64 0:260.1-2.fc45 fedora 2.5 MiB systemd-standalone-sysusers x86_64 0:260.1-2.fc45 fedora 841.2 KiB tpm2-tss x86_64 0:4.1.3-9.fc44 fedora 1.6 MiB tree-sitter-srpm-macros noarch 0:0.4.2-2.fc44 fedora 8.3 KiB util-linux-core x86_64 0:2.42-7.fc45 fedora 1.5 MiB xxhash-libs x86_64 0:0.8.3-4.fc44 fedora 94.0 KiB xz-libs x86_64 1:5.8.3-1.fc45 fedora 217.7 KiB zig-srpm-macros noarch 0:1-8.fc44 fedora 1.3 KiB zip x86_64 0:3.0-45.fc44 fedora 698.0 KiB zlib-ng-compat x86_64 0:2.3.3-5.fc45 fedora 165.6 KiB zstd x86_64 0:1.5.7-5.fc44 fedora 502.4 KiB Installing groups: Buildsystem building group Transaction Summary: Installing: 187 packages Total size of inbound packages is 70 MiB. Need to download 70 MiB. After this operation, 226 MiB extra will be used (install 226 MiB, remove 0 B). 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rpm-build-0:6.0.1-5.fc45.x86_ 100% | 45.5 MiB/s | 139.9 KiB | 00m00s [ 15/187] sed-0:4.9-8.fc45.x86_64 100% | 77.9 MiB/s | 319.0 KiB | 00m00s [ 16/187] tar-2:1.35-8.fc44.x86_64 100% | 106.0 MiB/s | 868.2 KiB | 00m00s [ 17/187] shadow-utils-2:4.19.3-1.fc45. 100% | 108.1 MiB/s | 1.3 MiB | 00m00s [ 18/187] unzip-0:6.0-69.fc44.x86_64 100% | 21.7 MiB/s | 199.6 KiB | 00m00s [ 19/187] which-0:2.23-4.fc44.x86_64 100% | 13.7 MiB/s | 42.2 KiB | 00m00s [ 20/187] xz-1:5.8.3-1.fc45.x86_64 100% | 213.3 MiB/s | 655.2 KiB | 00m00s [ 21/187] gawk-0:5.4.0-2.fc45.x86_64 100% | 83.4 MiB/s | 1.2 MiB | 00m00s [ 22/187] util-linux-0:2.42-7.fc45.x86_ 100% | 74.6 MiB/s | 1.3 MiB | 00m00s [ 23/187] filesystem-0:3.18-56.fc45.x86 100% | 101.8 MiB/s | 1.8 MiB | 00m00s [ 24/187] ncurses-libs-0:6.6-1.fc44.x86 100% | 67.2 MiB/s | 344.1 KiB | 00m00s [ 25/187] glibc-0:2.43.9000-11.fc45.x86 100% | 171.5 MiB/s | 2.4 MiB | 00m00s [ 26/187] bzip2-libs-0:1.0.8-23.fc44.x8 100% | 5.3 MiB/s | 43.8 KiB | 00m00s [ 27/187] gmp-1:6.3.0-5.fc44.x86_64 100% | 63.0 MiB/s | 322.5 KiB | 00m00s [ 28/187] coreutils-common-0:9.10-3.fc4 100% | 152.4 MiB/s | 2.1 MiB | 00m00s [ 29/187] libacl-0:2.3.2-6.fc44.x86_64 100% | 3.5 MiB/s | 24.8 KiB | 00m00s [ 30/187] libattr-0:2.5.2-8.fc44.x86_64 100% | 5.8 MiB/s | 17.9 KiB | 00m00s [ 31/187] libselinux-0:3.10-1.fc44.x86_ 100% | 49.8 MiB/s | 102.0 KiB | 00m00s [ 32/187] libcap-0:2.78-1.fc45.x86_64 100% | 43.7 MiB/s | 89.4 KiB | 00m00s [ 33/187] fedora-repos-0:45-0.1.noarch 100% | 3.0 MiB/s | 9.2 KiB | 00m00s [ 34/187] systemd-libs-0:260.1-2.fc45.x 100% | 123.6 MiB/s | 886.2 KiB | 00m00s [ 35/187] redhat-systemd-presets-0:102- 100% | 1.6 MiB/s | 8.3 KiB | 00m00s [ 36/187] openssl-libs-1:3.5.5-2.fc45.x 100% | 161.4 MiB/s | 2.7 MiB | 00m00s [ 37/187] glibc-common-0:2.43.9000-11.f 100% | 47.2 MiB/s | 387.0 KiB | 00m00s [ 38/187] pcre2-0:10.47-1.fc44.1.x86_64 100% | 45.2 MiB/s | 277.7 KiB | 00m00s [ 39/187] ed-0:1.22.5-2.fc45.x86_64 100% | 41.7 MiB/s | 85.4 KiB | 00m00s [ 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qt6-srpm-macros-0:6.10.3-1.fc 100% | 4.5 MiB/s | 9.2 KiB | 00m00s [ 67/187] rust-srpm-macros-0:28.4-3.fc4 100% | 5.4 MiB/s | 11.1 KiB | 00m00s [ 68/187] tree-sitter-srpm-macros-0:0.4 100% | 6.6 MiB/s | 13.5 KiB | 00m00s [ 69/187] zig-srpm-macros-0:1-8.fc44.no 100% | 8.6 MiB/s | 8.8 KiB | 00m00s [ 70/187] rpm-0:6.0.1-5.fc45.x86_64 100% | 94.1 MiB/s | 578.3 KiB | 00m00s [ 71/187] debugedit-0:5.3-2.fc45.x86_64 100% | 28.8 MiB/s | 88.5 KiB | 00m00s [ 72/187] zip-0:3.0-45.fc44.x86_64 100% | 51.6 MiB/s | 264.4 KiB | 00m00s [ 73/187] elfutils-libelf-0:0.194-5.fc4 100% | 66.8 MiB/s | 205.1 KiB | 00m00s [ 74/187] elfutils-0:0.194-5.fc45.x86_6 100% | 81.5 MiB/s | 584.4 KiB | 00m00s [ 75/187] libarchive-0:3.8.6-1.fc45.x86 100% | 86.4 MiB/s | 442.6 KiB | 00m00s [ 76/187] libgcc-0:16.0.1-0.10.fc45.x86 100% | 24.7 MiB/s | 126.3 KiB | 00m00s [ 77/187] libstdc++-0:16.0.1-0.10.fc45. 100% | 185.1 MiB/s | 947.6 KiB | 00m00s [ 78/187] popt-0:1.19-10.fc44.x86_64 100% | 16.3 MiB/s | 66.9 KiB | 00m00s [ 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MiB/s | 82.8 KiB | 00m00s [143/187] gnutls-0:3.8.12-1.fc45.x86_64 100% | 140.2 MiB/s | 1.4 MiB | 00m00s [144/187] libtasn1-0:4.21.0-1.fc45.x86_ 100% | 37.1 MiB/s | 76.0 KiB | 00m00s [145/187] libidn2-0:2.3.8-3.fc44.x86_64 100% | 42.9 MiB/s | 175.5 KiB | 00m00s [146/187] libunistring-0:1.1-11.fc44.x8 100% | 133.7 MiB/s | 547.8 KiB | 00m00s [147/187] p11-kit-0:0.26.2-1.fc45.x86_6 100% | 90.5 MiB/s | 555.9 KiB | 00m00s [148/187] nettle-0:3.10.1-3.fc44.x86_64 100% | 52.3 MiB/s | 428.0 KiB | 00m00s [149/187] cyrus-sasl-lib-0:2.1.28-35.fc 100% | 130.3 MiB/s | 800.7 KiB | 00m00s [150/187] libtool-ltdl-0:2.5.4-10.fc44. 100% | 12.1 MiB/s | 37.0 KiB | 00m00s [151/187] libevent-0:2.1.12-17.fc44.x86 100% | 56.1 MiB/s | 287.4 KiB | 00m00s [152/187] libffi-0:3.5.2-2.fc44.x86_64 100% | 20.7 MiB/s | 42.4 KiB | 00m00s [153/187] gdbm-libs-1:1.23-11.fc44.x86_ 100% | 28.7 MiB/s | 58.8 KiB | 00m00s [154/187] alternatives-0:1.33-5.fc44.x8 100% | 13.3 MiB/s | 40.8 KiB | 00m00s [155/187] jansson-0:2.14-4.fc44.x86_64 100% | 11.5 MiB/s | 47.1 KiB | 00m00s [156/187] pkgconf-pkg-config-0:2.5.1-1. 100% | 4.6 MiB/s | 9.5 KiB | 00m00s [157/187] pkgconf-0:2.5.1-1.fc45.x86_64 100% | 15.8 MiB/s | 48.7 KiB | 00m00s [158/187] pkgconf-m4-0:2.5.1-1.fc45.noa 100% | 4.5 MiB/s | 13.8 KiB | 00m00s [159/187] libpkgconf-0:2.5.1-1.fc45.x86 100% | 8.3 MiB/s | 42.7 KiB | 00m00s [160/187] p11-kit-trust-0:0.26.2-1.fc45 100% | 28.6 MiB/s | 146.4 KiB | 00m00s [161/187] fedora-release-0:45-0.5.noarc 100% | 2.0 MiB/s | 12.6 KiB | 00m00s [162/187] systemd-standalone-sysusers-0 100% | 51.3 MiB/s | 367.4 KiB | 00m00s [163/187] binutils-0:2.46.50-7.fc45.x86 100% | 171.7 MiB/s | 6.2 MiB | 00m00s [164/187] xxhash-libs-0:0.8.3-4.fc44.x8 100% | 3.4 MiB/s | 41.2 KiB | 00m00s [165/187] fedora-release-identity-basic 100% | 3.3 MiB/s | 13.4 KiB | 00m00s [166/187] libcurl-0:8.20.0~rc2-1.fc45.x 100% | 76.1 MiB/s | 467.4 KiB | 00m00s [167/187] gdb-minimal-0:17.1-5.fc45.x86 100% | 175.4 MiB/s | 4.7 MiB | 00m00s [168/187] libbrotli-0:1.2.0-3.fc44.x86_ 100% | 56.6 MiB/s | 347.8 KiB | 00m00s [169/187] krb5-libs-0:1.22.2-5.fc45.x86 100% | 78.7 MiB/s | 805.5 KiB | 00m00s [170/187] libnghttp2-0:1.68.1-1.fc45.x8 100% | 37.4 MiB/s | 76.6 KiB | 00m00s [171/187] libnghttp3-0:1.15.0-1.fc44.x8 100% | 36.1 MiB/s | 73.9 KiB | 00m00s [172/187] libpsl-0:0.21.5-7.fc44.x86_64 100% | 31.9 MiB/s | 65.3 KiB | 00m00s [173/187] libssh-0:0.12.0-1.fc45.x86_64 100% | 95.6 MiB/s | 293.7 KiB | 00m00s [174/187] ngtcp2-0:1.21.0-1.fc45.x86_64 100% | 50.8 MiB/s | 156.0 KiB | 00m00s [175/187] ngtcp2-crypto-ossl-0:1.21.0-1 100% | 13.5 MiB/s | 27.6 KiB | 00m00s [176/187] keyutils-libs-0:1.6.3-7.fc44. 100% | 15.4 MiB/s | 31.5 KiB | 00m00s [177/187] libcom_err-0:1.47.4-1.fc45.x8 100% | 13.0 MiB/s | 26.6 KiB | 00m00s [178/187] libverto-0:0.3.2-12.fc44.x86_ 100% | 6.9 MiB/s | 21.1 KiB | 00m00s [179/187] publicsuffix-list-dafsa-0:202 100% | 19.6 MiB/s | 60.3 KiB | 00m00s [180/187] libfido2-0:1.16.0-5.fc44.x86_ 100% | 51.0 MiB/s | 104.5 KiB | 00m00s [181/187] libssh-config-0:0.12.0-1.fc45 100% | 4.6 MiB/s | 9.4 KiB | 00m00s [182/187] libcbor-0:0.13.0-2.fc44.x86_6 100% | 17.6 MiB/s | 36.0 KiB | 00m00s [183/187] selinux-policy-0:43.6-2.fc45. 100% | 35.5 MiB/s | 72.8 KiB | 00m00s [184/187] policycoreutils-0:3.10-3.fc45 100% | 63.9 MiB/s | 261.7 KiB | 00m00s [185/187] libselinux-utils-0:3.10-1.fc4 100% | 23.4 MiB/s | 119.6 KiB | 00m00s [186/187] rpm-plugin-selinux-0:6.0.1-5. 100% | 3.7 MiB/s | 19.1 KiB | 00m00s [187/187] selinux-policy-targeted-0:43. 100% | 243.7 MiB/s | 6.8 MiB | 00m00s -------------------------------------------------------------------------------- [187/187] Total 100% | 196.0 MiB/s | 70.0 MiB | 00m00s Running transaction Importing OpenPGP key 0xF577861E: UserID : "Fedora (45) " Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary The key was successfully imported. Importing OpenPGP key 0xF577861E: UserID : "Fedora (45) " Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary The key was successfully imported. Importing OpenPGP key 0x6D9F90A6: UserID : "Fedora (44) " Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. Importing OpenPGP key 0x91211FCE: UserID : "Fedora (46) " Fingerprint: D924B10D3E810DABDD8B56B596E7E91491211FCE From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-46-primary The key was successfully imported. [ 1/189] Verify package files 100% | 636.0 B/s | 187.0 B | 00m00s [ 2/189] Prepare transaction 100% | 2.9 KiB/s | 187.0 B | 00m00s [ 3/189] Installing libgcc-0:16.0.1-0. 100% | 266.0 MiB/s | 272.4 KiB | 00m00s [ 4/189] Installing redhat-systemd-pre 100% | 0.0 B/s | 1.5 KiB | 00m00s [ 5/189] Installing redhat-systemd-pre 100% | 0.0 B/s | 17.8 KiB | 00m00s [ 6/189] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 7/189] Installing publicsuffix-list- 100% | 0.0 B/s | 71.1 KiB | 00m00s [ 8/189] Installing fedora-release-ide 100% | 0.0 B/s | 920.0 B | 00m00s [ 9/189] Installing fedora-gpg-keys-0: 100% | 44.5 MiB/s | 182.1 KiB | 00m00s [ 10/189] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 11/189] Installing fedora-repos-0:45- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 12/189] Installing fedora-release-com 100% | 7.3 MiB/s | 7.4 KiB | 00m00s [ 13/189] Installing fedora-release-0:4 100% | 12.1 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-29.fc45.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-29.fc45.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 14/189] Installing setup-0:2.15.0-29. 100% | 35.7 MiB/s | 730.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 15/189] Installing filesystem-0:3.18- 100% | 2.5 MiB/s | 289.4 KiB | 00m00s [ 16/189] Installing pkgconf-m4-0:2.5.1 100% | 0.0 B/s | 14.7 KiB | 00m00s [ 17/189] Installing pcre2-syntax-0:10. 100% | 277.7 MiB/s | 284.3 KiB | 00m00s [ 18/189] Installing gnulib-l10n-0:2024 100% | 161.6 MiB/s | 661.9 KiB | 00m00s [ 19/189] Installing coreutils-common-0 100% | 356.2 MiB/s | 10.7 MiB | 00m00s [ 20/189] Installing ncurses-base-0:6.6 100% | 86.7 MiB/s | 355.3 KiB | 00m00s [ 21/189] Installing bash-0:5.3.9-3.fc4 100% | 223.2 MiB/s | 8.5 MiB | 00m00s [ 22/189] Installing glibc-common-0:2.4 100% | 44.8 MiB/s | 1.0 MiB | 00m00s [ 23/189] Installing glibc-gconv-extra- 100% | 267.6 MiB/s | 7.8 MiB | 00m00s [ 24/189] Installing glibc-0:2.43.9000- 100% | 158.9 MiB/s | 7.0 MiB | 00m00s [ 25/189] Installing ncurses-libs-0:6.6 100% | 238.1 MiB/s | 975.4 KiB | 00m00s [ 26/189] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 27/189] Installing zlib-ng-compat-0:2 100% | 162.5 MiB/s | 166.4 KiB | 00m00s [ 28/189] Installing bzip2-libs-0:1.0.8 100% | 79.7 MiB/s | 81.6 KiB | 00m00s [ 29/189] Installing libgpg-error-0:1.5 100% | 44.3 MiB/s | 952.3 KiB | 00m00s [ 30/189] Installing libstdc++-0:16.0.1 100% | 364.8 MiB/s | 2.9 MiB | 00m00s [ 31/189] Installing libassuan-0:2.5.7- 100% | 161.8 MiB/s | 165.7 KiB | 00m00s [ 32/189] Installing libgcrypt-0:1.12.2 100% | 331.7 MiB/s | 1.7 MiB | 00m00s [ 33/189] Installing readline-0:8.3-4.f 100% | 254.7 MiB/s | 521.6 KiB | 00m00s [ 34/189] Installing gmp-1:6.3.0-5.fc44 100% | 266.1 MiB/s | 817.5 KiB | 00m00s [ 35/189] Installing systemd-libs-0:260 100% | 363.9 MiB/s | 2.5 MiB | 00m00s [ 36/189] Installing xz-libs-1:5.8.3-1. 100% | 213.7 MiB/s | 218.8 KiB | 00m00s [ 37/189] Installing libuuid-0:2.42-7.f 100% | 0.0 B/s | 38.2 KiB | 00m00s [ 38/189] Installing libzstd-0:1.5.7-5. 100% | 311.6 MiB/s | 957.4 KiB | 00m00s [ 39/189] Installing elfutils-libelf-0: 100% | 376.3 MiB/s | 1.1 MiB | 00m00s [ 40/189] Installing popt-0:1.19-10.fc4 100% | 68.0 MiB/s | 139.3 KiB | 00m00s [ 41/189] Installing npth-0:1.8-4.fc44. 100% | 0.0 B/s | 50.6 KiB | 00m00s [ 42/189] Installing libblkid-0:2.42-7. 100% | 276.6 MiB/s | 283.2 KiB | 00m00s [ 43/189] Installing libsepol-0:3.10-1. 100% | 283.5 MiB/s | 871.0 KiB | 00m00s [ 44/189] Installing sqlite-libs-0:3.52 100% | 320.6 MiB/s | 1.6 MiB | 00m00s [ 45/189] Installing gnupg2-gpgconf-0:2 100% | 12.9 MiB/s | 251.8 KiB | 00m00s [ 46/189] Installing libattr-0:2.5.2-8. 100% | 0.0 B/s | 25.2 KiB | 00m00s [ 47/189] Installing libacl-0:2.3.2-6.f 100% | 0.0 B/s | 36.6 KiB | 00m00s [ 48/189] Installing pcre2-0:10.47-1.fc 100% | 351.6 MiB/s | 720.0 KiB | 00m00s [ 49/189] Installing libselinux-0:3.10- 100% | 197.5 MiB/s | 202.3 KiB | 00m00s [ 50/189] Installing grep-0:3.12-3.fc44 100% | 45.6 MiB/s | 1.0 MiB | 00m00s [ 51/189] Installing sed-0:4.9-8.fc45.x 100% | 40.2 MiB/s | 865.4 KiB | 00m00s [ 52/189] Installing findutils-1:4.10.0 100% | 81.3 MiB/s | 1.9 MiB | 00m00s [ 53/189] Installing libxcrypt-0:4.5.2- 100% | 144.5 MiB/s | 295.9 KiB | 00m00s [ 54/189] Installing libtasn1-0:4.21.0- 100% | 178.2 MiB/s | 182.4 KiB | 00m00s [ 55/189] Installing libunistring-0:1.1 100% | 346.9 MiB/s | 1.7 MiB | 00m00s [ 56/189] Installing libidn2-0:2.3.8-3. 100% | 54.9 MiB/s | 562.6 KiB | 00m00s [ 57/189] Installing crypto-policies-0: 100% | 30.8 MiB/s | 157.7 KiB | 00m00s [ 58/189] Installing xz-1:5.8.3-1.fc45. 100% | 56.2 MiB/s | 1.4 MiB | 00m00s [ 59/189] Installing libmount-0:2.42-7. 100% | 196.2 MiB/s | 401.9 KiB | 00m00s [ 60/189] Installing gnupg2-verify-0:2. 100% | 18.6 MiB/s | 361.7 KiB | 00m00s [ 61/189] Installing dwz-0:0.16-3.fc44. 100% | 15.0 MiB/s | 292.3 KiB | 00m00s [ 62/189] Installing mpfr-0:4.2.2-3.fc4 100% | 276.9 MiB/s | 850.8 KiB | 00m00s [ 63/189] Installing gawk-0:5.4.0-2.fc4 100% | 92.7 MiB/s | 2.2 MiB | 00m00s [ 64/189] Installing libksba-0:1.6.8-1. 100% | 207.2 MiB/s | 424.4 KiB | 00m00s [ 65/189] Installing unzip-0:6.0-69.fc4 100% | 23.1 MiB/s | 449.3 KiB | 00m00s [ 66/189] Installing file-libs-0:5.47-1 100% | 609.5 MiB/s | 12.2 MiB | 00m00s [ 67/189] Installing file-0:5.47-1.fc45 100% | 5.6 MiB/s | 102.6 KiB | 00m00s [ 68/189] Installing diffutils-0:3.12-5 100% | 68.4 MiB/s | 1.6 MiB | 00m00s [ 69/189] Installing libeconf-0:0.7.9-3 100% | 64.9 MiB/s | 66.4 KiB | 00m00s [ 70/189] Installing libcap-ng-0:0.9.3- 100% | 69.0 MiB/s | 70.6 KiB | 00m00s [ 71/189] Installing audit-libs-0:4.1.4 100% | 191.9 MiB/s | 393.0 KiB | 00m00s [ 72/189] Installing pam-libs-0:1.7.2-1 100% | 129.8 MiB/s | 132.9 KiB | 00m00s [ 73/189] Installing libcap-0:2.78-1.fc 100% | 11.2 MiB/s | 217.2 KiB | 00m00s [ 74/189] Installing libsemanage-0:3.10 100% | 153.4 MiB/s | 314.1 KiB | 00m00s [ 75/189] Installing libsmartcols-0:2.4 100% | 188.9 MiB/s | 193.4 KiB | 00m00s [ 76/189] Installing lua-libs-0:5.5.0-1 100% | 292.4 MiB/s | 299.4 KiB | 00m00s [ 77/189] Installing json-c-0:0.18-8.fc 100% | 81.9 MiB/s | 83.9 KiB | 00m00s [ 78/189] Installing libffi-0:3.5.2-2.f 100% | 87.0 MiB/s | 89.1 KiB | 00m00s [ 79/189] Installing p11-kit-0:0.26.2-1 100% | 96.1 MiB/s | 2.6 MiB | 00m00s [ 80/189] Installing alternatives-0:1.3 100% | 3.5 MiB/s | 63.6 KiB | 00m00s [ 81/189] Installing p11-kit-trust-0:0. 100% | 17.4 MiB/s | 480.0 KiB | 00m00s [ 82/189] Installing ngtcp2-0:1.21.0-1. 100% | 162.0 MiB/s | 331.7 KiB | 00m00s [ 83/189] Installing openssl-libs-1:3.5 100% | 353.4 MiB/s | 9.2 MiB | 00m00s [ 84/189] Installing coreutils-0:9.10-3 100% | 138.8 MiB/s | 5.7 MiB | 00m00s [ 85/189] Installing ca-certificates-0: 100% | 1.8 MiB/s | 2.5 MiB | 00m01s [ 86/189] Installing gzip-0:1.14-2.fc44 100% | 18.9 MiB/s | 407.1 KiB | 00m00s [ 87/189] Installing rpm-sequoia-0:1.10 100% | 337.8 MiB/s | 2.4 MiB | 00m00s [ 88/189] Installing libfsverity-0:1.7- 100% | 28.7 MiB/s | 29.4 KiB | 00m00s [ 89/189] Installing libevent-0:2.1.12- 100% | 319.8 MiB/s | 982.4 KiB | 00m00s [ 90/189] Installing systemd-standalone 100% | 41.1 MiB/s | 841.8 KiB | 00m00s [ 91/189] Installing rpm-libs-0:6.0.1-5 100% | 313.4 MiB/s | 962.8 KiB | 00m00s [ 92/189] Installing ngtcp2-crypto-ossl 100% | 51.2 MiB/s | 52.5 KiB | 00m00s [ 93/189] Installing util-linux-core-0: 100% | 63.7 MiB/s | 1.5 MiB | 00m00s [ 94/189] Installing liblastlog2-0:2.42 100% | 6.1 MiB/s | 43.6 KiB | 00m00s [ 95/189] Installing zip-0:3.0-45.fc44. 100% | 31.2 MiB/s | 701.9 KiB | 00m00s [ 96/189] Installing gnupg2-keyboxd-0:2 100% | 28.2 MiB/s | 202.5 KiB | 00m00s [ 97/189] Installing libpsl-0:0.21.5-7. 100% | 75.6 MiB/s | 77.4 KiB | 00m00s [ 98/189] Installing tar-2:1.35-8.fc44. 100% | 106.4 MiB/s | 3.0 MiB | 00m00s [ 99/189] Installing linkdupes-0:0.7.3- 100% | 38.2 MiB/s | 782.3 KiB | 00m00s [100/189] Installing libselinux-utils-0 100% | 15.6 MiB/s | 320.1 KiB | 00m00s [101/189] Installing libfdisk-0:2.42-7. 100% | 126.7 MiB/s | 389.3 KiB | 00m00s [102/189] Installing util-linux-0:2.42- 100% | 84.4 MiB/s | 3.7 MiB | 00m00s [103/189] Installing policycoreutils-0: 100% | 27.0 MiB/s | 912.9 KiB | 00m00s [104/189] Installing selinux-policy-0:4 100% | 1.6 MiB/s | 34.5 KiB | 00m00s [105/189] Installing selinux-policy-tar 100% | 181.7 MiB/s | 14.9 MiB | 00m00s [106/189] Installing zstd-0:1.5.7-5.fc4 100% | 22.5 MiB/s | 506.0 KiB | 00m00s [107/189] Installing libxml2-0:2.12.10- 100% | 77.0 MiB/s | 1.8 MiB | 00m00s [108/189] Installing libusb1-0:1.0.29-5 100% | 17.3 MiB/s | 176.9 KiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-9.fc44.x86_64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-9.fc44.x86_64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [109/189] Installing tpm2-tss-0:4.1.3-9 100% | 233.3 MiB/s | 1.6 MiB | 00m00s [110/189] Installing ima-evm-utils-libs 100% | 60.5 MiB/s | 61.9 KiB | 00m00s [111/189] Installing gnupg2-gpg-agent-0 100% | 23.1 MiB/s | 686.5 KiB | 00m00s [112/189] Installing nettle-0:3.10.1-3. 100% | 194.7 MiB/s | 797.4 KiB | 00m00s [113/189] Installing gnutls-0:3.8.12-1. 100% | 339.6 MiB/s | 3.7 MiB | 00m00s [114/189] Installing bzip2-0:1.0.8-23.f 100% | 4.9 MiB/s | 99.5 KiB | 00m00s [115/189] Installing add-determinism-0: 100% | 90.9 MiB/s | 2.2 MiB | 00m00s [116/189] Installing build-reproducibil 100% | 0.0 B/s | 1.5 KiB | 00m00s [117/189] Installing cpio-0:2.15-9.fc44 100% | 50.1 MiB/s | 1.1 MiB | 00m00s [118/189] Installing ed-0:1.22.5-2.fc45 100% | 7.8 MiB/s | 152.0 KiB | 00m00s [119/189] Installing patch-0:2.8-4.fc44 100% | 11.7 MiB/s | 228.1 KiB | 00m00s [120/189] Installing lz4-libs-0:1.10.0- 100% | 154.6 MiB/s | 158.4 KiB | 00m00s [121/189] Installing libarchive-0:3.8.6 100% | 324.6 MiB/s | 997.2 KiB | 00m00s [122/189] Installing libgomp-0:16.0.1-0 100% | 282.5 MiB/s | 578.6 KiB | 00m00s [123/189] Installing libtool-ltdl-0:2.5 100% | 69.5 MiB/s | 71.1 KiB | 00m00s [124/189] Installing gdbm-libs-1:1.23-1 100% | 128.3 MiB/s | 131.3 KiB | 00m00s [125/189] Installing cyrus-sasl-lib-0:2 100% | 96.3 MiB/s | 2.3 MiB | 00m00s [126/189] Installing openldap-0:2.6.13- 100% | 219.3 MiB/s | 673.7 KiB | 00m00s [127/189] Installing gnupg2-dirmngr-0:2 100% | 22.2 MiB/s | 636.6 KiB | 00m00s [128/189] Installing gnupg2-0:2.4.9-5.f 100% | 175.9 MiB/s | 6.5 MiB | 00m00s [129/189] Installing rpm-sign-libs-0:6. 100% | 39.4 MiB/s | 40.3 KiB | 00m00s [130/189] Installing gpgverify-0:2.2-4. 100% | 0.0 B/s | 9.4 KiB | 00m00s [131/189] Installing jansson-0:2.14-4.f 100% | 88.2 MiB/s | 90.3 KiB | 00m00s [132/189] Installing libpkgconf-0:2.5.1 100% | 89.1 MiB/s | 91.3 KiB | 00m00s [133/189] Installing pkgconf-0:2.5.1-1. 100% | 4.9 MiB/s | 95.2 KiB | 00m00s [134/189] Installing pkgconf-pkg-config 100% | 98.5 KiB/s | 1.8 KiB | 00m00s [135/189] Installing xxhash-libs-0:0.8. 100% | 93.2 MiB/s | 95.4 KiB | 00m00s [136/189] Installing libbrotli-0:1.2.0- 100% | 282.3 MiB/s | 867.3 KiB | 00m00s [137/189] Installing libnghttp2-0:1.68. 100% | 163.4 MiB/s | 167.3 KiB | 00m00s [138/189] Installing libnghttp3-0:1.15. 100% | 156.8 MiB/s | 160.6 KiB | 00m00s [139/189] Installing keyutils-libs-0:1. 100% | 54.3 MiB/s | 55.6 KiB | 00m00s [140/189] Installing libcom_err-0:1.47. 100% | 0.0 B/s | 64.0 KiB | 00m00s [141/189] Installing libverto-0:0.3.2-1 100% | 26.4 MiB/s | 27.1 KiB | 00m00s [142/189] Installing krb5-libs-0:1.22.2 100% | 299.8 MiB/s | 2.4 MiB | 00m00s [143/189] Installing libcbor-0:0.13.0-2 100% | 79.0 MiB/s | 80.9 KiB | 00m00s [144/189] Installing libfido2-0:1.16.0- 100% | 242.1 MiB/s | 247.9 KiB | 00m00s [145/189] Installing libssh-0:0.12.0-1. 100% | 234.8 MiB/s | 721.2 KiB | 00m00s [146/189] Installing libcurl-0:8.20.0~r 100% | 340.7 MiB/s | 1.0 MiB | 00m00s [147/189] Installing curl-0:8.20.0~rc2- 100% | 16.3 MiB/s | 485.3 KiB | 00m00s [148/189] Installing rpm-0:6.0.1-5.fc45 100% | 62.2 MiB/s | 2.6 MiB | 00m00s [149/189] Installing cmake-srpm-macros- 100% | 0.0 B/s | 804.0 B | 00m00s [150/189] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [151/189] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [152/189] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [153/189] Installing tree-sitter-srpm-m 100% | 0.0 B/s | 9.3 KiB | 00m00s [154/189] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [155/189] Installing filesystem-srpm-ma 100% | 0.0 B/s | 38.9 KiB | 00m00s [156/189] Installing elfutils-default-y 100% | 408.6 KiB/s | 2.0 KiB | 00m00s [157/189] Installing elfutils-libs-0:0. 100% | 233.4 MiB/s | 717.1 KiB | 00m00s [158/189] Installing elfutils-debuginfo 100% | 4.2 MiB/s | 86.0 KiB | 00m00s [159/189] Installing elfutils-0:0.194-5 100% | 109.6 MiB/s | 3.0 MiB | 00m00s [160/189] Installing binutils-0:2.46.50 100% | 282.8 MiB/s | 28.3 MiB | 00m00s [161/189] Installing gdb-minimal-0:17.1 100% | 244.7 MiB/s | 14.2 MiB | 00m00s [162/189] Installing debugedit-0:5.3-2. 100% | 11.5 MiB/s | 224.1 KiB | 00m00s [163/189] Installing rpm-build-libs-0:6 100% | 38.7 MiB/s | 277.2 KiB | 00m00s [164/189] Installing rust-srpm-macros-0 100% | 0.0 B/s | 6.4 KiB | 00m00s [165/189] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 748.0 B | 00m00s [166/189] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [167/189] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [168/189] Installing package-notes-srpm 100% | 0.0 B/s | 2.1 KiB | 00m00s [169/189] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [170/189] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [171/189] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [172/189] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [173/189] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [174/189] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.7 KiB | 00m00s [175/189] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [176/189] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [177/189] Installing redhat-rpm-config- 100% | 92.7 MiB/s | 189.9 KiB | 00m00s [178/189] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [179/189] Installing rpm-build-0:6.0.1- 100% | 14.1 MiB/s | 303.7 KiB | 00m00s [180/189] Installing erlang-srpm-macros 100% | 0.0 B/s | 2.5 KiB | 00m00s [181/189] Installing pyproject-srpm-mac 100% | 0.0 B/s | 2.5 KiB | 00m00s [182/189] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [183/189] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 63.0 KiB | 00m00s [184/189] Installing R-srpm-macros-0:1. 100% | 0.0 B/s | 4.4 KiB | 00m00s [185/189] Installing python-srpm-macros 100% | 0.0 B/s | 52.9 KiB | 00m00s [186/189] Installing rpm-plugin-selinux 100% | 0.0 B/s | 12.9 KiB | 00m00s [187/189] Installing which-0:2.23-4.fc4 100% | 4.4 MiB/s | 85.6 KiB | 00m00s [188/189] Installing shadow-utils-2:4.1 100% | 114.9 MiB/s | 4.0 MiB | 00m00s [189/189] Installing info-0:7.3-1.fc45. 100% | 47.0 KiB/s | 372.8 KiB | 00m08s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: R-srpm-macros-1.3.7-1.fc45.noarch add-determinism-0.7.3-2.fc45.x86_64 alternatives-1.33-5.fc44.x86_64 ansible-srpm-macros-1-20.1.fc44.noarch audit-libs-4.1.4-1.fc45.x86_64 bash-5.3.9-3.fc44.x86_64 binutils-2.46.50-7.fc45.x86_64 build-reproducibility-srpm-macros-0.7.3-2.fc45.noarch bzip2-1.0.8-23.fc44.x86_64 bzip2-libs-1.0.8-23.fc44.x86_64 ca-certificates-2025.2.80_v9.0.304-7.fc45.noarch cmake-srpm-macros-4.3.0-1.fc45.noarch coreutils-9.10-3.fc45.x86_64 coreutils-common-9.10-3.fc45.x86_64 cpio-2.15-9.fc44.x86_64 crypto-policies-20251128-3.git19878fe.fc44.noarch curl-8.20.0~rc2-1.fc45.x86_64 cyrus-sasl-lib-2.1.28-35.fc44.x86_64 debugedit-5.3-2.fc45.x86_64 diffutils-3.12-5.fc44.x86_64 dwz-0.16-3.fc44.x86_64 ed-1.22.5-2.fc45.x86_64 efi-srpm-macros-6-6.fc44.noarch elfutils-0.194-5.fc45.x86_64 elfutils-debuginfod-client-0.194-5.fc45.x86_64 elfutils-default-yama-scope-0.194-5.fc45.noarch elfutils-libelf-0.194-5.fc45.x86_64 elfutils-libs-0.194-5.fc45.x86_64 erlang-srpm-macros-0.3.11-1.fc45.noarch fedora-gpg-keys-45-0.1.noarch fedora-release-45-0.5.noarch fedora-release-common-45-0.5.noarch fedora-release-identity-basic-45-0.5.noarch fedora-repos-45-0.1.noarch fedora-repos-rawhide-45-0.1.noarch file-5.47-1.fc45.x86_64 file-libs-5.47-1.fc45.x86_64 filesystem-3.18-56.fc45.x86_64 filesystem-srpm-macros-3.18-56.fc45.noarch findutils-4.10.0-7.fc44.x86_64 fonts-srpm-macros-5.0.0-3.fc45.noarch forge-srpm-macros-0.4.0-4.fc44.noarch fpc-srpm-macros-1.3-16.fc44.noarch gap-srpm-macros-2-2.fc44.noarch gawk-5.4.0-2.fc45.x86_64 gdb-minimal-17.1-5.fc45.x86_64 gdbm-libs-1.23-11.fc44.x86_64 ghc-srpm-macros-1.10-1.fc44.noarch glibc-2.43.9000-11.fc45.x86_64 glibc-common-2.43.9000-11.fc45.x86_64 glibc-gconv-extra-2.43.9000-11.fc45.x86_64 glibc-minimal-langpack-2.43.9000-11.fc45.x86_64 gmp-6.3.0-5.fc44.x86_64 gnat-srpm-macros-7-2.fc44.noarch gnulib-l10n-20241231-2.fc44.noarch gnupg2-2.4.9-5.fc44.x86_64 gnupg2-dirmngr-2.4.9-5.fc44.x86_64 gnupg2-gpg-agent-2.4.9-5.fc44.x86_64 gnupg2-gpgconf-2.4.9-5.fc44.x86_64 gnupg2-keyboxd-2.4.9-5.fc44.x86_64 gnupg2-verify-2.4.9-5.fc44.x86_64 gnutls-3.8.12-1.fc45.x86_64 go-srpm-macros-3.8.0-2.fc44.noarch gpg-pubkey-36f612dcf27f7d1a48a835e4dbfcf71c6d9f90a6-6786af3b gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98 gpg-pubkey-d924b10d3e810dabdd8b56b596e7e91491211fce-697c9899 gpgverify-2.2-4.fc44.noarch grep-3.12-3.fc44.x86_64 gzip-1.14-2.fc44.x86_64 ima-evm-utils-libs-1.6.2-10.fc45.x86_64 info-7.3-1.fc45.x86_64 jansson-2.14-4.fc44.x86_64 java-srpm-macros-1-8.fc44.noarch json-c-0.18-8.fc44.x86_64 kernel-srpm-macros-1.0-29.fc45.noarch keyutils-libs-1.6.3-7.fc44.x86_64 krb5-libs-1.22.2-5.fc45.x86_64 libacl-2.3.2-6.fc44.x86_64 libarchive-3.8.6-1.fc45.x86_64 libassuan-2.5.7-5.fc44.x86_64 libattr-2.5.2-8.fc44.x86_64 libblkid-2.42-7.fc45.x86_64 libbrotli-1.2.0-3.fc44.x86_64 libcap-2.78-1.fc45.x86_64 libcap-ng-0.9.3-1.fc45.x86_64 libcbor-0.13.0-2.fc44.x86_64 libcom_err-1.47.4-1.fc45.x86_64 libcurl-8.20.0~rc2-1.fc45.x86_64 libeconf-0.7.9-3.fc44.x86_64 libevent-2.1.12-17.fc44.x86_64 libfdisk-2.42-7.fc45.x86_64 libffi-3.5.2-2.fc44.x86_64 libfido2-1.16.0-5.fc44.x86_64 libfsverity-1.7-1.fc45.x86_64 libgcc-16.0.1-0.10.fc45.x86_64 libgcrypt-1.12.2-1.fc45.x86_64 libgomp-16.0.1-0.10.fc45.x86_64 libgpg-error-1.59-1.fc45.x86_64 libidn2-2.3.8-3.fc44.x86_64 libksba-1.6.8-1.fc45.x86_64 liblastlog2-2.42-7.fc45.x86_64 libmount-2.42-7.fc45.x86_64 libnghttp2-1.68.1-1.fc45.x86_64 libnghttp3-1.15.0-1.fc44.x86_64 libpkgconf-2.5.1-1.fc45.x86_64 libpsl-0.21.5-7.fc44.x86_64 libselinux-3.10-1.fc44.x86_64 libselinux-utils-3.10-1.fc44.x86_64 libsemanage-3.10-1.fc44.x86_64 libsepol-3.10-1.fc44.x86_64 libsmartcols-2.42-7.fc45.x86_64 libssh-0.12.0-1.fc45.x86_64 libssh-config-0.12.0-1.fc45.noarch libstdc++-16.0.1-0.10.fc45.x86_64 libtasn1-4.21.0-1.fc45.x86_64 libtool-ltdl-2.5.4-10.fc44.x86_64 libunistring-1.1-11.fc44.x86_64 libusb1-1.0.29-5.fc44.x86_64 libuuid-2.42-7.fc45.x86_64 libverto-0.3.2-12.fc44.x86_64 libxcrypt-4.5.2-3.fc44.x86_64 libxml2-2.12.10-6.fc44.x86_64 libzstd-1.5.7-5.fc44.x86_64 linkdupes-0.7.3-2.fc45.x86_64 lua-libs-5.5.0-1.fc45.x86_64 lua-srpm-macros-1-17.fc44.noarch lz4-libs-1.10.0-4.fc44.x86_64 mpfr-4.2.2-3.fc44.x86_64 ncurses-base-6.6-1.fc44.noarch ncurses-libs-6.6-1.fc44.x86_64 nettle-3.10.1-3.fc44.x86_64 ngtcp2-1.21.0-1.fc45.x86_64 ngtcp2-crypto-ossl-1.21.0-1.fc45.x86_64 npth-1.8-4.fc44.x86_64 ocaml-srpm-macros-11-3.fc44.noarch openblas-srpm-macros-2-21.fc44.noarch openldap-2.6.13-1.fc45.x86_64 openssl-libs-3.5.5-2.fc45.x86_64 p11-kit-0.26.2-1.fc45.x86_64 p11-kit-trust-0.26.2-1.fc45.x86_64 package-notes-srpm-macros-0.17-3.fc45.noarch pam-libs-1.7.2-1.fc44.x86_64 patch-2.8-4.fc44.x86_64 pcre2-10.47-1.fc44.1.x86_64 pcre2-syntax-10.47-1.fc44.1.noarch perl-srpm-macros-1-61.fc44.noarch pkgconf-2.5.1-1.fc45.x86_64 pkgconf-m4-2.5.1-1.fc45.noarch pkgconf-pkg-config-2.5.1-1.fc45.x86_64 policycoreutils-3.10-3.fc45.x86_64 popt-1.19-10.fc44.x86_64 publicsuffix-list-dafsa-20260116-1.fc44.noarch pyproject-srpm-macros-1.19.0-1.fc45.noarch python-srpm-macros-3.14-12.fc45.noarch qt5-srpm-macros-5.15.18-2.fc44.noarch qt6-srpm-macros-6.10.3-1.fc45.noarch readline-8.3-4.fc44.x86_64 redhat-rpm-config-344-1.fc45.noarch redhat-systemd-presets-102-1.fc45.noarch redhat-systemd-presets-common-102-1.fc45.noarch rpm-6.0.1-5.fc45.x86_64 rpm-build-6.0.1-5.fc45.x86_64 rpm-build-libs-6.0.1-5.fc45.x86_64 rpm-libs-6.0.1-5.fc45.x86_64 rpm-plugin-selinux-6.0.1-5.fc45.x86_64 rpm-sequoia-1.10.1-1.fc45.x86_64 rpm-sign-libs-6.0.1-5.fc45.x86_64 rust-srpm-macros-28.4-3.fc44.noarch sed-4.9-8.fc45.x86_64 selinux-policy-43.6-2.fc45.noarch selinux-policy-targeted-43.6-2.fc45.noarch setup-2.15.0-29.fc45.noarch shadow-utils-4.19.3-1.fc45.x86_64 sqlite-libs-3.52.0-1.fc45.x86_64 systemd-libs-260.1-2.fc45.x86_64 systemd-standalone-sysusers-260.1-2.fc45.x86_64 tar-1.35-8.fc44.x86_64 tpm2-tss-4.1.3-9.fc44.x86_64 tree-sitter-srpm-macros-0.4.2-2.fc44.noarch unzip-6.0-69.fc44.x86_64 util-linux-2.42-7.fc45.x86_64 util-linux-core-2.42-7.fc45.x86_64 which-2.23-4.fc44.x86_64 xxhash-libs-0.8.3-4.fc44.x86_64 xz-5.8.3-1.fc45.x86_64 xz-libs-5.8.3-1.fc45.x86_64 zig-srpm-macros-1-8.fc44.noarch zip-3.0-45.fc44.x86_64 zlib-ng-compat-2.3.3-5.fc45.x86_64 zstd-1.5.7-5.fc44.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1776384000 Wrote: /builddir/build/SRPMS/bout++-5.2.0-11.fc45.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1776423486.131948/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-s0_dha0s/bout++/bout++.spec) Config(child) 0 minutes 27 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/bout++-5.2.0-11.fc45.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1776423486.131948/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1776423486.131948/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1776423486.131948/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.1-5.fc45.x86_64 rpm-sequoia-1.10.1-1.fc45.x86_64 dnf5-5.4.0.0-6.fc45.x86_64 dnf5-plugins-5.4.0.0-6.fc45.x86_64 Finish: chroot init Start: build phase for bout++-5.2.0-11.fc45.src.rpm Start: build setup for bout++-5.2.0-11.fc45.