Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c1d7' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/9534016-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 1.4 PID: 5083 Logging PID: 5085 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 9534016, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '9656d10c334b27224f0d5d72d30068a275babfa5', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/davidsch/testing/python-xbout', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'python-xbout', 'package_version': '0.3.6-6', 'project_dirname': 'testing', 'project_name': 'testing', 'project_owner': 'davidsch', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/davidsch/testing/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'davidsch/testing--davidsch', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': None, 'submitter': 'davidsch', 'tags': [], 'task_id': '9534016-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/davidsch/testing/python-xbout /var/lib/copr-rpmbuild/workspace/workdir-3dru4nab/python-xbout --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/davidsch/testing/python-xbout', '/var/lib/copr-rpmbuild/workspace/workdir-3dru4nab/python-xbout', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-3dru4nab/python-xbout'... Running: git checkout 9656d10c334b27224f0d5d72d30068a275babfa5 -- cmd: ['git', 'checkout', '9656d10c334b27224f0d5d72d30068a275babfa5', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-3dru4nab/python-xbout rc: 0 stdout: stderr: Note: switching to '9656d10c334b27224f0d5d72d30068a275babfa5'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 9656d10 automatic import of python-xbout Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-3dru4nab/python-xbout rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading xbout-0.3.6.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o xbout-0.3.6.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/davidsch/testing/python-xbout/xbout-0.3.6.tar.gz/md5/f4970400bb7c6d2380b222c0bb98302a/xbout-0.3.6.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 4692k 100 4692k 0 0 37.9M 0 --:--:-- --:--:-- --:--:-- 38.1M INFO: Reading stdout from command: md5sum xbout-0.3.6.tar.gz tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-3dru4nab/python-xbout/python-xbout.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-3dru4nab/python-xbout --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1757333401.214824 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.3 starting (python version = 3.13.5, NVR = mock-6.3-1.fc42), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-3dru4nab/python-xbout/python-xbout.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-3dru4nab/python-xbout --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1757333401.214824 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-3dru4nab/python-xbout/python-xbout.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.3 INFO: Mock Version: 6.3 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1757333401.214824/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-675e4f40-ac17-4291-9f4f-1fa7bf681038 INFO: Checking that 17bffe442d7b179007e38d841cf9a2f7547fe33d33ee3b73615ab4595d4fcdfa image matches host's architecture INFO: Copy content of container 17bffe442d7b179007e38d841cf9a2f7547fe33d33ee3b73615ab4595d4fcdfa to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1757333401.214824/root INFO: mounting 17bffe442d7b179007e38d841cf9a2f7547fe33d33ee3b73615ab4595d4fcdfa with podman image mount INFO: image 17bffe442d7b179007e38d841cf9a2f7547fe33d33ee3b73615ab4595d4fcdfa as /var/lib/containers/storage/overlay/0a42c98b554272d5fa835b592117910d85f5e7fd09f5a7cef02d1d95ee3a577f/merged INFO: umounting image 17bffe442d7b179007e38d841cf9a2f7547fe33d33ee3b73615ab4595d4fcdfa (/var/lib/containers/storage/overlay/0a42c98b554272d5fa835b592117910d85f5e7fd09f5a7cef02d1d95ee3a577f/merged) with podman image umount INFO: Removing image mock-bootstrap-675e4f40-ac17-4291-9f4f-1fa7bf681038 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1757333401.214824/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-5.99.92-1.fc44.x86_64 rpm-sequoia-1.9.0-2.fc43.x86_64 dnf5-5.2.17.0-1.fc44.x86_64 dnf5-plugins-5.2.17.0-1.fc44.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Copr repository 100% | 70.2 KiB/s | 10.0 KiB | 00m00s fedora 100% | 18.3 MiB/s | 21.8 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.3.0-2.fc43 fedora 8.4 MiB bzip2 x86_64 1.0.8-21.fc43 fedora 95.3 KiB coreutils x86_64 9.7-5.fc43 fedora 5.4 MiB cpio x86_64 2.15-6.fc43 fedora 1.1 MiB diffutils x86_64 3.12-3.fc43 fedora 1.6 MiB fedora-release-common noarch 44-0.2 fedora 20.4 KiB findutils x86_64 1:4.10.0-6.fc43 fedora 1.8 MiB gawk x86_64 5.3.2-2.fc43 fedora 1.8 MiB glibc-minimal-langpack x86_64 2.42.9000-4.fc44 fedora 0.0 B grep x86_64 3.12-2.fc43 fedora 1.0 MiB gzip x86_64 1.14-1.fc44 fedora 397.8 KiB info x86_64 7.2-6.fc43 fedora 353.9 KiB patch x86_64 2.8-2.fc43 fedora 222.8 KiB redhat-rpm-config noarch 343-13.fc44 fedora 183.2 KiB rpm-build x86_64 5.99.92-1.fc44 fedora 285.5 KiB sed x86_64 4.9-5.fc43 fedora 857.3 KiB shadow-utils x86_64 2:4.18.0-3.fc43 fedora 3.9 MiB tar x86_64 2:1.35-6.fc43 fedora 2.9 MiB unzip x86_64 6.0-68.fc44 fedora 390.3 KiB util-linux x86_64 2.41.1-16.fc44 fedora 3.5 MiB which x86_64 2.23-3.fc43 fedora 83.5 KiB xz x86_64 1:5.8.1-2.fc43 fedora 1.3 MiB Installing dependencies: add-determinism x86_64 0.6.0-2.fc43 fedora 2.4 MiB alternatives x86_64 1.33-2.fc43 fedora 62.2 KiB ansible-srpm-macros noarch 1-18.1.fc43 fedora 35.7 KiB audit-libs x86_64 4.1.1-2.fc44 fedora 378.9 KiB binutils x86_64 2.45-3.fc44 fedora 26.5 MiB build-reproducibility-srpm-macros noarch 0.6.0-2.fc43 fedora 735.0 B bzip2-libs x86_64 1.0.8-21.fc43 fedora 80.6 KiB ca-certificates noarch 2025.2.80_v9.0.304-2.fc44 fedora 2.7 MiB coreutils-common x86_64 9.7-5.fc43 fedora 11.3 MiB crypto-policies noarch 20250714-4.gitcd6043a.fc44 fedora 146.9 KiB curl x86_64 8.16.0~rc3-1.fc44 fedora 475.3 KiB cyrus-sasl-lib x86_64 2.1.28-33.fc44 fedora 2.3 MiB debugedit x86_64 5.2-3.fc44 fedora 214.0 KiB dwz x86_64 0.16-2.fc43 fedora 287.1 KiB ed x86_64 1.22.2-1.fc44 fedora 148.1 KiB efi-srpm-macros noarch 6-4.fc43 fedora 40.1 KiB elfutils x86_64 0.193-3.fc43 fedora 2.9 MiB elfutils-debuginfod-client x86_64 0.193-3.fc43 fedora 83.9 KiB elfutils-default-yama-scope noarch 0.193-3.fc43 fedora 1.8 KiB elfutils-libelf x86_64 0.193-3.fc43 fedora 1.2 MiB elfutils-libs x86_64 0.193-3.fc43 fedora 683.4 KiB fedora-gpg-keys noarch 44-0.1 fedora 131.2 KiB fedora-release noarch 44-0.2 fedora 0.0 B fedora-release-identity-basic noarch 44-0.2 fedora 664.0 B fedora-repos noarch 44-0.1 fedora 4.9 KiB fedora-repos-rawhide noarch 44-0.1 fedora 2.2 KiB file x86_64 5.46-7.fc44 fedora 100.2 KiB file-libs x86_64 5.46-7.fc44 fedora 11.9 MiB filesystem x86_64 3.18-50.fc43 fedora 112.0 B filesystem-srpm-macros noarch 3.18-50.fc43 fedora 38.2 KiB fonts-srpm-macros noarch 1:2.0.5-23.fc43 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-3.fc43 fedora 38.9 KiB fpc-srpm-macros noarch 1.3-15.fc43 fedora 144.0 B gap-srpm-macros noarch 1-1.fc44 fedora 2.0 KiB gdb-minimal x86_64 16.3-5.fc44 fedora 13.3 MiB gdbm-libs x86_64 1:1.23-10.fc43 fedora 129.9 KiB ghc-srpm-macros noarch 1.9.2-3.fc43 fedora 779.0 B glibc x86_64 2.42.9000-4.fc44 fedora 6.7 MiB glibc-common x86_64 2.42.9000-4.fc44 fedora 1.0 MiB glibc-gconv-extra x86_64 2.42.9000-4.fc44 fedora 7.2 MiB gmp x86_64 1:6.3.0-4.fc44 fedora 815.3 KiB gnat-srpm-macros noarch 6-8.fc43 fedora 1.0 KiB gnupg2 x86_64 2.4.8-4.fc43 fedora 6.5 MiB gnupg2-dirmngr x86_64 2.4.8-4.fc43 fedora 618.4 KiB gnupg2-gpg-agent x86_64 2.4.8-4.fc43 fedora 671.4 KiB gnupg2-gpgconf x86_64 2.4.8-4.fc43 fedora 250.0 KiB gnupg2-keyboxd x86_64 2.4.8-4.fc43 fedora 201.4 KiB gnupg2-verify x86_64 2.4.8-4.fc43 fedora 348.5 KiB gnutls x86_64 3.8.10-3.fc43 fedora 3.8 MiB go-srpm-macros noarch 3.8.0-1.fc44 fedora 61.9 KiB gpgverify noarch 2.2-3.fc43 fedora 8.7 KiB ima-evm-utils-libs x86_64 1.6.2-6.fc43 fedora 60.7 KiB jansson x86_64 2.14-3.fc43 fedora 89.1 KiB java-srpm-macros noarch 1-7.fc43 fedora 870.0 B json-c x86_64 0.18-7.fc43 fedora 82.7 KiB kernel-srpm-macros noarch 1.0-27.fc43 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-6.fc43 fedora 54.3 KiB krb5-libs x86_64 1.21.3-7.fc43 fedora 2.3 MiB libacl x86_64 2.3.2-4.fc43 fedora 35.9 KiB libarchive x86_64 3.8.1-3.fc43 fedora 951.1 KiB libassuan x86_64 2.5.7-4.fc43 fedora 163.8 KiB libattr x86_64 2.5.2-6.fc43 fedora 24.4 KiB libblkid x86_64 2.41.1-16.fc44 fedora 262.4 KiB libbrotli x86_64 1.1.0-9.fc44 fedora 833.3 KiB libcap x86_64 2.76-3.fc44 fedora 209.1 KiB libcap-ng x86_64 0.8.5-7.fc44 fedora 68.9 KiB libcom_err x86_64 1.47.3-2.fc43 fedora 63.1 KiB libcurl x86_64 8.16.0~rc3-1.fc44 fedora 919.6 KiB libeconf x86_64 0.7.9-2.fc43 fedora 64.9 KiB libevent x86_64 2.1.12-16.fc43 fedora 883.1 KiB libfdisk x86_64 2.41.1-16.fc44 fedora 380.4 KiB libffi x86_64 3.5.2-1.fc44 fedora 83.8 KiB libfsverity x86_64 1.6-3.fc43 fedora 28.5 KiB libgcc x86_64 15.2.1-1.fc44.1 fedora 266.6 KiB libgcrypt x86_64 1.11.1-2.fc43 fedora 1.6 MiB libgomp x86_64 15.2.1-1.fc44.1 fedora 541.1 KiB libgpg-error x86_64 1.55-2.fc43 fedora 915.3 KiB libidn2 x86_64 2.3.8-2.fc43 fedora 552.5 KiB libksba x86_64 1.6.7-4.fc43 fedora 398.5 KiB liblastlog2 x86_64 2.41.1-16.fc44 fedora 33.9 KiB libmount x86_64 2.41.1-16.fc44 fedora 372.7 KiB libnghttp2 x86_64 1.67.0-1.fc44 fedora 162.3 KiB libpkgconf x86_64 2.3.0-3.fc43 fedora 78.1 KiB libpsl x86_64 0.21.5-6.fc43 fedora 76.4 KiB libselinux x86_64 3.9-4.fc44 fedora 193.1 KiB libsemanage x86_64 3.9-3.fc44 fedora 308.5 KiB libsepol x86_64 3.9-2.fc43 fedora 822.0 KiB libsmartcols x86_64 2.41.1-16.fc44 fedora 180.5 KiB libssh x86_64 0.11.2-2.fc43 fedora 566.7 KiB libssh-config noarch 0.11.2-2.fc43 fedora 277.0 B libstdc++ x86_64 15.2.1-1.fc44.1 fedora 2.8 MiB libtasn1 x86_64 4.20.0-2.fc43 fedora 176.3 KiB libtool-ltdl x86_64 2.5.4-7.fc43 fedora 70.1 KiB libunistring x86_64 1.1-10.fc43 fedora 1.7 MiB libusb1 x86_64 1.0.29-4.fc44 fedora 171.3 KiB libuuid x86_64 2.41.1-16.fc44 fedora 37.4 KiB libverto x86_64 0.3.2-11.fc43 fedora 25.4 KiB libxcrypt x86_64 4.4.38-8.fc43 fedora 284.5 KiB libxml2 x86_64 2.12.10-4.fc44 fedora 1.7 MiB libzstd x86_64 1.5.7-2.fc43 fedora 799.9 KiB lua-libs x86_64 5.4.8-2.fc43 fedora 280.8 KiB lua-srpm-macros noarch 1-16.fc43 fedora 1.3 KiB lz4-libs x86_64 1.10.0-3.fc43 fedora 161.4 KiB mpfr x86_64 4.2.2-2.fc43 fedora 832.8 KiB ncurses-base noarch 6.5-7.20250614.fc43 fedora 328.1 KiB ncurses-libs x86_64 6.5-7.20250614.fc43 fedora 946.3 KiB nettle x86_64 3.10.1-2.fc43 fedora 790.6 KiB npth x86_64 1.8-3.fc43 fedora 49.6 KiB ocaml-srpm-macros noarch 11-2.fc43 fedora 1.9 KiB openblas-srpm-macros noarch 2-20.fc43 fedora 112.0 B openldap x86_64 2.6.10-4.fc44 fedora 659.8 KiB openssl-libs x86_64 1:3.5.1-3.fc44 fedora 9.2 MiB p11-kit x86_64 0.25.5-10.fc44 fedora 2.2 MiB p11-kit-trust x86_64 0.25.5-10.fc44 fedora 395.5 KiB package-notes-srpm-macros noarch 0.5-14.fc43 fedora 1.6 KiB pam-libs x86_64 1.7.1-3.fc43 fedora 126.8 KiB pcre2 x86_64 10.46-1.fc44 fedora 697.7 KiB pcre2-syntax noarch 10.46-1.fc44 fedora 275.3 KiB perl-srpm-macros noarch 1-60.fc43 fedora 861.0 B pkgconf x86_64 2.3.0-3.fc43 fedora 88.5 KiB pkgconf-m4 noarch 2.3.0-3.fc43 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-3.fc43 fedora 989.0 B popt x86_64 1.19-9.fc43 fedora 132.8 KiB publicsuffix-list-dafsa noarch 20250616-2.fc43 fedora 69.1 KiB pyproject-srpm-macros noarch 1.18.4-1.fc44 fedora 1.9 KiB python-srpm-macros noarch 3.14-7.fc44 fedora 51.5 KiB qt5-srpm-macros noarch 5.15.17-2.fc43 fedora 500.0 B qt6-srpm-macros noarch 6.9.2-1.fc44 fedora 464.0 B readline x86_64 8.3-2.fc43 fedora 511.7 KiB rpm x86_64 5.99.92-1.fc44 fedora 3.0 MiB rpm-build-libs x86_64 5.99.92-1.fc44 fedora 272.4 KiB rpm-libs x86_64 5.99.92-1.fc44 fedora 933.7 KiB rpm-sequoia x86_64 1.9.0-2.fc43 fedora 2.5 MiB rpm-sign-libs x86_64 5.99.92-1.fc44 fedora 39.7 KiB rust-srpm-macros noarch 26.4-1.fc44 fedora 4.8 KiB setup noarch 2.15.0-26.fc43 fedora 725.0 KiB sqlite-libs x86_64 3.50.2-2.fc43 fedora 1.5 MiB systemd-libs x86_64 258~rc4-1.fc44 fedora 2.3 MiB systemd-standalone-sysusers x86_64 258~rc4-1.fc44 fedora 293.5 KiB tpm2-tss x86_64 4.1.3-8.fc43 fedora 1.6 MiB tree-sitter-srpm-macros noarch 0.4.2-1.fc43 fedora 8.3 KiB util-linux-core x86_64 2.41.1-16.fc44 fedora 1.5 MiB xxhash-libs x86_64 0.8.3-3.fc43 fedora 90.2 KiB xz-libs x86_64 1:5.8.1-2.fc43 fedora 217.8 KiB zig-srpm-macros noarch 1-5.fc43 fedora 1.1 KiB zip x86_64 3.0-44.fc43 fedora 694.5 KiB zlib-ng-compat x86_64 2.2.5-1.fc43 fedora 137.6 KiB zstd x86_64 1.5.7-2.fc43 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 170 packages Total size of inbound packages is 59 MiB. Need to download 59 MiB. After this operation, 198 MiB extra will be used (install 198 MiB, remove 0 B). [ 1/170] bzip2-0:1.0.8-21.fc43.x86_64 100% | 138.4 KiB/s | 51.6 KiB | 00m00s [ 2/170] bash-0:5.3.0-2.fc43.x86_64 100% | 3.3 MiB/s | 1.9 MiB | 00m01s [ 3/170] cpio-0:2.15-6.fc43.x86_64 100% | 1.3 MiB/s | 293.1 KiB | 00m00s [ 4/170] coreutils-0:9.7-5.fc43.x86_64 100% | 1.9 MiB/s | 1.1 MiB | 00m01s [ 5/170] diffutils-0:3.12-3.fc43.x86_6 100% | 5.1 MiB/s | 392.3 KiB | 00m00s [ 6/170] fedora-release-common-0:44-0. 100% | 357.6 KiB/s | 25.0 KiB | 00m00s [ 7/170] findutils-1:4.10.0-6.fc43.x86 100% | 3.8 MiB/s | 550.0 KiB | 00m00s [ 8/170] glibc-minimal-langpack-0:2.42 100% | 304.9 KiB/s | 45.1 KiB | 00m00s [ 9/170] grep-0:3.12-2.fc43.x86_64 100% | 1.2 MiB/s | 299.1 KiB | 00m00s [ 10/170] gzip-0:1.14-1.fc44.x86_64 100% | 950.1 KiB/s | 177.7 KiB | 00m00s [ 11/170] info-0:7.2-6.fc43.x86_64 100% | 1.0 MiB/s | 182.9 KiB | 00m00s [ 12/170] patch-0:2.8-2.fc43.x86_64 100% | 1.5 MiB/s | 113.8 KiB | 00m00s [ 13/170] redhat-rpm-config-0:343-13.fc 100% | 1.3 MiB/s | 79.4 KiB | 00m00s [ 14/170] rpm-build-0:5.99.92-1.fc44.x8 100% | 2.6 MiB/s | 135.6 KiB | 00m00s [ 15/170] sed-0:4.9-5.fc43.x86_64 100% | 3.6 MiB/s | 317.1 KiB | 00m00s [ 16/170] shadow-utils-2:4.18.0-3.fc43. 