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1776384000 Wrote: /builddir/build/SRPMS/bout++-5.2.0-11.fc45.src.rpm Updating and loading repositories: fedora 100% | 114.9 KiB/s | 21.8 KiB | 00m00s Copr repository 100% | 138.0 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: chrpath x86_64 0:0.16-28.fc44 fedora 58.3 KiB cmake x86_64 0:4.3.0-1.fc45 fedora 40.5 MiB doxygen x86_64 2:1.16.1-3.fc45 fedora 20.6 MiB environment-modules x86_64 0:5.6.1-3.fc44 fedora 1.9 MiB fftw-devel x86_64 0:3.3.10-17.fc44 fedora 283.1 KiB flexiblas-devel x86_64 0:3.5.0-2.fc44 fedora 5.9 MiB fmt-devel x86_64 0:11.2.0-4.fc44 fedora 570.1 KiB gcc-c++ x86_64 0:16.0.1-0.10.fc45 fedora 46.3 MiB gettext-devel x86_64 0:1.0-1.fc45 fedora 1.4 MiB hdf5-devel x86_64 0:1.14.6-7.fc44 fedora 3.3 MiB hdf5-mpich-devel x86_64 0:1.14.6-7.fc44 fedora 3.2 MiB hdf5-openmpi-devel x86_64 0:1.14.6-7.fc44 fedora 3.2 MiB m4 x86_64 0:1.4.21-1.fc45 fedora 881.1 KiB mpark-variant-devel x86_64 0:1.4.0-16.fc44 fedora 117.2 KiB mpich-devel x86_64 0:4.2.2-7.fc44 fedora 2.0 MiB netcdf-cxx4-devel x86_64 0:4.3.1-22.fc44 fedora 214.3 KiB netcdf-devel x86_64 0:4.9.3-2.fc44 fedora 397.7 KiB openmpi-devel x86_64 0:5.0.10-1.fc45 fedora 3.2 MiB petsc-mpich-devel x86_64 0:3.24.6-1.fc45 fedora 16.0 MiB petsc-openmpi-devel x86_64 0:3.24.6-1.fc45 fedora 16.5 MiB python3 x86_64 0:3.14.4-1.fc45 fedora 28.7 KiB python3-boutdata noarch 0:0.3.0-7.fc44 fedora 1.2 MiB python3-cython x86_64 0:3.2.4-3.fc44 fedora 19.2 MiB python3-devel x86_64 0:3.14.4-1.fc45 fedora 2.0 MiB python3-jinja2 noarch 0:3.1.6-7.fc44 fedora 3.1 MiB python3-netcdf4 x86_64 0:1.7.3-2.fc44 fedora 2.3 MiB python3-numpy x86_64 1:2.4.4-1.fc45 fedora 41.3 MiB python3-scipy x86_64 0:1.16.2-3.fc44 fedora 64.5 MiB python3-sphinx noarch 1:9.1.0-1.fc45 fedora 13.8 MiB python3-tables x86_64 0:3.10.2-8.fc44 fedora 10.0 MiB python3-zoidberg noarch 0:0.2.2-2.fc44 fedora 827.0 KiB sundials-devel x86_64 0:7.6.0-1.fc45 fedora 29.0 MiB sundials-mpich-devel x86_64 0:7.6.0-1.fc45 fedora 30.2 MiB sundials-openmpi-devel x86_64 0:7.6.0-1.fc45 fedora 30.2 MiB zlib-ng-compat-devel x86_64 0:2.3.3-5.fc45 fedora 107.0 KiB Installing dependencies: MUMPS-common noarch 0:5.7.3-7.fc44 fedora 988.4 KiB MUMPS-mpich x86_64 0:5.7.3-7.fc44 fedora 9.7 MiB MUMPS-openmpi x86_64 0:5.7.3-7.fc44 fedora 9.7 MiB abattis-cantarell-vf-fonts noarch 0:0.301-17.fc44 fedora 192.7 KiB adobe-mappings-cmap noarch 0:20231115-5.fc44 fedora 15.2 MiB adobe-mappings-cmap-deprecated noarch 0:20231115-5.fc44 fedora 582.1 KiB adobe-mappings-pdf noarch 0:20190401-12.fc44 fedora 4.4 MiB annobin-docs noarch 0:13.07-1.fc45 fedora 99.2 KiB annobin-plugin-gcc x86_64 0:13.07-1.fc45 fedora 697.1 KiB avahi-libs x86_64 0:0.9~rc2-8.fc44 fedora 179.2 KiB blosc x86_64 0:1.21.6-10.fc44 fedora 126.1 KiB blosc2 x86_64 0:2.22.0-2.fc44 fedora 562.9 KiB brotli x86_64 0:1.2.0-3.fc44 fedora 33.4 KiB brotli-devel x86_64 0:1.2.0-3.fc44 fedora 65.9 KiB bubblewrap x86_64 0:0.11.0-4.fc44 fedora 134.8 KiB cairo x86_64 0:1.18.4-6.fc44 fedora 1.8 MiB cairo-gobject x86_64 0:1.18.4-6.fc44 fedora 31.0 KiB clang-libs x86_64 0:22.1.3-1.fc45 fedora 109.8 MiB clang-resource-filesystem x86_64 0:22.1.3-1.fc45 fedora 15.3 KiB cmake-data noarch 0:4.3.0-1.fc45 fedora 9.4 MiB cmake-filesystem x86_64 0:4.3.0-1.fc45 fedora 0.0 B cmake-rpm-macros noarch 0:4.3.0-1.fc45 fedora 8.4 KiB cpp x86_64 0:16.0.1-0.10.fc45 fedora 42.1 MiB cups-filesystem noarch 1:2.4.16-7.fc45 fedora 0.0 B cups-libs x86_64 1:2.4.16-7.fc45 fedora 634.6 KiB dbus-libs x86_64 1:1.16.2-1.fc45 fedora 357.5 KiB default-fonts-core-sans noarch 0:4.3-1.fc45 fedora 11.9 KiB dejavu-sans-fonts noarch 0:2.37-29.fc44 fedora 5.5 MiB emacs-filesystem x86_64 1:30.2-2.fc44 fedora 0.0 B expat x86_64 0:2.7.5-1.fc45 fedora 322.9 KiB fftw x86_64 0:3.3.10-17.fc44 fedora 181.4 KiB fftw-libs x86_64 0:3.3.10-17.fc44 fedora 0.0 B fftw-libs-double x86_64 0:3.3.10-17.fc44 fedora 3.4 MiB fftw-libs-long x86_64 0:3.3.10-17.fc44 fedora 1.5 MiB fftw-libs-quad x86_64 0:3.3.10-17.fc44 fedora 2.5 MiB fftw-libs-single x86_64 0:3.3.10-17.fc44 fedora 3.6 MiB flexiblas x86_64 0:3.5.0-2.fc44 fedora 38.0 KiB flexiblas-netlib x86_64 0:3.5.0-2.fc44 fedora 16.3 MiB flexiblas-netlib64 x86_64 0:3.5.0-2.fc44 fedora 16.5 MiB flexiblas-openblas-openmp x86_64 0:3.5.0-2.fc44 fedora 39.1 KiB flexiblas-openblas-openmp64 x86_64 0:3.5.0-2.fc44 fedora 39.1 KiB fmt x86_64 0:11.2.0-4.fc44 fedora 274.9 KiB fontconfig x86_64 0:2.17.0-4.fc44 fedora 776.4 KiB fonts-filesystem noarch 1:5.0.0-3.fc45 fedora 0.0 B freetype x86_64 0:2.14.3-1.fc45 fedora 918.3 KiB fribidi x86_64 0:1.0.16-4.fc44 fedora 190.0 KiB gcc x86_64 0:16.0.1-0.10.fc45 fedora 120.6 MiB gcc-gfortran x86_64 0:16.0.1-0.10.fc45 fedora 44.8 MiB gcc-plugin-annobin x86_64 0:16.0.1-0.10.fc45 fedora 57.2 KiB gd x86_64 0:2.3.3-21.fc44 fedora 411.5 KiB gdk-pixbuf2 x86_64 0:2.44.6-1.fc45 fedora 2.6 MiB gettext x86_64 0:1.0-1.fc45 fedora 17.8 MiB gettext-common-devel noarch 0:1.0-1.fc45 fedora 596.2 KiB gettext-envsubst x86_64 0:1.0-1.fc45 fedora 74.6 KiB gettext-libs x86_64 0:1.0-1.fc45 fedora 2.3 MiB gettext-runtime x86_64 0:1.0-1.fc45 fedora 716.0 KiB glib2 x86_64 0:2.88.0-1.fc45 fedora 15.3 MiB glibc-devel x86_64 0:2.43.9000-11.fc45 fedora 2.3 MiB glycin-libs x86_64 0:2.1.1-1.fc45 fedora 4.3 MiB glycin-loaders x86_64 0:2.1.1-1.fc45 fedora 14.0 MiB gobject-introspection x86_64 0:1.86.0-3.fc45 fedora 397.3 KiB google-droid-sans-fonts noarch 0:20200215-24.fc44 fedora 6.3 MiB google-noto-fonts-common noarch 0:20260401-1.fc45 fedora 17.7 KiB google-noto-sans-vf-fonts noarch 0:20260401-1.fc45 fedora 1.4 MiB gpgme x86_64 0:2.0.1-3.fc44 fedora 617.8 KiB gpgmepp x86_64 0:2.0.1-3.fc44 fedora 441.6 KiB graphite2 x86_64 0:1.3.14-20.fc44 fedora 191.5 KiB graphviz x86_64 0:14.1.4-1.fc45 fedora 4.0 MiB graphviz-libs x86_64 0:14.1.4-1.fc45 fedora 1.3 MiB groff-base x86_64 0:1.24.0-1.fc45 fedora 4.2 MiB gts x86_64 0:0.7.6-52.20121130.fc44 fedora 650.9 KiB harfbuzz x86_64 0:14.1.0-2.fc45 fedora 2.8 MiB hdf-libs x86_64 0:4.3.0-6.fc45 fedora 706.8 KiB hdf5 x86_64 0:1.14.6-7.fc44 fedora 6.5 MiB hdf5-mpich x86_64 0:1.14.6-7.fc44 fedora 6.5 MiB hdf5-openmpi x86_64 0:1.14.6-7.fc44 fedora 6.5 MiB highway x86_64 0:1.3.0-2.fc44 fedora 5.5 MiB hwloc-libs x86_64 0:2.12.0-3.fc44 fedora 2.9 MiB hypre-mpich x86_64 0:2.32.0-9.fc45 fedora 5.4 MiB hypre-openmpi x86_64 0:2.32.0-9.fc45 fedora 5.4 MiB jbig2dec-libs x86_64 0:0.20-8.fc44 fedora 168.8 KiB jbigkit-libs x86_64 0:2.1-33.fc44 fedora 117.2 KiB js-doxygen noarch 2:1.16.1-3.fc45 fedora 375.0 KiB jsoncpp x86_64 0:1.9.6-3.fc44 fedora 285.6 KiB kernel-headers x86_64 0:7.0.0-62.fc45 fedora 6.9 MiB keyutils-libs-devel x86_64 0:1.6.3-7.fc44 fedora 48.2 KiB krb5-devel x86_64 0:1.22.2-5.fc45 fedora 709.9 KiB lasi x86_64 0:1.1.3-18.fc44 fedora 126.6 KiB lcms2 x86_64 0:2.16-7.fc44 fedora 445.7 KiB less x86_64 0:692-5.fc45 fedora 466.8 KiB libICE x86_64 0:1.1.2-4.fc44 fedora 198.3 KiB libSM x86_64 0:1.2.5-4.fc44 fedora 100.9 KiB libX11 x86_64 0:1.8.13-1.fc45 fedora 1.3 MiB libX11-common noarch 0:1.8.13-1.fc45 fedora 1.1 MiB libXau x86_64 0:1.0.12-4.fc44 fedora 72.8 KiB libXext x86_64 0:1.3.6-5.fc44 fedora 89.8 KiB libXft x86_64 0:2.3.8-10.fc44 fedora 168.3 KiB libXpm x86_64 0:3.5.17-7.fc44 fedora 148.2 KiB libXrender x86_64 0:0.9.12-4.fc44 fedora 49.9 KiB libXt x86_64 0:1.3.1-4.fc44 fedora 437.6 KiB libaec x86_64 0:1.1.6-1.fc45 fedora 91.8 KiB libaec-devel x86_64 0:1.1.6-1.fc45 fedora 22.6 KiB libaom x86_64 0:3.13.3-2.fc45 fedora 5.1 MiB libatomic x86_64 0:16.0.1-0.10.fc45 fedora 45.5 KiB libavif x86_64 0:1.3.0-4.fc44 fedora 265.8 KiB libcom_err-devel x86_64 0:1.47.4-1.fc45 fedora 16.7 KiB libcurl-devel x86_64 0:8.20.0~rc2-1.fc45 fedora 1.4 MiB libdatrie x86_64 0:0.2.14-2.fc44 fedora 61.7 KiB libdav1d x86_64 0:1.5.3-1.fc45 fedora 1.7 MiB libedit x86_64 0:3.1-58.20251016cvs.fc44 fedora 248.1 KiB libfabric x86_64 0:2.5.1-1.fc45 fedora 9.3 MiB libgfortran x86_64 0:16.0.1-0.10.fc45 fedora 3.4 MiB libgs x86_64 0:10.07.0-1.fc45 fedora 24.6 MiB libheif x86_64 0:1.21.2-3.fc45 fedora 1.8 MiB libibverbs x86_64 0:62.0-1.fc45 fedora 1.3 MiB libidn2-devel x86_64 0:2.3.8-3.fc44 fedora 149.1 KiB libijs x86_64 0:0.35-26.fc44 fedora 61.4 KiB libimagequant x86_64 0:4.1.0-2.fc44 fedora 707.6 KiB libjpeg-turbo x86_64 0:3.1.4.1-1.fc45 fedora 825.7 KiB libjxl x86_64 1:0.11.1-8.fc44 fedora 4.1 MiB libkadm5 x86_64 0:1.22.2-5.fc45 fedora 217.8 KiB liblerc x86_64 0:4.1.0-1.fc45 fedora 640.4 KiB libmpc x86_64 0:1.4.1-1.fc45 fedora 168.7 KiB libnghttp2-devel x86_64 0:1.68.1-1.fc45 fedora 288.0 KiB libnghttp3-devel x86_64 0:1.15.0-1.fc44 fedora 107.4 KiB libnl3 x86_64 0:3.12.0-3.fc44 fedora 1.1 MiB libopenjph x86_64 0:0.26.3-1.fc45 fedora 482.1 KiB libpaper x86_64 1:2.1.1-10.fc44 fedora 48.6 KiB libpipeline x86_64 0:1.5.8-4.fc44 fedora 145.0 KiB libpng x86_64 2:1.6.56-1.fc45 fedora 249.6 KiB libpsl-devel x86_64 0:0.21.5-7.fc44 fedora 110.2 KiB libpsm2 x86_64 0:12.0.1-7.fc45 fedora 454.2 KiB libqhull_r x86_64 1:8.0.2-8.fc44 fedora 491.2 KiB libquadmath x86_64 0:16.0.1-0.10.fc45 fedora 325.9 KiB libquadmath-devel x86_64 0:16.0.1-0.10.fc45 fedora 22.2 KiB libraqm x86_64 0:0.10.1-4.fc44 fedora 32.5 KiB librdmacm x86_64 0:62.0-1.fc45 fedora 153.8 KiB librsvg2 x86_64 0:2.62.0-1.fc45 fedora 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noarch 0:0.68-524.fc45 fedora 25.4 KiB perl-Data-Dumper x86_64 0:2.191-522.fc44 fedora 115.5 KiB perl-Digest noarch 0:1.20-521.fc44 fedora 35.3 KiB perl-Digest-MD5 x86_64 0:2.59-521.fc44 fedora 59.6 KiB perl-DynaLoader x86_64 0:1.57-524.fc45 fedora 32.1 KiB perl-Encode x86_64 4:3.21-521.fc44 fedora 4.7 MiB perl-Errno x86_64 0:1.38-524.fc45 fedora 8.4 KiB perl-Exporter noarch 0:5.79-521.fc44 fedora 54.3 KiB perl-Fcntl x86_64 0:1.20-524.fc45 fedora 48.7 KiB perl-File-Basename noarch 0:2.86-524.fc45 fedora 14.0 KiB perl-File-Path noarch 0:2.18-522.fc44 fedora 63.5 KiB perl-File-Temp noarch 1:0.231.200-2.fc44 fedora 163.7 KiB perl-File-stat noarch 0:1.14-524.fc45 fedora 12.5 KiB perl-FileHandle noarch 0:2.05-524.fc45 fedora 9.4 KiB perl-Getopt-Long noarch 1:2.58-521.fc44 fedora 144.5 KiB perl-Getopt-Std noarch 0:1.14-524.fc45 fedora 11.2 KiB perl-HTTP-Tiny noarch 0:0.092-2.fc44 fedora 157.6 KiB perl-IO x86_64 0:1.55-524.fc45 fedora 147.3 KiB perl-IO-Socket-IP noarch 0:0.43-522.fc44 fedora 100.3 KiB perl-IO-Socket-SSL noarch 0:2.098-2.fc44 fedora 723.5 KiB perl-IPC-Open3 noarch 0:1.24-524.fc45 fedora 27.7 KiB perl-MIME-Base32 noarch 0:1.303-25.fc44 fedora 30.7 KiB perl-MIME-Base64 x86_64 0:3.16-521.fc44 fedora 41.9 KiB perl-Net-SSLeay x86_64 0:1.96-1.fc45 fedora 1.3 MiB perl-POSIX x86_64 0:2.23-524.fc45 fedora 229.4 KiB perl-PathTools x86_64 0:3.94-521.fc44 fedora 179.9 KiB perl-Pod-Escapes noarch 1:1.07-521.fc44 fedora 24.9 KiB perl-Pod-Perldoc noarch 0:3.28.01-522.fc44 fedora 163.7 KiB perl-Pod-Simple noarch 1:3.47-4.fc44 fedora 565.3 KiB perl-Pod-Usage noarch 4:2.05-521.fc44 fedora 86.3 KiB perl-Scalar-List-Utils x86_64 5:1.70-2.fc44 fedora 144.8 KiB perl-SelectSaver noarch 0:1.02-524.fc45 fedora 2.2 KiB perl-Socket x86_64 4:2.040-3.fc44 fedora 120.1 KiB perl-Storable x86_64 1:3.37-522.fc44 fedora 235.1 KiB perl-Symbol noarch 0:1.09-524.fc45 fedora 6.8 KiB perl-Term-ANSIColor noarch 0:5.01-522.fc44 fedora 97.5 KiB perl-Term-Cap noarch 0:1.18-521.fc44 fedora 29.3 KiB perl-Text-ParseWords noarch 0:3.31-521.fc44 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 0:2024.001-521.fc44 fedora 22.6 KiB perl-Time-HiRes x86_64 4:1.9778-521.fc44 fedora 115.6 KiB perl-Time-Local noarch 2:1.350-521.fc44 fedora 69.0 KiB perl-URI noarch 0:5.34-3.fc44 fedora 268.0 KiB perl-base noarch 0:2.27-524.fc45 fedora 12.6 KiB perl-constant noarch 0:1.33-522.fc44 fedora 26.2 KiB perl-if noarch 0:0.61.000-524.fc45 fedora 5.8 KiB perl-interpreter x86_64 4:5.42.2-524.fc45 fedora 118.7 KiB perl-libnet noarch 0:3.15-522.fc44 fedora 289.4 KiB perl-libs x86_64 4:5.42.2-524.fc45 fedora 11.6 MiB perl-locale noarch 0:1.13-524.fc45 fedora 6.1 KiB perl-mro x86_64 0:1.29-524.fc45 fedora 41.4 KiB perl-overload noarch 0:1.40-524.fc45 fedora 71.6 KiB perl-overloading noarch 0:0.02-524.fc45 fedora 4.9 KiB perl-parent noarch 1:0.244-521.fc44 fedora 10.3 KiB perl-podlators noarch 1:6.0.2-521.fc44 fedora 317.5 KiB perl-vars noarch 0:1.05-524.fc45 fedora 3.9 KiB petsc-mpich x86_64 0:3.24.6-1.fc45 fedora 26.2 MiB petsc-openmpi x86_64 0:3.24.6-1.fc45 fedora 26.6 MiB pixman x86_64 0:0.46.2-3.fc44 fedora 718.2 KiB pmix x86_64 0:5.0.7-3.fc44 fedora 2.2 MiB poppler x86_64 0:26.01.0-7.fc45 fedora 4.0 MiB poppler-data noarch 0:0.4.11-11.fc44 fedora 12.3 MiB poppler-glib x86_64 0:26.01.0-7.fc45 fedora 658.9 KiB procps-ng x86_64 0:4.0.6-1.fc44 fedora 1.1 MiB prrte x86_64 0:3.0.6-9.fc44 fedora 161.4 KiB prrte-libs x86_64 0:3.0.6-9.fc44 fedora 1.7 MiB ptscotch-mpich x86_64 0:7.0.10-2.fc44 fedora 1.2 MiB ptscotch-openmpi x86_64 0:7.0.10-2.fc44 fedora 1.2 MiB publicsuffix-list noarch 0:20260116-1.fc44 fedora 342.2 KiB pyproject-rpm-macros noarch 0:1.19.0-1.fc45 fedora 116.7 KiB python-pip-wheel noarch 0:26.0.1-2.fc45 fedora 1.2 MiB python-rpm-macros noarch 0:3.14-12.fc45 fedora 28.0 KiB python3-babel noarch 0:2.18.0-1.fc45 fedora 30.3 MiB python3-blosc2 x86_64 0:3.12.0-1.fc44 fedora 2.3 MiB python3-cairo x86_64 0:1.28.0-5.fc44 fedora 508.8 KiB python3-certifi noarch 0:2026.01.04-1.fc45 fedora 7.4 KiB python3-cftime x86_64 0:1.6.5-2.fc44 fedora 2.9 MiB python3-charset-normalizer noarch 0:3.4.7-1.fc45 fedora 405.6 KiB python3-contourpy x86_64 0:1.3.3-3.fc44 fedora 856.7 KiB python3-cpuinfo noarch 0:9.0.0-17.fc44 fedora 310.7 KiB python3-cycler noarch 0:0.11.0-20.fc44 fedora 37.8 KiB python3-dateutil noarch 1:2.9.0.post0-10.fc45 fedora 878.0 KiB python3-docutils noarch 0:0.22.4-2.fc44 fedora 5.5 MiB python3-fonttools x86_64 0:4.62.1-1.fc45 fedora 19.4 MiB python3-fortranformat noarch 0:2.0.3-2.fc44 fedora 184.0 KiB python3-freeqdsk noarch 0:0.5.2-2.fc44 fedora 160.9 KiB python3-idna noarch 0:3.11-2.fc44 fedora 738.4 KiB python3-imagesize noarch 0:2.0.0-1.fc45 fedora 82.4 KiB python3-kiwisolver x86_64 0:1.5.0-1.fc45 fedora 157.8 KiB python3-libs x86_64 0:3.14.4-1.fc45 fedora 43.8 MiB python3-markupsafe x86_64 0:3.0.2-7.fc44 fedora 61.4 KiB python3-matplotlib x86_64 0:3.10.8-2.fc44 fedora 31.8 MiB python3-matplotlib-data-fonts x86_64 0:3.10.8-2.fc44 fedora 7.9 MiB python3-mpmath noarch 0:1.4.0b3-3.fc45 fedora 4.1 MiB python3-msgpack x86_64 0:1.1.2-2.fc44 fedora 319.8 KiB python3-natsort noarch 0:8.4.0-9.fc44 fedora 264.4 KiB python3-ndindex x86_64 0:1.10.0-6.fc44 fedora 1.1 MiB python3-numexpr x86_64 0:2.14.1-1.fc44 fedora 859.7 KiB python3-numpy-f2py x86_64 1:2.4.4-1.fc45 fedora 2.1 MiB python3-olefile noarch 0:0.47-13.fc44 fedora 346.5 KiB python3-packaging noarch 0:26.0-1.fc45 fedora 732.3 KiB python3-pillow x86_64 0:12.2.0-1.fc45 fedora 4.5 MiB python3-platformdirs noarch 0:4.9.1-1.fc45 fedora 236.5 KiB python3-pooch noarch 0:1.9.0-1.fc44 fedora 657.1 KiB python3-pygments noarch 0:2.19.2-1.fc45 fedora 11.3 MiB python3-pyparsing noarch 0:3.1.2-15.fc44 fedora 1.0 MiB python3-requests noarch 0:2.33.1-1.fc45 fedora 477.3 KiB python3-roman-numerals noarch 0:4.1.0-1.fc45 fedora 40.8 KiB python3-rpm-generators noarch 0:14-15.fc45 fedora 81.7 KiB python3-rpm-macros noarch 0:3.14-12.fc45 fedora 6.5 KiB python3-six noarch 0:1.17.0-8.fc44 fedora 118.0 KiB python3-snowballstemmer noarch 0:3.0.1-11.fc44 fedora 1.8 MiB python3-sphinx-theme-alabaster noarch 0:0.7.16-12.fc44 fedora 42.0 KiB python3-sympy noarch 0:1.14.0-12.fc45 fedora 84.3 MiB python3-typing-extensions noarch 0:4.15.0-4.fc45 fedora 538.8 KiB python3-urllib3 noarch 0:2.6.3-3.fc45 fedora 1.1 MiB rav1e-libs x86_64 0:0.8.1-3.fc44 fedora 3.1 MiB rdma-core-common noarch 0:62.0-1.fc45 fedora 21.9 KiB rhash x86_64 0:1.4.5-4.fc44 fedora 354.8 KiB rpm-mpi-hooks noarch 0:8-13.fc44 fedora 8.7 KiB scalapack-common x86_64 0:2.2.2-6.fc44 fedora 27.5 KiB scalapack-mpich x86_64 0:2.2.2-6.fc44 fedora 5.4 MiB scalapack-openmpi x86_64 0:2.2.2-6.fc44 fedora 5.4 MiB shared-mime-info x86_64 0:2.4-3.fc44 fedora 5.2 MiB snappy x86_64 0:1.2.2-4.fc44 fedora 79.9 KiB spdlog x86_64 0:1.15.3-4.fc44 fedora 380.4 KiB suitesparse x86_64 0:7.11.0-2.fc44 fedora 45.9 MiB suitesparse64 x86_64 0:7.11.0-2.fc44 fedora 45.9 MiB sundials x86_64 0:7.6.0-1.fc45 fedora 4.1 MiB sundials-mpich x86_64 0:7.6.0-1.fc45 fedora 4.4 MiB sundials-openmpi x86_64 0:7.6.0-1.fc45 fedora 4.4 MiB superlu_dist-mpich x86_64 1:9.2.1-3.fc45 fedora 1.8 MiB superlu_dist-openmpi x86_64 1:9.2.1-3.fc45 fedora 1.8 MiB svt-av1-libs x86_64 0:3.1.2-2.fc44 fedora 5.6 MiB tcl x86_64 1:9.0.2-1.fc44 fedora 4.3 MiB tzdata noarch 0:2026a-1.fc45 fedora 1.2 MiB ucx x86_64 0:1.19.0-2.fc44 fedora 2.5 MiB urw-base35-bookman-fonts noarch 0:20200910-28.fc45 fedora 1.4 MiB urw-base35-c059-fonts noarch 0:20200910-28.fc45 fedora 1.4 MiB urw-base35-d050000l-fonts noarch 0:20200910-28.fc45 fedora 84.3 KiB urw-base35-fonts noarch 0:20200910-28.fc45 fedora 5.3 KiB urw-base35-fonts-common noarch 0:20200910-28.fc45 fedora 37.4 KiB urw-base35-gothic-fonts noarch 0:20200910-28.fc45 fedora 1.2 MiB urw-base35-nimbus-mono-ps-fonts noarch 0:20200910-28.fc45 fedora 1.0 MiB urw-base35-nimbus-roman-fonts noarch 0:20200910-28.fc45 fedora 1.4 MiB urw-base35-nimbus-sans-fonts noarch 0:20200910-28.fc45 fedora 2.4 MiB urw-base35-p052-fonts noarch 0:20200910-28.fc45 fedora 1.5 MiB urw-base35-standard-symbols-ps-fonts noarch 0:20200910-28.fc45 fedora 64.9 KiB urw-base35-z003-fonts noarch 0:20200910-28.fc45 fedora 390.8 KiB vim-filesystem noarch 2:9.2.280-1.fc45 fedora 40.0 B web-assets-filesystem noarch 0:5-25.fc44 fedora 34.0 B xapian-core-libs x86_64 0:1.4.31-1.fc45 fedora 2.1 MiB xml-common noarch 0:0.6.3-68.fc44 fedora 78.4 KiB yaksa x86_64 0:0.3-9.fc44 fedora 44.8 MiB zlib-ng x86_64 0:2.3.3-5.fc45 fedora 186.0 KiB Transaction Summary: Installing: 386 packages Total size of inbound packages is 518 MiB. Need to download 518 MiB. After this operation, 2 GiB extra will be used (install 2 GiB, remove 0 B). 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xapian-core-libs-0:1.4.31-1.f 100% | 100.6 MiB/s | 824.5 KiB | 00m00s [ 40/386] emacs-filesystem-1:30.2-2.fc4 100% | 3.9 MiB/s | 8.0 KiB | 00m00s [ 41/386] less-0:692-5.fc45.x86_64 100% | 43.3 MiB/s | 221.7 KiB | 00m00s [ 42/386] man-db-0:2.13.1-3.fc44.x86_64 100% | 195.1 MiB/s | 1.4 MiB | 00m00s [ 43/386] vim-filesystem-2:9.2.280-1.fc 100% | 5.2 MiB/s | 15.9 KiB | 00m00s [ 44/386] hdf5-openmpi-0:1.14.6-7.fc44. 100% | 187.9 MiB/s | 2.1 MiB | 00m00s [ 45/386] libaec-devel-0:1.1.6-1.fc45.x 100% | 3.7 MiB/s | 15.2 KiB | 00m00s [ 46/386] openmpi-0:5.0.10-1.fc45.x86_6 100% | 177.6 MiB/s | 2.1 MiB | 00m00s [ 47/386] pmix-0:5.0.7-3.fc44.x86_64 100% | 146.2 MiB/s | 748.3 KiB | 00m00s [ 48/386] rpm-mpi-hooks-0:8-13.fc44.noa 100% | 2.6 MiB/s | 10.9 KiB | 00m00s [ 49/386] petsc-openmpi-0:3.24.6-1.fc45 100% | 20.6 MiB/s | 9.0 MiB | 00m00s [ 50/386] python3-matplotlib-0:3.10.8-2 100% | 49.0 MiB/s | 7.9 MiB | 00m00s [ 51/386] python3-natsort-0:8.4.0-9.fc4 100% | 1.1 MiB/s | 83.5 KiB | 00m00s [ 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| 75.8 KiB | 00m00s [320/386] google-droid-sans-fonts-0:202 100% | 122.8 MiB/s | 2.7 MiB | 00m00s [321/386] libXt-0:1.3.1-4.fc44.x86_64 100% | 20.1 MiB/s | 184.9 KiB | 00m00s [322/386] libijs-0:0.35-26.fc44.x86_64 100% | 7.3 MiB/s | 29.7 KiB | 00m00s [323/386] libpaper-1:2.1.1-10.fc44.x86_ 100% | 6.5 MiB/s | 26.8 KiB | 00m00s [324/386] cairo-gobject-0:1.18.4-6.fc44 100% | 2.8 MiB/s | 17.0 KiB | 00m00s [325/386] libdav1d-0:1.5.3-1.fc45.x86_6 100% | 89.5 MiB/s | 641.2 KiB | 00m00s [326/386] libXft-0:2.3.8-10.fc44.x86_64 100% | 36.3 MiB/s | 74.3 KiB | 00m00s [327/386] libthai-0:0.1.30-2.fc44.x86_6 100% | 42.2 MiB/s | 216.1 KiB | 00m00s [328/386] urw-base35-bookman-fonts-0:20 100% | 103.2 MiB/s | 845.3 KiB | 00m00s [329/386] urw-base35-c059-fonts-0:20200 100% | 121.8 MiB/s | 872.9 KiB | 00m00s [330/386] urw-base35-d050000l-fonts-0:2 100% | 24.5 MiB/s | 75.4 KiB | 00m00s [331/386] urw-base35-fonts-common-0:202 100% | 5.1 MiB/s | 20.8 KiB | 00m00s [332/386] urw-base35-gothic-fonts-0:202 100% | 89.4 MiB/s | 640.9 KiB | 00m00s [333/386] urw-base35-nimbus-mono-ps-fon 100% | 110.8 MiB/s | 793.9 KiB | 00m00s [334/386] poppler-0:26.01.0-7.fc45.x86_ 100% | 28.5 MiB/s | 1.4 MiB | 00m00s [335/386] urw-base35-nimbus-roman-fonts 100% | 119.0 MiB/s | 853.1 KiB | 00m00s [336/386] urw-base35-nimbus-sans-fonts- 100% | 92.9 MiB/s | 1.3 MiB | 00m00s [337/386] urw-base35-standard-symbols-p 100% | 18.8 MiB/s | 57.8 KiB | 00m00s [338/386] urw-base35-z003-fonts-0:20200 100% | 89.5 MiB/s | 275.1 KiB | 00m00s [339/386] urw-base35-p052-fonts-0:20200 100% | 45.2 MiB/s | 972.4 KiB | 00m00s [340/386] libaom-0:3.13.3-2.fc45.x86_64 100% | 188.1 MiB/s | 1.9 MiB | 00m00s [341/386] libyuv-0:0-0.62.20260213git60 100% | 29.2 MiB/s | 209.4 KiB | 00m00s [342/386] rav1e-libs-0:0.8.1-3.fc44.x86 100% | 152.6 MiB/s | 1.1 MiB | 00m00s [343/386] svt-av1-libs-0:3.1.2-2.fc44.x 100% | 168.8 MiB/s | 2.0 MiB | 00m00s [344/386] libseccomp-0:2.6.0-3.fc44.x86 100% | 18.8 MiB/s | 77.1 KiB | 00m00s [345/386] avahi-libs-0:0.9~rc2-8.fc44.x 100% | 17.5 MiB/s | 71.7 KiB | 00m00s [346/386] cups-filesystem-1:2.4.16-7.fc 100% | 4.0 MiB/s | 12.3 KiB | 00m00s [347/386] glycin-loaders-0:2.1.1-1.fc45 100% | 142.5 MiB/s | 3.3 MiB | 00m00s [348/386] libICE-0:1.1.2-4.fc44.x86_64 100% | 19.6 MiB/s | 80.2 KiB | 00m00s [349/386] libSM-0:1.2.5-4.fc44.x86_64 100% | 14.5 MiB/s | 44.6 KiB | 00m00s [350/386] libdatrie-0:0.2.14-2.fc44.x86 100% | 8.1 MiB/s | 33.1 KiB | 00m00s [351/386] gpgmepp-0:2.0.1-3.fc44.x86_64 100% | 48.6 MiB/s | 149.2 KiB | 00m00s [352/386] nspr-0:4.38.2-7.fc45.x86_64 100% | 28.0 MiB/s | 143.4 KiB | 00m00s [353/386] nss-0:3.122.0-1.fc45.x86_64 100% | 123.4 MiB/s | 758.4 KiB | 00m00s [354/386] libvmaf-0:3.1.0-1.fc45.x86_64 100% | 84.9 MiB/s | 260.9 KiB | 00m00s [355/386] poppler-data-0:0.4.11-11.fc44 100% | 163.9 MiB/s | 2.0 MiB | 00m00s [356/386] bubblewrap-0:0.11.0-4.fc44.x8 100% | 16.2 MiB/s | 66.3 KiB | 00m00s [357/386] libjxl-1:0.11.1-8.fc44.x86_64 100% | 242.7 MiB/s | 1.2 MiB | 00m00s [358/386] libheif-0:1.21.2-3.fc45.x86_6 100% | 81.8 MiB/s | 669.9 KiB | 00m00s [359/386] dbus-libs-1:1.16.2-1.fc45.x86 100% | 37.9 MiB/s | 155.2 KiB | 00m00s [360/386] gpgme-0:2.0.1-3.fc44.x86_64 100% | 75.4 MiB/s | 231.7 KiB | 00m00s [361/386] nss-sysinit-0:3.122.0-1.fc45. 100% | 9.5 MiB/s | 19.4 KiB | 00m00s [362/386] nss-softokn-0:3.122.0-1.fc45. 100% | 61.4 MiB/s | 440.4 KiB | 00m00s [363/386] nss-util-0:3.122.0-1.fc45.x86 100% | 17.6 MiB/s | 90.3 KiB | 00m00s [364/386] libopenjph-0:0.26.3-1.fc45.x8 100% | 39.3 MiB/s | 161.0 KiB | 00m00s [365/386] noopenh264-0:2.6.0-4.fc44.x86 100% | 5.4 MiB/s | 22.0 KiB | 00m00s [366/386] highway-0:1.3.0-2.fc44.x86_64 100% | 169.6 MiB/s | 694.6 KiB | 00m00s [367/386] nss-softokn-freebl-0:3.122.0- 100% | 60.8 MiB/s | 373.7 KiB | 00m00s [368/386] gobject-introspection-0:1.86. 100% | 39.9 MiB/s | 122.7 KiB | 00m00s [369/386] pcre2-utf16-0:10.47-1.fc44.1. 100% | 50.1 MiB/s | 256.3 KiB | 00m00s [370/386] pcre2-utf32-0:10.47-1.fc44.1. 100% | 26.3 MiB/s | 242.2 KiB | 00m00s [371/386] pcre2-devel-0:10.47-1.fc44.1. 100% | 29.9 MiB/s | 550.9 KiB | 00m00s [372/386] kernel-headers-0:7.0.0-62.fc4 100% | 173.9 MiB/s | 1.7 MiB | 00m00s [373/386] libtirpc-0:1.3.7-2.fc44.x86_6 100% | 48.5 MiB/s | 99.3 KiB | 00m00s [374/386] annobin-plugin-gcc-0:13.07-1. 100% | 95.4 MiB/s | 683.8 KiB | 00m00s [375/386] gcc-plugin-annobin-0:16.0.1-0 100% | 11.9 MiB/s | 48.8 KiB | 00m00s [376/386] js-doxygen-2:1.16.1-3.fc45.no 100% | 35.7 MiB/s | 109.7 KiB | 00m00s [377/386] hdf-libs-0:4.3.0-6.fc45.x86_6 100% | 699.2 KiB/s | 306.3 KiB | 00m00s [378/386] web-assets-filesystem-0:5-25. 100% | 2.5 MiB/s | 7.8 KiB | 00m00s [379/386] pyproject-rpm-macros-0:1.19.0 100% | 21.9 MiB/s | 44.9 KiB | 00m00s [380/386] python-rpm-macros-0:3.14-12.f 100% | 9.8 MiB/s | 20.0 KiB | 00m00s [381/386] python3-rpm-generators-0:14-1 100% | 9.3 MiB/s | 28.5 KiB | 00m00s [382/386] python3-rpm-macros-0:3.14-12. 100% | 6.1 MiB/s | 12.5 KiB | 00m00s [383/386] cmake-rpm-macros-0:4.3.0-1.fc 100% | 2.2 MiB/s | 13.8 KiB | 00m00s [384/386] ninja-build-0:1.13.2-2.fc44.x 100% | 66.4 MiB/s | 203.9 KiB | 00m00s [385/386] annobin-docs-0:13.07-1.fc45.n 100% | 200.6 KiB/s | 88.3 KiB | 00m00s [386/386] cpp-0:16.0.1-0.10.fc45.x86_64 100% | 2.9 MiB/s | 14.5 MiB | 00m05s -------------------------------------------------------------------------------- [386/386] Total 100% | 47.6 MiB/s | 518.2 MiB | 00m11s Running transaction [ 1/388] Verify package files 100% | 193.0 B/s | 386.0 B | 00m02s [ 2/388] Prepare transaction 100% | 1.4 KiB/s | 386.0 B | 00m00s [ 3/388] Installing libgfortran-0:16.0 100% | 310.0 MiB/s | 3.4 MiB | 00m00s [ 4/388] Installing glib2-0:2.88.0-1.f 100% | 235.2 MiB/s | 15.3 MiB | 00m00s [ 5/388] Installing cmake-filesystem-0 100% | 4.6 MiB/s | 9.4 KiB | 00m00s [ 6/388] Installing libjpeg-turbo-0:3. 100% | 269.3 MiB/s | 827.4 KiB | 00m00s [ 7/388] Installing fonts-filesystem-1 100% | 0.0 B/s | 788.0 B | 00m00s [ 8/388] Installing urw-base35-fonts-c 100% | 37.5 MiB/s | 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Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1776384000 Wrote: /builddir/build/SRPMS/bout++-5.2.0-11.fc45.src.rpm Updating and loading repositories: fedora 100% | 370.1 KiB/s | 21.8 KiB | 00m00s Copr repository 100% | 126.5 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "chrpath-0.16-28.fc44.x86_64" is already installed. Package "cmake-4.3.0-1.fc45.x86_64" is already installed. Package "doxygen-2:1.16.1-3.fc45.x86_64" is already installed. Package "environment-modules-5.6.1-3.fc44.x86_64" is already installed. Package "fftw-devel-3.3.10-17.fc44.x86_64" is already installed. Package "flexiblas-devel-3.5.0-2.fc44.x86_64" is already installed. Package "fmt-devel-11.2.0-4.fc44.x86_64" is already installed. Package "gcc-c++-16.0.1-0.10.fc45.x86_64" is already installed. Package "gettext-devel-1.0-1.fc45.x86_64" is already installed. Package "hdf5-devel-1.14.6-7.fc44.x86_64" is already installed. Package "hdf5-mpich-devel-1.14.6-7.fc44.x86_64" is already installed. Package "hdf5-openmpi-devel-1.14.6-7.fc44.x86_64" is already installed. Package "m4-1.4.21-1.fc45.x86_64" is already installed. Package "mpark-variant-devel-1.4.0-16.fc44.x86_64" is already installed. Package "mpich-devel-4.2.2-7.fc44.x86_64" is already installed. Package "netcdf-cxx4-devel-4.3.1-22.fc44.x86_64" is already installed. Package "netcdf-devel-4.9.3-2.fc44.x86_64" is already installed. Package "openmpi-devel-5.0.10-1.fc45.x86_64" is already installed. Package "petsc-mpich-devel-3.24.6-1.fc45.x86_64" is already installed. Package "petsc-openmpi-devel-3.24.6-1.fc45.x86_64" is already installed. Package "python3-3.14.4-1.fc45.x86_64" is already installed. Package "python3-boutdata-0.3.0-7.fc44.noarch" is already installed. Package "python3-boutdata-0.3.0-7.fc44.noarch" is already installed. Package "python3-cython-3.2.4-3.fc44.x86_64" is already installed. Package "python3-devel-3.14.4-1.fc45.x86_64" is already installed. Package "python3-jinja2-3.1.6-7.fc44.noarch" is already installed. Package "python3-netcdf4-1.7.3-2.fc44.x86_64" is already installed. Package "python3-numpy-1:2.4.4-1.fc45.x86_64" is already installed. Package "python3-scipy-1.16.2-3.fc44.x86_64" is already installed. Package "python3-sphinx-1:9.1.0-1.fc45.noarch" is already installed. Package "python3-tables-3.10.2-8.fc44.x86_64" is already installed. Package "python3-zoidberg-0.2.2-2.fc44.noarch" is already installed. Package "sundials-devel-7.6.0-1.fc45.x86_64" is already installed. Package "sundials-mpich-devel-7.6.0-1.fc45.x86_64" is already installed. Package "sundials-openmpi-devel-7.6.0-1.fc45.x86_64" is already installed. Package "zlib-ng-compat-devel-2.3.3-5.fc45.x86_64" is already installed. Nothing to do. Finish: build setup for bout++-5.2.0-11.fc45.src.rpm Start: rpmbuild bout++-5.2.0-11.fc45.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1776384000 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.EZQEgC Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.a4gdJ2 + umask 022 + cd /builddir/build/BUILD/bout++-5.2.0-build + cd /builddir/build/BUILD/bout++-5.2.0-build + rm -rf BOUT++-v5.2.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/BOUT++-v5.2.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd BOUT++-v5.2.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/3188.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/bout++-expose-std-erase.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/bout++-fmt12-runtime.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/bout++-fake-mesh-accumulate.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/test-timeout.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/3111.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + sed -e 's/html_theme = "sphinx_book_theme"/html_theme = "sphinxdoc"/' -i manual/sphinx/conf.py + rm -rf externalpackages/mpark.variant/ + mkdir -p externalpackages/mpark.variant/include/ + rm -rf tools/pylib/boutdata + rm -rf tools/pylib/boututils ++ find -L tools/pylib/ -type f ++ grep -v _boutcore_build + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/boutconfig/__init__.py.in + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/boutconfig/__init__.py.cin + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/setup.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/scan_enums.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/resolve_enum_inv.pyx.jinja + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/resolve_enum.pxd.jinja + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/other_enums.hxx + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.h.jinja + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.cxx.jinja + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/geninput.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/generate.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/debug_setup.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/debug_helper.hxx + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp_openmpi_compat.hxx + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp.pyx.jinja + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutexception_helper.hxx + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutexception_helper.cxx + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutcpp.pxd.jinja + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/bout_options.pxd + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/backend.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/Makefile + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/GENERATION.md + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/CMakeLists.txt + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/_boutpp_build/.gitignore + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/README.md + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/Makefile + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/.gitignore + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.CeX54S + umask 022 + cd /builddir/build/BUILD/bout++-5.2.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BOUT++-v5.2.0 + for mpi in openmpi mpich + '[' openmpi = mpich ']' + '[' openmpi = openmpi ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=$' \t\n' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode=$'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=$' \t\n' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval $'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval $'MPI_COMPILER=\'openmpi-x86_64\'; export MPI_COMPILER;\nLD_LIBRARY_PATH=\'/usr/lib64/openmpi/lib\'; export LD_LIBRARY_PATH;\nMPI_MAN=\'/usr/share/man/openmpi-x86_64\'; export MPI_MAN;\nMANPATH=\'/usr/share/man/openmpi-x86_64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/openmpi-x86_64\'; export MPI_INCLUDE;\n_LMFILES_=\'/usr/share/modulefiles/mpi/openmpi-x86_64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/openmpi-x86_64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/openmpi\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.14/site-packages/openmpi\'; export MPI_PYTHON3_SITEARCH;\nMPI_HOME=\'/usr/lib64/openmpi\'; export MPI_HOME;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/openmpi\'; export MPI_FORTRAN_MOD_DIR;\n__MODULES_LMALTNAME=\'mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest\'; export __MODULES_LMALTNAME;\n__MODULES_LMCONFLICT=\'mpi/openmpi-x86_64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SUFFIX=\'_openmpi\'; export MPI_SUFFIX;\nMPI_SYSCONFIG=\'/etc/openmpi-x86_64\'; export MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_LIB=\'/usr/lib64/openmpi/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/openmpi/bin\'; export MPI_BIN;\ntest 0;' ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.14/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B x86_64-redhat-linux-gnu_openmpi -G Ninja -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr/lib64/openmpi -DCMAKE_INSTALL_LIBDIR:PATH=lib -DCMAKE_INSTALL_INCLUDEDIR:PATH=/usr/include/openmpi-x86_64/bout++/ -DCMAKE_INSTALL_PYTHON_SITEARCH:PATH=/usr/lib64/python3.14/site-packages/openmpi -DCMAKE_INSTALL_DATAROOTDIR:PATH=/usr/share -DBOUT_ENABLE_MPI:BOOL=ON -DBOUT_USE_FFTW=ON -DBOUT_USE_NETCDF=ON -DBOUT_USE_SCOREP=OFF -DBOUT_USE_SYSTEM_MPARK_VARIANT=ON -DBOUT_USE_LAPACK=ON -DBOUT_USE_NLS=ON -DBOUT_USE_SYSTEM_FMT=ON -DBOUT_USE_UUID_SYSTEM_GENERATOR=ON -DBOUT_TEST_TIMEOUT=900 -DBOUT_BUILD_DOCS=ON -DBOUT_USE_PETSC=ON -DBOUT_USE_SUNDIALS=ON -- Configuring BOUT++ version 5.2.1 -- The CXX compiler identification is GNU 16.0.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python3: /usr/bin/python3.14 (found version "3.14.4") found components: Interpreter -- Could NOT find ClangFormat (missing: ClangFormat_BIN) CMake Warning (dev) at CMakeLists.txt:397 (message): 'src/field/generated_fieldops.cxx' will not be regenerated when you make changes to either 'src/field/gen_fieldops.py' or 'src/field/gen_fieldops.jinja'. This is because either Python3 or clang-format is missing (see above messages for more information) or BOUT_GENERATE_FIELDOPS is OFF (current value: OFF). This warning is only important for BOUT++ developers and can otherwise be safely ignored. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Python3: /usr/bin/python3.14 (found suitable version "3.14.4", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed -- Found Numpy: /usr/include (found version "2.4.4") -- Found Cython: TRUE (found version "3.2.4") -- Found Bash: /usr/bin/bash (found version "5.3.9") -- Building BOUT++ Python interface -- Found MPI_CXX: /usr/lib64/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Enable OpenMP: OFF -- HYPRE support: OFF -- Found PkgConfig: /usr/bin/pkg-config (found version "2.5.1") -- Checking for one of the modules 'PETSc>3.4.0;petsc>3.4.0' -- Found PETSc: /usr/include/openmpi-x86_64/petsc -- PETSc support: ON -- Using external mpark.variant -- Using external fmt CMake Deprecation Warning at externalpackages/PVODE/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- PVODE support: ON -- The C compiler identification is GNU 16.