100% | 3.1 MiB/s | 1.3 MiB | 00m00s [ 17/170] tar-2:1.35-6.fc43.x86_64 100% | 2.3 MiB/s | 856.4 KiB | 00m00s [ 18/170] unzip-0:6.0-68.fc44.x86_64 100% | 566.2 KiB/s | 184.6 KiB | 00m00s [ 19/170] which-0:2.23-3.fc43.x86_64 100% | 652.1 KiB/s | 41.7 KiB | 00m00s [ 20/170] xz-1:5.8.1-2.fc43.x86_64 100% | 4.9 MiB/s | 572.5 KiB | 00m00s [ 21/170] gawk-0:5.3.2-2.fc43.x86_64 100% | 3.6 MiB/s | 1.1 MiB | 00m00s [ 22/170] filesystem-0:3.18-50.fc43.x86 100% | 3.3 MiB/s | 1.3 MiB | 00m00s [ 23/170] util-linux-0:2.41.1-16.fc44.x 100% | 2.4 MiB/s | 1.2 MiB | 00m01s [ 24/170] ncurses-libs-0:6.5-7.20250614 100% | 2.5 MiB/s | 332.7 KiB | 00m00s [ 25/170] bzip2-libs-0:1.0.8-21.fc43.x8 100% | 234.0 KiB/s | 43.1 KiB | 00m00s [ 26/170] coreutils-common-0:9.7-5.fc43 100% | 9.7 MiB/s | 2.1 MiB | 00m00s [ 27/170] 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595.8 KiB | 00m00s [130/170] libgpg-error-0:1.55-2.fc43.x8 100% | 5.7 MiB/s | 244.3 KiB | 00m00s [131/170] npth-0:1.8-3.fc43.x86_64 100% | 641.4 KiB/s | 25.7 KiB | 00m00s [132/170] tpm2-tss-0:4.1.3-8.fc43.x86_6 100% | 4.2 MiB/s | 425.9 KiB | 00m00s [133/170] gnutls-0:3.8.10-3.fc43.x86_64 100% | 7.7 MiB/s | 1.4 MiB | 00m00s [134/170] libksba-0:1.6.7-4.fc43.x86_64 100% | 922.1 KiB/s | 160.4 KiB | 00m00s [135/170] openldap-0:2.6.10-4.fc44.x86_ 100% | 2.5 MiB/s | 259.5 KiB | 00m00s [136/170] libusb1-0:1.0.29-4.fc44.x86_6 100% | 2.9 MiB/s | 79.9 KiB | 00m00s [137/170] libidn2-0:2.3.8-2.fc43.x86_64 100% | 3.8 MiB/s | 174.9 KiB | 00m00s [138/170] libtasn1-0:4.20.0-2.fc43.x86_ 100% | 1.6 MiB/s | 74.5 KiB | 00m00s [139/170] libunistring-0:1.1-10.fc43.x8 100% | 6.0 MiB/s | 542.9 KiB | 00m00s [140/170] nettle-0:3.10.1-2.fc43.x86_64 100% | 4.8 MiB/s | 424.2 KiB | 00m00s [141/170] p11-kit-0:0.25.5-10.fc44.x86_ 100% | 5.5 MiB/s | 488.4 KiB | 00m00s [142/170] cyrus-sasl-lib-0:2.1.28-33.fc 100% | 12.2 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| 422.9 KiB/s | 14.0 KiB | 00m00s [156/170] systemd-standalone-sysusers-0 100% | 3.0 MiB/s | 143.7 KiB | 00m00s [157/170] xxhash-libs-0:0.8.3-3.fc43.x8 100% | 1.1 MiB/s | 38.5 KiB | 00m00s [158/170] fedora-release-identity-basic 100% | 368.0 KiB/s | 14.7 KiB | 00m00s [159/170] libcurl-0:8.16.0~rc3-1.fc44.x 100% | 10.3 MiB/s | 409.8 KiB | 00m00s [160/170] gdb-minimal-0:16.3-5.fc44.x86 100% | 42.0 MiB/s | 4.4 MiB | 00m00s [161/170] libbrotli-0:1.1.0-9.fc44.x86_ 100% | 10.0 MiB/s | 339.1 KiB | 00m00s [162/170] libnghttp2-0:1.67.0-1.fc44.x8 100% | 2.7 MiB/s | 73.2 KiB | 00m00s [163/170] krb5-libs-0:1.21.3-7.fc43.x86 100% | 12.1 MiB/s | 758.9 KiB | 00m00s [164/170] libpsl-0:0.21.5-6.fc43.x86_64 100% | 1.3 MiB/s | 65.0 KiB | 00m00s [165/170] libssh-0:0.11.2-2.fc43.x86_64 100% | 4.9 MiB/s | 232.7 KiB | 00m00s [166/170] keyutils-libs-0:1.6.3-6.fc43. 100% | 382.3 KiB/s | 31.4 KiB | 00m00s [167/170] libcom_err-0:1.47.3-2.fc43.x8 100% | 304.5 KiB/s | 26.8 KiB | 00m00s [168/170] libverto-0:0.3.2-11.fc43.x86_ 100% | 237.6 KiB/s | 20.7 KiB | 00m00s [169/170] libssh-config-0:0.11.2-2.fc43 100% | 192.4 KiB/s | 8.9 KiB | 00m00s [170/170] publicsuffix-list-dafsa-0:202 100% | 664.6 KiB/s | 59.2 KiB | 00m00s -------------------------------------------------------------------------------- [170/170] Total 100% | 11.9 MiB/s | 58.9 MiB | 00m05s Running transaction Importing OpenPGP key 0x6D9F90A6: UserID : "Fedora (44) " Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. Importing OpenPGP key 0x6D9F90A6: UserID : "Fedora (44) " Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. Importing OpenPGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. Importing OpenPGP key 0xF577861E: UserID : "Fedora (45) " Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary The key was successfully imported. [ 1/172] Verify package files 100% | 682.0 B/s | 170.0 B | 00m00s [ 2/172] Prepare transaction 100% | 1.8 KiB/s | 170.0 B | 00m00s [ 3/172] Installing libgcc-0:15.2.1-1. 100% | 131.0 MiB/s | 268.3 KiB | 00m00s [ 4/172] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 5/172] Installing publicsuffix-list- 100% | 68.2 MiB/s | 69.8 KiB | 00m00s [ 6/172] Installing fedora-release-ide 100% | 898.4 KiB/s | 920.0 B | 00m00s [ 7/172] Installing fedora-gpg-keys-0: 100% | 19.4 MiB/s | 179.0 KiB | 00m00s [ 8/172] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 9/172] Installing fedora-repos-0:44- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/172] Installing fedora-release-com 100% | 6.0 MiB/s | 24.8 KiB | 00m00s [ 11/172] Installing fedora-release-0:4 100% | 7.1 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 12/172] Installing setup-0:2.15.0-26. 100% | 39.6 MiB/s | 730.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 13/172] Installing filesystem-0:3.18- 100% | 1.4 MiB/s | 212.8 KiB | 00m00s [ 14/172] Installing pkgconf-m4-0:2.3.0 100% | 14.5 MiB/s | 14.8 KiB | 00m00s [ 15/172] Installing pcre2-syntax-0:10. 100% | 135.6 MiB/s | 277.8 KiB | 00m00s [ 16/172] Installing ncurses-base-0:6.5 100% | 26.6 MiB/s | 353.5 KiB | 00m00s [ 17/172] Installing bash-0:5.3.0-2.fc4 100% | 165.3 MiB/s | 8.4 MiB | 00m00s [ 18/172] Installing glibc-common-0:2.4 100% | 40.8 MiB/s | 1.0 MiB | 00m00s [ 19/172] Installing glibc-gconv-extra- 100% | 121.8 MiB/s | 7.3 MiB | 00m00s [ 20/172] Installing glibc-0:2.42.9000- 100% | 111.6 MiB/s | 6.7 MiB | 00m00s [ 21/172] Installing ncurses-libs-0:6.5 100% | 186.1 MiB/s | 952.8 KiB | 00m00s [ 22/172] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 23/172] Installing zlib-ng-compat-0:2 100% | 33.8 MiB/s | 138.4 KiB | 00m00s [ 24/172] Installing bzip2-libs-0:1.0.8 100% | 79.8 MiB/s | 81.7 KiB | 00m00s [ 25/172] Installing libgpg-error-0:1.5 100% | 52.9 MiB/s | 921.1 KiB | 00m00s [ 26/172] Installing libstdc++-0:15.2.1 100% | 167.3 MiB/s | 2.8 MiB | 00m00s [ 27/172] Installing xz-libs-1:5.8.1-2. 100% | 106.9 MiB/s | 218.9 KiB | 00m00s [ 28/172] Installing libassuan-0:2.5.7- 100% | 161.7 MiB/s | 165.6 KiB | 00m00s [ 29/172] Installing libgcrypt-0:1.11.1 100% | 175.0 MiB/s | 1.6 MiB | 00m00s [ 30/172] Installing readline-0:8.3-2.f 100% | 250.9 MiB/s | 513.9 KiB | 00m00s [ 31/172] Installing gmp-1:6.3.0-4.fc44 100% | 133.1 MiB/s | 817.5 KiB | 00m00s [ 32/172] Installing libuuid-0:2.41.1-1 100% | 37.6 MiB/s | 38.5 KiB | 00m00s [ 33/172] Installing popt-0:1.19-9.fc43 100% | 34.0 MiB/s | 139.4 KiB | 00m00s [ 34/172] Installing npth-0:1.8-3.fc43. 100% | 49.5 MiB/s | 50.7 KiB | 00m00s [ 35/172] Installing libblkid-0:2.41.1- 100% | 128.7 MiB/s | 263.5 KiB | 00m00s [ 36/172] Installing libxcrypt-0:4.4.38 100% | 56.1 MiB/s | 287.2 KiB | 00m00s [ 37/172] Installing libzstd-0:1.5.7-2. 100% | 260.8 MiB/s | 801.1 KiB | 00m00s [ 38/172] Installing elfutils-libelf-0: 100% | 145.8 MiB/s | 1.2 MiB | 00m00s [ 39/172] Installing sqlite-libs-0:3.50 100% | 168.5 MiB/s | 1.5 MiB | 00m00s [ 40/172] Installing gnupg2-gpgconf-0:2 100% | 18.9 MiB/s | 252.0 KiB | 00m00s [ 41/172] Installing libattr-0:2.5.2-6. 100% | 24.8 MiB/s | 25.4 KiB | 00m00s [ 42/172] Installing libacl-0:2.3.2-4.f 100% | 35.9 MiB/s | 36.8 KiB | 00m00s [ 43/172] Installing libtasn1-0:4.20.0- 100% | 173.9 MiB/s | 178.1 KiB | 00m00s [ 44/172] Installing libunistring-0:1.1 100% | 172.7 MiB/s | 1.7 MiB | 00m00s [ 45/172] Installing libidn2-0:2.3.8-2. 100% | 22.7 MiB/s | 558.7 KiB | 00m00s [ 46/172] Installing crypto-policies-0: 100% | 15.3 MiB/s | 172.0 KiB | 00m00s [ 47/172] Installing dwz-0:0.16-2.fc43. 100% | 16.6 MiB/s | 288.5 KiB | 00m00s [ 48/172] Installing gnupg2-verify-0:2. 100% | 24.4 MiB/s | 349.9 KiB | 00m00s [ 49/172] Installing mpfr-0:4.2.2-2.fc4 100% | 135.8 MiB/s | 834.4 KiB | 00m00s [ 50/172] Installing gawk-0:5.3.2-2.fc4 100% | 67.3 MiB/s | 1.8 MiB | 00m00s [ 51/172] Installing libksba-0:1.6.7-4. 100% | 195.8 MiB/s | 401.1 KiB | 00m00s [ 52/172] Installing unzip-0:6.0-68.fc4 100% | 16.0 MiB/s | 393.8 KiB | 00m00s [ 53/172] Installing file-libs-0:5.46-7 100% | 282.3 MiB/s | 11.9 MiB | 00m00s [ 54/172] Installing file-0:5.46-7.fc44 100% | 7.6 MiB/s | 101.7 KiB | 00m00s [ 55/172] Installing pcre2-0:10.46-1.fc 100% | 227.6 MiB/s | 699.1 KiB | 00m00s [ 56/172] Installing grep-0:3.12-2.fc43 100% | 45.6 MiB/s | 1.0 MiB | 00m00s [ 57/172] Installing xz-1:5.8.1-2.fc43. 100% | 47.6 MiB/s | 1.3 MiB | 00m00s [ 58/172] Installing libeconf-0:0.7.9-2 100% | 65.0 MiB/s | 66.5 KiB | 00m00s [ 59/172] Installing libcap-ng-0:0.8.5- 100% | 69.2 MiB/s | 70.8 KiB | 00m00s [ 60/172] Installing audit-libs-0:4.1.1 100% | 124.2 MiB/s | 381.5 KiB | 00m00s [ 61/172] Installing pam-libs-0:1.7.1-3 100% | 63.0 MiB/s | 129.0 KiB | 00m00s [ 62/172] Installing libcap-0:2.76-3.fc 100% | 12.3 MiB/s | 214.3 KiB | 00m00s [ 63/172] Installing systemd-libs-0:258 100% | 194.7 MiB/s | 2.3 MiB | 00m00s [ 64/172] Installing libsmartcols-0:2.4 100% | 177.3 MiB/s | 181.6 KiB | 00m00s [ 65/172] Installing libsepol-0:3.9-2.f 100% | 114.8 MiB/s | 822.9 KiB | 00m00s [ 66/172] Installing libselinux-0:3.9-4 100% | 94.9 MiB/s | 194.4 KiB | 00m00s [ 67/172] Installing findutils-1:4.10.0 100% | 77.4 MiB/s | 1.9 MiB | 00m00s [ 68/172] Installing sed-0:4.9-5.fc43.x 100% | 33.8 MiB/s | 865.5 KiB | 00m00s [ 69/172] Installing libmount-0:2.41.1- 100% | 182.5 MiB/s | 373.7 KiB | 00m00s [ 70/172] Installing lz4-libs-0:1.10.0- 100% | 158.6 MiB/s | 162.5 KiB | 00m00s [ 71/172] Installing lua-libs-0:5.4.8-2 100% | 137.6 MiB/s | 281.9 KiB | 00m00s [ 72/172] Installing json-c-0:0.18-7.fc 100% | 82.0 MiB/s | 84.0 KiB | 00m00s [ 73/172] Installing libffi-0:3.5.2-1.f 100% | 83.2 MiB/s | 85.2 KiB | 00m00s [ 74/172] Installing p11-kit-0:0.25.5-1 100% | 68.3 MiB/s | 2.2 MiB | 00m00s [ 75/172] Installing alternatives-0:1.3 100% | 5.2 MiB/s | 63.8 KiB | 00m00s [ 76/172] Installing p11-kit-trust-0:0. 100% | 12.9 MiB/s | 397.1 KiB | 00m00s [ 77/172] Installing zstd-0:1.5.7-2.fc4 100% | 74.3 MiB/s | 1.7 MiB | 00m00s [ 78/172] Installing util-linux-core-0: 100% | 54.8 MiB/s | 1.5 MiB | 00m00s [ 79/172] Installing tar-2:1.35-6.fc43. 100% | 102.0 MiB/s | 3.0 MiB | 00m00s [ 80/172] Installing libsemanage-0:3.9- 100% | 151.5 MiB/s | 310.2 KiB | 00m00s [ 81/172] Installing systemd-standalone 100% | 22.1 MiB/s | 294.1 KiB | 00m00s [ 82/172] Installing libusb1-0:1.0.29-4 100% | 42.2 MiB/s | 172.9 KiB | 00m00s [ 83/172] Installing zip-0:3.0-44.fc43. 100% | 37.9 MiB/s | 698.4 KiB | 00m00s [ 84/172] Installing gnupg2-keyboxd-0:2 100% | 12.4 MiB/s | 202.7 KiB | 00m00s [ 85/172] Installing libpsl-0:0.21.5-6. 100% | 75.7 MiB/s | 77.5 KiB | 00m00s [ 86/172] Installing liblastlog2-0:2.41 100% | 2.0 MiB/s | 36.0 KiB | 00m00s [ 87/172] Installing libfdisk-0:2.41.1- 100% | 186.3 MiB/s | 381.5 KiB | 00m00s [ 88/172] Installing nettle-0:3.10.1-2. 100% | 193.8 MiB/s | 793.7 KiB | 00m00s [ 89/172] Installing gnutls-0:3.8.10-3. 100% | 174.5 MiB/s | 3.8 MiB | 00m00s [ 90/172] Installing libxml2-0:2.12.10- 100% | 77.5 MiB/s | 1.7 MiB | 00m00s [ 91/172] Installing bzip2-0:1.0.8-21.f 100% | 5.4 MiB/s | 99.8 KiB | 00m00s [ 92/172] Installing add-determinism-0: 100% | 101.8 MiB/s | 2.4 MiB | 00m00s [ 93/172] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 94/172] Installing cpio-0:2.15-6.fc43 100% | 52.4 MiB/s | 1.1 MiB | 00m00s [ 95/172] Installing diffutils-0:3.12-3 100% | 67.9 MiB/s | 1.6 MiB | 00m00s [ 96/172] Installing ed-0:1.22.2-1.fc44 100% | 11.3 MiB/s | 150.4 KiB | 00m00s [ 97/172] Installing patch-0:2.8-2.fc43 100% | 13.7 MiB/s | 224.3 KiB | 00m00s [ 98/172] Installing libgomp-0:15.2.1-1 100% | 176.6 MiB/s | 542.5 KiB | 00m00s [ 99/172] Installing libtool-ltdl-0:2.5 100% | 13.9 MiB/s | 71.2 KiB | 00m00s [100/172] Installing gdbm-libs-1:1.23-1 100% | 128.5 MiB/s | 131.6 KiB | 00m00s [101/172] Installing cyrus-sasl-lib-0:2 100% | 95.8 MiB/s | 2.3 MiB | 00m00s [102/172] Installing jansson-0:2.14-3.f 100% | 88.3 MiB/s | 90.5 KiB | 00m00s [103/172] Installing libpkgconf-0:2.3.0 100% | 77.4 MiB/s | 79.2 KiB | 00m00s [104/172] Installing pkgconf-0:2.3.0-3. 100% | 5.6 MiB/s | 91.0 KiB | 00m00s [105/172] Installing pkgconf-pkg-config 100% | 161.2 KiB/s | 1.8 KiB | 00m00s [106/172] Installing xxhash-libs-0:0.8. 100% | 89.4 MiB/s | 91.6 KiB | 00m00s [107/172] Installing libbrotli-0:1.1.0- 100% | 204.0 MiB/s | 835.6 KiB | 00m00s [108/172] Installing libnghttp2-0:1.67. 100% | 159.5 MiB/s | 163.4 KiB | 00m00s [109/172] Installing keyutils-libs-0:1. 100% | 10.9 MiB/s | 55.7 KiB | 00m00s [110/172] Installing libcom_err-0:1.47. 100% | 62.7 MiB/s | 64.2 KiB | 00m00s [111/172] Installing libverto-0:0.3.2-1 100% | 26.6 MiB/s | 27.2 KiB | 00m00s [112/172] Installing filesystem-srpm-ma 100% | 38.0 MiB/s | 38.9 KiB | 00m00s [113/172] Installing elfutils-default-y 100% | 136.2 KiB/s | 2.0 KiB | 00m00s [114/172] Installing elfutils-libs-0:0. 100% | 95.6 MiB/s | 685.2 KiB | 00m00s [115/172] Installing rust-srpm-macros-0 100% | 5.4 MiB/s | 5.6 KiB | 00m00s [116/172] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 740.0 B | 00m00s [117/172] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [118/172] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [119/172] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [120/172] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [121/172] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [122/172] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [123/172] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [124/172] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [125/172] Installing gap-srpm-macros-0: 100% | 2.5 MiB/s | 2.6 KiB | 00m00s [126/172] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [127/172] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [128/172] Installing coreutils-common-0 100% | 173.7 MiB/s | 11.3 MiB | 00m00s [129/172] Installing openssl-libs-1:3.5 100% | 204.9 MiB/s | 9.2 MiB | 00m00s [130/172] Installing coreutils-0:9.7-5. 100% | 78.9 MiB/s | 5.4 MiB | 00m00s [131/172] Installing ca-certificates-0: 100% | 1.2 MiB/s | 2.5 MiB | 00m02s [132/172] Installing libarchive-0:3.8.1 100% | 155.1 MiB/s | 953.1 KiB | 00m00s [133/172] Installing krb5-libs-0:1.21.3 100% | 69.4 MiB/s | 2.3 MiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.x86_64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.x86_64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [134/172] Installing tpm2-tss-0:4.1.3-8 100% | 131.0 MiB/s | 1.6 MiB | 00m00s [135/172] Installing ima-evm-utils-libs 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [136/172] Installing gnupg2-gpg-agent-0 100% | 20.0 MiB/s | 675.4 KiB | 00m00s [137/172] Installing libssh-0:0.11.2-2. 100% | 92.6 MiB/s | 568.7 KiB | 00m00s [138/172] Installing gzip-0:1.14-1.fc44 100% | 24.6 MiB/s | 403.3 KiB | 00m00s [139/172] Installing rpm-sequoia-0:1.9. 100% | 206.5 MiB/s | 2.5 MiB | 00m00s [140/172] Installing rpm-libs-0:5.99.92 100% | 130.5 MiB/s | 935.3 KiB | 00m00s [141/172] Installing libfsverity-0:1.6- 100% | 28.8 MiB/s | 29.5 KiB | 00m00s [142/172] Installing libevent-0:2.1.12- 100% | 96.2 MiB/s | 886.8 KiB | 00m00s [143/172] Installing openldap-0:2.6.10- 100% | 162.0 MiB/s | 663.6 KiB | 00m00s [144/172] Installing libcurl-0:8.16.0~r 100% | 149.8 MiB/s | 920.7 KiB | 00m00s [145/172] Installing elfutils-debuginfo 100% | 5.6 MiB/s | 86.2 KiB | 00m00s [146/172] Installing elfutils-0:0.193-3 100% | 108.1 MiB/s | 2.9 MiB | 00m00s [147/172] Installing binutils-0:2.45-3. 100% | 176.9 MiB/s | 26.5 MiB | 00m00s [148/172] Installing gdb-minimal-0:16.3 100% | 167.8 MiB/s | 13.3 MiB | 00m00s [149/172] Installing debugedit-0:5.2-3. 100% | 15.2 MiB/s | 217.3 KiB | 00m00s [150/172] Installing curl-0:8.16.0~rc3- 100% | 13.0 MiB/s | 478.1 KiB | 00m00s [151/172] Installing rpm-0:5.99.92-1.fc 100% | 42.3 MiB/s | 2.5 MiB | 00m00s [152/172] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.1 KiB | 00m00s [153/172] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [154/172] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s [155/172] Installing tree-sitter-srpm-m 100% | 9.1 MiB/s | 9.3 KiB | 00m00s [156/172] Installing zig-srpm-macros-0: 100% | 1.6 MiB/s | 1.7 KiB | 00m00s [157/172] Installing gnupg2-dirmngr-0:2 100% | 16.0 MiB/s | 621.1 KiB | 00m00s [158/172] Installing gnupg2-0:2.4.8-4.f 100% | 126.0 MiB/s | 6.6 MiB | 00m00s [159/172] Installing rpm-sign-libs-0:5. 100% | 39.6 MiB/s | 40.6 KiB | 00m00s [160/172] Installing rpm-build-libs-0:5 100% | 133.4 MiB/s | 273.2 KiB | 00m00s [161/172] Installing gpgverify-0:2.2-3. 100% | 9.2 MiB/s | 9.4 KiB | 00m00s [162/172] Installing rpm-build-0:5.99.9 100% | 18.0 MiB/s | 294.3 KiB | 00m00s [163/172] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [164/172] Installing redhat-rpm-config- 100% | 26.4 MiB/s | 189.4 KiB | 00m00s [165/172] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [166/172] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [167/172] Installing go-srpm-macros-0:3 100% | 61.6 MiB/s | 63.0 KiB | 00m00s [168/172] Installing python-srpm-macros 100% | 51.6 MiB/s | 52.8 KiB | 00m00s [169/172] Installing which-0:2.23-3.fc4 100% | 5.6 MiB/s | 85.7 KiB | 00m00s [170/172] Installing util-linux-0:2.41. 100% | 49.6 MiB/s | 3.6 MiB | 00m00s [171/172] Installing shadow-utils-2:4.1 100% | 68.4 MiB/s | 4.0 MiB | 00m00s [172/172] Installing info-0:7.2-6.fc43. 100% | 126.5 KiB/s | 354.3 KiB | 00m03s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.6.0-2.fc43.x86_64 alternatives-1.33-2.fc43.x86_64 ansible-srpm-macros-1-18.1.fc43.noarch audit-libs-4.1.1-2.fc44.x86_64 bash-5.3.0-2.fc43.x86_64 binutils-2.45-3.fc44.x86_64 build-reproducibility-srpm-macros-0.6.0-2.fc43.noarch bzip2-1.0.8-21.fc43.x86_64 bzip2-libs-1.0.8-21.fc43.x86_64 ca-certificates-2025.2.80_v9.0.304-2.fc44.noarch coreutils-9.7-5.fc43.x86_64 coreutils-common-9.7-5.fc43.x86_64 cpio-2.15-6.fc43.x86_64 crypto-policies-20250714-4.gitcd6043a.fc44.noarch curl-8.16.0~rc3-1.fc44.x86_64 cyrus-sasl-lib-2.1.28-33.fc44.x86_64 debugedit-5.2-3.fc44.x86_64 diffutils-3.12-3.fc43.x86_64 dwz-0.16-2.fc43.x86_64 ed-1.22.2-1.fc44.x86_64 efi-srpm-macros-6-4.fc43.noarch elfutils-0.193-3.fc43.x86_64 elfutils-debuginfod-client-0.193-3.fc43.x86_64 elfutils-default-yama-scope-0.193-3.fc43.noarch elfutils-libelf-0.193-3.fc43.x86_64 elfutils-libs-0.193-3.fc43.x86_64 fedora-gpg-keys-44-0.1.noarch fedora-release-44-0.2.noarch fedora-release-common-44-0.2.noarch fedora-release-identity-basic-44-0.2.noarch fedora-repos-44-0.1.noarch fedora-repos-rawhide-44-0.1.noarch file-5.46-7.fc44.x86_64 file-libs-5.46-7.fc44.x86_64 filesystem-3.18-50.fc43.x86_64 filesystem-srpm-macros-3.18-50.fc43.noarch findutils-4.10.0-6.fc43.x86_64 fonts-srpm-macros-2.0.5-23.fc43.noarch forge-srpm-macros-0.4.0-3.fc43.noarch fpc-srpm-macros-1.3-15.fc43.noarch gap-srpm-macros-1-1.fc44.noarch gawk-5.3.2-2.fc43.x86_64 gdb-minimal-16.3-5.fc44.x86_64 gdbm-libs-1.23-10.fc43.x86_64 ghc-srpm-macros-1.9.2-3.fc43.noarch glibc-2.42.9000-4.fc44.x86_64 glibc-common-2.42.9000-4.fc44.x86_64 glibc-gconv-extra-2.42.9000-4.fc44.x86_64 glibc-minimal-langpack-2.42.9000-4.fc44.x86_64 gmp-6.3.0-4.fc44.x86_64 gnat-srpm-macros-6-8.fc43.noarch gnupg2-2.4.8-4.fc43.x86_64 gnupg2-dirmngr-2.4.8-4.fc43.x86_64 gnupg2-gpg-agent-2.4.8-4.fc43.x86_64 gnupg2-gpgconf-2.4.8-4.fc43.x86_64 gnupg2-keyboxd-2.4.8-4.fc43.x86_64 gnupg2-verify-2.4.8-4.fc43.x86_64 gnutls-3.8.10-3.fc43.x86_64 go-srpm-macros-3.8.0-1.fc44.noarch gpg-pubkey-36f612dcf27f7d1a48a835e4dbfcf71c6d9f90a6-6786af3b gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98 gpg-pubkey-c6e7f081cf80e13146676e88829b606631645531-66b6dccf gpgverify-2.2-3.fc43.noarch grep-3.12-2.fc43.x86_64 gzip-1.14-1.fc44.x86_64 ima-evm-utils-libs-1.6.2-6.fc43.x86_64 info-7.2-6.fc43.x86_64 jansson-2.14-3.fc43.x86_64 java-srpm-macros-1-7.fc43.noarch json-c-0.18-7.fc43.x86_64 kernel-srpm-macros-1.0-27.fc43.noarch keyutils-libs-1.6.3-6.fc43.x86_64 krb5-libs-1.21.3-7.fc43.x86_64 libacl-2.3.2-4.fc43.x86_64 libarchive-3.8.1-3.fc43.x86_64 libassuan-2.5.7-4.fc43.x86_64 libattr-2.5.2-6.fc43.x86_64 libblkid-2.41.1-16.fc44.x86_64 libbrotli-1.1.0-9.fc44.x86_64 libcap-2.76-3.fc44.x86_64 libcap-ng-0.8.5-7.fc44.x86_64 libcom_err-1.47.3-2.fc43.x86_64 libcurl-8.16.0~rc3-1.fc44.x86_64 libeconf-0.7.9-2.fc43.x86_64 libevent-2.1.12-16.fc43.x86_64 libfdisk-2.41.1-16.fc44.x86_64 libffi-3.5.2-1.fc44.x86_64 libfsverity-1.6-3.fc43.x86_64 libgcc-15.2.1-1.fc44.1.x86_64 libgcrypt-1.11.1-2.fc43.x86_64 libgomp-15.2.1-1.fc44.1.x86_64 libgpg-error-1.55-2.fc43.x86_64 libidn2-2.3.8-2.fc43.x86_64 libksba-1.6.7-4.fc43.x86_64 liblastlog2-2.41.1-16.fc44.x86_64 libmount-2.41.1-16.fc44.x86_64 libnghttp2-1.67.0-1.fc44.x86_64 libpkgconf-2.3.0-3.fc43.x86_64 libpsl-0.21.5-6.fc43.x86_64 libselinux-3.9-4.fc44.x86_64 libsemanage-3.9-3.fc44.x86_64 libsepol-3.9-2.fc43.x86_64 libsmartcols-2.41.1-16.fc44.x86_64 libssh-0.11.2-2.fc43.x86_64 libssh-config-0.11.2-2.fc43.noarch libstdc++-15.2.1-1.fc44.1.x86_64 libtasn1-4.20.0-2.fc43.x86_64 libtool-ltdl-2.5.4-7.fc43.x86_64 libunistring-1.1-10.fc43.x86_64 libusb1-1.0.29-4.fc44.x86_64 libuuid-2.41.1-16.fc44.x86_64 libverto-0.3.2-11.fc43.x86_64 libxcrypt-4.4.38-8.fc43.x86_64 libxml2-2.12.10-4.fc44.x86_64 libzstd-1.5.7-2.fc43.x86_64 lua-libs-5.4.8-2.fc43.x86_64 lua-srpm-macros-1-16.fc43.noarch lz4-libs-1.10.0-3.fc43.x86_64 mpfr-4.2.2-2.fc43.x86_64 ncurses-base-6.5-7.20250614.fc43.noarch ncurses-libs-6.5-7.20250614.fc43.x86_64 nettle-3.10.1-2.fc43.x86_64 npth-1.8-3.fc43.x86_64 ocaml-srpm-macros-11-2.fc43.noarch openblas-srpm-macros-2-20.fc43.noarch openldap-2.6.10-4.fc44.x86_64 openssl-libs-3.5.1-3.fc44.x86_64 p11-kit-0.25.5-10.fc44.x86_64 p11-kit-trust-0.25.5-10.fc44.x86_64 package-notes-srpm-macros-0.5-14.fc43.noarch pam-libs-1.7.1-3.fc43.x86_64 patch-2.8-2.fc43.x86_64 pcre2-10.46-1.fc44.x86_64 pcre2-syntax-10.46-1.fc44.noarch perl-srpm-macros-1-60.fc43.noarch pkgconf-2.3.0-3.fc43.x86_64 pkgconf-m4-2.3.0-3.fc43.noarch pkgconf-pkg-config-2.3.0-3.fc43.x86_64 popt-1.19-9.fc43.x86_64 publicsuffix-list-dafsa-20250616-2.fc43.noarch pyproject-srpm-macros-1.18.4-1.fc44.noarch python-srpm-macros-3.14-7.fc44.noarch qt5-srpm-macros-5.15.17-2.fc43.noarch qt6-srpm-macros-6.9.2-1.fc44.noarch readline-8.3-2.fc43.x86_64 redhat-rpm-config-343-13.fc44.noarch rpm-5.99.92-1.fc44.x86_64 rpm-build-5.99.92-1.fc44.x86_64 rpm-build-libs-5.99.92-1.fc44.x86_64 rpm-libs-5.99.92-1.fc44.x86_64 rpm-sequoia-1.9.0-2.fc43.x86_64 rpm-sign-libs-5.99.92-1.fc44.x86_64 rust-srpm-macros-26.4-1.fc44.noarch sed-4.9-5.fc43.x86_64 setup-2.15.0-26.fc43.noarch shadow-utils-4.18.0-3.fc43.x86_64 sqlite-libs-3.50.2-2.fc43.x86_64 systemd-libs-258~rc4-1.fc44.x86_64 systemd-standalone-sysusers-258~rc4-1.fc44.x86_64 tar-1.35-6.fc43.x86_64 tpm2-tss-4.1.3-8.fc43.x86_64 tree-sitter-srpm-macros-0.4.2-1.fc43.noarch unzip-6.0-68.fc44.x86_64 util-linux-2.41.1-16.fc44.x86_64 util-linux-core-2.41.1-16.fc44.x86_64 which-2.23-3.fc43.x86_64 xxhash-libs-0.8.3-3.fc43.x86_64 xz-5.8.1-2.fc43.x86_64 xz-libs-5.8.1-2.fc43.x86_64 zig-srpm-macros-1-5.fc43.noarch zip-3.0-44.fc43.x86_64 zlib-ng-compat-2.2.5-1.fc43.x86_64 zstd-1.5.7-2.fc43.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1753401600 Wrote: /builddir/build/SRPMS/python-xbout-0.3.6-6.fc44.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1757333401.214824/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-3dru4nab/python-xbout/python-xbout.spec) Config(child) 0 minutes 33 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/python-xbout-0.3.6-6.fc44.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1757333401.214824/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1757333401.214824/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1757333401.214824/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-5.99.92-1.fc44.x86_64 rpm-sequoia-1.9.0-2.fc43.x86_64 dnf5-5.2.17.0-1.fc44.x86_64 dnf5-plugins-5.2.17.0-1.fc44.x86_64 Finish: chroot init Start: build phase for python-xbout-0.3.6-6.fc44.src.rpm Start: build setup for python-xbout-0.3.6-6.fc44.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1753401600 Wrote: /builddir/build/SRPMS/python-xbout-0.3.6-6.fc44.src.rpm Updating and loading repositories: Copr repository 100% | 71.4 KiB/s | 2.1 KiB | 00m00s fedora 100% | 502.4 KiB/s | 29.1 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: python3-boutdata noarch 0.3.0-5.fc44 fedora 1.2 MiB python3-devel x86_64 3.14.0~rc2-1.fc44 fedora 1.9 MiB python3-pytest noarch 8.3.5-8.fc44 fedora 21.6 MiB python3-sphinx noarch 1:8.2.3-10.fc44 fedora 12.3 MiB python3-sphinx-autodoc-typehints noarch 3.1.0-4.fc44 fedora 129.1 KiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-15.fc43 fedora 192.7 KiB blosc x86_64 1.21.6-7.fc43 fedora 126.2 KiB cairo x86_64 1.18.4-2.fc43 fedora 1.8 MiB default-fonts-core-sans noarch 4.2-5.fc43 fedora 11.9 KiB dejavu-sans-fonts noarch 2.37-26.fc43 fedora 5.5 MiB expat x86_64 2.7.1-3.fc43 fedora 294.2 KiB flexiblas x86_64 3.4.5-5.fc44 fedora 50.4 KiB flexiblas-netlib x86_64 3.4.5-5.fc44 fedora 10.9 MiB flexiblas-openblas-openmp x86_64 3.4.5-5.fc44 fedora 39.2 KiB fontconfig x86_64 2.17.0-3.fc43 fedora 765.9 KiB fonts-filesystem noarch 1:2.0.5-23.fc43 fedora 0.0 B freetype x86_64 2.13.3-3.fc43 fedora 850.2 KiB fribidi x86_64 1.0.16-3.fc43 fedora 190.3 KiB glib2 x86_64 2.85.4-1.fc44 fedora 14.7 MiB google-noto-fonts-common noarch 20250901-1.fc44 fedora 17.7 KiB google-noto-sans-vf-fonts noarch 20250901-1.fc44 fedora 1.4 MiB graphite2 x86_64 1.3.14-19.fc43 fedora 191.8 KiB harfbuzz x86_64 11.4.5-1.fc44 fedora 2.8 MiB hdf-libs x86_64 4.3.0-4.fc43 fedora 687.2 KiB hdf5 x86_64 1.14.6-6.fc43 fedora 6.4 MiB jbigkit-libs x86_64 2.1-32.fc43 fedora 113.5 KiB lcms2 x86_64 2.16-6.fc43 fedora 433.7 KiB libX11 x86_64 1.8.12-1.fc43 fedora 1.3 MiB libX11-common noarch 1.8.12-1.fc43 fedora 1.2 MiB libXau x86_64 1.0.12-3.fc43 fedora 72.9 KiB libXext x86_64 1.3.6-4.fc43 fedora 90.0 KiB libXrender x86_64 0.9.12-3.fc43 fedora 46.0 KiB libaec x86_64 1.1.4-3.fc44 fedora 90.4 KiB libgfortran x86_64 15.2.1-1.fc44.1 fedora 3.4 MiB libimagequant x86_64 4.0.3-8.fc43 fedora 690.9 KiB libjpeg-turbo x86_64 3.1.2-1.fc44 fedora 804.8 KiB liblerc x86_64 4.0.0-9.fc43 fedora 624.1 KiB libpng x86_64 2:1.6.50-2.fc43 fedora 237.7 KiB libqhull_r x86_64 1:8.0.2-7.fc43 fedora 483.3 KiB libquadmath x86_64 15.2.1-1.fc44.1 fedora 317.9 KiB libraqm x86_64 0.10.1-3.fc43 fedora 28.6 KiB libtiff x86_64 4.7.0-8.fc44 fedora 619.0 KiB libtirpc x86_64 1.3.7-0.fc44 fedora 198.9 KiB libwebp x86_64 1.6.0-2.fc43 fedora 956.6 KiB libxcb x86_64 1.17.0-6.fc43 fedora 1.1 MiB libzip x86_64 1.11.4-2.fc43 fedora 135.8 KiB lzo x86_64 2.10-15.fc43 fedora 178.9 KiB mpdecimal x86_64 4.0.1-2.fc43 fedora 217.2 KiB netcdf x86_64 4.9.3-1.fc44 fedora 2.5 MiB openblas x86_64 0.3.29-2.fc43 fedora 111.7 KiB openblas-openmp x86_64 0.3.29-2.fc43 fedora 43.7 MiB openjpeg x86_64 2.5.3-8.fc43 fedora 455.7 KiB pixman x86_64 0.46.2-2.fc43 fedora 710.3 KiB pyproject-rpm-macros noarch 1.18.4-1.fc44 fedora 114.9 KiB python-pip-wheel noarch 25.2-2.fc44 fedora 1.2 MiB python-rpm-macros noarch 3.14-7.fc44 fedora 27.6 KiB python3 x86_64 3.14.0~rc2-1.fc44 fedora 28.9 KiB python3-babel noarch 2.17.0-5.fc44 fedora 30.3 MiB python3-cairo x86_64 1.28.0-3.fc44 fedora 492.9 KiB python3-certifi noarch 2025.07.09-2.fc44 fedora 7.4 KiB python3-cftime x86_64 1.6.4-9.fc44 fedora 581.6 KiB python3-charset-normalizer noarch 3.4.3-2.fc44 fedora 355.7 KiB python3-contourpy x86_64 1.3.3-2.fc44 fedora 856.7 KiB python3-cycler noarch 0.11.0-18.fc44 fedora 37.8 KiB python3-dateutil noarch 1:2.9.0.post0-5.fc44 fedora 877.5 KiB python3-docutils noarch 0.21.2-5.fc44 fedora 5.0 MiB python3-fonttools x86_64 4.59.2-1.fc44 fedora 19.0 MiB python3-idna noarch 3.10-5.fc44 fedora 730.6 KiB python3-imagesize noarch 1.4.1-13.fc44 fedora 36.0 KiB python3-iniconfig noarch 2.1.0-2.fc44 fedora 42.4 KiB python3-jinja2 noarch 3.1.6-5.fc44 fedora 3.1 MiB python3-kiwisolver x86_64 1.4.9-2.fc44 fedora 154.0 KiB python3-libs x86_64 3.14.0~rc2-1.fc44 fedora 42.9 MiB python3-markupsafe x86_64 3.0.2-5.fc44 fedora 61.5 KiB python3-matplotlib x86_64 3.10.6-1.fc44 fedora 31.6 MiB python3-matplotlib-data-fonts x86_64 3.10.6-1.fc44 fedora 7.9 MiB python3-mpmath noarch 1.3.0-15.fc44 fedora 5.3 MiB python3-natsort noarch 8.4.0-7.fc44 fedora 264.5 KiB python3-netcdf4 x86_64 1.7.2-8.fc44 fedora 2.3 MiB python3-numpy x86_64 1:2.3.2-2.fc44 fedora 41.3 MiB python3-numpy-f2py x86_64 1:2.3.2-2.fc44 fedora 2.1 MiB python3-olefile noarch 0.47-10.fc44 fedora 346.5 KiB python3-packaging noarch 25.0-5.fc44 fedora 607.4 KiB python3-pillow x86_64 11.3.0-4.fc44 fedora 4.2 MiB python3-platformdirs noarch 4.4.0-1.fc44 fedora 182.4 KiB python3-pluggy noarch 1.6.0-3.fc44 fedora 211.0 KiB python3-pooch noarch 1.8.2-8.fc44 fedora 635.3 KiB python3-pygments noarch 2.19.1-5.fc44 fedora 11.3 MiB python3-pyparsing noarch 3.1.2-13.fc44 fedora 1.0 MiB python3-requests noarch 2.32.5-1.fc44 fedora 476.9 KiB python3-roman-numerals-py noarch 3.1.0-4.fc44 fedora 40.4 KiB python3-rpm-generators noarch 14-13.fc43 fedora 81.7 KiB python3-rpm-macros noarch 3.14-7.fc44 fedora 6.5 KiB python3-scipy x86_64 1.15.3-5.fc44 fedora 68.8 MiB python3-six noarch 1.17.0-6.fc44 fedora 118.0 KiB python3-snowballstemmer noarch 3.0.1-7.fc44 fedora 1.8 MiB python3-sphinx-theme-alabaster noarch 0.7.16-10.fc44 fedora 42.0 KiB python3-sympy noarch 1.14.0-6.fc44 fedora 84.3 MiB python3-urllib3 noarch 2.5.0-2.fc44 fedora 1.1 MiB snappy x86_64 1.2.2-2.fc43 fedora 71.8 KiB tzdata noarch 2025b-3.fc43 fedora 1.6 MiB xml-common noarch 0.6.3-67.fc43 fedora 78.4 KiB Transaction Summary: Installing: 102 packages Total size of inbound packages is 114 MiB. Need to download 114 MiB. After this operation, 518 MiB extra will be used (install 518 MiB, remove 0 B). [ 1/102] python3-sphinx-autodoc-typehi 100% | 256.5 KiB/s | 53.9 KiB | 00m00s [ 2/102] python3-boutdata-0:0.3.0-5.fc 100% | 2.3 MiB/s | 335.5 KiB | 00m00s [ 3/102] python3-pytest-0:8.3.5-8.fc44 100% | 5.1 MiB/s | 2.2 MiB | 00m00s [ 4/102] python3-sphinx-1:8.2.3-10.fc4 100% | 6.3 MiB/s | 2.9 MiB | 00m00s [ 5/102] python3-devel-0:3.14.0~rc2-1. 