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Found netCDF: /usr/lib64/libnetcdf.so (found version "4.9.3") -- Found netCDFCxx version 4.3.1 -- Found netCDFCxx: /usr/lib64/libnetcdf_c++4.so (found version "4.3.1") -- NetCDF support: ON -- ADIOS2 support: OFF -- Found FFTW: /usr/lib64/libfftw3.so -- FFTW support: ON -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib64/libflexiblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- Found LAPACK: /usr/lib64/libflexiblas.so;-lm;-ldl -- LAPACK support: TRUE -- SLEPc support: OFF -- SUNDIALS support: ON -- Found Gettext: /usr/bin/msgmerge (found version "1.0") -- Found Intl: built in to C library -- libuuid not found, using fallback UUID generator -- UUID_SYSTEM_GENERATOR: FALSE -- Enable coverage: OFF -- Git revision: Unknown -- Performing Test HAS_FLAG__Wnull_dereference -- Performing Test HAS_FLAG__Wnull_dereference - Success -- Warning flag is supported by compiler: -Wnull-dereference -- Found negative flag: -Wno-cast-function-type replaced with -Wcast-function-type -- Performing Test HAS_FLAG__Wno_cast_function_type -- Performing Test HAS_FLAG__Wno_cast_function_type - Success -- Warning flag is supported by compiler: -Wno-cast-function-type -- Runtime checking level: CHECK=2 -- Message stack: BOUT_USE_MSGSTACK=ON -- Extra debug output: BOUT_USE_OUTPUT_DEBUG=OFF -- Signal handling: BOUT_USE_SIGNAL=ON -- Output coloring: BOUT_USE_COLOR=ON -- Field name tracking: BOUT_USE_TRACK=ON -- Signalling floating point exceptions: BOUT_USE_SIGFPE=OFF -- Enable backtrace: BOUT_USE_BACKTRACE=ON -- Performing Test HAS_PRETTY_FUNCTION -- Performing Test HAS_PRETTY_FUNCTION - Success -- Setting build type to 'RelWithDebInfo' as none was specified. -- Not building test test-laplace-hypre3d, requirement not met: BOUT_HAS_HYPRE -- Not building test test-laplacexy2-hypre, requirement not met: BOUT_HAS_HYPRE -- Not building test test-options-adios, requirement not met: BOUT_HAS_ADIOS2 -- Not building test test-slepc-solver, requirement not met: BOUT_HAS_SLEPC -- Not building test MMS-advection-arakawa, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-advection-central, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-advection-upwind, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-advection-weno3, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-diffusion2, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-hw, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-laplace, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-advection, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-d2dx2, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-d2dz2, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-diffusion, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-time, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-time-petsc, requirement not met: BOUT_RUN_ALL_TESTS -- Not building example test_laplacexy_hypre, requirement not met: BOUT_HAS_HYPRE -------------------------------- BOUT++ Configuration Summary -------------------------------- Bundled PVODE support : ON PETSc support : ON SLEPc support : OFF SUNDIALS support : ON HYPRE support : OFF NetCDF support : ON ADIOS2 support : OFF FFTW support : ON LAPACK support : TRUE OpenMP support : OFF Natural language support : ON ScoreP support : OFF System UUID generator : FALSE Extra debug output : OFF Runtime error check level: 2 Signal handling : ON Output coloring : ON Field name tracking : ON Floating point exceptions: OFF Backtrace enabled : ON RAJA enabled : OFF Umpire enabled : OFF Caliper enabled : OFF CUDA enabled : OFF Metric type : 2D Python API support : ON Sanitizers enabled : None === Python === Make sure that the tools/pylib directory is in your PYTHONPATH e.g. by adding to your ~/.bashrc file export PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib:/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib:$PYTHONPATH *** Now run `cmake --build /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi` to compile BOUT++ *** -- Configuring done (3.3s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: BOUT_BUILD_DOCS CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_VERBOSE_MAKEFILE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi + /usr/bin/cmake --build x86_64-redhat-linux-gnu_openmpi -j4 --verbose Change Dir: '/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi' Run Build Command(s): /usr/bin/ninja-build -v -j 4 [1/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvspgmr.cpp [2/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/llnlmath.cpp [3/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:429: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 429 | #pragma omp parallel for reduction(+: sum) /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:485: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 485 | #pragma omp parallel for reduction(+: sum) /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:543: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 543 | #pragma omp parallel for reduction(+: sum) /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:565: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 565 | #pragma omp parallel for reduction(+: sum) /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:583: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 583 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:698: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 698 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:714: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 714 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:730: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 730 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:745: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 745 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:761: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 761 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:777: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 777 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:793: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 793 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:809: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 809 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:824: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 824 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:831: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 831 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:837: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 837 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:850: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 850 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp: In function ‘void pvode::N_VLinearSum(real, N_Vector, real, N_Vector, N_Vector)’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:189:12: warning: unused variable ‘v’ [-Wunused-variable] 189 | N_Vector v, v1, v2; | ^ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp: In function ‘pvode::real pvode::N_VWL2Norm(N_Vector, N_Vector)’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:533:14: warning: variable ‘N_global’ set but not used [-Wunused-but-set-variable=] 533 | integer N, N_global; | ^~~~~~~~ [4/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp: In function ‘int pvode::SpgmrSolve(SpgmrMem, void*, N_Vector, N_Vector, int, int, real, int, void*, N_Vector, N_Vector, ATimesFn, PSolveFn, real*, int*, int*)’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp:159:8: warning: unused variable ‘s_r0_norm’ [-Wunused-variable] 159 | real s_r0_norm, beta, rotation_product, r_norm, s_product, rho; | ^~~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp:328:17: warning: ‘krydim’ may be used uninitialized [-Wmaybe-uninitialized] 328 | for (i=1; i <= krydim; i++) yg[i]=ZERO; | ~~^~~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp:161:36: note: ‘krydim’ was declared here 161 | int i, j, k, l, l_plus_1, l_max, krydim, ier, ntries; | ^~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp:386:3: warning: ‘rho’ may be used uninitialized [-Wmaybe-uninitialized] 386 | if (rho < beta) { | ^~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp:159:62: note: ‘rho’ was declared here 159 | real s_r0_norm, beta, rotation_product, r_norm, s_product, rho; | ^~~ [5/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvdiag.cpp [6/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/iterativ.cpp [7/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/smalldense.cpp /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/smalldense.cpp: In function ‘pvode::integer pvode::gefa(real**, integer, integer*)’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/smalldense.cpp:82:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 82 | if (swap = (l != k)) { | ~~~~~^~~~~~~~~~ [8/151] /usr/bin/g++ -Dpvpre_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/precon/pvbbdpre.cpp [9/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/locale/de/ && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/locale/de/libbout.gmo /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/locale/de/libbout.po [10/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/locale/es/ && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/locale/es/libbout.gmo /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/locale/es/libbout.po [11/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/locale/fr/ && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/locale/fr/libbout.gmo /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/locale/fr/libbout.po [12/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/locale/zh_CN/ && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/locale/zh_CN/libbout.gmo /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/locale/zh_CN/libbout.po [13/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/locale/zh_TW/ && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/locale/zh_TW/libbout.gmo /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/locale/zh_TW/libbout.po [14/151] /usr/bin/g++ -Dpvpre_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/precon/band.cpp [15/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp In function ‘pvode::CVnlsFunctional(pvode::CVodeMemRec*)’, inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1826:45, inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1358:18, inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:882:19: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1876:49: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized] 1876 | if ((m==maxcor) || ((m >= 2) && (del > RDIV * delp))) | ^ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1843:13: note: ‘delp’ was declared here 1843 | real del, delp, dcon; | ^~~~ In function ‘pvode::CVNewtonIteration(pvode::CVodeMemRec*)’, inlined from ‘pvode::CVnlsNewton(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1944:28, inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1827:41, inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1358:18, inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:882:19: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:2021:50: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized] 2021 | if ((m == maxcor) || ((m >= 2) && (del > RDIV*delp))) { | ^ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1971:13: note: ‘delp’ was declared here 1971 | real del, delp, dcon; | ^~~~ [16/151] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g 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externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o -Wl,-rpath,/usr/lib64/openmpi/lib: /usr/lib64/openmpi/lib/libmpi.so && : [17/151] /usr/bin/cmake -E cmake_symlink_library lib/libpvode.so.1.0.0 lib/libpvode.so.1.0.0 lib/libpvode.so && : [18/151] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 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/usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx: In function ‘void verifyNumPoints(BoundaryRegion*, int)’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:80:21: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 80 | if (mesh->firstY()) { | ~~~~~~~~~~~~^~ In file included from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/field_factory.hxx:32, from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_standard.hxx:9, from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:1: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/mesh.hxx:437:66: note: declared here 437 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:83:20: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 83 | if (mesh->lastY()) { | ~~~~~~~~~~~^~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/mesh.hxx:441:65: note: declared here 441 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:473:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 473 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz), | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 | t); | ~~ In file included from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/field_data.hxx:50, from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/field.hxx:39, from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/field2d.hxx:35, from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_op.hxx:9, from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_standard.hxx:6: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/expressionparser.hxx:69:3: note: declared here 69 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:517:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 517 | val = fg->generate(xnorm, TWOPI * ynorm, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 518 | TWOPI * (zk - 0.5) / (mesh->LocalNz), t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/expressionparser.hxx:69:3: note: declared here 69 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O3::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:978:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 978 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz), | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 979 | t); | ~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/expressionparser.hxx:69:3: note: declared here 69 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O4::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:1444:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 1444 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz), | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1445 | t); | ~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/expressionparser.hxx:69:3: note: declared here 69 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryNeumann::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:2152:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 2152 | val = fg->generate(xnorm, TWOPI * ynorm, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2153 | TWOPI * (zk - 0.5) / (mesh->LocalNz), t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/expressionparser.hxx:69:3: note: declared here 69 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ [68/151] /usr/bin/g++ -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromoptions.cxx [69/151] /usr/bin/g++ -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx: In instantiation of ‘bool GridFile::getField(Mesh*, T&, const std::string&, BoutReal, CELL_LOC) [with T = FieldPerp; std::string = std::__cxx11::basic_string; BoutReal = double]’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/griddata.hxx:115:20: required from here 115 | return getField(m, var, name, def, location); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx:211:7: warning: variable ‘total_grid_yguards’ set but not used [-Wunused-but-set-variable=] 211 | int total_grid_yguards = 2 * grid_yguards; | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx: In instantiation of ‘bool GridFile::getField(Mesh*, T&, const std::string&, BoutReal, CELL_LOC) [with T = Field2D; std::string = std::__cxx11::basic_string; BoutReal = double]’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx:127:18: required from here 127 | return getField(m, var, name, def, location); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx:211:7: warning: variable ‘total_grid_yguards’ set but not used [-Wunused-but-set-variable=] 211 | int total_grid_yguards = 2 * grid_yguards; | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx: In instantiation of ‘bool GridFile::getField(Mesh*, T&, const std::string&, BoutReal, CELL_LOC) [with T = Field3D; std::string = std::__cxx11::basic_string; BoutReal = double]’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx:131:18: required from here 131 | return getField(m, var, name, def, location); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx:211:7: warning: variable ‘total_grid_yguards’ set but not used [-Wunused-but-set-variable=] 211 | int total_grid_yguards = 2 * grid_yguards; | ^~~~~~~~~~~~~~~~~~ [70/151] /usr/bin/g++ -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 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CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o CMakeFiles/bout++.dir/src/sys/output.cxx.o CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o CMakeFiles/bout++.dir/src/sys/range.cxx.o CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o CMakeFiles/bout++.dir/src/sys/timer.cxx.o CMakeFiles/bout++.dir/src/sys/type_name.cxx.o CMakeFiles/bout++.dir/src/sys/utils.cxx.o CMakeFiles/bout++.dir/bout++-time.cxx.o -Wl,-rpath,/usr/lib64/openmpi/lib:/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/lib: /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/libfmt.so.11.2.0 lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl -ldl /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so lib/libpvode.so.1.0.0 /usr/lib64/libnetcdf.so /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.6.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.6.0 /usr/lib64/openmpi/lib/libsundials_ida.so.7.6.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.6.0 /usr/lib64/openmpi/lib/libsundials_core.so.7.6.0 /usr/lib64/openmpi/lib/libmpi.so && : [140/151] /usr/bin/cmake -E cmake_symlink_library lib/libbout++.so.5.2.0 lib/libbout++.so.5.2.0 lib/libbout++.so && : [141/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.14 generate.py helper.h.jinja /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/helper.h [142/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.14 generate.py helper.cxx.jinja /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/helper.cxx [143/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.14 generate.py boutcpp.pxd.jinja /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/boutcpp.pxd [144/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.14 generate.py boutpp.pyx.jinja /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/boutpp.pyx [145/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.14 generate.py resolve_enum.pxd.jinja /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/resolve_enum.pxd [146/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy boutpp.pyx libboutpp.pyx && /usr/bin/python3.14 -m cython libboutpp.pyx --cplus -3 -X binding=True -X embedsignature=True warning: resolve_enum.pxd:49:21: 'deflt' redeclared warning: resolve_enum.pxd:189:24: 'Standard' redeclared warning: resolve_enum.pxd:223:15: 'Standard' redeclared performance hint: libboutpp.pyx:2149:0: Exception check on 'callback' will always require the GIL to be acquired. Possible solutions: 1. Declare 'callback' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'callback' to allow an error code to be returned. [147/151] /usr/bin/g++ -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_314_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build -I/usr/include/python3.14 -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/boutexception_helper.cxx.o -MF tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/boutexception_helper.cxx.o.d -o tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/boutexception_helper.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/boutexception_helper.cxx In file included from /usr/include/python3.14/pyconfig.h:6, from /usr/include/python3.14/Python.h:14, from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/boutexception_helper.cxx:2: /usr/include/python3.14/pyconfig-64.h:2007:9: warning: ‘_POSIX_C_SOURCE’ redefined 2007 | #define _POSIX_C_SOURCE 200809L | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/16/x86_64-redhat-linux/bits/c++config.h:2677, from /usr/include/c++/16/bits/version.h:51, from /usr/include/c++/16/compare:40, from /usr/include/c++/16/array:40, from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boutexception.hxx:6, from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/boutexception_helper.cxx:1: /usr/include/features.h:319:10: note: this is the location of the previous definition 319 | # define _POSIX_C_SOURCE 202405L | ^~~~~~~~~~~~~~~ /usr/include/python3.14/pyconfig-64.h:2043:9: warning: ‘_XOPEN_SOURCE’ redefined 2043 | #define _XOPEN_SOURCE 700 | ^~~~~~~~~~~~~ /usr/include/features.h:234:10: note: this is the location of the previous definition 234 | # define _XOPEN_SOURCE 800 | ^~~~~~~~~~~~~ [148/151] /usr/bin/g++ -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_314_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build -I/usr/include/python3.14 -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/helper.cxx.o -MF tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/helper.cxx.o.d -o tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/helper.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/helper.cxx [149/151] /usr/bin/g++ -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_314_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build -I/usr/include/python3.14 -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64 -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/libboutpp.cpp.o -MF tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/libboutpp.cpp.o.d -o tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/libboutpp.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:37696:46: warning: ‘__pyx_obj_9libboutpp_Vector2D* __pyx_f_9libboutpp_v2dFromObj(Vector2D)’ defined but not used [-Wunused-function] 37696 | static struct __pyx_obj_9libboutpp_Vector2D *__pyx_f_9libboutpp_v2dFromObj(Vector2D __pyx_v_i) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [150/151] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,--dependency-file=tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/link.d -Wl,-soname,libboutpp.cpython-314-x86_64-linux-gnu.so -o tools/pylib/_boutpp_build/libboutpp.cpython-314-x86_64-linux-gnu.so tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/libboutpp.cpp.o tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/helper.cxx.o tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/boutexception_helper.cxx.o -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/lib:/usr/lib64/openmpi/lib: lib/libbout++.so.5.2.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.11.2.0 lib/libpvpre.so.1.0.0 lib/libpvode.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.7.6.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.7.6.0 /usr/lib64/openmpi/lib/libsundials_ida.so.7.6.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.6.6.0 /usr/lib64/openmpi/lib/libsundials_core.so.7.6.0 /usr/lib64/openmpi/lib/libmpi.so -ldl && : [151/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/libboutpp.cpython-314-x86_64-linux-gnu.so /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tools/pylib/_boutpp_build/../boutpp/__init__.py + '[' openmpi = mpich ']' + '[' openmpi = openmpi ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=$' \t\n' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/openmpi/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode=$'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=$' \t\n' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval $'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval $'unset MPI_COMPILER;\nunset LD_LIBRARY_PATH;\nunset MPI_MAN;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_HOME;\nunset MPI_FORTRAN_MOD_DIR;\nunset __MODULES_LMALTNAME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SUFFIX;\nunset MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in openmpi mpich + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=$' \t\n' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode=$'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\nLOADEDMODULES=\'\'; export LOADEDMODULES;\ntest 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=$' \t\n' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval $'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\nLOADEDMODULES=\'\'; export LOADEDMODULES;\ntest 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ LOADEDMODULES= ++++ export LOADEDMODULES ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval $'LD_LIBRARY_PATH=\'/usr/lib64/mpich/lib\'; export LD_LIBRARY_PATH;\nMPI_COMPILER=\'mpich-x86_64\'; export MPI_COMPILER;\nMANPATH=\'/usr/share/man/mpich-x86_64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/mpich-x86_64\'; export MPI_INCLUDE;\nMPI_MAN=\'/usr/share/man/mpich-x86_64\'; export MPI_MAN;\nMPI_PYTHON_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON_SITEARCH;\n_LMFILES_=\'/usr/share/modulefiles/mpi/mpich-x86_64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/mpich-x86_64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/mpich\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.14/site-packages/mpich\'; export MPI_PYTHON3_SITEARCH;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/mpich\'; export MPI_FORTRAN_MOD_DIR;\nMPI_HOME=\'/usr/lib64/mpich\'; export MPI_HOME;\n__MODULES_LMCONFLICT=\'mpi/mpich-x86_64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SYSCONFIG=\'/etc/mpich-x86_64\'; export MPI_SYSCONFIG;\nMPI_SUFFIX=\'_mpich\'; export MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_PYTHON2_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON2_SITEARCH;\nMPI_LIB=\'/usr/lib64/mpich/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/mpich/bin\'; export MPI_BIN;\ntest 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/mpich ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.14/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B x86_64-redhat-linux-gnu_mpich -G Ninja -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr/lib64/mpich -DCMAKE_INSTALL_LIBDIR:PATH=lib -DCMAKE_INSTALL_INCLUDEDIR:PATH=/usr/include/mpich-x86_64/bout++/ -DCMAKE_INSTALL_PYTHON_SITEARCH:PATH=/usr/lib64/python3.14/site-packages/mpich -DCMAKE_INSTALL_DATAROOTDIR:PATH=/usr/share -DBOUT_ENABLE_MPI:BOOL=ON -DBOUT_USE_FFTW=ON -DBOUT_USE_NETCDF=ON -DBOUT_USE_SCOREP=OFF -DBOUT_USE_SYSTEM_MPARK_VARIANT=ON -DBOUT_USE_LAPACK=ON -DBOUT_USE_NLS=ON -DBOUT_USE_SYSTEM_FMT=ON -DBOUT_USE_UUID_SYSTEM_GENERATOR=ON -DBOUT_TEST_TIMEOUT=900 -DBOUT_BUILD_DOCS=ON -DBOUT_USE_PETSC=ON -DBOUT_USE_SUNDIALS=ON -- Configuring BOUT++ version 5.2.1 -- The CXX compiler identification is GNU 16.0.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python3: /usr/bin/python3.14 (found version "3.14.4") found components: Interpreter -- Could NOT find ClangFormat (missing: ClangFormat_BIN) CMake Warning (dev) at CMakeLists.txt:397 (message): 'src/field/generated_fieldops.cxx' will not be regenerated when you make changes to either 'src/field/gen_fieldops.py' or 'src/field/gen_fieldops.jinja'. This is because either Python3 or clang-format is missing (see above messages for more information) or BOUT_GENERATE_FIELDOPS is OFF (current value: OFF). This warning is only important for BOUT++ developers and can otherwise be safely ignored. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Python3: /usr/bin/python3.14 (found suitable version "3.14.4", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed -- Found Numpy: /usr/include (found version "2.4.4") -- Found Cython: TRUE (found version "3.2.4") -- Found Bash: /usr/bin/bash (found version "5.3.9") -- Building BOUT++ Python interface -- Found MPI_CXX: /usr/lib64/mpich/lib/libmpicxx.so (found version "4.1") -- Found MPI: TRUE (found version "4.1") -- Enable OpenMP: OFF -- HYPRE support: OFF -- Found PkgConfig: /usr/bin/pkg-config (found version "2.5.1") -- Checking for one of the modules 'PETSc>3.4.0;petsc>3.4.0' -- Found PETSc: /usr/include/mpich-x86_64/petsc -- PETSc support: ON -- Using external mpark.variant -- Using external fmt CMake Deprecation Warning at externalpackages/PVODE/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- PVODE support: ON -- The C compiler identification is GNU 16.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Found netCDF: /usr/lib64/libnetcdf.so (found version "4.9.3") -- Found netCDFCxx version 4.3.1 -- Found netCDFCxx: /usr/lib64/libnetcdf_c++4.so (found version "4.3.1") -- NetCDF support: ON -- ADIOS2 support: OFF -- Found FFTW: /usr/lib64/libfftw3.so -- FFTW support: ON -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib64/libflexiblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- Found LAPACK: /usr/lib64/libflexiblas.so;-lm;-ldl -- LAPACK support: TRUE -- SLEPc support: OFF -- SUNDIALS support: ON -- Found Gettext: /usr/bin/msgmerge (found version "1.0") -- Found Intl: built in to C library -- libuuid not found, using fallback UUID generator -- UUID_SYSTEM_GENERATOR: FALSE -- Enable coverage: OFF -- Git revision: Unknown -- Performing Test HAS_FLAG__Wnull_dereference -- Performing Test HAS_FLAG__Wnull_dereference - Success -- Warning flag is supported by compiler: -Wnull-dereference -- Found negative flag: -Wno-cast-function-type replaced with -Wcast-function-type -- Performing Test HAS_FLAG__Wno_cast_function_type -- Performing Test HAS_FLAG__Wno_cast_function_type - Success -- Warning flag is supported by compiler: -Wno-cast-function-type -- Runtime checking level: CHECK=2 -- Message stack: BOUT_USE_MSGSTACK=ON -- Extra debug output: BOUT_USE_OUTPUT_DEBUG=OFF -- Signal handling: BOUT_USE_SIGNAL=ON -- Output coloring: BOUT_USE_COLOR=ON -- Field name tracking: BOUT_USE_TRACK=ON -- Signalling floating point exceptions: BOUT_USE_SIGFPE=OFF -- Enable backtrace: BOUT_USE_BACKTRACE=ON -- Performing Test HAS_PRETTY_FUNCTION -- Performing Test HAS_PRETTY_FUNCTION - Success -- Setting build type to 'RelWithDebInfo' as none was specified. -- Not building test test-laplace-hypre3d, requirement not met: BOUT_HAS_HYPRE -- Not building test test-laplacexy2-hypre, requirement not met: BOUT_HAS_HYPRE -- Not building test test-options-adios, requirement not met: BOUT_HAS_ADIOS2 -- Not building test test-slepc-solver, requirement not met: BOUT_HAS_SLEPC -- Not building test MMS-advection-arakawa, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-advection-central, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-advection-upwind, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-advection-weno3, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-diffusion2, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-hw, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-laplace, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-advection, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-d2dx2, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-d2dz2, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-spatial-diffusion, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-time, requirement not met: BOUT_RUN_ALL_TESTS -- Not building test MMS-time-petsc, requirement not met: BOUT_RUN_ALL_TESTS -- Not building example test_laplacexy_hypre, requirement not met: BOUT_HAS_HYPRE -------------------------------- BOUT++ Configuration Summary -------------------------------- Bundled PVODE support : ON PETSc support : ON SLEPc support : OFF SUNDIALS support : ON HYPRE support : OFF NetCDF support : ON ADIOS2 support : OFF FFTW support : ON LAPACK support : TRUE OpenMP support : OFF Natural language support : ON ScoreP support : OFF System UUID generator : FALSE Extra debug output : OFF Runtime error check level: 2 Signal handling : ON Output coloring : ON Field name tracking : ON Floating point exceptions: OFF Backtrace enabled : ON RAJA enabled : OFF Umpire enabled : OFF Caliper enabled : OFF CUDA enabled : OFF Metric type : 2D Python API support : ON Sanitizers enabled : None === Python === Make sure that the tools/pylib directory is in your PYTHONPATH e.g. by adding to your ~/.bashrc file export PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib:/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib:$PYTHONPATH *** Now run `cmake --build /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich` to compile BOUT++ *** -- Configuring done (3.3s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: BOUT_BUILD_DOCS CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_VERBOSE_MAKEFILE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich + /usr/bin/cmake --build x86_64-redhat-linux-gnu_mpich -j4 --verbose Change Dir: '/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich' Run Build Command(s): /usr/bin/ninja-build -v -j 4 [1/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvspgmr.cpp [2/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/llnlmath.cpp [3/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:429: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 429 | #pragma omp parallel for reduction(+: sum) /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:485: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 485 | #pragma omp parallel for reduction(+: sum) /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:543: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 543 | #pragma omp parallel for reduction(+: sum) /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:565: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 565 | #pragma omp parallel for reduction(+: sum) /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:583: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 583 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:698: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 698 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:714: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 714 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:730: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 730 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:745: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 745 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:761: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 761 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:777: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 777 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:793: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 793 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:809: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 809 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:824: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 824 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:831: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 831 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:837: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 837 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:850: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 850 | #pragma omp parallel for /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp: In function ‘void pvode::N_VLinearSum(real, N_Vector, real, N_Vector, N_Vector)’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:189:12: warning: unused variable ‘v’ [-Wunused-variable] 189 | N_Vector v, v1, v2; | ^ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp: In function ‘pvode::real pvode::N_VWL2Norm(N_Vector, N_Vector)’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/nvector.cpp:533:14: warning: variable ‘N_global’ set but not used [-Wunused-but-set-variable=] 533 | integer N, N_global; | ^~~~~~~~ [4/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/iterativ.cpp [5/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp: In function ‘int pvode::SpgmrSolve(SpgmrMem, void*, N_Vector, N_Vector, int, int, real, int, void*, N_Vector, N_Vector, ATimesFn, PSolveFn, real*, int*, int*)’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp:159:8: warning: unused variable ‘s_r0_norm’ [-Wunused-variable] 159 | real s_r0_norm, beta, rotation_product, r_norm, s_product, rho; | ^~~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp:328:17: warning: ‘krydim’ may be used uninitialized [-Wmaybe-uninitialized] 328 | for (i=1; i <= krydim; i++) yg[i]=ZERO; | ~~^~~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp:161:36: note: ‘krydim’ was declared here 161 | int i, j, k, l, l_plus_1, l_max, krydim, ier, ntries; | ^~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp:386:3: warning: ‘rho’ may be used uninitialized [-Wmaybe-uninitialized] 386 | if (rho < beta) { | ^~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/spgmr.cpp:159:62: note: ‘rho’ was declared here 159 | real s_r0_norm, beta, rotation_product, r_norm, s_product, rho; | ^~~ [6/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvdiag.cpp [7/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/smalldense.cpp /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/smalldense.cpp: In function ‘pvode::integer pvode::gefa(real**, integer, integer*)’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/smalldense.cpp:82:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 82 | if (swap = (l != k)) { | ~~~~~^~~~~~~~~~ [8/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/locale/de/ && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/locale/de/libbout.gmo /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/locale/de/libbout.po [9/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/locale/es/ && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/locale/es/libbout.gmo /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/locale/es/libbout.po [10/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/locale/fr/ && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/locale/fr/libbout.gmo /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/locale/fr/libbout.po [11/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/locale/zh_CN/ && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/locale/zh_CN/libbout.gmo /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/locale/zh_CN/libbout.po [12/151] /usr/bin/g++ -Dpvpre_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/precon/pvbbdpre.cpp [13/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/locale/zh_TW/ && /usr/bin/msgfmt -o /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/locale/zh_TW/libbout.gmo /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/locale/zh_TW/libbout.po [14/151] /usr/bin/g++ -Dpvode_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp In function ‘pvode::CVnlsFunctional(pvode::CVodeMemRec*)’, inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1826:45, inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1358:18, inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:882:19: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1876:49: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized] 1876 | if ((m==maxcor) || ((m >= 2) && (del > RDIV * delp))) | ^ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1843:13: note: ‘delp’ was declared here 1843 | real del, delp, dcon; | ^~~~ In function ‘pvode::CVNewtonIteration(pvode::CVodeMemRec*)’, inlined