100% | 4.3 MiB/s | 434.8 KiB | 00m00s [ 6/102] python3-iniconfig-0:2.1.0-2.f 100% | 504.9 KiB/s | 22.7 KiB | 00m00s [ 7/102] python3-packaging-0:25.0-5.fc 100% | 3.3 MiB/s | 161.2 KiB | 00m00s [ 8/102] python3-pluggy-0:1.6.0-3.fc44 100% | 1.3 MiB/s | 61.5 KiB | 00m00s [ 9/102] python3-imagesize-0:1.4.1-13. 100% | 458.4 KiB/s | 22.0 KiB | 00m00s [ 10/102] python3-docutils-0:0.21.2-5.f 100% | 9.9 MiB/s | 1.1 MiB | 00m00s [ 11/102] python3-jinja2-0:3.1.6-5.fc44 100% | 7.7 MiB/s | 515.7 KiB | 00m00s [ 12/102] python3-babel-0:2.17.0-5.fc44 100% | 40.8 MiB/s | 6.9 MiB | 00m00s [ 13/102] python3-requests-0:2.32.5-1.f 100% | 3.0 MiB/s | 160.3 KiB | 00m00s 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python3-0:3.14.0~rc2-1.fc44.x 100% | 584.7 KiB/s | 27.5 KiB | 00m00s [ 66/102] openblas-openmp-0:0.3.29-2.fc 100% | 41.9 MiB/s | 5.4 MiB | 00m00s [ 67/102] python3-cairo-0:1.28.0-3.fc44 100% | 2.7 MiB/s | 126.1 KiB | 00m00s [ 68/102] glib2-0:2.85.4-1.fc44.x86_64 100% | 16.5 MiB/s | 3.1 MiB | 00m00s [ 69/102] fontconfig-0:2.17.0-3.fc43.x8 100% | 5.1 MiB/s | 272.2 KiB | 00m00s [ 70/102] cairo-0:1.18.4-2.fc43.x86_64 100% | 11.7 MiB/s | 729.3 KiB | 00m00s [ 71/102] libX11-0:1.8.12-1.fc43.x86_64 100% | 9.8 MiB/s | 655.6 KiB | 00m00s [ 72/102] libXext-0:1.3.6-4.fc43.x86_64 100% | 868.0 KiB/s | 39.1 KiB | 00m00s [ 73/102] libXrender-0:0.9.12-3.fc43.x8 100% | 597.2 KiB/s | 26.9 KiB | 00m00s [ 74/102] libxcb-0:1.17.0-6.fc43.x86_64 100% | 4.9 MiB/s | 237.7 KiB | 00m00s [ 75/102] lzo-0:2.10-15.fc43.x86_64 100% | 1.5 MiB/s | 69.4 KiB | 00m00s [ 76/102] pixman-0:0.46.2-2.fc43.x86_64 100% | 6.0 MiB/s | 292.5 KiB | 00m00s [ 77/102] default-fonts-core-sans-0:4.2 100% | 664.4 KiB/s | 29.9 KiB | 00m00s 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100% | 114.4 MiB/s | 5.4 MiB | 00m00s [ 89/104] Installing python3-sympy-0:1. 100% | 137.9 MiB/s | 85.2 MiB | 00m01s [ 90/104] Installing python3-six-0:1.17 100% | 58.7 MiB/s | 120.3 KiB | 00m00s [ 91/104] Installing python3-dateutil-1 100% | 124.3 MiB/s | 891.1 KiB | 00m00s [ 92/104] Installing python3-platformdi 100% | 61.5 MiB/s | 188.8 KiB | 00m00s [ 93/104] Installing python3-pooch-0:1. 100% | 45.4 MiB/s | 650.4 KiB | 00m00s [ 94/104] Installing python3-scipy-0:1. 100% | 171.2 MiB/s | 69.2 MiB | 00m00s [ 95/104] Installing python3-cairo-0:1. 100% | 161.6 MiB/s | 496.4 KiB | 00m00s [ 96/104] Installing python3-olefile-0: 100% | 56.9 MiB/s | 349.8 KiB | 00m00s [ 97/104] Installing python3-pillow-0:1 100% | 134.5 MiB/s | 4.3 MiB | 00m00s [ 98/104] Installing python3-matplotlib 100% | 168.4 MiB/s | 7.9 MiB | 00m00s [ 99/104] Installing libqhull_r-1:8.0.2 100% | 94.6 MiB/s | 484.1 KiB | 00m00s [100/104] Installing python3-matplotlib 100% | 197.9 MiB/s | 31.9 MiB | 00m00s [101/104] Installing python3-boutdata-0 100% | 48.3 MiB/s | 1.2 MiB | 00m00s [102/104] Installing python3-sphinx-aut 100% | 13.1 MiB/s | 133.9 KiB | 00m00s [103/104] Installing python3-pytest-0:8 100% | 161.4 MiB/s | 21.8 MiB | 00m00s [104/104] Installing python3-devel-0:3. 100% | 8.7 MiB/s | 2.0 MiB | 00m00s Complete! Finish: build setup for python-xbout-0.3.6-6.fc44.src.rpm Start: rpmbuild python-xbout-0.3.6-6.fc44.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1753401600 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.pXh2KH Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.HpzHMN + umask 022 + cd /builddir/build/BUILD/python-xbout-0.3.6-build + cd /builddir/build/BUILD/python-xbout-0.3.6-build + rm -rf xbout-0.3.6 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/xbout-0.3.6.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd xbout-0.3.6 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/xarray-version.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/sphinx-theme.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/fix-dirs.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + rm -rf xbout.egg-info + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.oLSIml + umask 022 + cd /builddir/build/BUILD/python-xbout-0.3.6-build + cd xbout-0.3.6 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir + RPM_TOXENV=py314 + FEDORA=44 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-xbout-0.3.6-build/pyproject-wheeldir --output /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-buildrequires -r Handling setuptools >= 65 from build-system.requires Requirement not satisfied: setuptools >= 65 Handling setuptools_scm[toml] >= 7 from build-system.requires Requirement not satisfied: setuptools_scm[toml] >= 7 Handling wheel >= 0.29.0 from build-system.requires Requirement not satisfied: wheel >= 0.29.0 Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-xbout-0.3.6-6.fc44.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Copr repository 100% | 71.4 KiB/s | 2.1 KiB | 00m00s fedora 100% | 477.7 KiB/s | 29.1 KiB | 00m00s Repositories loaded. Package "pyproject-rpm-macros-1.18.4-1.fc44.noarch" is already installed.Package Arch Version Repository Size Installing: python3-pip noarch 25.2-2.fc44 fedora 11.3 MiB python3-setuptools noarch 78.1.1-13.fc44 fedora 9.0 MiB python3-setuptools_scm noarch 8.3.1-7.fc44 fedora 354.5 KiB python3-setuptools_scm+toml noarch 8.3.1-7.fc44 fedora 9.8 KiB python3-wheel noarch 1:0.45.1-17.fc44 fedora 593.1 KiB Transaction Summary: Installing: 5 packages Package "python3-boutdata-0.3.0-5.fc44.noarch" is already installed. Package "python3-devel-3.14.0~rc2-1.fc44.x86_64" is already installed. Package "python3-sphinx-autodoc-typehints-3.1.0-4.fc44.noarch" is already installed. Package "python3-packaging-25.0-5.fc44.noarch" is already installed. Package "python3-pytest-8.3.5-8.fc44.noarch" is already installed. Package "python3-sphinx-1:8.2.3-10.fc44.noarch" is already installed. Total size of inbound packages is 5 MiB. Need to download 5 MiB. After this operation, 21 MiB extra will be used (install 21 MiB, remove 0 B). [1/5] python3-setuptools_scm-0:8.3.1-7. 100% | 284.0 KiB/s | 121.5 KiB | 00m00s [2/5] python3-setuptools_scm+toml-0:8.3 100% | 105.7 KiB/s | 9.7 KiB | 00m00s [3/5] python3-wheel-1:0.45.1-17.fc44.no 100% | 1.1 MiB/s | 182.1 KiB | 00m00s [4/5] python3-setuptools-0:78.1.1-13.fc 100% | 2.8 MiB/s | 2.1 MiB | 00m01s [5/5] python3-pip-0:25.2-2.fc44.noarch 100% | 3.4 MiB/s | 2.6 MiB | 00m01s -------------------------------------------------------------------------------- [5/5] Total 100% | 6.4 MiB/s | 5.0 MiB | 00m01s Running transaction [1/7] Verify package files 100% | 277.0 B/s | 5.0 B | 00m00s [2/7] Prepare transaction 100% | 98.0 B/s | 5.0 B | 00m00s [3/7] Installing python3-setuptools-0:7 100% | 86.2 MiB/s | 9.2 MiB | 00m00s [4/7] Installing python3-setuptools_scm 100% | 52.2 MiB/s | 374.4 KiB | 00m00s [5/7] Installing python3-setuptools_scm 100% | 121.1 KiB/s | 124.0 B | 00m00s [6/7] Installing python3-wheel-1:0.45.1 100% | 24.9 MiB/s | 613.1 KiB | 00m00s [7/7] Installing python3-pip-0:25.2-2.f 100% | 67.4 MiB/s | 11.5 MiB | 00m00s Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1753401600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.YUFBqK + umask 022 + cd /builddir/build/BUILD/python-xbout-0.3.6-build + cd xbout-0.3.6 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir + RPM_TOXENV=py314 + FEDORA=44 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-xbout-0.3.6-build/pyproject-wheeldir --output /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-buildrequires -r Handling setuptools >= 65 from build-system.requires Requirement satisfied: setuptools >= 65 (installed: setuptools 78.1.1) Handling setuptools_scm[toml] >= 7 from build-system.requires Requirement satisfied: setuptools_scm[toml] >= 7 (installed: setuptools_scm 8.3.1) (extras are currently not checked) Handling wheel >= 0.29.0 from build-system.requires Requirement satisfied: wheel >= 0.29.0 (installed: wheel 0.45.1) /usr/lib/python3.14/site-packages/setuptools_scm/git.py:310: UserWarning: git archive did not support describe output warnings.warn("git archive did not support describe output") /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running egg_info creating xbout.egg-info writing xbout.egg-info/PKG-INFO writing dependency_links to xbout.egg-info/dependency_links.txt writing requirements to xbout.egg-info/requires.txt writing top-level names to xbout.egg-info/top_level.txt writing manifest file 'xbout.egg-info/SOURCES.txt' WARNING setuptools_scm._file_finders.git git archive detected - fallback to listing all files adding license file 'LICENSE' writing manifest file 'xbout.egg-info/SOURCES.txt' /usr/lib/python3.14/site-packages/setuptools_scm/git.py:310: UserWarning: git archive did not support describe output warnings.warn("git archive did not support describe output") /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running dist_info writing xbout.egg-info/PKG-INFO writing dependency_links to xbout.egg-info/dependency_links.txt writing requirements to xbout.egg-info/requires.txt writing top-level names to xbout.egg-info/top_level.txt WARNING setuptools_scm._file_finders.git git archive detected - fallback to listing all files adding license file 'LICENSE' writing manifest file 'xbout.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout-0.3.6.dist-info' Handling xarray>=0.18.0 from hook generated metadata: Requires-Dist (xbout) Requirement not satisfied: xarray>=0.18.0 Handling boutdata>=0.1.4 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: boutdata>=0.1.4 (installed: boutdata 0.3.0) Handling dask[array]>=2.10.0 from hook generated metadata: Requires-Dist (xbout) Requirement not satisfied: dask[array]>=2.10.0 Handling gelidum>=0.5.3 from hook generated metadata: Requires-Dist (xbout) Requirement not satisfied: gelidum>=0.5.3 Handling natsort>=5.5.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: natsort>=5.5.0 (installed: natsort 8.4.0) Handling matplotlib!=3.3.0,!=3.3.1,!=3.3.2,>=3.1.1 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: matplotlib!=3.3.0,!=3.3.1,!=3.3.2,>=3.1.1 (installed: matplotlib 3.10.6) Handling animatplot-ng>=0.4.2 from hook generated metadata: Requires-Dist (xbout) Requirement not satisfied: animatplot-ng>=0.4.2 Handling netcdf4>=1.4.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: netcdf4>=1.4.0 (installed: netcdf4 1.7.2) Handling Pillow>=6.1.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: Pillow>=6.1.0 (installed: Pillow 11.3.0) Handling numpy>=1.18.0; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: numpy>=1.18.0; extra == "calc" Handling scipy>=1.3.0; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: scipy>=1.3.0; extra == "calc" Handling dask>=2.2.0; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: dask>=2.2.0; extra == "calc" Handling statsmodels>=0.10.1; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: statsmodels>=0.10.1; extra == "calc" Handling xrft; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: xrft; extra == "calc" Handling xhistogram; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: xhistogram; extra == "calc" Handling sphinx>=5.3; extra == "docs" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: sphinx>=5.3; extra == "docs" Handling sphinx-book-theme>=0.4.0rc1; extra == "docs" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: sphinx-book-theme>=0.4.0rc1; extra == "docs" Handling sphinx_autodoc_typehints>=1.19; extra == "docs" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: sphinx_autodoc_typehints>=1.19; extra == "docs" Handling k3d>=2.8.0; extra == "3d-plot" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: k3d>=2.8.0; extra == "3d-plot" Handling mayavi>=4.7.2; extra == "3d-plot" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: mayavi>=4.7.2; extra == "3d-plot" Handling wand; extra == "3d-plot" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: wand; extra == "3d-plot" Handling pytest>=3.3.0; extra == "tests" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: pytest>=3.3.0; extra == "tests" Handling pytest-cov; extra == "tests" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: pytest-cov; extra == "tests" + cat /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-buildrequires + rm -rfv xbout-0.3.6.dist-info/ removed 'xbout-0.3.6.dist-info/licenses/LICENSE' removed directory 'xbout-0.3.6.dist-info/licenses' removed 'xbout-0.3.6.dist-info/METADATA' removed 'xbout-0.3.6.dist-info/top_level.txt' removed directory 'xbout-0.3.6.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-xbout-0.3.6-6.fc44.