from ‘pvode::CVnlsNewton(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1944:28, inlined from ‘pvode::CVnls(pvode::CVodeMemRec*, int)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1827:41, inlined from ‘pvode::CVStep(pvode::CVodeMemRec*)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1358:18, inlined from ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’ at /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:882:19: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:2021:50: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized] 2021 | if ((m == maxcor) || ((m >= 2) && (del > RDIV*delp))) { | ^ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp: In function ‘pvode::CVode(void*, double, pvode::nvec_type*, double*, int)’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/source/cvode.cpp:1971:13: note: ‘delp’ was declared here 1971 | real del, delp, dcon; | ^~~~ [15/151] /usr/bin/g++ -Dpvpre_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o -MF externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o.d -o externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/precon/band.cpp [16/151] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=externalpackages/PVODE/CMakeFiles/pvode.dir/link.d -Wl,-soname,libpvode.so.1.0.0 -o lib/libpvode.so.1.0.0 externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o -Wl,-rpath,/usr/lib64/mpich/lib: /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [17/151] /usr/bin/cmake -E cmake_symlink_library lib/libpvode.so.1.0.0 lib/libpvode.so.1.0.0 lib/libpvode.so && : [18/151] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables 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-I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/coordinates_accessor.cxx [67/151] /usr/bin/g++ -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx: In function ‘void verifyNumPoints(BoundaryRegion*, int)’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:80:21: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations] 80 | if (mesh->firstY()) { | ~~~~~~~~~~~~^~ In file included from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/field_factory.hxx:32, from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_standard.hxx:9, from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:1: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/mesh.hxx:437:66: note: declared here 437 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0; | ^~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:83:20: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations] 83 | if (mesh->lastY()) { | ~~~~~~~~~~~^~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/mesh.hxx:441:65: note: declared here 441 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0; | ^~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:473:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 473 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz), | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 | t); | ~~ In file included from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/field_data.hxx:50, from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/field.hxx:39, from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/field2d.hxx:35, from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_op.hxx:9, from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_standard.hxx:6: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/expressionparser.hxx:69:3: note: declared here 69 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:517:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 517 | val = fg->generate(xnorm, TWOPI * ynorm, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 518 | TWOPI * (zk - 0.5) / (mesh->LocalNz), t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/expressionparser.hxx:69:3: note: declared here 69 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O3::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:978:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 978 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz), | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 979 | t); | ~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/expressionparser.hxx:69:3: note: declared here 69 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O4::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:1444:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 1444 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz), | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1445 | t); | ~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/expressionparser.hxx:69:3: note: declared here 69 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryNeumann::apply(Field3D&, BoutReal)’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_standard.cxx:2152:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 2152 | val = fg->generate(xnorm, TWOPI * ynorm, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2153 | TWOPI * (zk - 0.5) / (mesh->LocalNz), t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/expressionparser.hxx:69:3: note: declared here 69 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ [68/151] /usr/bin/g++ -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromoptions.cxx [69/151] /usr/bin/g++ -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx: In instantiation of ‘bool GridFile::getField(Mesh*, T&, const std::string&, BoutReal, CELL_LOC) [with T = FieldPerp; std::string = std::__cxx11::basic_string; BoutReal = double]’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/griddata.hxx:115:20: required from here 115 | return getField(m, var, name, def, location); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx:211:7: warning: variable ‘total_grid_yguards’ set but not used [-Wunused-but-set-variable=] 211 | int total_grid_yguards = 2 * grid_yguards; | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx: In instantiation of ‘bool GridFile::getField(Mesh*, T&, const std::string&, BoutReal, CELL_LOC) [with T = Field2D; std::string = std::__cxx11::basic_string; BoutReal = double]’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx:127:18: required from here 127 | return getField(m, var, name, def, location); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx:211:7: warning: variable ‘total_grid_yguards’ set but not used [-Wunused-but-set-variable=] 211 | int total_grid_yguards = 2 * grid_yguards; | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx: In instantiation of ‘bool GridFile::getField(Mesh*, T&, const std::string&, BoutReal, CELL_LOC) [with T = Field3D; std::string = std::__cxx11::basic_string; BoutReal = double]’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx:131:18: required from here 131 | return getField(m, var, name, def, location); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/gridfromfile.cxx:211:7: warning: variable ‘total_grid_yguards’ set but not used [-Wunused-but-set-variable=] 211 | int total_grid_yguards = 2 * grid_yguards; | ^~~~~~~~~~~~~~~~~~ [70/151] /usr/bin/g++ -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 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-I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -c 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/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/expressionparser.cxx: In member function ‘virtual double FieldGenerator::generate(const bout::generator::Context&)’: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/expressionparser.cxx:43:18: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations] 43 | return generate(ctx.x(), ctx.y(), ctx.z(), ctx.t()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/expressionparser.cxx:25: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/expressionparser.hxx:69:3: note: declared here 69 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) { | ^~~~~~~~ [123/151] /usr/bin/g++ -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer 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CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/rkgeneric.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/rkscheme.cxx.o CMakeFiles/bout++.dir/src/solver/impls/slepc/slepc.cxx.o CMakeFiles/bout++.dir/src/solver/impls/snes/snes.cxx.o CMakeFiles/bout++.dir/src/solver/impls/split-rk/split-rk.cxx.o CMakeFiles/bout++.dir/src/solver/solver.cxx.o CMakeFiles/bout++.dir/src/sys/adios_object.cxx.o CMakeFiles/bout++.dir/src/sys/bout_types.cxx.o CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o CMakeFiles/bout++.dir/src/sys/derivs.cxx.o CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o CMakeFiles/bout++.dir/src/sys/options.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_io.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_adios.cxx.o CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o CMakeFiles/bout++.dir/src/sys/output.cxx.o CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o CMakeFiles/bout++.dir/src/sys/range.cxx.o CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o CMakeFiles/bout++.dir/src/sys/timer.cxx.o CMakeFiles/bout++.dir/src/sys/type_name.cxx.o CMakeFiles/bout++.dir/src/sys/utils.cxx.o CMakeFiles/bout++.dir/bout++-time.cxx.o -Wl,-rpath,/usr/lib64/mpich/lib:/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/lib: /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/libfmt.so.11.2.0 lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl -ldl /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so lib/libpvode.so.1.0.0 /usr/lib64/libnetcdf.so /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.6.0 /usr/lib64/mpich/lib/libsundials_cvode.so.7.6.0 /usr/lib64/mpich/lib/libsundials_ida.so.7.6.0 /usr/lib64/mpich/lib/libsundials_arkode.so.6.6.0 /usr/lib64/mpich/lib/libsundials_core.so.7.6.0 /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [140/151] /usr/bin/cmake -E cmake_symlink_library lib/libbout++.so.5.2.0 lib/libbout++.so.5.2.0 lib/libbout++.so && : [141/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.14 generate.py helper.cxx.jinja /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/helper.cxx [142/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.14 generate.py boutcpp.pxd.jinja /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/boutcpp.pxd [143/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.14 generate.py helper.h.jinja /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/helper.h [144/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.14 generate.py boutpp.pyx.jinja /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/boutpp.pyx [145/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.14 generate.py resolve_enum.pxd.jinja /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/resolve_enum.pxd [146/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy boutpp.pyx libboutpp.pyx && /usr/bin/python3.14 -m cython libboutpp.pyx --cplus -3 -X binding=True -X embedsignature=True warning: resolve_enum.pxd:49:21: 'deflt' redeclared warning: resolve_enum.pxd:189:24: 'Standard' redeclared warning: resolve_enum.pxd:223:15: 'Standard' redeclared performance hint: libboutpp.pyx:2149:0: Exception check on 'callback' will always require the GIL to be acquired. Possible solutions: 1. Declare 'callback' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'callback' to allow an error code to be returned. [147/151] /usr/bin/g++ -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_314_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build -I/usr/include/python3.14 -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/boutexception_helper.cxx.o -MF tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/boutexception_helper.cxx.o.d -o tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/boutexception_helper.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/boutexception_helper.cxx In file included from /usr/include/python3.14/pyconfig.h:6, from /usr/include/python3.14/Python.h:14, from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/boutexception_helper.cxx:2: /usr/include/python3.14/pyconfig-64.h:2007:9: warning: ‘_POSIX_C_SOURCE’ redefined 2007 | #define _POSIX_C_SOURCE 200809L | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/16/x86_64-redhat-linux/bits/c++config.h:2677, from /usr/include/c++/16/bits/version.h:51, from /usr/include/c++/16/compare:40, from /usr/include/c++/16/array:40, from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boutexception.hxx:6, from /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/boutexception_helper.cxx:1: /usr/include/features.h:319:10: note: this is the location of the previous definition 319 | # define _POSIX_C_SOURCE 202405L | ^~~~~~~~~~~~~~~ /usr/include/python3.14/pyconfig-64.h:2043:9: warning: ‘_XOPEN_SOURCE’ redefined 2043 | #define _XOPEN_SOURCE 700 | ^~~~~~~~~~~~~ /usr/include/features.h:234:10: note: this is the location of the previous definition 234 | # define _XOPEN_SOURCE 800 | ^~~~~~~~~~~~~ [148/151] /usr/bin/g++ -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_314_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build -I/usr/include/python3.14 -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/helper.cxx.o -MF tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/helper.cxx.o.d -o tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/helper.cxx.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/helper.cxx [149/151] /usr/bin/g++ -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_314_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build -I/usr/include/python3.14 -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/include -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64 -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/libboutpp.cpp.o -MF tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/libboutpp.cpp.o.d -o tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/libboutpp.cpp.o -c /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/libboutpp.cpp /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:37696:46: warning: ‘__pyx_obj_9libboutpp_Vector2D* __pyx_f_9libboutpp_v2dFromObj(Vector2D)’ defined but not used [-Wunused-function] 37696 | static struct __pyx_obj_9libboutpp_Vector2D *__pyx_f_9libboutpp_v2dFromObj(Vector2D __pyx_v_i) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [150/151] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,--dependency-file=tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/link.d -Wl,-soname,libboutpp.cpython-314-x86_64-linux-gnu.so -o tools/pylib/_boutpp_build/libboutpp.cpython-314-x86_64-linux-gnu.so tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/libboutpp.cpp.o tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/helper.cxx.o tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-314-x86_64-linux-gnu.dir/boutexception_helper.cxx.o -Wl,-rpath,/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/lib:/usr/lib64/mpich/lib: lib/libbout++.so.5.2.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.11.2.0 lib/libpvpre.so.1.0.0 lib/libpvode.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.7.6.0 /usr/lib64/mpich/lib/libsundials_cvode.so.7.6.0 /usr/lib64/mpich/lib/libsundials_ida.so.7.6.0 /usr/lib64/mpich/lib/libsundials_arkode.so.6.6.0 /usr/lib64/mpich/lib/libsundials_core.so.7.6.0 /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl && : [151/151] cd /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/libboutpp.cpython-314-x86_64-linux-gnu.so /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so && /usr/bin/cmake -E copy /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_mpich/tools/pylib/_boutpp_build/../boutpp/__init__.py + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=$' \t\n' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/mpich/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode=$'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=$' \t\n' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval $'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64 + eval $'unset LD_LIBRARY_PATH;\nunset MPI_COMPILER;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset MPI_MAN;\nunset MPI_PYTHON_SITEARCH;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_FORTRAN_MOD_DIR;\nunset MPI_HOME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SYSCONFIG;\nunset MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_PYTHON2_SITEARCH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 ~/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual ~/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 + pushd manual + make sphinx-build=sphinx-build cd doxygen && doxygen Doxyfile warning: Tag 'TCL_SUBST' at line 247 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1056 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 1192 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1473 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1761 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 1777 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 1843 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 1941 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 2159 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 2172 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 2181 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 2223 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 2230 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 2449 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! Doxygen version used: 1.16.1 Notice: Output directory 'bout' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for images... Searching for dot files... 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Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_region.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_standard.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_standard.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/bout.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/bout.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/bout_enum_class.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/bout_enum_class.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/bout_types.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/bout_types.hxx... 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Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/constants.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/coordinates.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/coordinates.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/coordinates_accessor.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/coordinates_accessor.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/cyclic_reduction.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/cyclic_reduction.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/dcomplex.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/dcomplex.hxx... 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Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert/laplacexy.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert/laplacexy2.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert/laplacexy2.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert/laplacexy2_hypre.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert/laplacexy2_hypre.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert/laplacexz.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert/laplacexz.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert_laplace.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert_laplace.hxx... 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Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/spt/spt.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/invert_laplace.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/invert_laplace.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplacexy/laplacexy.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplacexy/laplacexy.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplacexy2/laplacexy2.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplacexy2/laplacexy2.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplacexy2/laplacexy2_hypre.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplacexy2/laplacexy2_hypre.cxx... 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Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplacexz/impls/petsc/laplacexz-petsc.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplacexz/laplacexz.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplacexz/laplacexz.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/parderiv/impls/cyclic/cyclic.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/parderiv/impls/cyclic/cyclic.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/parderiv/impls/cyclic/cyclic.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/parderiv/impls/cyclic/cyclic.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/parderiv/invert_parderiv.cxx... 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Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/interpolation_xz.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/invert3x3.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/invert3x3.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/mesh.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/mesh.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/parallel/fci.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/parallel/fci.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/parallel/fci.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/parallel/fci.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/parallel/identity.cxx... 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Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/ida/ida.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/ida/ida.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/imex-bdf2/imex-bdf2.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/imex-bdf2/imex-bdf2.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/imex-bdf2/imex-bdf2.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/imex-bdf2/imex-bdf2.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/petsc/petsc.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/petsc/petsc.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/petsc/petsc.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/petsc/petsc.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/power/power.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/power/power.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/power/power.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/power/power.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/pvode/pvode.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/pvode/pvode.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/pvode/pvode.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/pvode/pvode.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rk3-ssp/rk3-ssp.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rk3-ssp/rk3-ssp.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rk3-ssp/rk3-ssp.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rk3-ssp/rk3-ssp.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rk4/rk4.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rk4/rk4.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rk4/rk4.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rk4/rk4.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/rkgeneric.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/rkgeneric.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/rkgeneric.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/rkgeneric.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/rkscheme.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/rkscheme.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/slepc/slepc.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/slepc/slepc.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/slepc/slepc.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/slepc/slepc.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/snes/snes.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/snes/snes.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/snes/snes.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/snes/snes.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/split-rk/split-rk.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/split-rk/split-rk.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/split-rk/split-rk.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/split-rk/split-rk.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/solver.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/solver.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/adios_object.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/adios_object.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/bout_types.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/bout_types.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/boutcomm.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/boutcomm.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/boutexception.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/boutexception.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/derivs.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/derivs.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/expressionparser.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/expressionparser.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/generator_context.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/generator_context.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/hyprelib.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/hyprelib.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/msg_stack.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/msg_stack.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/options.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/options.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/options/optionparser.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/options/optionparser.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/options/options_adios.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/options/options_adios.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/options/options_adios.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/options/options_adios.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/options/options_ini.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/options/options_ini.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/options/options_ini.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/options/options_ini.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/options/options_io.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/options/options_io.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/options/options_netcdf.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/options/options_netcdf.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/options/options_netcdf.hxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/options/options_netcdf.hxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/optionsreader.cxx... Parsing file /builddir/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/options.hxx:1054: warning: Incomplete input: scope for class fmt::formatter< Options > not found! /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/output_bout_types.hxx:14: warning: Incomplete input: scope for class fmt::formatter< SpecificInd< N > > not found! /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_factory.cxx:85: warning: no uniquely matching class member found for BoundaryOpBase * BoundaryFactory::create(const string &name, BoundaryRegionBase *region) Possible candidates: 'BoundaryOpBase * BoundaryFactory::create(const std::string &name, BoundaryRegionBase *region)' at line 73 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_factory.hxx 'BoundaryOpBase * BoundaryFactory::create(const char *name, BoundaryRegionBase *region)' at line 74 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_factory.hxx 'ReturnType Factory< BaseType, DerivedFactory, BaseArgs >::create(Options *options=nullptr) const' at line 148 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/generic_factory.hxx 'ReturnType Factory< BaseType, DerivedFactory, BaseArgs >::create(const std::string &name) const' at line 154 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/generic_factory.hxx 'template < Args > ReturnType Factory< BaseType, DerivedFactory, BaseArgs >::create(const std::string &name, Args &&... args) const' at line 163 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/generic_factory.hxx 'template < Args > ReturnType Factory< BaseType, DerivedFactory, BaseArgs >::create(Options *options, Args &&... args) const' at line 194 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/generic_factory.hxx 'ReturnType XZInterpolationFactory::create(Options *options=nullptr, Mesh *mesh=nullptr) const' at line 276 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/interpolation_xz.hxx 'ReturnType XZInterpolationFactory::create(const std::string &type, Options *options) const' at line 279 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/interpolation_xz.hxx 'ReturnType ZInterpolationFactory::create(Options *options, int y_offset=0, Mesh *mesh=nullptr, Region< Ind3D > region_in={}) const' at line 77 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/interpolation_z.hxx 'ReturnType ZInterpolationFactory::create(int y_offset=0, Mesh *mesh=nullptr, Region< Ind3D > region_in={}) const' at line 81 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/interpolation_z.hxx 'ReturnType ZInterpolationFactory::create(const std::string &type, Options *options) const' at line 85 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/interpolation_z.hxx 'ReturnType LaplaceXZFactory::create(Mesh *mesh=nullptr, Options *options=nullptr, CELL_LOC loc=CELL_CENTRE) const' at line 50 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert/laplacexz.hxx 'ReturnType LaplaceXZFactory::create(const std::string &type, Options *options) const' at line 54 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert/laplacexz.hxx 'static std::unique_ptr< LaplaceXZ > LaplaceXZ::create(Mesh *m=nullptr, Options *opt=nullptr, CELL_LOC loc=CELL_CENTRE)' at line 78 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert/laplacexz.hxx 'ReturnType LaplaceFactory::create(Options *options=nullptr, CELL_LOC loc=CELL_CENTRE, Mesh *mesh=nullptr, Solver *solver=nullptr)' at line 143 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert_laplace.hxx 'ReturnType LaplaceFactory::create(const std::string &type, Options *options) const' at line 148 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert_laplace.hxx 'static std::unique_ptr< Laplacian > Laplacian::create(Options *opts=nullptr, const CELL_LOC location=CELL_CENTRE, Mesh *mesh_in=nullptr, Solver *solver=nullptr)' at line 268 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert_laplace.hxx 'ReturnType InvertParFactory::create(Options *options=nullptr, CELL_LOC location=CELL_CENTRE, Mesh *mesh=nullptr) const' at line 53 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert_parderiv.hxx 'ReturnType InvertParFactory::create(const std::string &type, Options *options) const' at line 57 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert_parderiv.hxx 'static std::unique_ptr< InvertPar > InvertPar::create(Options *opt_in=nullptr, CELL_LOC location_in=CELL_CENTRE, Mesh *mesh_in=nullptr)' at line 99 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert_parderiv.hxx 'ReturnType InvertParDivFactory::create(Options *options=nullptr, CELL_LOC location=CELL_CENTRE, Mesh *mesh=nullptr) const' at line 53 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert_pardiv.hxx 'ReturnType InvertParDivFactory::create(const std::string &type, Options *options) const' at line 57 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert_pardiv.hxx 'static std::unique_ptr< InvertParDiv > InvertParDiv::create(Options *opt_in=nullptr, CELL_LOC location_in=CELL_CENTRE, Mesh *mesh_in=nullptr)' at line 99 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert_pardiv.hxx 'ReturnType MeshFactory::create(const std::string &type, Options *options=nullptr, GridDataSource *source=nullptr) const' at line 80 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/mesh.hxx 'ReturnType MeshFactory::create(Options *options=nullptr, GridDataSource *source=nullptr) const' at line 82 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/mesh.hxx 'static Mesh * Mesh::create(GridDataSource *source, Options *opt=nullptr)' at line 112 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/mesh.hxx 'static Mesh * Mesh::create(Options *opt=nullptr)' at line 122 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/mesh.hxx 'static std::unique_ptr< OptionsIO > bout::OptionsIO::create(const std::string &file)' at line 78 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/options_io.hxx 'static std::unique_ptr< OptionsIO > bout::OptionsIO::create(Options &config)' at line 85 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/options_io.hxx 'static std::unique_ptr< OptionsIO > bout::OptionsIO::create(Options::InitializerList config_list)' at line 100 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/options_io.hxx 'static std::unique_ptr< Solver > Solver::create(Options *opts=nullptr)' at line 329 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/solver.hxx 'static std::unique_ptr< Solver > Solver::create(const SolverType &type, Options *opts=nullptr)' at line 332 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/solver.hxx /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_factory.cxx:221: warning: no matching class member found for BoundaryOpBase * BoundaryFactory::createFromOptions(const string &varname, BoundaryRegionBase *region) Possible candidates: 'BoundaryOpBase * BoundaryFactory::createFromOptions(const std::string &varname, BoundaryRegionBase *region)' at line 77 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_factory.hxx 'BoundaryOpBase * BoundaryFactory::createFromOptions(const char *varname, BoundaryRegionBase *region)' at line 79 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_factory.hxx /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_factory.cxx:335: warning: no uniquely matching class member found for void BoundaryFactory::add(BoundaryOp *bop, const string &name) Possible candidates: 'void BoundaryFactory::add(BoundaryOp *bop, const std::string &name)' at line 85 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOp *bop, const char *name)' at line 92 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const