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Copr repository 100% | 71.4 KiB/s | 2.1 KiB | 00m00s fedora 100% | 502.4 KiB/s | 29.1 KiB | 00m00s Repositories loaded. Package "pyproject-rpm-macros-1.18.4-1.fc44.noarch" is already installed. Package "python3-boutdata-0.3.0-5.fc44.noarch" is already installed. Package "python3-devel-3.14.0~rc2-1.fc44.x86_64" is already installed. Package "python3-sphinx-autodoc-typehints-3.1.0-4.fc44.noarch" is already installed. Package "python3-boutdata-0.3.0-5.fc44.noarch" is already installed. Package "python3-natsort-8.4.0-7.fc44.noarch" is already installed. Package "python3-netcdf4-1.7.2-8.fc44.x86_64" is already installed. Package "python3-packaging-25.0-5.fc44.noarch" is already installed. Package "python3-pillow-11.3.0-4.fc44.x86_64" is already installed. Package "python3-pip-25.2-2.fc44.noarch" is already installed. Package "python3-pytest-8.3.5-8.fc44.noarch" is already installed. Package "python3-setuptools-78.1.1-13.fc44.noarch" is already installed. Package "python3-setuptools_scm-8.3.1-7.fc44.noarch" is already installed. Package "python3-setuptools_scm+toml-8.3.1-7.fc44.noarch" is already installed. Package "python3-sphinx-1:8.2.3-10.fc44.noarch" is already installed. Package "python3-wheel-1:0.45.1-17.fc44.noarch" is already installed. Package Arch Version Repository Size Installing: python3-animatplot noarch 0.4.5-3.fc44 fedora 113.0 KiB python3-dask noarch 2025.4.1-5.fc44 fedora 20.5 MiB python3-dask+array noarch 2025.4.1-5.fc44 fedora 6.8 KiB python3-gelidum noarch 0.7.0-9.fc44 fedora 123.7 KiB python3-xarray noarch 2025.4.0-2.fc44 fedora 20.0 MiB Installing dependencies: libyaml x86_64 0.2.5-17.fc43 fedora 134.6 KiB python3-click noarch 1:8.1.7-10.fc44 fedora 1.2 MiB python3-cloudpickle noarch 3.1.1-6.fc44 fedora 129.3 KiB python3-fsspec noarch 2025.9.0-1.fc44 fedora 1.9 MiB python3-locket noarch 1.0.0-17.fc44 fedora 20.9 KiB python3-pandas x86_64 2.2.3-5.fc43~bootstrap fedora 43.5 MiB python3-partd noarch 1.4.2-7.fc44 fedora 166.8 KiB python3-pytz noarch 2025.2-4.fc44 fedora 224.0 KiB python3-pyyaml x86_64 6.0.2-6.fc44 fedora 793.4 KiB python3-toolz noarch 1.0.0-5.fc44 fedora 618.0 KiB Transaction Summary: Installing: 15 packages Total size of inbound packages is 17 MiB. Need to download 17 MiB. After this operation, 89 MiB extra will be used (install 89 MiB, remove 0 B). [ 1/15] python3-dask+array-0:2025.4.1-5 100% | 135.5 KiB/s | 12.3 KiB | 00m00s [ 2/15] python3-gelidum-0:0.7.0-9.fc44. 100% | 432.9 KiB/s | 57.1 KiB | 00m00s [ 3/15] python3-animatplot-0:0.4.5-3.fc 100% | 1.7 MiB/s | 56.2 KiB | 00m00s [ 4/15] python3-click-1:8.1.7-10.fc44.n 100% | 3.7 MiB/s | 254.4 KiB | 00m00s [ 5/15] python3-dask-0:2025.4.1-5.fc44. 100% | 15.3 MiB/s | 3.7 MiB | 00m00s [ 6/15] python3-cloudpickle-0:3.1.1-6.f 100% | 2.0 MiB/s | 48.1 KiB | 00m00s [ 7/15] python3-fsspec-0:2025.9.0-1.fc4 100% | 17.5 MiB/s | 464.7 KiB | 00m00s [ 8/15] python3-xarray-0:2025.4.0-2.fc4 100% | 17.1 MiB/s | 3.1 MiB | 00m00s [ 9/15] python3-partd-0:1.4.2-7.fc44.no 100% | 2.6 MiB/s | 63.1 KiB | 00m00s [10/15] python3-pyyaml-0:6.0.2-6.fc44.x 100% | 10.5 MiB/s | 236.3 KiB | 00m00s [11/15] python3-toolz-0:1.0.0-5.fc44.no 100% | 7.7 MiB/s | 174.0 KiB | 00m00s [12/15] python3-locket-0:1.0.0-17.fc44. 100% | 902.4 KiB/s | 18.0 KiB | 00m00s [13/15] libyaml-0:0.2.5-17.fc43.x86_64 100% | 2.8 MiB/s | 60.1 KiB | 00m00s [14/15] python3-pytz-0:2025.2-4.fc44.no 100% | 3.2 MiB/s | 66.1 KiB | 00m00s [15/15] python3-pandas-0:2.2.3-5.fc43~b 100% | 53.0 MiB/s | 8.3 MiB | 00m00s -------------------------------------------------------------------------------- [15/15] Total 100% | 37.4 MiB/s | 16.5 MiB | 00m00s Running transaction [ 1/17] Verify package files 100% | 241.0 B/s | 15.0 B | 00m00s [ 2/17] Prepare transaction 100% | 189.0 B/s | 15.0 B | 00m00s [ 3/17] Installing python3-toolz-0:1.0. 100% | 77.8 MiB/s | 637.6 KiB | 00m00s [ 4/17] Installing python3-pytz-0:2025. 100% | 37.3 MiB/s | 229.4 KiB | 00m00s [ 5/17] Installing python3-pandas-0:2.2 100% | 175.8 MiB/s | 43.8 MiB | 00m00s [ 6/17] Installing libyaml-0:0.2.5-17.f 100% | 66.4 MiB/s | 136.0 KiB | 00m00s [ 7/17] Installing python3-pyyaml-0:6.0 100% | 37.5 MiB/s | 807.4 KiB | 00m00s [ 8/17] Installing python3-locket-0:1.0 100% | 11.4 MiB/s | 23.4 KiB | 00m00s [ 9/17] Installing python3-partd-0:1.4. 100% | 43.0 MiB/s | 176.2 KiB | 00m00s [10/17] Installing python3-fsspec-0:202 100% | 113.5 MiB/s | 1.9 MiB | 00m00s [11/17] Installing python3-cloudpickle- 100% | 65.0 MiB/s | 133.2 KiB | 00m00s [12/17] Installing python3-click-1:8.1. 100% | 106.4 MiB/s | 1.2 MiB | 00m00s [13/17] Installing python3-dask-0:2025. 100% | 137.0 MiB/s | 20.7 MiB | 00m00s [14/17] Installing python3-dask+array-0 100% | 60.5 KiB/s | 124.0 B | 00m00s [15/17] Installing python3-xarray-0:202 100% | 185.9 MiB/s | 20.1 MiB | 00m00s [16/17] Installing python3-animatplot-0 100% | 30.4 MiB/s | 124.5 KiB | 00m00s [17/17] Installing python3-gelidum-0:0. 100% | 3.0 MiB/s | 135.6 KiB | 00m00s Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1753401600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.Fj4dgS + umask 022 + cd /builddir/build/BUILD/python-xbout-0.3.6-build + cd xbout-0.3.6 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir + RPM_TOXENV=py314 + FEDORA=44 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-xbout-0.3.6-build/pyproject-wheeldir --output /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-buildrequires -r Handling setuptools >= 65 from build-system.requires Requirement satisfied: setuptools >= 65 (installed: setuptools 78.1.1) Handling setuptools_scm[toml] >= 7 from build-system.requires Requirement satisfied: setuptools_scm[toml] >= 7 (installed: setuptools_scm 8.3.1) (extras are currently not checked) Handling wheel >= 0.29.0 from build-system.requires Requirement satisfied: wheel >= 0.29.0 (installed: wheel 0.45.1) /usr/lib/python3.14/site-packages/setuptools_scm/git.py:310: UserWarning: git archive did not support describe output warnings.warn("git archive did not support describe output") /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running egg_info writing xbout.egg-info/PKG-INFO writing dependency_links to xbout.egg-info/dependency_links.txt writing requirements to xbout.egg-info/requires.txt writing top-level names to xbout.egg-info/top_level.txt WARNING setuptools_scm._file_finders.git git archive detected - fallback to listing all files adding license file 'LICENSE' writing manifest file 'xbout.egg-info/SOURCES.txt' /usr/lib/python3.14/site-packages/setuptools_scm/git.py:310: UserWarning: git archive did not support describe output warnings.warn("git archive did not support describe output") /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running dist_info writing xbout.egg-info/PKG-INFO writing dependency_links to xbout.egg-info/dependency_links.txt writing requirements to xbout.egg-info/requires.txt writing top-level names to xbout.egg-info/top_level.txt WARNING setuptools_scm._file_finders.git git archive detected - fallback to listing all files adding license file 'LICENSE' writing manifest file 'xbout.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout-0.3.6.dist-info' Handling xarray>=0.18.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: xarray>=0.18.0 (installed: xarray 2025.4.0) Handling boutdata>=0.1.4 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: boutdata>=0.1.4 (installed: boutdata 0.3.0) Handling dask[array]>=2.10.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: dask[array]>=2.10.0 (installed: dask 2025.4.1) (extras are currently not checked) Handling gelidum>=0.5.3 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: gelidum>=0.5.3 (installed: gelidum 0.7.0) Handling natsort>=5.5.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: natsort>=5.5.0 (installed: natsort 8.4.0) Handling matplotlib!=3.3.0,!=3.3.1,!=3.3.2,>=3.1.1 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: matplotlib!=3.3.0,!=3.3.1,!=3.3.2,>=3.1.1 (installed: matplotlib 3.10.6) Handling animatplot-ng>=0.4.2 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: animatplot-ng>=0.4.2 (installed: animatplot-ng 0.4.5) Handling netcdf4>=1.4.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: netcdf4>=1.4.0 (installed: netcdf4 1.7.2) Handling Pillow>=6.1.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: Pillow>=6.1.0 (installed: Pillow 11.3.0) Handling numpy>=1.18.0; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: numpy>=1.18.0; extra == "calc" Handling scipy>=1.3.0; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: scipy>=1.3.0; extra == "calc" Handling dask>=2.2.0; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: dask>=2.2.0; extra == "calc" Handling statsmodels>=0.10.1; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: statsmodels>=0.10.1; extra == "calc" Handling xrft; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: xrft; extra == "calc" Handling xhistogram; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: xhistogram; extra == "calc" Handling sphinx>=5.3; extra == "docs" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: sphinx>=5.3; extra == "docs" Handling sphinx-book-theme>=0.4.0rc1; extra == "docs" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: sphinx-book-theme>=0.4.0rc1; extra == "docs" Handling sphinx_autodoc_typehints>=1.19; extra == "docs" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: sphinx_autodoc_typehints>=1.19; extra == "docs" Handling k3d>=2.8.0; extra == "3d-plot" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: k3d>=2.8.0; extra == "3d-plot" Handling mayavi>=4.7.2; extra == "3d-plot" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: mayavi>=4.7.2; extra == "3d-plot" Handling wand; extra == "3d-plot" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: wand; extra == "3d-plot" Handling pytest>=3.3.0; extra == "tests" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: pytest>=3.3.0; extra == "tests" Handling pytest-cov; extra == "tests" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: pytest-cov; extra == "tests" + cat /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-buildrequires + rm -rfv xbout-0.3.6.dist-info/ removed 'xbout-0.3.6.dist-info/licenses/LICENSE' removed directory 'xbout-0.3.6.dist-info/licenses' removed 'xbout-0.3.6.dist-info/METADATA' removed 'xbout-0.3.6.dist-info/top_level.txt' removed directory 'xbout-0.3.6.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-xbout-0.3.6-6.fc44.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Copr repository 100% | 69.1 KiB/s | 2.1 KiB | 00m00s fedora 100% | 441.5 KiB/s | 29.1 KiB | 00m00s Repositories loaded. Package "pyproject-rpm-macros-1.18.4-1.fc44.noarch" is already installed. Package "python3-boutdata-0.3.0-5.fc44.noarch" is already installed. Package "python3-devel-3.14.0~rc2-1.fc44.x86_64" is already installed. Package "python3-sphinx-autodoc-typehints-3.1.0-4.fc44.noarch" is already installed. Package "python3-animatplot-0.4.5-3.fc44.noarch" is already installed. Package "python3-boutdata-0.3.0-5.fc44.noarch" is already installed. Package "python3-dask-2025.4.1-5.fc44.noarch" is already installed. Package "python3-dask+array-2025.4.1-5.fc44.noarch" is already installed. Package "python3-gelidum-0.7.0-9.fc44.noarch" is already installed. Package "python3-natsort-8.4.0-7.fc44.noarch" is already installed. Package "python3-netcdf4-1.7.2-8.fc44.x86_64" is already installed. Package "python3-packaging-25.0-5.fc44.noarch" is already installed. Package "python3-pillow-11.3.0-4.fc44.x86_64" is already installed. Package "python3-pip-25.2-2.fc44.noarch" is already installed. Package "python3-pytest-8.3.5-8.fc44.noarch" is already installed. Package "python3-setuptools-78.1.1-13.fc44.noarch" is already installed. Package "python3-setuptools_scm-8.3.1-7.fc44.noarch" is already installed. Package "python3-setuptools_scm+toml-8.3.1-7.fc44.noarch" is already installed. Package "python3-sphinx-1:8.2.3-10.fc44.noarch" is already installed. Package "python3-wheel-1:0.45.1-17.fc44.noarch" is already installed. Package "python3-xarray-2025.4.0-2.fc44.noarch" is already installed. Nothing to do. Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1753401600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.4Ocb7Y + umask 022 + cd /builddir/build/BUILD/python-xbout-0.3.6-build + cd xbout-0.3.6 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir + RPM_TOXENV=py314 + FEDORA=44 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-xbout-0.3.6-build/pyproject-wheeldir --output /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-buildrequires -r Handling setuptools >= 65 from build-system.requires Requirement satisfied: setuptools >= 65 (installed: setuptools 78.1.1) Handling setuptools_scm[toml] >= 7 from build-system.requires Requirement satisfied: setuptools_scm[toml] >= 7 (installed: setuptools_scm 8.3.1) (extras are currently not checked) Handling wheel >= 0.29.0 from build-system.requires Requirement satisfied: wheel >= 0.29.0 (installed: wheel 0.45.1) /usr/lib/python3.14/site-packages/setuptools_scm/git.py:310: UserWarning: git archive did not support describe output warnings.warn("git archive did not support describe output") /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running egg_info writing xbout.egg-info/PKG-INFO writing dependency_links to xbout.egg-info/dependency_links.txt writing requirements to xbout.egg-info/requires.txt writing top-level names to xbout.egg-info/top_level.txt WARNING setuptools_scm._file_finders.git git archive detected - fallback to listing all files adding license file 'LICENSE' writing manifest file 'xbout.egg-info/SOURCES.txt' /usr/lib/python3.14/site-packages/setuptools_scm/git.py:310: UserWarning: git archive did not support describe output warnings.warn("git archive did not support describe output") /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running dist_info writing xbout.egg-info/PKG-INFO writing dependency_links to xbout.egg-info/dependency_links.txt writing requirements to xbout.egg-info/requires.txt writing top-level names to xbout.egg-info/top_level.txt WARNING setuptools_scm._file_finders.git git archive detected - fallback to listing all files adding license file 'LICENSE' writing manifest file 'xbout.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout-0.3.6.dist-info' Handling xarray>=0.18.