std::string &name)' at line 105 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const char *name)' at line 106 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_factory.hxx 'void FieldGroup::add(const FieldGroup &other)' at line 70 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/fieldgroup.hxx 'void FieldGroup::add(FieldData &f)' at line 86 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/fieldgroup.hxx 'void FieldGroup::add(Field3D &f)' at line 93 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/fieldgroup.hxx 'void FieldGroup::add(Vector2D &v)' at line 103 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/fieldgroup.hxx 'void FieldGroup::add(Vector3D &v)' at line 114 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(FieldData &t, Ts &... ts)' at line 129 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Field3D &t, Ts &... ts)' at line 135 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Vector3D &t, Ts &... ts)' at line 141 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Vector2D &t, Ts &... ts)' at line 147 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/fieldgroup.hxx 'virtual bool Factory< BaseType, DerivedFactory, BaseArgs >::add(const std::string &name, TypeCreator creator)' at line 106 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/generic_factory.hxx 'void multioutbuf< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 19 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/multiostream.hxx 'void multiostream< char >::add(std::basic_ostream< char, std::char_traits< char > > &str)' at line 80 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/multiostream.hxx 'void multiostream< wchar_t >::add(std::basic_ostream< wchar_t, std::char_traits< wchar_t > > &str)' at line 80 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/multiostream.hxx 'void multiostream< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 80 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/multiostream.hxx 'OperatorStencil< T > & OperatorStencil< T >::add(stencil_test test, stencil_part stencil)' at line 150 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/operatorstencil.hxx 'void Output::add(std::basic_ostream< char, _Tr > &str)' at line 113 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/output.hxx 'template < T > void bout::DataFileFacade::add(T &value, const std::string &name, bool save_repeat=false)' at line 81 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/physicsmodel.hxx 'void bout::DataFileFacade::add(ValueType value, const std::string &name, bool save_repeat=false)' at line 87 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/physicsmodel.hxx 'void bout::DataFileFacade::add(Vector2D *value, const std::string &name, bool save_repeat=false)' at line 88 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/physicsmodel.hxx 'void bout::DataFileFacade::add(Vector3D *value, const std::string &name, bool save_repeat=false)' at line 89 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/physicsmodel.hxx 'virtual void Solver::add(Field2D &v, const std::string &name, const std::string &description="")' at line 252 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/solver.hxx 'virtual void Solver::add(Field3D &v, const std::string &name, const std::string &description="")' at line 254 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/solver.hxx 'virtual void Solver::add(Vector2D &v, const std::string &name, const std::string &description="")' at line 256 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/solver.hxx 'virtual void Solver::add(Vector3D &v, const std::string &name, const std::string &description="")' at line 258 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/solver.hxx 'void SlepcSolver::add(Field2D &v, const std::string &name, const std::string &description="") override' at line 100 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Field3D &v, const std::string &name, const std::string &description="") override' at line 107 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Vector2D &v, const std::string &name, const std::string &description="") override' at line 114 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Vector3D &v, const std::string &name, const std::string &description="") override' at line 121 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/slepc/slepc.hxx /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_factory.cxx:346: warning: no uniquely matching class member found for void BoundaryFactory::add(BoundaryOpPar *bop, const string &name) Possible candidates: 'void BoundaryFactory::add(BoundaryOp *bop, const std::string &name)' at line 85 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOp *bop, const char *name)' at line 92 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const std::string &name)' at line 105 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const char *name)' at line 106 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_factory.hxx 'void FieldGroup::add(const FieldGroup &other)' at line 70 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/fieldgroup.hxx 'void FieldGroup::add(FieldData &f)' at line 86 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/fieldgroup.hxx 'void FieldGroup::add(Field3D &f)' at line 93 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/fieldgroup.hxx 'void FieldGroup::add(Vector2D &v)' at line 103 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/fieldgroup.hxx 'void FieldGroup::add(Vector3D &v)' at line 114 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(FieldData &t, Ts &... ts)' at line 129 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Field3D &t, Ts &... ts)' at line 135 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Vector3D &t, Ts &... ts)' at line 141 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Vector2D &t, Ts &... ts)' at line 147 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/fieldgroup.hxx 'virtual bool Factory< BaseType, DerivedFactory, BaseArgs >::add(const std::string &name, TypeCreator creator)' at line 106 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/generic_factory.hxx 'void multioutbuf< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 19 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/multiostream.hxx 'void multiostream< char >::add(std::basic_ostream< char, std::char_traits< char > > &str)' at line 80 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/multiostream.hxx 'void multiostream< wchar_t >::add(std::basic_ostream< wchar_t, std::char_traits< wchar_t > > &str)' at line 80 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/multiostream.hxx 'void multiostream< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 80 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/multiostream.hxx 'OperatorStencil< T > & OperatorStencil< T >::add(stencil_test test, stencil_part stencil)' at line 150 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/operatorstencil.hxx 'void Output::add(std::basic_ostream< char, _Tr > &str)' at line 113 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/output.hxx 'template < T > void bout::DataFileFacade::add(T &value, const std::string &name, bool save_repeat=false)' at line 81 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/physicsmodel.hxx 'void bout::DataFileFacade::add(ValueType value, const std::string &name, bool save_repeat=false)' at line 87 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/physicsmodel.hxx 'void bout::DataFileFacade::add(Vector2D *value, const std::string &name, bool save_repeat=false)' at line 88 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/physicsmodel.hxx 'void bout::DataFileFacade::add(Vector3D *value, const std::string &name, bool save_repeat=false)' at line 89 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/physicsmodel.hxx 'virtual void Solver::add(Field2D &v, const std::string &name, const std::string &description="")' at line 252 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/solver.hxx 'virtual void Solver::add(Field3D &v, const std::string &name, const std::string &description="")' at line 254 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/solver.hxx 'virtual void Solver::add(Vector2D &v, const std::string &name, const std::string &description="")' at line 256 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/solver.hxx 'virtual void Solver::add(Vector3D &v, const std::string &name, const std::string &description="")' at line 258 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/solver.hxx 'void SlepcSolver::add(Field2D &v, const std::string &name, const std::string &description="") override' at line 100 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Field3D &v, const std::string &name, const std::string &description="") override' at line 107 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Vector2D &v, const std::string &name, const std::string &description="") override' at line 114 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Vector3D &v, const std::string &name, const std::string &description="") override' at line 121 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/slepc/slepc.hxx /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/boundary_factory.cxx:359: warning: no matching class member found for void BoundaryFactory::addMod(BoundaryModifier *bmod, const string &name) Possible candidates: 'void BoundaryFactory::addMod(BoundaryModifier *bmod, const std::string &name)' at line 97 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_factory.hxx 'void BoundaryFactory::addMod(BoundaryModifier *bmod, const char *name)' at line 102 of file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_factory.hxx /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/pcr_thomas/pcr_thomas.cxx:979: warning: Found unknown command '@detail' /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/pcr_thomas/pcr_thomas.cxx:1008: warning: Found unknown command '@detail' sh: line 1: latex: command not found error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log! sh: line 1: latex: command not found error: Problems running latex. Check your installation or look for typos in _formulas_dark.tex and check _formulas_dark.log! /build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/optionsreader.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/output.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/output.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/petsclib.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/petsclib.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/range.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/range.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/slepclib.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/slepclib.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/timer.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/timer.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/type_name.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/type_name.cxx... Preprocessing /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/utils.cxx... Parsing file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/utils.cxx... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Warn for undocumented namespaces... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Building requirements list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Adding requirements... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating images for formulas in HTML... Generating example documentation... Generating file sources... Generating file documentation... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/adios_object.hxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/array.hxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/assert.hxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_factory.hxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_op.hxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/B/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/bout_enum_class.hxx:67: warning: Unsupported xml/html tag found /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/difops.hxx:175: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/difops.hxx:151: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/gyro_average.hxx:95: warning: argument 'in' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags=GYRO_FLAGS, int outer_boundary_flags=GYRO_FLAGS) /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/gyro_average.hxx:95: warning: The following parameter of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags=GYRO_FLAGS, int outer_boundary_flags=GYRO_FLAGS) is not documented: parameter 'rho' OUT++-v5.2.0/include/bout/boundary_region.hxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boundary_standard.hxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/bout.hxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/bout_enum_class.hxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/bout_types.hxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boutcomm.hxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/boutexception.hxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/build_config.hxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/caliper_wrapper.hxx... 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Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/fv_ops.hxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/generic_factory.hxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/globalfield.hxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/globalindexer.hxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/globals.hxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/griddata.hxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/gyro_average.hxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/hypre_interface.hxx... 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Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/options/options_io.cxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/options/options_netcdf.cxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/options/options_netcdf.hxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/optionsreader.cxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/output.cxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/petsclib.cxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/range.cxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/slepclib.cxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/timer.cxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/type_name.cxx... Generating docs for file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/utils.cxx... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound AdamsBashforthSolver... Generating docs for compound Add... Generating docs for compound ArkodeSolver... Generating docs for compound Array< T, Backing >... Generating docs for compound ArrayData< T >... Generating docs for compound asExpr< T >... Generating docs for compound asExpr< double >... Generating docs for compound asExpr< Field3D >... Generating docs for compound asExpr< float >... Generating docs for compound asExpr< int >... Generating docs for compound BinaryExpr< ExprT1, ExprT2, BinOp >... Generating docs for compound BinaryResult< ExprT1, ExprT2, name >... Generating docs for compound BoundaryConstGradient... Generating docs for compound BoundaryConstLaplace... Generating docs for compound BoundaryDirichlet... Generating docs for compound BoundaryDirichlet_2ndOrder... Generating docs for compound BoundaryDirichlet_4thOrder... Generating docs for compound BoundaryDirichlet_O3... Generating docs for compound BoundaryDirichlet_O4... Generating docs for compound BoundaryDivCurl... Generating docs for compound BoundaryFactory... Generating docs for compound BoundaryFree... Generating docs for compound BoundaryFree_O2... Generating docs for compound BoundaryFree_O3... Generating docs for compound BoundaryFromFieldAligned... Generating docs for compound BoundaryModifier... Gen/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/generic_factory.hxx:158: warning: The following parameter of Factory::create(const std::string &name, Args &&... args) const is not documented: parameter 'args' /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/generic_factory.hxx:189: warning: The following parameter of Factory::create(Options *options, Args &&... args) const is not documented: parameter 'args' erating docs for compound BoundaryNeumann... Generating docs for compound BoundaryNeumann2... Generating docs for compound BoundaryNeumann_2ndOrder... Generating docs for compound BoundaryNeumann_4thOrder... Generating docs for compound BoundaryNeumann_NonOrthogonal... Generating docs for compound BoundaryNeumann_O4... Generating docs for compound BoundaryNeumannPar... Generating docs for compound BoundaryOp... Generating docs for compound BoundaryOpBase... Generating docs for compound BoundaryOpPar... Generating docs for compound BoundaryOpPar_dirichlet_o1... Generating docs for compound BoundaryOpPar_dirichlet_o2... Generating docs for compound BoundaryOpPar_dirichlet_o3... Generating docs for compound BoundaryOpPar_neumann_o1... Generating docs for compound BoundaryOpPar_neumann_o2... Generating docs for compound BoundaryOpPar_neumann_o3... Generating docs for compound BoundaryOpParTemp< T, isNeumann >... Generating docs for compound BoundaryRegion... Generating docs for compound BoundaryRegionBase... Generating docs for compound BoundaryRegionPar... Generating docs for nested compound BoundaryRegionPar::RealPoint... Generating docs for nested compound BoundaryRegionPar::Indices... Generating docs for compound BoundaryRegionXIn... Generating docs for compound BoundaryRegionXOut... Generating docs for compound BoundaryRegionYDown... Generating docs for compound BoundaryRegionYUp... Generating docs for compound BoundaryRelax... Generating docs for compound BoundaryRobin... Generating docs for compound BoundaryToFieldAligned... Generating docs for compound BoundaryWidth... Generating docs for compound BoundaryZeroLaplace... Generating docs for compound BoundaryZeroLaplace2... Generating docs for compound BoutComm... Generating docs for compound BoutException... Generating docs for compound BoutIterationFail... Generating docs for compound BoutMask... Generating docs for compound BoutMesh... Generating docs for nested compound BoutMesh::YDecompositionIndices... Generating docs for nested compound BoutMesh::XDecompositionIndices... Generating docs for nested compound BoutMesh::ConnectionInfo... Generating docs for nested compound BoutMesh::CommHandle... Generating docs for compound BoutMonitor... Generating docs for compound BoutRealArray... Generating docs for compound BoutRhsFail... Generating docs for compound CASHKARPScheme... Generating docs for compound ColoringStencil... Generating docs for compound ConditionalOutput... Generating docs for compound Context... Generating docs for compound Coordinates... Generating docs for compound CoordinatesAccessor... Generating docs for compound CvodeSolver... Generating docs for compound CyclicReduce< T >... Generating docs for compound D2DX2_C2... Generating docs for compound D2DX2_C2_stag... Generating docs for compound D2DX2_C4... Generating docs for compound D4DX4_C2... Generating docs for compound DDX_C2... Generating docs for compound DDX_C2_stag... Generating docs for compound DDX_C4... Generating docs for compound DDX_C4_stag... Generating docs for compound DDX_CWENO2... Generating docs for compound DDX_CWENO3... Generating docs for compound DDX_S2... Generating docs for compound DeferredFunction< currentFunction, currentType >... Generating docs for compound DerivativeStore< FieldType >... Generating docs for compound DerivativeType< FF >... Generating docs for compound DirectionTypes... Generating docs for compound Divide... Generating docs for compound DummyOutput... Generating docs for compound enumWrapper< T, val >... Generating docs for compound EulerSolver... Generating docs for compound ExpressionParser... Generating docs for nested compound ExpressionParser::FuzzyMatch... Generating docs for nested compound ExpressionParser::LexInfo... Generating docs for compound exprTraits< ExprT >... Generating docs for compound exprTraits< double >... Generating docs for compound exprTraits< float >... Generating docs for compound exprTraits< int >... Generating docs for compound Factory< BaseType, DerivedFactory, BaseArgs >... Generating docs for nested compound Factory< Ba/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/field2d.hxx:58: warning: The following parameters of Field2D::Field2D(Mesh *localmesh=nullptr, CELL_LOC location_in=CELL_CENTRE, DirectionTypes directions_in={YDirectionType::Standard, ZDirectionType::Average}) are not documented: parameter 'location_in' parameter 'directions_in' /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/field/fieldgenerators.hxx:198: warning: Unsupported xml/html tag found /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/griddata.hxx:210: warning: The following parameter of GridFromOptions::get(Mesh *mesh, BoutReal &rval, const std::string &name, BoutReal def=0.0) is not documented: parameter 'def' /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/griddata.hxx:184: warning: The following parameter of GridFromOptions::get(Mesh *mesh, std::string &sval, const std::string &name, const std::string &def="") is not documented: parameter 'def' /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/petsc/petsc_laplace.cxx:936: warning: argument coef1 from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/petsc/petsc_laplace.cxx:936: warning: argument coef2 from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/petsc/petsc_laplace.cxx:936: warning: argument coef3 from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/petsc/petsc_laplace.cxx:936: warning: argument coef4 from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/petsc/petsc_laplace.cxx:936: warning: argument coef5 from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/petsc/petsc_laplace.cxx:874: warning: argument MatA from the argument list of LaplacePetsc::Element has multiple @param documentation sections /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert_laplace.hxx:264: warning: argument 'opt' of command @param is not found in the argument list of Laplacian::create(Options *opts=nullptr, const CELL_LOC location=CELL_CENTRE, Mesh *mesh_in=nullptr, Solver *solver=nullptr) /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert_laplace.hxx:264: warning: The following parameters of Laplacian::create(Options *opts=nullptr, const CELL_LOC location=CELL_CENTRE, Mesh *mesh_in=nullptr, Solver *solver=nullptr) are not documented: parameter 'opts' parameter 'location' parameter 'mesh_in' parameter 'solver' /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/invert_laplace.cxx:387: warning: argument 'global_flags' of command @param is not found in the argument list of Laplacian::tridagMatrix(dcomplex *avec, dcomplex *bvec, dcomplex *cvec, dcomplex *bk, int jy, int kz, BoutReal kwave, const Field2D *a, const Field2D *c1coef, const Field2D *c2coef, const Field2D *d, bool includeguards=true, bool zperiodic=true) /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/invert_laplace.cxx:387: warning: argument 'inner_boundary_flags' of command @param is not found in the argument list of Laplacian::tridagMatrix(dcomplex *avec, dcomplex *bvec, dcomplex *cvec, dcomplex *bk, int jy, int kz, BoutReal kwave, const Field2D *a, const Field2D *c1coef, const Field2D *c2coef, const Field2D *d, bool includeguards=true, bool zperiodic=true) /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/invert_laplace.cxx:387: warning: argument 'outer_boundary_flags' of command @param is not found in the argument list of Laplacian::tridagMatrix(dcomplex *avec, dcomplex *bvec, dcomplex *cvec, dcomplex *bk, int jy, int kz, BoutReal kwave, const Field2D *a, const Field2D *c1coef, const Field2D *c2coef, const Field2D *d, bool includeguards=true, bool zperiodic=true) /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/invert_laplace.cxx:387: warning: argument avec from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/invert_laplace.cxx:387: warning: argument bvec from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/invert_laplace.cxx:387: warning: argument cvec from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/mesh.hxx:173: warning: The following parameter of Mesh::get(Field2D &var, const std::string &name, BoutReal def=0.0, bool communicate=true, CELL_LOC location=CELL_DEFAULT) is not documented: parameter 'location' /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/mesh.hxx:185: warning: The following parameter of Mesh::get(Field3D &var, const std::string &name, BoutReal def=0.0, bool communicate=true, CELL_LOC location=CELL_DEFAULT) is not documented: parameter 'location' /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/mesh.hxx:196: warning: The following parameter of Mesh::get(FieldPerp &var, const std::string &name, BoutReal def=0.0, bool communicate=true, CELL_LOC location=CELL_DEFAULT) is not documented: parameter 'location' seType, DerivedFactory, BaseArgs >::RegisterInFactory< DerivedType >... Generating docs for nested compound Factory< BaseType, DerivedFactory, BaseArgs >::RegisterUnavailableInFactory... Generating docs for compound FCIMap... Generating docs for compound FCITransform... Generating docs for compound fcmplx... Generating docs for compound FDDX_C2... Generating docs for compound FDDX_C4... Generating docs for compound FDDX_U1... Generating docs for compound FDDX_U1_stag... Generating docs for compound FDDX_U2... Generating docs for compound FDDX_U2_stag... Generating docs for compound FFT2ndDerivativeType... Generating docs for compound FFTDerivativeType... Generating docs for compound Field... Generating docs for compound Field2D... Generating docs for compound Field2DExpr... Generating docs for compound Field3D... Generating docs for compound Field3DExpr... Generating docs for compound FieldAccessor< location, FieldType >... Generating docs for compound FieldATan... Generating docs for compound FieldBallooning... Generating docs for compound FieldBinary... Generating docs for compound FieldClamp... Generating docs for compound FieldData... Generating docs for compound FieldFactory... Generating docs for compound FieldFunction... Generating docs for compound FieldGaussian... Generating docs for compound FieldGenerator... Generating docs for compound FieldGenOneArg< Op >... Generating docs for compound FieldGenTwoArg< Op >... Generating docs for compound FieldGroup... Generating docs for compound FieldHeaviside... Generating docs for compound FieldMax... Generating docs for compound FieldMin... Generating docs for compound FieldMixmode... Generating docs for compound FieldNull... Generating docs for compound FieldPerp... Generating docs for compound FieldRound... Generating docs for compound FieldTanhHat... Generating docs for compound FieldValue... Generating docs for compound FieldValuePtr... Generating docs for compound FieldWhere... Generating docs for compound GlobalField... Generating docs for compound GlobalField2D... Generating docs for compound GlobalField3D... Generating docs for compound GlobalIndexer< T >... Generating docs for compound GridDataSource... Generating docs for compound GridFile... Generating docs for compound GridFromOptions... Generating docs for compound IdaSolver... Generating docs for compound IMEXBDF2... Generating docs for compound IndexOffset< T >... Generating docs for compound InvertPar... Generating docs for compound InvertParDiv... Generating docs for compound InvertParDivFactory... Generating docs for compound InvertParFactory... Generating docs for compound LaplaceFactory... Generating docs for compound LaplaceHypre3d... Generating docs for compound LaplaceNaulin... Generating docs for compound LaplacePCR... Generating docs for compound LaplacePCR_THOMAS... Generating docs for compound LaplacePetsc... Generating docs for compound LaplacePetsc3dAmg... Generating docs for compound LaplaceSerialTri... Generating docs for compound LaplaceSPT... Generating docs for nested compound LaplaceSPT::SPT_data... Generating docs for compound LaplaceXY... Generating docs for nested compound LaplaceXY::LaplaceXYMonitor... Generating docs for compound LaplaceXY2... Generating docs for compound LaplaceXY2Hypre... Generating docs for compound LaplaceXZ... Generating docs for compound LaplaceXZFactory... Generating docs for compound LaplaceXZpetsc... Generating docs for nested compound LaplaceXZpetsc::YSlice... Generating docs for compound Laplacian... Generating docs for nested compound Laplacian::LaplacianMonitor... Generating docs for compound Literal... Generating docs for compound LoadVarOp... Generating docs for compound LogicalNot... Generating docs for compound Matrix< T >... Generating docs for compound Mesh... Generating docs for compound MeshFactory... Generating docs for compound metaData... Generating docs for compound Monitor... Generating docs for compound MpiWrapper... Generating docs for compound MsgStack... Generating docs for compound MsgStackItem... Generating docs for compound multios/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/options.hxx:189: warning: argument 'parent' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/options.hxx:189: warning: argument 'sectionName' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/options.hxx:189: warning: The following parameters of Options::Options(Options *parent_instance, std::string full_name) are not documented: parameter 'parent_instance' parameter 'full_name' /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/optionsreader.hxx:65: warning: argument 'file' of command @param is not found in the argument list of OptionsReader::read(Options *options, const std::string &filename) /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/optionsreader.hxx:65: warning: The following parameter of OptionsReader::read(Options *options, const std::string &filename) is not documented: parameter 'filename' /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/optionsreader.hxx:77: warning: argument 'file' of command @param is not found in the argument list of OptionsReader::write(Options *options, const std::string &filename) /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/optionsreader.hxx:77: warning: The following parameter of OptionsReader::write(Options *options, const std::string &filename) is not documented: parameter 'filename' /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/physicsmodel.hxx:330: warning: The following parameter of PhysicsModel::bout_solve(Field2D &var, const char *name, const std::string &description="") is not documented: parameter 'description' /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/power/power.hxx:49: warning: argument 'outputfile' of command @param is not found in the argument list of PowerSolver::outputVars(Options &output_options, bool save_repeat=true) inherited from member outputVars at line 318 in file /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/solver.hxx /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/solver.hxx:318: warning: The following parameter of PowerSolver::outputVars(Options &output_options, bool save_repeat=true) is not documented: parameter 'output_options' /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/paralleltransform.hxx:282: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Tensor< dcomplex > &phs, const YDirectionType y_direction_out, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/solver.hxx:318: warning: argument 'outputfile' of command @param is not found in the argument list of Solver::outputVars(Options &output_options, bool save_repeat=true) /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/solver.hxx:318: warning: The following parameter of Solver::outputVars(Options &output_options, bool save_repeat=true) is not documented: parameter 'output_options' /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/surfaceiter.hxx:35: warning: The following parameter of SurfaceIter::SurfaceIter(Mesh *mesh, bool include_guards=false) is not documented: parameter 'include_guards' tream< char_type, traits >... Generating docs for compound multioutbuf< char_type, traits >... Generating docs for compound multioutbuf_init< char_type, traits >... Generating docs for compound Multiply... Generating docs for compound OperatorStencil< T >... Generating docs for nested compound OperatorStencil< T >::Stencil... Generating docs for compound OptionINI... Generating docs for compound OptionParser... Generating docs for compound Options... Generating docs for nested compound Options::CopyableOptions... Generating docs for nested compound Options::AttributeType... Generating docs for nested compound Options::FuzzyMatch... Generating docs for compound OptionsReader... Generating docs for compound Output... Generating docs for compound ParallelTransform... Generating docs for nested compound ParallelTransform::PositionsAndWeights... Generating docs for compound ParallelTransformIdentity... Generating docs for compound ParseException... Generating docs for compound PetscLib... Generating docs for compound PetscMatrix< T >... Generating docs for nested compound PetscMatrix< T >::MatrixDeleter... Generating docs for nested compound PetscMatrix< T >::Element... Generating docs for compound PetscSolver... Generating docs for compound PetscVector< T >... Generating docs for nested compound PetscVector< T >::VectorDeleter... Generating docs for compound PhysicsModel... Generating docs for nested compound PhysicsModel::PhysicsModelMonitor... Generating docs for compound Power... Generating docs for compound PowerSolver... Generating docs for compound produceCombinations< FirstSet, otherSets >... Generating docs for compound PromoteType< Lhs, Rhs >... Generating docs for compound PvodeSolver... Generating docs for compound RajaForAll... Generating docs for compound RangeIterator... Generating docs for compound Region< T >... Generating docs for compound RegionStats... Generating docs for compound registerMethod... Generating docs for compound RK3SSP... Generating docs for compound RK4SIMPLEScheme... Generating docs for compound RK4Solver... Generating docs for compound RKF34Scheme... Generating docs for compound RKF45Scheme... Generating docs for compound RKGenericSolver... Generating docs for compound RKScheme... Generating docs for compound RKSchemeFactory... Generating docs for compound RunMetrics... Generating docs for compound SaveDerivsOp... Generating docs for compound SaveVarOp... Generating docs for compound Set< Ts >... Generating docs for compound ShiftedMetric... Generating docs for nested compound ShiftedMetric::ParallelSlicePhase... Generating docs for compound ShiftedMetricInterp... Generating docs for compound SlepcLib... Generating docs for compound SlepcSolver... Generating docs for compound snes_info... Generating docs for compound SNESSolver... Generating docs for compound Solver... Generating docs for nested compound Solver::VarStr< T >... Generating docs for nested compound Solver::MonitorInfo... Generating docs for compound SolverFactory... Generating docs for compound SpecificInd< N >... Generating docs for compound SplitFluxDerivativeType... Generating docs for compound SplitRK... Generating docs for compound stencil... Generating docs for compound Subtract... Generating docs for compound SurfaceIter... Generating docs for compound Tensor< T >... Generating docs for compound Timer... Generating docs for nested compound Timer::timer_info... Generating docs for compound TypeContainer< T >... Generating docs for compound Uncopyable... Generating docs for compound VDDX_C2... Generating docs for compound VDDX_C2_stag... Generating docs for compound VDDX_C4... Generating docs for compound VDDX_C4_stag... Generating docs for compound VDDX_U1... Generating docs for compound VDDX_U1_stag... Generating docs for compound VDDX_U2... Generating docs for compound VDDX_U2_stag... Generating docs for compound VDDX_U3... Generating docs for compound VDDX_WENO3... Generating docs for compound Vector2D... Generating docs for compound Vector3D... Generating docs for compound WithQuietOutput... Generating docs for com/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/physics/snb.cxx:8: warning: explicit link request to 'include' could not be resolved /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/options_io.hxx:136: warning: Unsupported xml/html tag found /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/options_io.hxx:136: warning: Unsupported xml/html tag found /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/options_io.hxx:125: warning: Unsupported xml/html tag found /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/options_io.hxx:125: warning: Unsupported xml/html tag found /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/index_derivs_interface.hxx:276: warning: argument 'v' of command @param is not found in the argument list of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/index_derivs_interface.hxx:276: warning: The following parameter of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") is not documented: parameter 'vel' pound XZBilinear... Generating docs for compound XZHermiteSpline... Generating docs for compound XZInterpolation... Generating docs for compound XZInterpolationFactory... Generating docs for compound XZLagrange4pt... Generating docs for compound XZMonotonicHermiteSpline... Generating docs for compound ZHermiteSpline... Generating docs for compound ZInterpolation... Generating docs for compound ZInterpolationFactory... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating docs for namespace bout Generating docs for compound bout::HypreVector< T >... Generating docs for nested compound bout::HypreVector< T >::Element... Generating docs for compound bout::HypreMatrix< T >... Generating docs for nested compound bout::HypreMatrix< T >::MatrixDeleter... Generating docs for nested compound bout::HypreMatrix< T >::Element... Generating docs for compound bout::HypreSystem< T >... Generating docs for compound bout::HypreLib... Generating docs for compound bout::OptionsIO... Generating docs for compound bout::OptionsIOFactory... Generating docs for compound bout::DataFileFacade... Generating docs for nested compound bout::DataFileFacade::StoredValue... Generating docs for compound bout::OptionsConversionVisitor... Generating docs for compound bout::HeatFluxSNB... Generating docs for compound bout::CheckMeshResult... Generating docs for compound bout::OptionsNetCDF... Generating docs for namespace bout::build Generating docs for namespace bout::derivatives Generating docs for namespace bout::derivatives::index Generating docs for namespace bout::details Generating docs for compound bout::details::OptionsFormatterBase... Generating docs for namespace bout::experimental Generating docs for compound bout::experimental::CommandLineArgs... Generating docs for namespace bout::fft Generating docs for namespace bout::generator Generating docs for compound bout::generator::Context... Generating docs for namespace bout::globals Generating docs for namespace bout::inversion Generating docs for compound bout::inversion::InvertableOperator< T >... Generating docs for namespace bout::utils Generating docs for compound bout::utils::isVariantMember< T, VARIANT_T >... Generating docs for compound bout::utils::isVariantMember< T, variant< ALL_T... > >... Generating docs for compound bout::utils::_Unique_if< T >... Generating docs for compound bout::utils::_Unique_if< T[]>... Generating docs for compound bout::utils::_Unique_if< T[N]>... Generating docs for compound bout::utils::function_traits< T >... Generating docs for compound bout::utils::function_traits< R(*)(Args...)>... Generating docs for nested compound bout::utils::function_traits< R(*)(Args...)>::arg< i >... Generating docs for namespace bout::utils::details Generating docs for compound bout::utils::details::CompareTypes< T, U >... Generating docs for compound bout::utils::details::CompareTypes< T, T >... Generating docs for compound bout::utils::details::IsEqual< T >... Generating docs for compound bout::utils::details::disjunction<... >... Generating docs for compound bout::utils::details::disjunction< B1 >... Generating docs for compound bout::utils::details::disjunction< B1, Bn... >... Generating docs for compound bout::utils::details::StaticCastOrThrow< Target >... Generating docs for compound bout::utils::details::ToString... Generating docs for compound fmt::formatter< Options >... Generating docs for compound fmt::formatter< SpecificInd< N > >... Generating docs for namespace FV Generating docs for compound FV::Stencil1D... Generating docs for compound FV::Upwind... Generating docs for compound FV::Fromm... Generating docs for compound FV::MinMod... Generating docs for compound FV::MC... Generating docs for namespace gen_fieldops Generating docs for compound gen_fieldops.Field... Generating docs for namespace parallel_boundary_stencil Generating docs for namespace parallel_stencil Generating docs for namespace SI Generating docs for namespace std Generating docs for compound std::hash< uuids::uuid >... Generating docs for namespace stencils_sympy Generating docs for compound stencils_sympy.dirichlet... Generating docs for compound stencils_sympy.neumann... Generating docs for namespace sundials Generating docs for namespace uuids Generating docs for compound uuids::uuid... Generating docs for compound uuids::uuid_system_generator... Generating docs for compound uuids::basic_uuid_random_generator< UniformRandomNumberGenerator >... Generating docs for compound uuids::uuid_name_generator... Generating docs for compound uuids::uuid_time_generator... Generating docs for namespace uuids::detail Generating docs for compound uuids::detail::sha1... Generating graph info page... Generating directory documentation... Generating index page... Generating main page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class bout::utils::_Unique_if Generating XML output for class bout::utils::_Unique_if< T[]> Generating XML output for class bout::utils::_Unique_if< T[N]> Generating XML output for class AdamsBashforthSolver Generating XML output for class Add Generating XML output for class bout::utils::function_traits< R(*)(Args...)>::arg Generating XML output for class ArkodeSolver Generating XML output for class Array Generating XML output for class ArrayData Generating XML output for class asExpr Generating XML output for class asExpr< double > Generating XML output for class asExpr< Field3D > Generating XML output for class asExpr< float > Generating XML output for class asExpr< int > Generating XML output for class Options::AttributeType Generating XML output for class uuids::basic_uuid_random_generator Generating XML output for class BinaryExpr Generating XML output for class BinaryResult Generating XML output for class BoundaryConstGradient Generating XML output for class BoundaryConstLaplace Generating XML output for class BoundaryDirichlet Generating XML output for class BoundaryDirichlet_2ndOrder Generating XML output for class BoundaryDirichlet_4thOrder Generating XML output for class BoundaryDirichlet_O3 Generating XML output for class BoundaryDirichlet_O4 Generating XML output for class BoundaryDivCurl Generating XML output for class BoundaryFactory Generating XML output for class BoundaryFree Generating XML output for class BoundaryFree_O2 Generating XML output for class BoundaryFree_O3 Generating XML output for class BoundaryFromFieldAligned Generating XML output for class BoundaryModifier Generating XML output for class BoundaryNeumann Generating XML output for class BoundaryNeumann2 Generating XML output for class BoundaryNeumann_2ndOrder Generating XML output for class BoundaryNeumann_4thOrder Generating XML output for class BoundaryNeumann_NonOrthogonal Generating XML output for class BoundaryNeumann_O4 Generating XML output for class BoundaryNeumannPar Generating XML output for class BoundaryOp Generating XML output for class BoundaryOpBase Generating XML output for class BoundaryOpPar Generating XML output for class BoundaryOpPar_dirichlet_o1 Generating XML output for class BoundaryOpPar_dirichlet_o2 Generating XML output for class BoundaryOpPar_dirichlet_o3 Generating XML output for class BoundaryOpPar_neumann_o1 Generating XML output for class BoundaryOpPar_neumann_o2 Generating XML output for class BoundaryOpPar_neumann_o3 Generating XML output for class BoundaryOpParTemp Generating XML output for class BoundaryRegion Generating XML output for class BoundaryRegionBase Generating XML output for class BoundaryRegionPar Generating XML output for class BoundaryRegionXIn Generating XML output for class BoundaryRegionXOut Generating XML output for class BoundaryRegionYDown Generating XML output for class BoundaryRegionYUp Generating XML output for class BoundaryRelax Generating XML output for class BoundaryRobin Generating XML output for class BoundaryToFieldAligned Generating XML output for class BoundaryWidth Generating XML output for class BoundaryZeroLaplace Generating XML output for class BoundaryZeroLaplace2 Generating XML output for class BoutComm Generating XML output for class BoutException Generating XML output for class BoutIterationFail Generating XML output for class BoutMask Generating XML output for class BoutMesh Generating XML output for class BoutMonitor Generating XML output for class BoutRealArray Generating XML output for class BoutRhsFail Generating XML output for class CASHKARPScheme Generating XML output for class bout::CheckMeshResult Generating XML output for class ColoringStencil Generating XML output for class bout::experimental::CommandLineArgs Generating XML output for class BoutMesh::CommHandle Generating XML output for class bout::utils::details::CompareTypes Generating XML output for class bout::utils::details::CompareTypes< T, T > Generating XML output for class ConditionalOutput Generating XML output for class BoutMesh::ConnectionInfo Generating XML output for class bout::generator::Context Generating XML output for class Context Generating XML output for class Coordinates Generating XML output for class CoordinatesAccessor Generating XML output for class Options::CopyableOptions Generating XML output for class CvodeSolver Generating XML output for class CyclicReduce Generating XML output for class D2DX2_C2 Generating XML output for class D2DX2_C2_stag Generating XML output for class D2DX2_C4 Generating XML output for class D4DX4_C2 Generating XML output for class bout::DataFileFacade Generating XML output for class DDX_C2 Generating XML output for class DDX_C2_stag Generating XML output for class DDX_C4 Generating XML output for class DDX_C4_stag Generating XML output for class DDX_CWENO2 Generating XML output for class DDX_CWENO3 Generating XML output for class DDX_S2 Generating XML output for class DeferredFunction Generating XML output for class DerivativeStore Generating XML output for class DerivativeType Generating XML output for class DirectionTypes Generating XML output for class stencils_sympy::dirichlet Generating XML output for class bout::utils::details::disjunction Generating XML output for class bout::utils::details::disjunction< B1 > Generating XML output for class bout::utils::details::disjunction< B1, Bn... > Generating XML output for class Divide Generating XML output for class DummyOutput Generating XML output for class bout::HypreMatrix::Element Generating XML output for class bout::HypreVector::Element Generating XML output for class PetscMatrix::Element Generating XML output for class enumWrapper Generating XML output for class EulerSolver Generating XML output for class ExpressionParser Generating XML output for class exprTraits Generating XML output for class exprTraits< double > Generating XML output for class exprTraits< float > Generating XML output for class exprTraits< int > Generating XML output for class Factory Generating XML output for class FCIMap Generating XML output for class FCITransform Generating XML output for class fcmplx Generating XML output for class FDDX_C2 Generating XML output for class FDDX_C4 Generating XML output for class FDDX_U1 Generating XML output for class FDDX_U1_stag Generating XML output for class FDDX_U2 Generating XML output for class FDDX_U2_stag Generating XML output for class FFT2ndDerivativeType Generating XML output for class FFTDerivativeType Generating XML output for class Field Generating XML output for class gen_fieldops::Field Generating XML output for class Field2D Generating XML output for class Field2DExpr Generating XML output for class Field3D Generating XML output for class Field3DExpr Generating XML output for class FieldAccessor Generating XML output for class FieldATan Generating XML output for class FieldBallooning Generating XML output for class FieldBinary Generating XML output for class FieldClamp Generating XML output for class FieldData Generating XML output for class FieldFactory Generating XML output for class FieldFunction Generating XML output for class FieldGaussian Generating XML output for class FieldGenerator Generating XML output for class FieldGenOneArg Generating XML output for class FieldGenTwoArg Generating XML output for class FieldGroup Generating XML output for class FieldHeaviside Generating XML output for class FieldMax Generating XML output for class FieldMin Generating XML output for class FieldMixmode Generating XML output for class FieldNull Generating XML output for class FieldPerp Generating XML output for class FieldRound Generating XML output for class FieldTanhHat Generating XML output for class FieldValue Generating XML output for class FieldValuePtr Generating XML output for class FieldWhere Generating XML output for class fmt::formatter< Options > Generating XML output for class fmt::formatter< SpecificInd< N > > Generating XML output for class FV::Fromm Generating XML output for class bout::utils::function_traits Generating XML output for class bout::utils::function_traits< R(*)(Args...)> Generating XML output for class ExpressionParser::FuzzyMatch Generating XML output for class Options::FuzzyMatch Generating XML output for class GlobalField Generating XML output for class GlobalField2D Generating XML output for class GlobalField3D Generating XML output for class GlobalIndexer Generating XML output for class GridDataSource Generating XML output for class GridFile Generating XML output for class GridFromOptions Generating XML output for class std::hash< uuids::uuid > Generating XML output for class bout::HeatFluxSNB Generating XML output for class bout::HypreLib Generating XML output for class bout::HypreMatrix Generating XML output for class bout::HypreSystem Generating XML output for class bout::HypreVector Generating XML output for class IdaSolver Generating XML output for class IMEXBDF2 Generating XML output for class IndexOffset Generating XML output for class BoundaryRegionPar::Indices Generating XML output for class bout::inversion::InvertableOperator Generating XML output for class InvertPar Generating XML output for class InvertParDiv Generating XML output for class InvertParDivFactory Generating XML output for class InvertParFactory Generating XML output for class bout::utils::details::IsEqual Generating XML output for class bout::utils::isVariantMember Generating XML output for class bout::utils::isVariantMember< T, variant< ALL_T... > > Generating XML output for class LaplaceFactory Generating XML output for class LaplaceHypre3d Generating XML output for class LaplaceNaulin Generating XML output for class LaplacePCR Generating XML output for class LaplacePCR_THOMAS Generating XML output for class LaplacePetsc Generating XML output for class LaplacePetsc3dAmg Generating XML output for class LaplaceSerialTri Generating XML output for class LaplaceSPT Generating XML output for class LaplaceXY Generating XML output for class LaplaceXY2 Generating XML output for class LaplaceXY2Hypre Generating XML output for class LaplaceXY::LaplaceXYMonitor Generating XML output for class LaplaceXZ Generating XML output for class LaplaceXZFactory Generating XML output for class LaplaceXZpetsc Generating XML output for class Laplacian Generating XML output for class Laplacian::LaplacianMonitor Generating XML output for class ExpressionParser::LexInfo Generating XML output for class Literal Generating XML output for class LoadVarOp Generating XML output for class LogicalNot Generating XML output for class Matrix Generating XML output for class bout::HypreMatrix::MatrixDeleter Generating XML output for class PetscMatrix::MatrixDeleter Generating XML output for class FV::MC Generating XML output for class Mesh Generating XML output for class MeshFactory Generating XML output for class metaData Generating XML output for class FV::MinMod Generating XML output for class Monitor Generating XML output for class Solver::MonitorInfo Generating XML output for class MpiWrapper Generating XML output for class MsgStack Generating XML output for class MsgStackItem Generating XML output for class multiostream Generating XML output for class multioutbuf Generating XML output for class multioutbuf_init Generating XML output for class Multiply Generating XML output for class stencils_sympy::neumann Generating XML output for class OperatorStencil Generating XML output for class OptionINI Generating XML output for class OptionParser Generating XML output for class Options Generating XML output for class bout::OptionsConversionVisitor Generating XML output for class bout::details::OptionsFormatterBase Generating XML output for class bout::OptionsIO Generating XML output for class bout::OptionsIOFactory Generating XML output for class bout::OptionsNetCDF Generating XML output for class OptionsReader Generating XML output for class Output Generating XML output for class ShiftedMetric::ParallelSlicePhase Generating XML output for class ParallelTransform Generating XML output for class ParallelTransformIdentity Generating XML output for class ParseException Generating XML output for class PetscLib Generating XML output for class PetscMatrix Generating XML output for class PetscSolver Generating XML output for class PetscVector Generating XML output for class PhysicsModel Generating XML output for class PhysicsModel::PhysicsModelMonitor Generating XML output for class ParallelTransform::PositionsAndWeights Generating XML output for class Power Generating XML output for class PowerSolver Generating XML output for class produceCombinations Generating XML output for class PromoteType Generating XML output for class PvodeSolver Generating XML output for class RajaForAll Generating XML output for class RangeIterator Generating XML output for class BoundaryRegionPar::RealPoint Generating XML output for class Region Generating XML output for class RegionStats Generating XML output for class Factory::RegisterInFactory Generating XML output for class registerMethod Generating XML output for class Factory::RegisterUnavailableInFactory Generating XML output for class RK3SSP Generating XML output for class RK4SIMPLEScheme Generating XML output for class RK4Solver Generating XML output for class RKF34Scheme Generating XML output for class RKF45Scheme Generating XML output for class RKGenericSolver Generating XML output for class RKScheme Generating XML output for class RKSchemeFactory Generating XML output for class RunMetrics Generating XML output for class SaveDerivsOp Generating XML output for class SaveVarOp Generating XML output for class Set Generating XML output for class uuids::detail::sha1 Generating XML output for class ShiftedMetric Generating XML output for class ShiftedMetricInterp Generating XML output for class SlepcLib Generating XML output for class SlepcSolver Generating XML output for class snes_info Generating XML output for class SNESSolver Generating XML output for class Solver Generating XML output for class SolverFactory Generating XML output for class SpecificInd Generating XML output for class SplitFluxDerivativeType Generating XML output for class SplitRK Generating XML output for class LaplaceSPT::SPT_data Generating XML output for class bout::utils::details::StaticCastOrThrow Generating XML output for class OperatorStencil::Stencil Generating XML output for class stencil Generating XML output for class FV::Stencil1D Generating XML output for class bout::DataFileFacade::StoredValue Generating XML output for class Subtract Generating XML output for class SurfaceIter Generating XML output for class Tensor Generating XML output for class Timer Generating XML output for class Timer::timer_info Generating XML output for class bout::utils::details::ToString Generating XML output for class TypeContainer Generating XML output for class Uncopyable Generating XML output for class FV::Upwind Generating XML output for class uuids::uuid Generating XML output for class uuids::uuid_name_generator Generating XML output for class uuids::uuid_system_generator Generating XML output for class uuids::uuid_time_generator Generating XML output for class Solver::VarStr Generating XML output for class VDDX_C2 Generating XML output for class VDDX_C2_stag Generating XML output for class VDDX_C4 Generating XML output for class VDDX_C4_stag Generating XML output for class VDDX_U1 Generating XML output for class VDDX_U1_stag Generating XML output for class VDDX_U2 Generating XML output for class VDDX_U2_stag Generating XML output for class VDDX_U3 Generating XML output for class VDDX_WENO3 Generating XML output for class Vector2D Generating XML output for class Vector3D Generating XML output for class PetscVector::VectorDeleter Generating XML output for class WithQuietOutput Generating XML output for class BoutMesh::XDecompositionIndices Generating XML output for class XZBilinear Generating XML output for class XZHermiteSpline Generating XML output for class XZInterpolation Generating XML output for class XZInterpolationFactory Generating XML output for class XZLagrange4pt Generating XML output for class XZMonotonicHermiteSpline Generating XML output for class BoutMesh::YDecompositionIndices Generating XML output for class LaplaceXZpetsc::YSlice Generating XML output for class ZHermiteSpline Generating XML output for class ZInterpolation Generating XML output for class ZInterpolationFactory Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace Generating XML output for namespace bout Generating XML output for namespace bout Generating XML output for namespace bout Generating XML output for namespace bout::build Generating XML output for namespace bout::derivatives Generating XML output for namespace bout::derivatives::index Generating XML output for namespace bout::details Generating XML output for namespace bout::experimental Generating XML output for namespace bout::fft Generating XML output for namespace bout::fft Generating XML output for namespace bout::generator Generating XML output for namespace bout::globals Generating XML output for namespace bout::inversion Generating XML output for namespace bout::utils Generating XML output for namespace bout::utils::details Generating XML output for namespace fmt Generating XML output for namespace FV Generating XML output for namespace gen_fieldops Generating XML output for namespace netCDF Generating XML output for namespace parallel_boundary_stencil Generating XML output for namespace parallel_stencil Generating XML output for namespace pvode Generating XML output for namespace SI Generating XML output for namespace std Generating XML output for namespace std::literals Generating XML output for namespace std::string_literals Generating XML output for namespace stencils_sympy Generating XML output for namespace sundials Generating XML output for namespace uuids Generating XML output for namespace uuids::detail Generating XML output for file adios_object.hxx Generating XML output for file array.hxx Generating XML output for file assert.hxx Generating XML output for file boundary_factory.hxx Generating XML output for file boundary_op.hxx Generating XML output for file boundary_region.hxx Generating XML output for file boundary_standard.hxx Generating XML output for file bout.hxx Generating XML output for file bout_enum_class.hxx Generating XML output for file bout_types.hxx Generating XML output for file boutcomm.hxx Generating XML output for file boutexception.hxx Generating XML output for file build_config.hxx Generating XML output for file caliper_wrapper.hxx Generating XML output for file constants.hxx Generating XML output for file coordinates.hxx Generating XML output for file coordinates_accessor.hxx Generating XML output for file cyclic_reduction.hxx Generating XML output for file dcomplex.hxx Generating XML output for file deriv_store.hxx Generating XML output for file derivs.hxx Generating XML output for file difops.hxx Generating XML output for file expr.hxx Generating XML output for file fft.hxx Generating XML output for file field.hxx Generating XML output for file field2d.hxx Generating XML output for file field3d.hxx Generating XML output for file field_accessor.hxx Generating XML output for file field_data.hxx Generating XML output for file field_factory.hxx Generating XML output for file fieldgroup.hxx Generating XML output for file fieldperp.hxx Generating XML output for file fv_ops.hxx Generating XML output for file generic_factory.hxx Generating XML output for file globalfield.hxx Generating XML output for file globalindexer.hxx Generating XML output for file globals.hxx Generating XML output for file griddata.hxx Generating XML output for file gyro_average.hxx Generating XML output for file hypre_interface.hxx Generating XML output for file hyprelib.hxx Generating XML output for file index_derivs.hxx Generating XML output for file index_derivs_interface.hxx Generating XML output for file initialprofiles.hxx Generating XML output for file interpolation.hxx Generating XML output for file interpolation_xz.hxx Generating XML output for file interpolation_z.hxx Generating XML output for file laplacexy.hxx Generating XML output for file laplacexy2.hxx Generating XML output for file laplacexy2_hypre.hxx Generating XML output for file laplacexz.hxx Generating XML output for file invert_laplace.hxx Generating XML output for file invert_parderiv.hxx Generating XML output for file invert_pardiv.hxx Generating XML output for file invertable_operator.hxx Generating XML output for file lapack_routines.hxx Generating XML output for file macro_for_each.hxx Generating XML output for file mask.hxx Generating XML output for file mesh.hxx Generating XML output for file monitor.hxx Generating XML output for file mpi_wrapper.hxx Generating XML output for file msg_stack.hxx Generating XML output for file multiostream.hxx Generating XML output for file openmpwrap.hxx Generating XML output for file operatorstencil.hxx Generating XML output for file options.hxx Generating XML output for file options_io.hxx Generating XML output for file optionsreader.hxx Generating XML output for file output.hxx Generating XML output for file output_bout_types.hxx Generating XML output for file parallel_boundary_op.hxx Generating XML output for file parallel_boundary_region.hxx Generating XML output for file paralleltransform.hxx Generating XML output for file petsc_interface.hxx Generating XML output for file petsclib.hxx Generating XML output for file physicsmodel.hxx Generating XML output for file rajalib.hxx Generating XML output for file region.hxx Generating XML output for file rkscheme.hxx Generating XML output for file rvec.hxx Generating XML output for file scorepwrapper.hxx Generating XML output for file single_index_ops.hxx Generating XML output for file slepclib.hxx Generating XML output for file smoothing.hxx Generating XML output for file snb.hxx Generating XML output for file solver.hxx Generating XML output for file solverfactory.hxx Generating XML output for file sourcex.hxx Generating XML output for file stencils.hxx Generating XML output for file sundials_backports.hxx Generating XML output for file surfaceiter.hxx Generating XML output for file expressionparser.hxx Generating XML output for file generator_context.hxx Generating XML output for file gettext.hxx Generating XML output for file range.hxx Generating XML output for file timer.hxx Generating XML output for file type_name.hxx Generating XML output for file uncopyable.hxx Generating XML output for file uuid.h Generating XML output for file variant.hxx Generating XML output for file template_combinations.hxx Generating XML output for file traits.hxx Generating XML output for file unused.hxx Generating XML output for file utils.hxx Generating XML output for file vecops.hxx Generating XML output for file vector2d.hxx Generating XML output for file vector3d.hxx Generating XML output for file vectormetric.hxx Generating XML output for file where.hxx Generating XML output for file bout++-time.cxx Generating XML output for file bout++-time.hxx Generating XML output for file bout++.cxx Generating XML output for file field.cxx Generating XML output for file field2d.cxx Generating XML output for file field3d.cxx Generating XML output for file field_data.cxx Generating XML output for file field_factory.cxx Generating XML output for file fieldgenerators.cxx Generating XML output for file fieldgenerators.hxx Generating XML output for file fieldgroup.cxx Generating XML output for file fieldperp.cxx Generating XML output for file gen_fieldops.py Generating XML output for file generated_fieldops.cxx Generating XML output for file globalfield.cxx Generating XML output for file initialprofiles.cxx Generating XML output for file vecops.cxx Generating XML output for file vector2d.cxx Generating XML output for file vector3d.cxx Generating XML output for file where.cxx Generating XML output for file fft_fftw.cxx Generating XML output for file lapack_routines.cxx Generating XML output for file cyclic_laplace.cxx Generating XML output for file cyclic_laplace.hxx Generating XML output for file hypre3d_laplace.cxx Generating XML output for file hypre3d_laplace.hxx Generating XML output for file iterative_parallel_tri.cxx Generating XML output for file iterative_parallel_tri.hxx Generating XML output for file multigrid_alg.cxx Generating XML output for file multigrid_laplace.cxx Generating XML output for file multigrid_laplace.hxx Generating XML output for file multigrid_solver.cxx Generating XML output for file naulin_laplace.cxx Generating XML output for file naulin_laplace.hxx Generating XML output for file pcr.cxx Generating XML output for file pcr.hxx Generating XML output for file pcr_thomas.cxx Generating XML output for file pcr_thomas.hxx Generating XML output for file petsc_laplace.cxx Generating XML output for file petsc_laplace.hxx Generating XML output for file petsc3damg.cxx Generating XML output for file petsc3damg.hxx Generating XML output for file serial_band.cxx Generating XML output for file serial_band.hxx Generating XML output for file serial_tri.cxx Generating XML output for file serial_tri.hxx Generating XML output for file spt.cxx Generating XML output for file spt.hxx Generating XML output for file invert_laplace.cxx Generating XML output for file laplacexy.cxx Generating XML output for file laplacexy2.cxx Generating XML output for file laplacexy2_hypre.cxx Generating XML output for file laplacexz-cyclic.cxx Generating XML output for file laplacexz-cyclic.hxx Generating XML output for file laplacexz-petsc.cxx Generating XML output for file laplacexz-petsc.hxx Generating XML output for file laplacexz.cxx Generating XML output for file cyclic.cxx Generating XML output for file cyclic.hxx Generating XML output for file invert_parderiv.cxx Generating XML output for file pardiv_cyclic.cxx Generating XML output for file pardiv_cyclic.hxx Generating XML output for file invert_pardiv.cxx Generating XML output for file boundary_factory.cxx Generating XML output for file boundary_region.cxx Generating XML output for file boundary_standard.cxx Generating XML output for file coordinates.cxx Generating XML output for file coordinates_accessor.cxx Generating XML output for file gridfromfile.cxx Generating XML output for file gridfromoptions.cxx Generating XML output for file difops.cxx Generating XML output for file fv_ops.cxx Generating XML output for file boutmesh.cxx Generating XML output for file boutmesh.hxx Generating XML output for file index_derivs.cxx Generating XML output for file bilinear_xz.cxx Generating XML output for file hermite_spline_xz.cxx Generating XML output for file hermite_spline_z.cxx Generating XML output for file interpolation_z.cxx Generating XML output for file lagrange_4pt_xz.cxx Generating XML output for file monotonic_hermite_spline_xz.cxx Generating XML output for file interpolation_xz.cxx Generating XML output for file invert3x3.hxx Generating XML output for file mesh.cxx Generating XML output for file fci.cxx Generating XML output for file fci.hxx Generating XML output for file identity.cxx Generating XML output for file shiftedmetric.cxx Generating XML output for file shiftedmetricinterp.cxx Generating XML output for file shiftedmetricinterp.hxx Generating XML output for file parallel_boundary_op.cxx Generating XML output for file parallel_boundary_region.cxx Generating XML output for file parallel_boundary_stencil.cxx.py Generating XML output for file stencils_sympy.py Generating XML output for file surfaceiter.cxx Generating XML output for file gyro_average.cxx Generating XML output for file physicsmodel.cxx Generating XML output for file smoothing.cxx Generating