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: xarray>=0.18.0 (installed: xarray 2025.4.0) Handling boutdata>=0.1.4 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: boutdata>=0.1.4 (installed: boutdata 0.3.0) Handling dask[array]>=2.10.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: dask[array]>=2.10.0 (installed: dask 2025.4.1) (extras are currently not checked) Handling gelidum>=0.5.3 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: gelidum>=0.5.3 (installed: gelidum 0.7.0) Handling natsort>=5.5.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: natsort>=5.5.0 (installed: natsort 8.4.0) Handling matplotlib!=3.3.0,!=3.3.1,!=3.3.2,>=3.1.1 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: matplotlib!=3.3.0,!=3.3.1,!=3.3.2,>=3.1.1 (installed: matplotlib 3.10.6) Handling animatplot-ng>=0.4.2 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: animatplot-ng>=0.4.2 (installed: animatplot-ng 0.4.5) Handling netcdf4>=1.4.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: netcdf4>=1.4.0 (installed: netcdf4 1.7.2) Handling Pillow>=6.1.0 from hook generated metadata: Requires-Dist (xbout) Requirement satisfied: Pillow>=6.1.0 (installed: Pillow 11.3.0) Handling numpy>=1.18.0; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: numpy>=1.18.0; extra == "calc" Handling scipy>=1.3.0; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: scipy>=1.3.0; extra == "calc" Handling dask>=2.2.0; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: dask>=2.2.0; extra == "calc" Handling statsmodels>=0.10.1; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: statsmodels>=0.10.1; extra == "calc" Handling xrft; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: xrft; extra == "calc" Handling xhistogram; extra == "calc" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: xhistogram; extra == "calc" Handling sphinx>=5.3; extra == "docs" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: sphinx>=5.3; extra == "docs" Handling sphinx-book-theme>=0.4.0rc1; extra == "docs" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: sphinx-book-theme>=0.4.0rc1; extra == "docs" Handling sphinx_autodoc_typehints>=1.19; extra == "docs" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: sphinx_autodoc_typehints>=1.19; extra == "docs" Handling k3d>=2.8.0; extra == "3d-plot" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: k3d>=2.8.0; extra == "3d-plot" Handling mayavi>=4.7.2; extra == "3d-plot" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: mayavi>=4.7.2; extra == "3d-plot" Handling wand; extra == "3d-plot" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: wand; extra == "3d-plot" Handling pytest>=3.3.0; extra == "tests" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: pytest>=3.3.0; extra == "tests" Handling pytest-cov; extra == "tests" from hook generated metadata: Requires-Dist (xbout) Ignoring alien requirement: pytest-cov; extra == "tests" + cat /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-buildrequires + rm -rfv xbout-0.3.6.dist-info/ removed 'xbout-0.3.6.dist-info/licenses/LICENSE' removed directory 'xbout-0.3.6.dist-info/licenses' removed 'xbout-0.3.6.dist-info/METADATA' removed 'xbout-0.3.6.dist-info/top_level.txt' removed directory 'xbout-0.3.6.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.cGZxEC + umask 022 + cd /builddir/build/BUILD/python-xbout-0.3.6-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd xbout-0.3.6 + mkdir -p /builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/python-xbout-0.3.6-build/pyproject-wheeldir Processing /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) /usr/lib/python3.14/site-packages/setuptools_scm/git.py:310: UserWarning: git archive did not support describe output warnings.warn("git archive did not support describe output") /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running dist_info creating /builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir/pip-modern-metadata-wz91vk7k/xbout.egg-info writing /builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir/pip-modern-metadata-wz91vk7k/xbout.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir/pip-modern-metadata-wz91vk7k/xbout.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir/pip-modern-metadata-wz91vk7k/xbout.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir/pip-modern-metadata-wz91vk7k/xbout.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir/pip-modern-metadata-wz91vk7k/xbout.egg-info/SOURCES.txt' WARNING setuptools_scm._file_finders.git git archive detected - fallback to listing all files adding license file 'LICENSE' writing manifest file '/builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir/pip-modern-metadata-wz91vk7k/xbout.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir/pip-modern-metadata-wz91vk7k/xbout-0.3.6.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: xbout Building wheel for xbout (pyproject.toml): started Running command Building wheel for xbout (pyproject.toml) /usr/lib/python3.14/site-packages/setuptools_scm/git.py:310: UserWarning: git archive did not support describe output warnings.warn("git archive did not support describe output") /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running bdist_wheel running build running build_py creating build/lib/xbout copying xbout/utils.py -> build/lib/xbout copying xbout/region.py -> build/lib/xbout copying xbout/load.py -> build/lib/xbout copying xbout/geometries.py -> build/lib/xbout copying xbout/fastoutput.py -> build/lib/xbout copying xbout/conftest.py -> build/lib/xbout copying xbout/boutdataset.py -> build/lib/xbout copying xbout/boutdataarray.py -> build/lib/xbout copying xbout/_version.py -> build/lib/xbout copying xbout/__init__.py -> build/lib/xbout creating build/lib/xbout/calc copying xbout/calc/turbulence.py -> build/lib/xbout/calc copying xbout/calc/__init__.py -> build/lib/xbout/calc creating build/lib/xbout/plotting copying xbout/plotting/utils.py -> build/lib/xbout/plotting copying xbout/plotting/plotfuncs.py -> build/lib/xbout/plotting copying xbout/plotting/animate.py -> build/lib/xbout/plotting copying xbout/plotting/__init__.py -> build/lib/xbout/plotting running egg_info writing xbout.egg-info/PKG-INFO writing dependency_links to xbout.egg-info/dependency_links.txt writing requirements to xbout.egg-info/requires.txt writing top-level names to xbout.egg-info/top_level.txt WARNING setuptools_scm._file_finders.git git archive detected - fallback to listing all files adding license file 'LICENSE' writing manifest file 'xbout.egg-info/SOURCES.txt' /usr/lib/python3.14/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'xbout.calc.tests' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'xbout.calc.tests' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'xbout.calc.tests' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'xbout.calc.tests' to be distributed and are already explicitly excluding 'xbout.calc.tests' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.14/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'xbout.tests' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'xbout.tests' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'xbout.tests' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'xbout.tests' to be distributed and are already explicitly excluding 'xbout.tests' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.14/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'xbout.tests.data.options' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'xbout.tests.data.options' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'xbout.tests.data.options' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'xbout.tests.data.options' to be distributed and are already explicitly excluding 'xbout.tests.data.options' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.14/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'xbout.tests.data.restart' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'xbout.tests.data.restart' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'xbout.tests.data.restart' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'xbout.tests.data.restart' to be distributed and are already explicitly excluding 'xbout.tests.data.restart' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.14/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'xbout.tests.inputs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'xbout.tests.inputs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'xbout.tests.inputs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'xbout.tests.inputs' to be distributed and are already explicitly excluding 'xbout.tests.inputs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating build/lib/xbout/tests copying xbout/tests/__init__.py -> build/lib/xbout/tests copying xbout/tests/conftest.py -> build/lib/xbout/tests copying xbout/tests/test_against_collect.py -> build/lib/xbout/tests copying xbout/tests/test_animate.py -> build/lib/xbout/tests copying xbout/tests/test_boutdataarray.py -> build/lib/xbout/tests copying xbout/tests/test_boutdataset.py -> build/lib/xbout/tests copying xbout/tests/test_fastoutput.py -> build/lib/xbout/tests copying xbout/tests/test_geometries.py -> build/lib/xbout/tests copying xbout/tests/test_grid.py -> build/lib/xbout/tests copying xbout/tests/test_init.py -> build/lib/xbout/tests copying xbout/tests/test_load.py -> build/lib/xbout/tests copying xbout/tests/test_plot.py -> build/lib/xbout/tests copying xbout/tests/test_region.py -> build/lib/xbout/tests copying xbout/tests/test_utils.py -> build/lib/xbout/tests copying xbout/tests/utils_for_tests.py -> build/lib/xbout/tests creating build/lib/xbout/tests/data/options copying xbout/tests/data/options/BOUT.inp -> build/lib/xbout/tests/data/options creating build/lib/xbout/tests/data/restart copying xbout/tests/data/restart/BOUT.restart.0.nc -> build/lib/xbout/tests/data/restart copying xbout/tests/data/restart/BOUT.restart.1.nc -> build/lib/xbout/tests/data/restart copying xbout/tests/data/restart/README.md -> build/lib/xbout/tests/data/restart creating build/lib/xbout/tests/inputs copying xbout/tests/inputs/s-alpha.inp -> build/lib/xbout/tests/inputs creating build/lib/xbout/calc/tests copying xbout/calc/tests/test_turbulence.py -> build/lib/xbout/calc/tests installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/xbout creating build/bdist.linux-x86_64/wheel/xbout/tests creating build/bdist.linux-x86_64/wheel/xbout/tests/inputs copying build/lib/xbout/tests/inputs/s-alpha.inp -> build/bdist.linux-x86_64/wheel/./xbout/tests/inputs creating build/bdist.linux-x86_64/wheel/xbout/tests/data creating build/bdist.linux-x86_64/wheel/xbout/tests/data/restart copying build/lib/xbout/tests/data/restart/README.md -> build/bdist.linux-x86_64/wheel/./xbout/tests/data/restart copying build/lib/xbout/tests/data/restart/BOUT.restart.1.nc -> build/bdist.linux-x86_64/wheel/./xbout/tests/data/restart copying build/lib/xbout/tests/data/restart/BOUT.restart.0.nc -> build/bdist.linux-x86_64/wheel/./xbout/tests/data/restart creating build/bdist.linux-x86_64/wheel/xbout/tests/data/options copying build/lib/xbout/tests/data/options/BOUT.inp -> build/bdist.linux-x86_64/wheel/./xbout/tests/data/options copying build/lib/xbout/tests/utils_for_tests.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_utils.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_region.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_plot.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_load.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_init.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_grid.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_geometries.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_fastoutput.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_boutdataset.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_boutdataarray.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_animate.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/test_against_collect.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/conftest.py -> build/bdist.linux-x86_64/wheel/./xbout/tests copying build/lib/xbout/tests/__init__.py -> build/bdist.linux-x86_64/wheel/./xbout/tests creating build/bdist.linux-x86_64/wheel/xbout/plotting copying build/lib/xbout/plotting/__init__.py -> build/bdist.linux-x86_64/wheel/./xbout/plotting copying build/lib/xbout/plotting/animate.py -> build/bdist.linux-x86_64/wheel/./xbout/plotting copying build/lib/xbout/plotting/plotfuncs.py -> build/bdist.linux-x86_64/wheel/./xbout/plotting copying build/lib/xbout/plotting/utils.py -> build/bdist.linux-x86_64/wheel/./xbout/plotting creating build/bdist.linux-x86_64/wheel/xbout/calc creating build/bdist.linux-x86_64/wheel/xbout/calc/tests copying build/lib/xbout/calc/tests/test_turbulence.py -> build/bdist.linux-x86_64/wheel/./xbout/calc/tests copying build/lib/xbout/calc/__init__.py -> build/bdist.linux-x86_64/wheel/./xbout/calc copying build/lib/xbout/calc/turbulence.py -> build/bdist.linux-x86_64/wheel/./xbout/calc copying build/lib/xbout/__init__.py -> build/bdist.linux-x86_64/wheel/./xbout copying build/lib/xbout/_version.py -> build/bdist.linux-x86_64/wheel/./xbout copying build/lib/xbout/boutdataarray.py -> build/bdist.linux-x86_64/wheel/./xbout copying build/lib/xbout/boutdataset.py -> build/bdist.linux-x86_64/wheel/./xbout copying build/lib/xbout/conftest.py -> build/bdist.linux-x86_64/wheel/./xbout copying build/lib/xbout/fastoutput.py -> build/bdist.linux-x86_64/wheel/./xbout copying build/lib/xbout/geometries.py -> build/bdist.linux-x86_64/wheel/./xbout copying build/lib/xbout/load.py -> build/bdist.linux-x86_64/wheel/./xbout copying build/lib/xbout/region.py -> build/bdist.linux-x86_64/wheel/./xbout copying build/lib/xbout/utils.py -> build/bdist.linux-x86_64/wheel/./xbout running install_egg_info Copying xbout.egg-info to build/bdist.linux-x86_64/wheel/./xbout-0.3.6-py3.14.