XML output for file snb.cxx Generating XML output for file sourcex.cxx Generating XML output for file adams_bashforth.cxx Generating XML output for file adams_bashforth.hxx Generating XML output for file arkode.cxx Generating XML output for file arkode.hxx Generating XML output for file cvode.cxx Generating XML output for file cvode.hxx Generating XML output for file euler.cxx Generating XML output for file euler.hxx Generating XML output for file ida.cxx Generating XML output for file ida.hxx Generating XML output for file imex-bdf2.cxx Generating XML output for file imex-bdf2.hxx Generating XML output for file petsc.cxx Generating XML output for file petsc.hxx Generating XML output for file power.cxx Generating XML output for file power.hxx Generating XML output for file pvode.cxx Generating XML output for file pvode.hxx Generating XML output for file rk3-ssp.cxx Generating XML output for file rk3-ssp.hxx Generating XML output for file rk4.cxx Generating XML output for file rk4.hxx Generating XML output for file cashkarp.cxx Generating XML output for file cashkarp.hxx Generating XML output for file rk4simple.cxx Generating XML output for file rk4simple.hxx Generating XML output for file rkf34.cxx Generating XML output for file rkf34.hxx Generating XML output for file rkf45.cxx Generating XML output for file rkf45.hxx Generating XML output for file rkgeneric.cxx Generating XML output for file rkgeneric.hxx Generating XML output for file rkscheme.cxx Generating XML output for file slepc.cxx Generating XML output for file slepc.hxx Generating XML output for file snes.cxx Generating XML output for file snes.hxx Generating XML output for file split-rk.cxx Generating XML output for file split-rk.hxx Generating XML output for file solver.cxx Generating XML output for file adios_object.cxx Generating XML output for file bout_types.cxx Generating XML output for file boutcomm.cxx Generating XML output for file boutexception.cxx Generating XML output for file derivs.cxx Generating XML output for file expressionparser.cxx Generating XML output for file generator_context.cxx Generating XML output for file hyprelib.cxx Generating XML output for file msg_stack.cxx Generating XML output for file options.cxx Generating XML output for file optionparser.hxx Generating XML output for file options_adios.cxx Generating XML output for file options_adios.hxx Generating XML output for file options_ini.cxx Generating XML output for file options_ini.hxx Generating XML output for file options_io.cxx Generating XML output for file options_netcdf.cxx Generating XML output for file options_netcdf.hxx Generating XML output for file optionsreader.cxx Generating XML output for file output.cxx Generating XML output for file petsclib.cxx Generating XML output for file range.cxx Generating XML output for file slepclib.cxx Generating XML output for file timer.cxx Generating XML output for file type_name.cxx Generating XML output for file utils.cxx Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/adams_bashforth/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/arkode/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/impls/bout/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/impls/cashkarp/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/cvode/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/cyclic/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplacexz/impls/cyclic/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/parderiv/impls/cyclic/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/pardiv/impls/cyclic/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/data/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/euler/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/field/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/hypre3d/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/ida/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/imex-bdf2/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplacexz/impls/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/parderiv/impls/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/pardiv/impls/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/impls/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/impls/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/interpolation/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/invert/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/iterative_parallel_tri/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplacexy/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplacexy2/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplacexz/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/multigrid/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/naulin/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/options/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/mesh/parallel/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/parderiv/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/pardiv/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/pcr/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/pcr_thomas/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/petsc/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplacexz/impls/petsc/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/petsc/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/petsc3damg/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/physics/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/power/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/pvode/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rk3-ssp/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rk4/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/impls/rk4simple/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/impls/rkf34/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/impls/rkf45/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/rkgeneric/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/serial_band/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/serial_tri/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/slepc/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/snes/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/solver/impls/split-rk/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/invert/laplace/impls/spt/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/include/bout/sys/ Generate XML output for dir /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/src/sys/ Generating XML output for the main page Running plantuml with JAVA... type lookup cache used 9990/65536 hits=83545 misses=10740 symbol lookup cache used 30592/65536 hits=276957 misses=30592 finished... PYTHONPATH=../tools/pylib:$PYTHONPATH sphinx-build -b html sphinx/ html/ Running Sphinx v9.1.0 breathe module not installed recommonmark module not installed loading translations [en]... done making output directory... done Converting `source_suffix = ['.rst', '.md']` to `source_suffix = {'.rst': 'restructuredtext', '.md': 'restructuredtext'}`. building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 48 source files that are out of date updating environment: [new config] 48 added, 0 changed, 0 removed reading sources... [ 2%] _apidoc/boutdata reading sources... [ 4%] _apidoc/boutpp reading sources... [ 6%] _apidoc/boututils No mlab available reading sources... [ 8%] _apidoc/zoidberg reading sources... [ 10%] api_reference reading sources... [ 12%] developer_docs/code_layout reading sources... [ 15%] developer_docs/contributing reading sources... [ 17%] developer_docs/data_types reading sources... [ 19%] developer_docs/debugging reading sources... [ 21%] developer_docs/file_io reading sources... [ 23%] developer_docs/git_basics reading sources... [ 25%] developer_docs/mesh reading sources... [ 27%] developer_docs/natural_language reading sources... [ 29%] developer_docs/performance_profiling reading sources... [ 31%] developer_docs/petsc_interface reading sources... [ 33%] index reading sources... [ 35%] user_docs/BOUT_Gradperp_op reading sources... [ 38%] user_docs/adios2 reading sources... [ 40%] user_docs/advanced_install reading sources... [ 42%] user_docs/algebraic_operators reading sources... [ 44%] user_docs/boundary_options reading sources... [ 46%] user_docs/bout_functions_for_physics reading sources... [ 48%] user_docs/bout_options reading sources... [ 50%] user_docs/coordinates reading sources... [ 52%] user_docs/differential_operators reading sources... [ 54%] user_docs/eigenvalue_solver reading sources... [ 56%] user_docs/gpu_support reading sources... 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[100%] user_docs/variable_init WARNING: autodoc: failed to import 'cbdtoeqdsk' from module 'boutdata'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ModuleNotFoundError: No module named 'boutdata.cbdtoeqdsk' [autodoc.import_object] :1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :no-index: for one of them WARNING: autodoc: failed to import 'gen_surface' from module 'boutdata'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ModuleNotFoundError: No module named 'boutdata.gen_surface' [autodoc.import_object] WARNING: autodoc: failed to import 'input' from module 'boutdata'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ModuleNotFoundError: No module named 'boutdata.input' [autodoc.import_object] WARNING: autodoc: failed to import 'mayavi2' from module 'boutdata'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ModuleNotFoundError: No module named 'boutdata.mayavi2' [autodoc.import_object] /usr/lib/python3.14/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:5: ERROR: Unexpected indentation. [docutils] /usr/lib/python3.14/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:6: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] WARNING: autodoc: failed to import 'settings' from module 'boutdata'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ModuleNotFoundError: No module named 'boutdata.settings' [autodoc.import_object] WARNING: autodoc: failed to import 'boutpp'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ModuleNotFoundError: No module named 'boutpp' [autodoc.import_object] WARNING: autodoc: failed to import 'analyse_equil_2' from module 'boututils'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ModuleNotFoundError: No module named 'boututils.analyse_equil_2' [autodoc.import_object] WARNING: autodoc: failed to import 'anim' from module 'boututils'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module module = importlib.import_module(modname) File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "", line 1406, in _gcd_import File "", line 1371, in _find_and_load File "", line 1342, in _find_and_load_unlocked File "", line 938, in _load_unlocked File "", line 759, in exec_module File "", line 491, in _call_with_frames_removed File "/usr/lib/python3.14/site-packages/boututils/anim.py", line 19, in from tvtk.tools import visual ModuleNotFoundError: No module named 'tvtk' [autodoc.import_object] WARNING: autodoc: failed to import 'ask' from module 'boututils'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ModuleNotFoundError: No module named 'boututils.ask' [autodoc.import_object] WARNING: autodoc: failed to import 'boutgrid' from module 'boututils'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module module = importlib.import_module(modname) File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "", line 1406, in _gcd_import File "", line 1371, in _find_and_load File "", line 1342, in _find_and_load_unlocked File "", line 938, in _load_unlocked File "", line 759, in exec_module File "", line 491, in _call_with_frames_removed File "/usr/lib/python3.14/site-packages/boututils/boutgrid.py", line 3, in from tvtk.api import tvtk ModuleNotFoundError: No module named 'tvtk' [autodoc.import_object] looking for now-outdated files... /usr/lib/python3.14/site-packages/boututils/calculus.py:docstring of boututils.calculus.deriv2D:14: ERROR: Unexpected indentation. [docutils] WARNING: autodoc: failed to import 'closest_line' from module 'boututils'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ModuleNotFoundError: No module named 'boututils.closest_line' [autodoc.import_object] WARNING: autodoc: failed to import 'crosslines' from module 'boututils'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ModuleNotFoundError: No module named 'boututils.crosslines' [autodoc.import_object] WARNING: autodoc: failed to import 'efit_analyzer' from module 'boututils'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ModuleNotFoundError: No module named 'boututils.efit_analyzer' [autodoc.import_object] WARNING: autodoc: failed to import 'fft_deriv' from module 'boututils'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ModuleNotFoundError: No module named 'boututils.fft_deriv' [autodoc.import_object] WARNING: autodoc: failed to import 'file_import' from module 'boututils'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ModuleNotFoundError: No module named 'boututils.file_import' [autodoc.import_object] WARNING: autodoc: failed to import 'geqdsk' from module 'boututils'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ModuleNotFoundError: No module named 'boututils.geqdsk' [autodoc.import_object] WARNING: autodoc: failed to import 'idl_tabulate' from module 'boututils'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ModuleNotFoundError: No module named 'boututils.idl_tabulate' [autodoc.import_object] WARNING: autodoc: failed to import 'int_func' from module 'boututils'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module module = importlib.import_module(modname) File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "", line 1406, in _gcd_import File "", line 1371, in _find_and_load File "", line 1342, in _find_and_load_unlocked File "", line 938, in _load_unlocked File "", line 759, in exec_module File "", line 491, in _call_with_frames_removed File "/usr/lib/python3.14/site-packages/boututils/int_func.py", line 4, in from past.utils import old_div ModuleNotFoundError: No module named 'past' [autodoc.import_object] WARNING: autodoc: failed to import 'local_min_max' from module 'boututils'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ModuleNotFoundError: No module named 'boututils.local_min_max' [autodoc.import_object] WARNING: autodoc: failed to import 'mode_structure' from module 'boututils'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module module = importlib.import_module(modname) File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "", line 1406, in _gcd_import File "", line 1371, in _find_and_load File "", line 1342, in _find_and_load_unlocked File "", line 938, in _load_unlocked File "", line 759, in exec_module File "", line 491, in _call_with_frames_removed File "/usr/lib/python3.14/site-packages/boututils/mode_structure.py", line 4, in from past.utils import old_div ModuleNotFoundError: No module named 'past' [autodoc.import_object] WARNING: autodoc: failed to import 'moment_xyzt' from module 'boututils'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module module = importlib.import_module(modname) File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "", line 1406, in _gcd_import File "", line 1371, in _find_and_load File "", line 1342, in _find_and_load_unlocked File "", line 938, in _load_unlocked File "", line 759, in exec_module File "", line 491, in _call_with_frames_removed File "/usr/lib/python3.14/site-packages/boututils/moment_xyzt.py", line 2, in from past.utils import old_div ModuleNotFoundError: No module named 'past' [autodoc.import_object] WARNING: autodoc: failed to import 'options' from module 'boututils'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ModuleNotFoundError: No module named 'boututils.options' [autodoc.import_object] WARNING: autodoc: failed to import 'radial_grid' from module 'boututils'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ModuleNotFoundError: No module named 'boututils.radial_grid' [autodoc.import_object] WARNING: autodoc: failed to import 'read_geqdsk' from module 'boututils'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ModuleNotFoundError: No module named 'boututils.read_geqdsk' [autodoc.import_object] WARNING: autodoc: failed to import 'spectrogram' from module 'boututils'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module module = importlib.import_module(modname) File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "", line 1406, in _gcd_import File "", line 1371, in _find_and_load File "", line 1342, in _find_and_load_unlocked File "", line 938, in _load_unlocked File "", line 759, in exec_module File "", line 491, in _call_with_frames_removed File "/usr/lib/python3.14/site-packages/boututils/spectrogram.py", line 10, in from scipy import fftpack, pi ImportError: cannot import name 'pi' from 'scipy' (/usr/lib64/python3.14/site-packages/scipy/__init__.py) [autodoc.import_object] WARNING: autodoc: failed to import 'surface_average' from module 'boututils'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module module = importlib.import_module(modname) File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "", line 1406, in _gcd_import File "", line 1371, in _find_and_load File "", line 1342, in _find_and_load_unlocked File "", line 938, in _load_unlocked File "", line 759, in exec_module File "", line 491, in _call_with_frames_removed File "/usr/lib/python3.14/site-packages/boututils/surface_average.py", line 5, in from past.utils import old_div ModuleNotFoundError: No module named 'past' [autodoc.import_object] WARNING: autodoc: failed to import 'volume_integral' from module 'boututils'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module module = importlib.import_module(modname) File "/usr/lib64/python3.14/importlib/__init__.py", line 88, in import_module return _bootstrap._gcd_import(name[level:], package, level) ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "", line 1406, in _gcd_import File "", line 1371, in _find_and_load File "", line 1342, in _find_and_load_unlocked File "", line 938, in _load_unlocked File "", line 759, in exec_module File "", line 491, in _call_with_frames_removed File "/usr/lib/python3.14/site-packages/boututils/volume_integral.py", line 4, in from past.utils import old_div ModuleNotFoundError: No module named 'past' [autodoc.import_object] WARNING: autodoc: failed to import 'watch' from module 'boututils'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 131, in _import_from_module_and_path module = _import_module(module_name, try_reload=True) File "/usr/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 218, in _import_module raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ModuleNotFoundError: No module named 'boututils.watch' [autodoc.import_object] /usr/lib/python3.14/site-packages/zoidberg/field.py:docstring of zoidberg.field.DommaschkPotentials:3: ERROR: Unexpected indentation. [docutils] :1: WARNING: duplicate object description of zoidberg.field.MagneticField.attributes, other instance in _apidoc/zoidberg, use :no-index: for one of them :1: WARNING: duplicate object description of zoidberg.field.MagneticField.boundary, other instance in _apidoc/zoidberg, use :no-index: for one of them /usr/lib/python3.14/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse:3: ERROR: Unexpected indentation. [docutils] /usr/lib/python3.14/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse.coil:3: ERROR: Unexpected indentation. [docutils] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/api_reference.rst:4: WARNING: toctree glob pattern '_breathe_autogen/*' didn't match any documents /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/file_io.rst:114: ERROR: Unknown interpreted text role "py". [docutils] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/performance_profiling.rst:85: WARNING: Inline literal start-string without end-string. [docutils] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/boundary_options.rst:120: WARNING: Footnote [#] is not referenced. [ref.footnote] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/installing.rst:400: WARNING: Title underline too short. Working with an active ``conda`` environment ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [docutils] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/installing.rst:406: ERROR: Unexpected indentation. [docutils] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/installing.rst:407: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] :1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :no-index: for one of them :1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :no-index: for one of them :1: WARNING: duplicate object description of boutdata.BoutArray, other instance in _apidoc/boutdata, use :no-index: for one of them :1: WARNING: duplicate object description of boutdata.BoutArray.dims_from_type, other instance in _apidoc/boutdata, use :no-index: for one of them :1: WARNING: duplicate object description of boutdata.BoutArray.get_dims_type, other instance in _apidoc/boutdata, use :no-index: for one of them :1: WARNING: duplicate object description of boutdata.BoutArray.type_from_dims, other instance in _apidoc/boutdata, use :no-index: for one of them :1: WARNING: duplicate object description of boutdata.alwayswarn, other instance in _apidoc/boutdata, use :no-index: for one of them :1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :no-index: for one of them :1: WARNING: duplicate object description of boutdata.build_and_log, other instance in _apidoc/boutdata, use :no-index: for one of them :1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :no-index: for one of them :1: WARNING: duplicate object description of boutdata.determineNumberOfCPUs, other instance in _apidoc/boutdata, use :no-index: for one of them :1: WARNING: duplicate object description of boutdata.launch, other instance in _apidoc/boutdata, use :no-index: for one of them :1: WARNING: duplicate object description of boutdata.launch_safe, other instance in _apidoc/boutdata, use :no-index: for one of them :1: WARNING: duplicate object description of boutdata.shell, other instance in _apidoc/boutdata, use :no-index: for one of them :1: WARNING: duplicate object description of boutdata.shell_safe, other instance in _apidoc/boutdata, use :no-index: for one of them /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/running_bout.rst:462: WARNING: Literal block expected; none found. [docutils] none found pickling environment... done checking consistency... done preparing documents... WARNING: unsupported theme option 'repository_url' given WARNING: unsupported theme option 'repository_branch' given WARNING: unsupported theme option 'path_to_docs' given WARNING: unsupported theme option 'use_edit_page_button' given WARNING: unsupported theme option 'use_repository_button' given WARNING: unsupported theme option 'use_issues_button' given WARNING: unsupported theme option 'home_page_in_toc' given done copying assets... copying static files... Writing evaluated template result to /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/html/_static/language_data.js Writing evaluated template result to /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/html/_static/documentation_options.js Writing evaluated template result to /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/html/_static/basic.css Writing evaluated template result to /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/html/_static/sphinxdoc.css copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 2%] _apidoc/boutdata writing output... [ 4%] _apidoc/boutpp writing output... [ 6%] _apidoc/boututils writing output... [ 8%] _apidoc/zoidberg writing output... [ 10%] api_reference writing output... [ 12%] developer_docs/code_layout writing output... [ 15%] developer_docs/contributing writing output... [ 17%] developer_docs/data_types writing output... [ 19%] developer_docs/debugging writing output... [ 21%] developer_docs/file_io writing output... [ 23%] developer_docs/git_basics writing output... [ 25%] developer_docs/mesh writing output... [ 27%] developer_docs/natural_language writing output... [ 29%] developer_docs/performance_profiling writing output... [ 31%] developer_docs/petsc_interface writing output... [ 33%] index writing output... [ 35%] user_docs/BOUT_Gradperp_op writing output... [ 38%] user_docs/adios2 writing output... [ 40%] user_docs/advanced_install writing output... [ 42%] user_docs/algebraic_operators writing output... [ 44%] user_docs/boundary_options writing output... [ 46%] user_docs/bout_functions_for_physics writing output... [ 48%] user_docs/bout_options writing output... [ 50%] user_docs/coordinates writing output... [ 52%] user_docs/differential_operators writing output... [ 54%] user_docs/eigenvalue_solver writing output... [ 56%] user_docs/gpu_support writing output... [ 58%] user_docs/input_grids writing output... [ 60%] user_docs/installing writing output... [ 62%] user_docs/introduction writing output... [ 65%] user_docs/invertable_operator writing output... [ 67%] user_docs/laplacian writing output... [ 69%] user_docs/makefiles writing output... [ 71%] user_docs/new_in_v5 writing output... [ 73%] user_docs/nonlocal writing output... [ 75%] user_docs/output_and_post writing output... [ 77%] user_docs/parallel-transforms writing output... [ 79%] user_docs/petsc writing output... [ 81%] user_docs/physics_models writing output... [ 83%] user_docs/preconditioning writing output... [ 85%] user_docs/python writing output... [ 88%] user_docs/python_boutpp writing output... [ 90%] user_docs/quickstart writing output... [ 92%] user_docs/running_bout writing output... [ 94%] user_docs/staggered_grids writing output... [ 96%] user_docs/testing writing output... [ 98%] user_docs/time_integration writing output... [100%] user_docs/variable_init /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:81: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:87: WARNING: unknown document: '../_breathe_autogen/file/field2d_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:93: WARNING: unknown document: '../_breathe_autogen/file/field3d_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:100: WARNING: unknown document: '../_breathe_autogen/file/field__data_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:105: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:112: WARNING: unknown document: '../_breathe_autogen/file/initialprofiles_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/vecops_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:124: WARNING: unknown document: '../_breathe_autogen/file/vector2d_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:129: WARNING: unknown document: '../_breathe_autogen/file/vector3d_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:133: WARNING: unknown document: '../_breathe_autogen/file/where_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft__fftw_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft_8hxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:146: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:154: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8hxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:156: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:160: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8hxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:162: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:166: WARNING: unknown document: '../_breathe_autogen/file/spt_8hxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:168: WARNING: unknown document: '../_breathe_autogen/file/spt_8cxx' [ref.doc] 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/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:212: WARNING: unknown document: '../_breathe_autogen/file/mesh_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:220: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:224: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8hxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:228: WARNING: unknown document: '../_breathe_autogen/file/gyro__average_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:231: WARNING: unknown document: '../_breathe_autogen/file/smoothing_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:234: WARNING: unknown document: '../_breathe_autogen/file/sourcex_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:240: WARNING: unknown document: '../_breathe_autogen/file/solver_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:247: WARNING: unknown document: '../_breathe_autogen/file/cvode_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:251: WARNING: unknown document: '../_breathe_autogen/file/cvode_8hxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:255: WARNING: unknown document: '../_breathe_autogen/file/ida_8cxx' [ref.doc] 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/builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:278: WARNING: unknown document: '../_breathe_autogen/file/boutcomm_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:280: WARNING: unknown document: '../_breathe_autogen/file/boutexception_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:289: WARNING: unknown document: '../_breathe_autogen/file/msg__stack_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:296: WARNING: unknown document: '../_breathe_autogen/file/options_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:300: WARNING: unknown document: '../_breathe_autogen/file/optionsreader_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:302: WARNING: unknown document: '../_breathe_autogen/file/output_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:304: WARNING: unknown document: '../_breathe_autogen/file/range_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:308: WARNING: unknown document: '../_breathe_autogen/file/timer_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:312: WARNING: unknown document: '../_breathe_autogen/file/utils_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:318: WARNING: unknown document: '../_breathe_autogen/file/optionparser_8hxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:320: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/code_layout.rst:322: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8hxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/developer_docs/mesh.rst:31: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field2d_8hxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field3d_8hxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8hxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: '&' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] & ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] & ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] & ^ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: '|' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] | ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] | ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] | ^ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: 'false' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5] false -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5] false -----^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5] false -----^ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:139: WARNING: Unparseable C++ cross-reference: 'true' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4] true ----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4] true ----^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4] true ----^ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:153: WARNING: Unparseable C++ cross-reference: '>' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] > ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] > ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] > ^ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:153: WARNING: Unparseable C++ cross-reference: '<' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] < ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] < ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] < ^ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:163: WARNING: Unparseable C++ cross-reference: 'true' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4] true ----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4] true ----^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4] true ----^ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:163: WARNING: Unparseable C++ cross-reference: 'false' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5] false -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5] false -----^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5] false -----^ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: 'true' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4] true ----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4] true ----^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name, got keyword: true [error at 4] true ----^ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: 'false' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5] false -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5] false -----^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name, got keyword: false [error at 5] false -----^ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: '&' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] & ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] & ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] & ^ /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/bout_options.rst:168: WARNING: Unparseable C++ cross-reference: '|' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] | ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] | ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] | ^ generating indices... /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/differential_operators.rst:530: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/differential_operators.rst:538: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/laplacian.rst:185: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx' [ref.doc] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/output_and_post.rst:580: WARNING: Lexing literal_block 'AppendTo[$Path,"/full/path/to/BOUT/tools/mathematicalib"]' as "mathematica" resulted in an error at token: '$'. Retrying in relaxed mode. [misc.highlighting_failure] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/physics_models.rst:31: WARNING: undefined label: 'sec-cmake' [ref.ref] /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/sphinx/user_docs/time_integration.rst:1087: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' [ref.doc] genindex py-modindex done writing additional pages... search done copying images... [ 4%] figs/layout1.png copying images... [ 8%] figs/layout2.png copying images... [ 12%] figs/memory.png copying images... [ 15%] figs/petsc_interface_overview.png copying images... [ 19%] figs/operator_stencil_uml.png copying images... [ 23%] figs/petsc_vector_set.png copying images... [ 27%] figs/fluid_norm_mc.png copying images... [ 31%] figs/diffStencils.png copying images... [ 35%] figs/topology_cross_section.svg copying images... [ 38%] figs/topology_schematic.svg copying images... [ 42%] figs/boutmesh-comms.png copying images... 