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/xbout-0.3.6.dist-info/WHEEL creating '/builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir/pip-wheel-s392qine/.tmp-idwepc22/xbout-0.3.6-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'xbout/__init__.py' adding 'xbout/_version.py' adding 'xbout/boutdataarray.py' adding 'xbout/boutdataset.py' adding 'xbout/conftest.py' adding 'xbout/fastoutput.py' adding 'xbout/geometries.py' adding 'xbout/load.py' adding 'xbout/region.py' adding 'xbout/utils.py' adding 'xbout/calc/__init__.py' adding 'xbout/calc/turbulence.py' adding 'xbout/calc/tests/test_turbulence.py' adding 'xbout/plotting/__init__.py' adding 'xbout/plotting/animate.py' adding 'xbout/plotting/plotfuncs.py' adding 'xbout/plotting/utils.py' adding 'xbout/tests/__init__.py' adding 'xbout/tests/conftest.py' adding 'xbout/tests/test_against_collect.py' adding 'xbout/tests/test_animate.py' adding 'xbout/tests/test_boutdataarray.py' adding 'xbout/tests/test_boutdataset.py' adding 'xbout/tests/test_fastoutput.py' adding 'xbout/tests/test_geometries.py' adding 'xbout/tests/test_grid.py' adding 'xbout/tests/test_init.py' adding 'xbout/tests/test_load.py' adding 'xbout/tests/test_plot.py' adding 'xbout/tests/test_region.py' adding 'xbout/tests/test_utils.py' adding 'xbout/tests/utils_for_tests.py' adding 'xbout/tests/data/options/BOUT.inp' adding 'xbout/tests/data/restart/BOUT.restart.0.nc' adding 'xbout/tests/data/restart/BOUT.restart.1.nc' adding 'xbout/tests/data/restart/README.md' adding 'xbout/tests/inputs/s-alpha.inp' adding 'xbout-0.3.6.dist-info/licenses/LICENSE' adding 'xbout-0.3.6.dist-info/METADATA' adding 'xbout-0.3.6.dist-info/WHEEL' adding 'xbout-0.3.6.dist-info/top_level.txt' adding 'xbout-0.3.6.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for xbout (pyproject.toml): finished with status 'done' Created wheel for xbout: filename=xbout-0.3.6-py3-none-any.whl size=140106 sha256=575abd49520344d3a4fb9bcb9d2eee9b5fd17be61f895b0028993f92e53f1c71 Stored in directory: /builddir/.cache/pip/wheels/08/3c/3b/a041473b714187cd781301a93e81a37e416c8f0a7d803d2588 Successfully built xbout + PYTHONPATH=/builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6 + sphinx-build-3 docs html Running Sphinx v8.2.3 loading translations [en]... done making output directory... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. [autosummary] generating autosummary for: accessor_methods.rst, api.rst, extending_xbout.rst, index.rst, loading_data.rst [autosummary] generating autosummary for: /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.rst [autosummary] generating autosummary for: /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.boutdataarray.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.boutdataset.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.calc.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.conftest.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.fastoutput.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.geometries.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.load.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.plotting.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.region.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.utils.rst [autosummary] generating autosummary for: /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.boutdataarray.BoutDataArrayAccessor.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.boutdataset.BoutDatasetAccessor.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.calc.turbulence.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.conftest.pytest_addoption.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.conftest.pytest_collection_modifyitems.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.conftest.pytest_configure.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.fastoutput.open_fastoutput.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.geometries.UnregisteredGeometryError.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.geometries.add_fci_geometry_coords.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.geometries.add_s_alpha_geometry_coords.rst, ..., /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_boutdataset.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_fastoutput.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_geometries.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_grid.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_init.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_load.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_plot.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_region.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_utils.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.utils_for_tests.rst [autosummary] generating autosummary for: /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.calc.turbulence.rms.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.plotting.animate.animate_line.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.plotting.animate.animate_pcolormesh.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.plotting.animate.animate_poloidal.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.plotting.plotfuncs.plot2d_wrapper.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.plotting.plotfuncs.plot3d.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.plotting.plotfuncs.plot_regions.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.plotting.utils.plot_separatrices.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.plotting.utils.plot_separatrix.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.plotting.utils.plot_targets.rst, ..., /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_load.test_check_extensions.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_load.test_set_fci_coords.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_plot.TestPlot.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_region.TestRegion.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.test_utils.TestUtils.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.utils_for_tests.create_bout_ds.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.utils_for_tests.create_bout_ds_list.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.utils_for_tests.create_bout_grid_ds.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.utils_for_tests.load_example_input.rst, /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/generated/xbout.tests.utils_for_tests.set_geometry_from_input_file.rst loading intersphinx inventory 'python' from https://docs.python.org/3/objects.inv ... loading intersphinx inventory 'numpy' from https://numpy.org/doc/stable/objects.inv ... loading intersphinx inventory 'scipy' from https://docs.scipy.org/doc/scipy/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by NameResolutionError(": Failed to resolve 'numpy.org' ([Errno -3] Temporary failure in name resolution)")) WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NameResolutionError(": Failed to resolve 'docs.python.org' ([Errno -3] Temporary failure in name resolution)")) loading intersphinx inventory 'mayavi' from https://docs.enthought.com/mayavi/mayavi/objects.inv ... loading intersphinx inventory 'xarray' from https://docs.xarray.dev/en/latest/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.enthought.com/mayavi/mayavi/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.enthought.com', port=443): Max retries exceeded with url: /mayavi/mayavi/objects.inv (Caused by NameResolutionError(": Failed to resolve 'docs.enthought.com' ([Errno -3] Temporary failure in name resolution)")) WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.scipy.org/doc/scipy/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.scipy.org', port=443): Max retries exceeded with url: /doc/scipy/objects.inv (Caused by NameResolutionError(": Failed to resolve 'docs.scipy.org' ([Errno -3] Temporary failure in name resolution)")) WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.xarray.dev/en/latest/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.xarray.dev', port=443): Max retries exceeded with url: /en/latest/objects.inv (Caused by NameResolutionError(": Failed to resolve 'docs.xarray.dev' ([Errno -3] Temporary failure in name resolution)")) building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 5 source files that are out of date updating environment: [new config] 105 added, 0 changed, 0 removed reading sources... [ 1%] accessor_methods reading sources... [ 2%] api reading sources... [ 3%] extending_xbout reading sources... [ 4%] generated/xbout reading sources... [ 5%] generated/xbout.boutdataarray reading sources... [ 6%] generated/xbout.boutdataarray.BoutDataArrayAccessor reading sources... [ 7%] generated/xbout.boutdataset reading sources... [ 8%] generated/xbout.boutdataset.BoutDatasetAccessor reading sources... [ 9%] generated/xbout.calc reading sources... [ 10%] generated/xbout.calc.turbulence reading sources... [ 10%] generated/xbout.calc.turbulence.rms reading sources... [ 11%] generated/xbout.conftest reading sources... [ 12%] generated/xbout.conftest.pytest_addoption reading sources... [ 13%] generated/xbout.conftest.pytest_collection_modifyitems reading sources... [ 14%] generated/xbout.conftest.pytest_configure reading sources... [ 15%] generated/xbout.fastoutput reading sources... [ 16%] generated/xbout.fastoutput.open_fastoutput reading sources... [ 17%] generated/xbout.geometries reading sources... [ 18%] generated/xbout.geometries.UnregisteredGeometryError reading sources... [ 19%] generated/xbout.geometries.add_fci_geometry_coords reading sources... [ 20%] generated/xbout.geometries.add_s_alpha_geometry_coords reading sources... [ 21%] generated/xbout.geometries.add_toroidal_geometry_coords reading sources... [ 22%] generated/xbout.geometries.apply_geometry reading sources... [ 23%] generated/xbout.geometries.register_geometry reading sources... [ 24%] generated/xbout.load reading sources... [ 25%] generated/xbout.load.collect reading sources... [ 26%] generated/xbout.load.open_boutdataset reading sources... [ 27%] generated/xbout.plotting reading sources... [ 28%] generated/xbout.plotting.animate reading sources... [ 29%] generated/xbout.plotting.animate.animate_line reading sources... [ 30%] generated/xbout.plotting.animate.animate_pcolormesh reading sources... [ 30%] generated/xbout.plotting.animate.animate_poloidal reading sources... [ 31%] generated/xbout.plotting.plotfuncs reading sources... [ 32%] generated/xbout.plotting.plotfuncs.plot2d_wrapper reading sources... [ 33%] generated/xbout.plotting.plotfuncs.plot3d reading sources... [ 34%] generated/xbout.plotting.plotfuncs.plot_regions reading sources... [ 35%] generated/xbout.plotting.utils reading sources... [ 36%] generated/xbout.plotting.utils.plot_separatrices reading sources... [ 37%] generated/xbout.plotting.utils.plot_separatrix reading sources... [ 38%] generated/xbout.plotting.utils.plot_targets reading sources... [ 39%] generated/xbout.region reading sources... [ 40%] generated/xbout.region.Region reading sources... [ 41%] generated/xbout.region.topology_connected_double_null reading sources... [ 42%] generated/xbout.region.topology_core reading sources... [ 43%] generated/xbout.region.topology_limiter reading sources... [ 44%] generated/xbout.region.topology_lower_disconnected_double_null reading sources... [ 45%] generated/xbout.region.topology_single_null reading sources... [ 46%] generated/xbout.region.topology_sol reading sources... [ 47%] generated/xbout.region.topology_upper_disconnected_double_null reading sources... [ 48%] generated/xbout.region.topology_xpoint reading sources... [ 49%] generated/xbout.tests reading sources... [ 50%] generated/xbout.tests.conftest reading sources... [ 50%] generated/xbout.tests.conftest.bout_xyt_example_files reading sources... [ 51%] generated/xbout.tests.conftest.create_example_files_fci reading sources... [ 52%] generated/xbout.tests.conftest.create_example_grid_file_fci reading sources... [ 53%] generated/xbout.tests.test_against_collect reading sources... [ 54%] generated/xbout.tests.test_against_collect.TestAccuracyAgainstOldCollect reading sources... [ 55%] generated/xbout.tests.test_against_collect.test_speed_against_old_collect reading sources... [ 56%] generated/xbout.tests.test_animate reading sources... [ 57%] generated/xbout.tests.test_animate.TestAnimate reading sources... [ 58%] generated/xbout.tests.test_animate.create_test_file reading sources... [ 59%] generated/xbout.tests.test_boutdataarray reading sources... [ 60%] generated/xbout.tests.test_boutdataarray.TestBoutDataArrayMethods reading sources... [ 61%] generated/xbout.tests.test_boutdataset reading sources... [ 62%] generated/xbout.tests.test_boutdataset.TestBoutDatasetIsXarrayDataset reading sources... [ 63%] generated/xbout.tests.test_boutdataset.TestBoutDatasetMethods reading sources... [ 64%] generated/xbout.tests.test_boutdataset.TestLoadInputFile reading sources... [ 65%] generated/xbout.tests.test_boutdataset.TestLoadLogFile reading sources... [ 66%] generated/xbout.tests.test_boutdataset.TestSave reading sources... [ 67%] generated/xbout.tests.test_boutdataset.TestSaveRestart reading sources... [ 68%] generated/xbout.tests.test_fastoutput reading sources... [ 69%] generated/xbout.tests.test_fastoutput.TestFastOutput reading sources... [ 70%] generated/xbout.tests.test_fastoutput.make_fastoutput reading sources... [ 70%] generated/xbout.tests.test_fastoutput.make_fastoutput_set reading sources... [ 71%] generated/xbout.tests.test_geometries reading sources... [ 72%] generated/xbout.tests.test_geometries.TestGeometryRegistration reading sources... [ 73%] generated/xbout.tests.test_grid reading sources... [ 74%] generated/xbout.tests.test_grid.TestOpenGrid reading sources... [ 75%] generated/xbout.tests.test_grid.create_example_grid_file reading sources... [ 76%] generated/xbout.tests.test_init reading sources... [ 77%] generated/xbout.tests.test_init.test_version reading sources... [ 78%] generated/xbout.tests.test_load reading sources... [ 79%] generated/xbout.tests.test_load.TestArrange reading sources... [ 80%] generated/xbout.tests.test_load.TestOpen reading sources... [ 