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Documentation available in file:///builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/html/index.html + popd ~/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.y6rt7B + umask 022 + cd /builddir/build/BUILD/bout++-5.2.0-build + '[' /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/bout++-5.2.0-build + mkdir /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BOUT++-v5.2.0 + for mpi in openmpi mpich + '[' openmpi = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=$' \t\n' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode=$'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=$' \t\n' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval $'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval $'MPI_COMPILER=\'openmpi-x86_64\'; export MPI_COMPILER;\nLD_LIBRARY_PATH=\'/usr/lib64/openmpi/lib\'; export LD_LIBRARY_PATH;\nMPI_MAN=\'/usr/share/man/openmpi-x86_64\'; export MPI_MAN;\nMANPATH=\'/usr/share/man/openmpi-x86_64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/openmpi-x86_64\'; export MPI_INCLUDE;\n_LMFILES_=\'/usr/share/modulefiles/mpi/openmpi-x86_64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/openmpi-x86_64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/openmpi\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.14/site-packages/openmpi\'; export MPI_PYTHON3_SITEARCH;\nMPI_HOME=\'/usr/lib64/openmpi\'; export MPI_HOME;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/openmpi\'; export MPI_FORTRAN_MOD_DIR;\n__MODULES_LMALTNAME=\'mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest\'; export __MODULES_LMALTNAME;\n__MODULES_LMCONFLICT=\'mpi/openmpi-x86_64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SUFFIX=\'_openmpi\'; export MPI_SUFFIX;\nMPI_SYSCONFIG=\'/etc/openmpi-x86_64\'; export MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_LIB=\'/usr/lib64/openmpi/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/openmpi/bin\'; export MPI_BIN;\ntest 0;' ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.14/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + DESTDIR=/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT + /usr/bin/cmake --install x86_64-redhat-linux-gnu_openmpi -- Install configuration: "RelWithDebInfo" -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/openmpi/boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/openmpi/boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so" to "/usr/lib64/openmpi/lib" -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/openmpi/boutpp/__init__.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/libpvode.so.1.0.0 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/libpvode.so.1.0.0" to "/usr/lib64/openmpi/lib" -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/libpvode.so -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/libpvpre.so.1.0.0 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/libpvpre.so.1.0.0" to "/usr/lib64/openmpi/lib" -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/libpvpre.so -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++ -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/vector.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/spgmr.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/smalldense.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/pvbbdpre.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/nvector.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/llnltyps.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/llnlmath.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/iterativ.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/cvspgmr.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/cvode.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/cvdiag.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/pvode/band.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/PVODE/PVODEConfig.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/PVODE/PVODEConfig-relwithdebinfo.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/locale/es/LC_MESSAGES/libbout.mo -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/locale/de/LC_MESSAGES/libbout.mo -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/locale/fr/LC_MESSAGES/libbout.mo -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/locale/zh_CN/LC_MESSAGES/libbout.mo -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/locale/zh_TW/LC_MESSAGES/libbout.mo -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/libbout++.so.5.2.0 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/libbout++.so.5.2.0" to "/usr/lib64/openmpi/lib" -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/libbout++.so -- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++ -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/where.hxx -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/vector3d.hxx -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/vector2d.hxx -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/vecops.hxx -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/utils.hxx -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/unused.hxx -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/stencils.hxx -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/sourcex.hxx -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/openmpi-x86_64/bout++/smoothing.hxx -- 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Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/update_citations.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout_4to5 -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout_3to4.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-v5-xzinterpolation-upgrader.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-v5-physics-model-upgrader.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-v5-macro-upgrader.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-v5-input-file-upgrader.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-v5-header-upgrader.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-v5-format-upgrader.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-v5-factory-upgrader.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-stop-script -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-sonnet -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-log-color -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-changelog-generator.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-build-deps.sh -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-boutdata-restart-create -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-archive-helper.sh -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-add-mod-path -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/bin/bout-config -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/openmpi/boutconfig/__init__.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/bout++Targets.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/bout++Targets-relwithdebinfo.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/bout++ConfigVersion.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/BOUT++functions.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/CorrectWindowsPaths.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindClangFormat.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindFFTW.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindHYPRE.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindnetCDF.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindnetCDFCxx.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindPackageMultipass.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindLibuuid.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindPETSc.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindScoreP.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindSLEPc.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/FindSUNDIALS.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/ResolveCompilerPaths.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/openmpi/lib/cmake/bout++/bout++Config.cmake ++ find /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/python3.14/site-packages/openmpi ++ grep -E '/libbout|/libpvode|/libpvpre' + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so: RUNPATH=/usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so: new RUNPATH: /usr/lib64/openmpi/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so.5.2.0 /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so.5.2.0: RUNPATH=/usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libbout++.so.5.2.0: new RUNPATH: /usr/lib64/openmpi/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so: RUNPATH=/usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so: new RUNPATH: /usr/lib64/openmpi/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so.1.0.0 /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so.1.0.0: RUNPATH=/usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvpre.so.1.0.0: new RUNPATH: /usr/lib64/openmpi/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so: RUNPATH=/usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so: new RUNPATH: /usr/lib64/openmpi/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so.1.0.0 /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so.1.0.0: RUNPATH=/usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/openmpi/lib/libpvode.so.1.0.0: new RUNPATH: /usr/lib64/openmpi/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/python3.14/site-packages/openmpi/boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/python3.14/site-packages/openmpi/boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so: RUNPATH=/usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/python3.14/site-packages/openmpi/boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so: new RUNPATH: /usr/lib64/openmpi/lib + rm -rf /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/bout++ + mkdir -p /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/modulefiles/bout++ + cat + '[' openmpi = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=$' \t\n' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/openmpi/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode=$'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=$' \t\n' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval $'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval $'unset MPI_COMPILER;\nunset LD_LIBRARY_PATH;\nunset MPI_MAN;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_HOME;\nunset MPI_FORTRAN_MOD_DIR;\nunset __MODULES_LMALTNAME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SUFFIX;\nunset MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in openmpi mpich + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=$' \t\n' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode=$'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\nLOADEDMODULES=\'\'; export LOADEDMODULES;\ntest 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=$' \t\n' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval $'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\nLOADEDMODULES=\'\'; export LOADEDMODULES;\ntest 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ LOADEDMODULES= ++++ export LOADEDMODULES ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval $'LD_LIBRARY_PATH=\'/usr/lib64/mpich/lib\'; export LD_LIBRARY_PATH;\nMPI_COMPILER=\'mpich-x86_64\'; export MPI_COMPILER;\nMANPATH=\'/usr/share/man/mpich-x86_64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/mpich-x86_64\'; export MPI_INCLUDE;\nMPI_MAN=\'/usr/share/man/mpich-x86_64\'; export MPI_MAN;\nMPI_PYTHON_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON_SITEARCH;\n_LMFILES_=\'/usr/share/modulefiles/mpi/mpich-x86_64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/mpich-x86_64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/mpich\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.14/site-packages/mpich\'; export MPI_PYTHON3_SITEARCH;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/mpich\'; export MPI_FORTRAN_MOD_DIR;\nMPI_HOME=\'/usr/lib64/mpich\'; export MPI_HOME;\n__MODULES_LMCONFLICT=\'mpi/mpich-x86_64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SYSCONFIG=\'/etc/mpich-x86_64\'; export MPI_SYSCONFIG;\nMPI_SUFFIX=\'_mpich\'; export MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_PYTHON2_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON2_SITEARCH;\nMPI_LIB=\'/usr/lib64/mpich/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/mpich/bin\'; export MPI_BIN;\ntest 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/mpich ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.14/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + DESTDIR=/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT + /usr/bin/cmake --install x86_64-redhat-linux-gnu_mpich -- Install configuration: "RelWithDebInfo" -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/mpich/boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/mpich/boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so" to "/usr/lib64/mpich/lib" -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/mpich/boutpp/__init__.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/libpvode.so.1.0.0 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/libpvode.so.1.0.0" to "/usr/lib64/mpich/lib" -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/libpvode.so -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/libpvpre.so.1.0.0 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/libpvpre.so.1.0.0" to "/usr/lib64/mpich/lib" -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/libpvpre.so -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++ -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/vector.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/spgmr.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/smalldense.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/pvbbdpre.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/nvector.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/llnltyps.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/llnlmath.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/iterativ.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/cvspgmr.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/cvode.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/cvdiag.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/pvode/band.h -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/PVODE/PVODEConfig.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/PVODE/PVODEConfig-relwithdebinfo.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/locale/es/LC_MESSAGES/libbout.mo -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/locale/de/LC_MESSAGES/libbout.mo -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/locale/fr/LC_MESSAGES/libbout.mo -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/locale/zh_CN/LC_MESSAGES/libbout.mo -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/locale/zh_TW/LC_MESSAGES/libbout.mo -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/libbout++.so.5.2.0 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/libbout++.so.5.2.0" to "/usr/lib64/mpich/lib" -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/libbout++.so -- Up-to-date: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++ -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/where.hxx -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/vector3d.hxx -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/vector2d.hxx -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/vecops.hxx -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/utils.hxx -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/unused.hxx -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/stencils.hxx -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/sourcex.hxx -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/smoothing.hxx -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/parallel_boundary_region.hxx -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/parallel_boundary_op.hxx -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/output.hxx -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/optionsreader.hxx -- Installing: 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/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/build_defines.hxx -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/revision.hxx -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/include/mpich-x86_64/bout++/bout/version.hxx -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/bin -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/bin/update_version_number_in_files.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/bin/update_citations.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/bin/bout_4to5 -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/bin/bout_3to4.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/bin/bout-v5-xzinterpolation-upgrader.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/bin/bout-v5-physics-model-upgrader.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/bin/bout-v5-macro-upgrader.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/bin/bout-v5-input-file-upgrader.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/bin/bout-v5-header-upgrader.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/bin/bout-v5-format-upgrader.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/bin/bout-v5-factory-upgrader.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/bin/bout-stop-script -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/bin/bout-sonnet -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/bin/bout-log-color -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/bin/bout-changelog-generator.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/bin/bout-build-deps.sh -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/bin/bout-boutdata-restart-create -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/bin/bout-archive-helper.sh -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/bin/bout-add-mod-path -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/bin/bout-config -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/mpich/boutconfig/__init__.py -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/bout++Targets.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/bout++Targets-relwithdebinfo.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/bout++ConfigVersion.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/BOUT++functions.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/CorrectWindowsPaths.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindClangFormat.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindFFTW.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindHYPRE.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindnetCDF.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindnetCDFCxx.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindPackageMultipass.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindLibuuid.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindPETSc.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindScoreP.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindSLEPc.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/FindSUNDIALS.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/ResolveCompilerPaths.cmake -- Installing: /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/mpich/lib/cmake/bout++/bout++Config.cmake ++ find /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/python3.14/site-packages/mpich ++ grep -E '/libbout|/libpvode|/libpvpre' + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so: RUNPATH=/usr/lib64/mpich/lib:/usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so: new RUNPATH: /usr/lib64/mpich/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so.5.2.0 /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so.5.2.0: RUNPATH=/usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libbout++.so.5.2.0: new RUNPATH: /usr/lib64/mpich/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so: RUNPATH=/usr/lib64/mpich/lib:/usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so: new RUNPATH: /usr/lib64/mpich/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so.1.0.0 /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so.1.0.0: RUNPATH=/usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvpre.so.1.0.0: new RUNPATH: /usr/lib64/mpich/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so: RUNPATH=/usr/lib64/mpich/lib:/usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so: new RUNPATH: /usr/lib64/mpich/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so.1.0.0 /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so.1.0.0: RUNPATH=/usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/mpich/lib/libpvode.so.1.0.0: new RUNPATH: /usr/lib64/mpich/lib + for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre') + chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/python3.14/site-packages/mpich/boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/python3.14/site-packages/mpich/boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so: RUNPATH=/usr/lib64/mpich/lib:/usr/lib64/mpich/lib /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT//usr/lib64/python3.14/site-packages/mpich/boutpp/libboutpp.cpython-314-x86_64-linux-gnu.so: new RUNPATH: /usr/lib64/mpich/lib + rm -rf /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/bout++ + mkdir -p /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/modulefiles/bout++ + cat + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=$' \t\n' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/mpich/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode=$'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=$' \t\n' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval $'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64 + eval $'unset LD_LIBRARY_PATH;\nunset MPI_COMPILER;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset MPI_MAN;\nunset MPI_PYTHON_SITEARCH;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_FORTRAN_MOD_DIR;\nunset MPI_HOME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SYSCONFIG;\nunset MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_PYTHON2_SITEARCH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ~/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/manual/html ~/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + pushd manual/html + find ./ -type f -not -path '*/.*' -not -path '.*/' -exec install -D '{}' '/builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/share/doc/bout++/{}' ';' + popd + /usr/lib/rpm/find-lang.sh /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT libbout ~/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 5.2.0-11.fc45 --unique-debug-suffix -5.2.0-11.fc45.x86_64 --unique-debug-src-base bout++-5.2.0-11.fc45.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0 find-debuginfo: starting Extracting debug info from 8 files DWARF-compressing 8 files sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match. 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./usr/share/doc/bout++/user_docs/time_integration.html is executable but has no shebang, removing executable bit *** WARNING: ./usr/share/doc/bout++/user_docs/variable_init.html is executable but has no shebang, removing executable bit *** WARNING: ./usr/share/doc/bout++/genindex.html is executable but has no shebang, removing executable bit *** WARNING: ./usr/share/doc/bout++/py-modindex.html is executable but has no shebang, removing executable bit *** WARNING: ./usr/share/doc/bout++/search.html is executable but has no shebang, removing executable bit *** WARNING: Cannot read the first line from ./usr/share/doc/bout++/searchindex.js, removing executable bit mangling shebang in /usr/lib64/mpich/bin/bout-config from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/mpich/bin/bout-add-mod-path from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-archive-helper.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib64/mpich/bin/bout-boutdata-restart-create from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-build-deps.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib64/mpich/bin/bout-changelog-generator.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-log-color from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/mpich/bin/bout-sonnet from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-stop-script from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib64/mpich/bin/bout-v5-factory-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-v5-format-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-v5-header-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-v5-input-file-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-v5-macro-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-v5-physics-model-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout-v5-xzinterpolation-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout_3to4.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/bout_4to5 from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib64/mpich/bin/update_citations.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/mpich/bin/update_version_number_in_files.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-config from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/openmpi/bin/bout-add-mod-path from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-archive-helper.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib64/openmpi/bin/bout-boutdata-restart-create from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-build-deps.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib64/openmpi/bin/bout-changelog-generator.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-log-color from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/openmpi/bin/bout-sonnet from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-stop-script from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib64/openmpi/bin/bout-v5-factory-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-v5-format-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-v5-header-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-v5-input-file-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-v5-macro-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-v5-physics-model-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout-v5-xzinterpolation-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout_3to4.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/bout_4to5 from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib64/openmpi/bin/update_citations.py from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib64/openmpi/bin/update_version_number_in_files.py from /usr/bin/env python3 to #!/usr/bin/python3 + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.14 using python3.14 Bytecompiling .py files below /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14 using python3.14 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-det --brp -j4 /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/mpich/boutconfig/__pycache__/__init__.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/mpich/boutpp/__pycache__/__init__.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/openmpi/boutconfig/__pycache__/__init__.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr/lib64/python3.14/site-packages/openmpi/boutpp/__pycache__/__init__.cpython-314.opt-1.pyc: rewriting with normalized contents Scanned 166 directories and 888 files, processed 55 inodes, 4 modified (0 replaced + 4 rewritten), 0 unsupported format, 0 errors + /usr/bin/linkdupes --brp /builddir/build/BUILD/bout++-5.2.0-build/BUILDROOT/usr Scanned 165 directories and 888 files, considered 882 files, read 532 files, linked 312 files, 0 errors sum of sizes of linked files: 6173874 bytes Reading /builddir/build/BUILD/bout++-5.2.0-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.HJtzeu + umask 022 + cd /builddir/build/BUILD/bout++-5.2.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BOUT++-v5.2.0 + for mpi in openmpi mpich + fail=1 + '[' openmpi = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=$' \t\n' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode=$'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=$' \t\n' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval $'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval $'MPI_COMPILER=\'openmpi-x86_64\'; export MPI_COMPILER;\nLD_LIBRARY_PATH=\'/usr/lib64/openmpi/lib\'; export LD_LIBRARY_PATH;\nMPI_MAN=\'/usr/share/man/openmpi-x86_64\'; export MPI_MAN;\nMANPATH=\'/usr/share/man/openmpi-x86_64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/openmpi-x86_64\'; export MPI_INCLUDE;\n_LMFILES_=\'/usr/share/modulefiles/mpi/openmpi-x86_64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/openmpi-x86_64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/openmpi\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.14/site-packages/openmpi\'; export MPI_PYTHON3_SITEARCH;\nMPI_HOME=\'/usr/lib64/openmpi\'; export MPI_HOME;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/openmpi\'; export MPI_FORTRAN_MOD_DIR;\n__MODULES_LMALTNAME=\'mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest\'; export __MODULES_LMALTNAME;\n__MODULES_LMCONFLICT=\'mpi/openmpi-x86_64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SUFFIX=\'_openmpi\'; export MPI_SUFFIX;\nMPI_SYSCONFIG=\'/etc/openmpi-x86_64\'; export MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_LIB=\'/usr/lib64/openmpi/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/openmpi/bin\'; export MPI_BIN;\ntest 0;' ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.14/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + export OMPI_MCA_rmaps_base_oversubscribe=yes + OMPI_MCA_rmaps_base_oversubscribe=yes + export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + export OMPI_ALLOW_RUN_AS_ROOT=1 + OMPI_ALLOW_RUN_AS_ROOT=1 + export OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1 + OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1 + export HDF5_USE_FILE_LOCKING=FALSE + HDF5_USE_FILE_LOCKING=FALSE + sed -i 's/ 3s / 30s /' tests/integrated/test-coordinates-initialization/runtest + SEGFAULT_SIGNALS=segv + /usr/bin/ctest --test-dir x86_64-redhat-linux-gnu_openmpi --output-on-failure --force-new-ctest-process -j4 -R serial_tests Test project /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi Start 1: serial_tests Could not find executable /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/serial_tests Looked in the following places: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/serial_tests /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/serial_tests /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/Release/serial_tests /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/Release/serial_tests /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/Debug/serial_tests /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/Debug/serial_tests /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/MinSizeRel/serial_tests /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/MinSizeRel/serial_tests /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/RelWithDebInfo/serial_tests /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/RelWithDebInfo/serial_tests /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/Deployment/serial_tests /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/Deployment/serial_tests /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/Development/serial_tests /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/Development/serial_tests builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/serial_tests builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/serial_tests builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/Release/serial_tests builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/Release/serial_tests builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/Debug/serial_tests builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/Debug/serial_tests builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/MinSizeRel/serial_tests builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/MinSizeRel/serial_tests builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/RelWithDebInfo/serial_tests builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/RelWithDebInfo/serial_tests builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/Deployment/serial_tests builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/Deployment/serial_tests builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/Development/serial_tests builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/Development/serial_tests 1/1 Test #1: serial_tests .....................***Not Run 0.00 sec 0% tests passed, 1 tests failed out of 1 Total Test time (real) = 0.00 sec The following tests FAILED: 1 - serial_tests (Not Run) Unable to find executable: /builddir/build/BUILD/bout++-5.2.0-build/BOUT++-v5.2.0/x86_64-redhat-linux-gnu_openmpi/tests/unit/serial_tests Errors while running CTest ++ exit 1 error: Bad exit status from /var/tmp/rpm-tmp.HJtzeu (%check) RPM build errors: Bad exit status from /var/tmp/rpm-tmp.HJtzeu (%check) Finish: rpmbuild bout++-5.2.0-11.fc45.src.rpm Finish: build phase for bout++-5.2.0-11.fc45.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1776423486.131948/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names ERROR: Exception(/var/lib/copr-rpmbuild/results/bout++-5.2.0-11.fc45.src.rpm) Config(fedora-rawhide-x86_64) 11 minutes 25 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_failure=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot ERROR: Command failed: # /usr/bin/systemd-nspawn -q -M 20cf862964974d1a9fc2ad2a7487a81c -D /var/lib/mock/fedora-rawhide-x86_64-1776423486.131948/root -a -u mockbuild --capability=cap_ipc_lock --capability=cap_ipc_lock --bind=/tmp/mock-resolv.idp1dioc:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin '--setenv=PROMPT_COMMAND=printf "\033]0;\007"' '--setenv=PS1= \s-\v\$ ' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/originals/bout++.spec' Copr build error: Build failed