81%] generated/xbout.tests.test_load.TestPathHandling reading sources... [ 82%] generated/xbout.tests.test_load.TestStripMetadata reading sources... [ 83%] generated/xbout.tests.test_load.TestTrim reading sources... [ 84%] generated/xbout.tests.test_load.create_filepaths reading sources... [ 85%] generated/xbout.tests.test_load.test_check_extensions reading sources... [ 86%] generated/xbout.tests.test_load.test_set_fci_coords reading sources... [ 87%] generated/xbout.tests.test_plot reading sources... [ 88%] generated/xbout.tests.test_plot.TestPlot reading sources... [ 89%] generated/xbout.tests.test_region reading sources... [ 90%] generated/xbout.tests.test_region.TestRegion reading sources... [ 90%] generated/xbout.tests.test_utils reading sources... [ 91%] generated/xbout.tests.test_utils.TestUtils reading sources... [ 92%] generated/xbout.tests.utils_for_tests reading sources... [ 93%] generated/xbout.tests.utils_for_tests.create_bout_ds reading sources... [ 94%] generated/xbout.tests.utils_for_tests.create_bout_ds_list reading sources... [ 95%] generated/xbout.tests.utils_for_tests.create_bout_grid_ds reading sources... [ 96%] generated/xbout.tests.utils_for_tests.load_example_input reading sources... [ 97%] generated/xbout.tests.utils_for_tests.set_geometry_from_input_file reading sources... [ 98%] generated/xbout.utils reading sources... [ 99%] index reading sources... [100%] loading_data looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... WARNING: unsupported theme option 'repository_url' given WARNING: unsupported theme option 'repository_branch' given WARNING: unsupported theme option 'path_to_docs' given WARNING: unsupported theme option 'use_edit_page_button' given WARNING: unsupported theme option 'use_repository_button' given WARNING: unsupported theme option 'use_issues_button' given done copying assets... copying static files... WARNING: unsupported theme option 'home_page_in_toc' given Writing evaluated template result to /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/html/_static/language_data.js Writing evaluated template result to /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/html/_static/documentation_options.js Writing evaluated template result to /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/html/_static/basic.css Writing evaluated template result to /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/html/_static/alabaster.css copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 1%] accessor_methods writing output... [ 2%] api writing output... [ 3%] extending_xbout writing output... [ 4%] generated/xbout writing output... [ 5%] generated/xbout.boutdataarray writing output... [ 6%] generated/xbout.boutdataarray.BoutDataArrayAccessor writing output... 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[100%] loading_data /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/accessor_methods.rst:4: WARNING: 'any' reference target not found: xarray.Dataset [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/accessor_methods.rst:4: WARNING: 'any' reference target not found: xarray.DataArray [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/boutdataarray.py:docstring of xbout.boutdataarray.BoutDataArrayAccessor:4: WARNING: 'any' reference target not found: BoutOptionsFile [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/boutdataarray.py:docstring of xbout.boutdataarray.BoutDataArrayAccessor.interpolate_to_cartesian:3: WARNING: 'any' reference target not found: numpy.float32 [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/boutdataarray.py:docstring of xbout.boutdataarray.BoutDataArrayAccessor.interpolate_to_cartesian:14: WARNING: 'any' reference target not found: numpy.float32 [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/boutdataarray.py:docstring of xbout.boutdataarray.BoutDataArrayAccessor.interpolate_to_cartesian:16: WARNING: 'any' reference target not found: scipy.interpolate.RegularGridInterpolator [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/boutdataset.py:docstring of xbout.boutdataset.BoutDatasetAccessor:4: WARNING: 'any' reference target not found: BoutOptionsFile [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/boutdataset.py:docstring of xbout.boutdataset.BoutDatasetAccessor.integrate_midpoints:36: WARNING: 'any' reference target not found: ... [ref.any] generating indices... /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/boutdataset.py:docstring of xbout.boutdataset.BoutDatasetAccessor.interpolate_to_cartesian:3: WARNING: 'any' reference target not found: numpy.float32 [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/boutdataset.py:docstring of xbout.boutdataset.BoutDatasetAccessor.interpolate_to_cartesian:18: WARNING: 'any' reference target not found: numpy.float32 [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/boutdataset.py:docstring of xbout.boutdataset.BoutDatasetAccessor.interpolate_to_cartesian:21: WARNING: 'any' reference target not found: scipy.interpolate.RegularGridInterpolator [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/load.py:docstring of xbout.load.open_boutdataset:20: WARNING: 'any' reference target not found: xarray.open_dataset [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/load.py:docstring of xbout.load.open_boutdataset:94: WARNING: 'any' reference target not found: xarray.open_mfdataset [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/load.py:docstring of xbout.load.open_boutdataset:94: WARNING: 'any' reference target not found: xarray.open_dataset [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/plotting/plotfuncs.py:docstring of xbout.plotting.plotfuncs.plot2d_wrapper:3: WARNING: 'any' reference target not found: xarray.DataArray.plot [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/plotting/plotfuncs.py:docstring of xbout.plotting.plotfuncs.plot3d:68: WARNING: 'any' reference target not found: mayavi.mlab.view [ref.any] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/docs/loading_data.rst:12: WARNING: 'any' reference target not found: xarray.Dataset [ref.any] genindex py-modindex done highlighting module code... [ 4%] xbout.boutdataarray highlighting module code... [ 8%] xbout.boutdataset highlighting module code... [ 12%] xbout.calc.turbulence highlighting module code... [ 16%] xbout.conftest highlighting module code... [ 20%] xbout.fastoutput highlighting module code... [ 24%] xbout.geometries highlighting module code... [ 28%] xbout.load highlighting module code... [ 32%] xbout.plotting.animate highlighting module code... [ 36%] xbout.plotting.plotfuncs highlighting module code... [ 40%] xbout.plotting.utils highlighting module code... [ 44%] xbout.region highlighting module code... [ 48%] xbout.tests.conftest highlighting module code... [ 52%] xbout.tests.test_against_collect highlighting module code... [ 56%] xbout.tests.test_animate highlighting module code... [ 60%] xbout.tests.test_boutdataarray highlighting module code... [ 64%] xbout.tests.test_boutdataset highlighting module code... [ 68%] xbout.tests.test_fastoutput highlighting module code... [ 72%] xbout.tests.test_geometries highlighting module code... [ 76%] xbout.tests.test_grid highlighting module code... [ 80%] xbout.tests.test_init highlighting module code... [ 84%] xbout.tests.test_load highlighting module code... [ 88%] xbout.tests.test_plot highlighting module code... [ 92%] xbout.tests.test_region highlighting module code... [ 96%] xbout.tests.test_utils highlighting module code... [100%] xbout.tests.utils_for_tests writing additional pages... search done copying images... [100%] images/n_over_t.gif dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 29 warnings. The HTML pages are in html. + rm -rf html/.doctrees html/.buildinfo + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.IiX4K4 + umask 022 + cd /builddir/build/BUILD/python-xbout-0.3.6-build + '[' /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT ++ dirname /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT + mkdir -p /builddir/build/BUILD/python-xbout-0.3.6-build + mkdir /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd xbout-0.3.6 ++ xargs basename --multiple ++ ls /builddir/build/BUILD/python-xbout-0.3.6-build/pyproject-wheeldir/xbout-0.3.6-py3-none-any.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=xbout==0.3.6 + '[' -z xbout==0.3.6 ']' + TMPDIR=/builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/python-xbout-0.3.6-build/pyproject-wheeldir xbout==0.3.6 Using pip 25.2 from /usr/lib/python3.14/site-packages/pip (python 3.14) Looking in links: /builddir/build/BUILD/python-xbout-0.3.6-build/pyproject-wheeldir Processing /builddir/build/BUILD/python-xbout-0.3.6-build/pyproject-wheeldir/xbout-0.3.6-py3-none-any.whl Installing collected packages: xbout Successfully installed xbout-0.3.6 + '[' -d /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/bin ']' + rm -f /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages ']' + site_dirs+=("/usr/lib/python3.14/site-packages") + '[' /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib64/python3.14/site-packages '!=' /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages ']' + '[' -d /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib64/python3.14/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.14/site-packages/xbout-0.3.6.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout-0.3.6.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT --record /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout-0.3.6.dist-info/RECORD --output /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-record + rm -fv /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout-0.3.6.dist-info/RECORD removed '/builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout-0.3.6.dist-info/RECORD' + rm -fv /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout-0.3.6.dist-info/REQUESTED removed '/builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout-0.3.6.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-modules --buildroot /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT --sitelib /usr/lib/python3.14/site-packages --sitearch /usr/lib64/python3.14/site-packages --python-version 3.14 --pyproject-record /builddir/build/BUILD/python-xbout-0.3.6-build/python-xbout-0.3.6-6.fc44.x86_64-pyproject-record --prefix /usr xbout + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14 using python3.14 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/__pycache__/utils.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/__pycache__/region.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/__pycache__/load.cpython-314.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/__pycache__/boutdataset.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/__pycache__/geometries.cpython-314.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/__pycache__/load.cpython-314.pyc: replacing with normalized version /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/__pycache__/geometries.cpython-314.pyc: replacing with normalized version /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/__pycache__/fastoutput.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/__pycache__/conftest.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/__pycache__/_version.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/__pycache__/__init__.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/tests/__pycache__/utils_for_tests.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/tests/__pycache__/test_utils.cpython-314.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/tests/__pycache__/test_utils.cpython-314.pyc: replacing with normalized version /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/__pycache__/boutdataarray.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/tests/__pycache__/test_fastoutput.cpython-314.opt-1.pyc: replacing with normalized version 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/builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/tests/__pycache__/test_against_collect.cpython-314.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/tests/__pycache__/test_against_collect.cpython-314.pyc: replacing with normalized version /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/tests/__pycache__/conftest.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/tests/__pycache__/__init__.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/plotting/__pycache__/utils.cpython-314.opt-1.pyc: rewriting with normalized contents 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/builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/calc/tests/__pycache__/test_turbulence.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages/xbout/plotting/__pycache__/animate.cpython-314.opt-1.pyc: rewriting with normalized contents Scanned 21 directories and 106 files, processed 43 inodes, 43 modified (22 replaced + 21 rewritten), 0 unsupported format, 0 errors Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.7WhYXm + umask 022 + cd /builddir/build/BUILD/python-xbout-0.3.6-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd xbout-0.3.6 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin + PYTHONPATH=/builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib64/python3.14/site-packages:/builddir/build/BUILD/python-xbout-0.3.6-build/BUILDROOT/usr/lib/python3.14/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/python-xbout-0.3.6-build/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/pytest xbout --long --durations=0 ============================= test session starts ============================== platform linux -- Python 3.14.0rc2, pytest-8.3.5, pluggy-1.6.0 rootdir: /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6 configfile: pyproject.toml collected 796 items xbout/calc/tests/test_turbulence.py ..... [ 0%] xbout/tests/test_against_collect.py FFFFF... [ 1%] xbout/tests/test_animate.py EEEEEEEEEEEEEEEEEEEEEEEsEEEEEEEEEEEEEEE [ 6%] xbout/tests/test_boutdataarray.py FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF [ 11%] FFFFFFFFFFFFFFFFFF [ 13%] xbout/tests/test_boutdataset.py FFFFFFFFFFFFFFFFFFFFFF.FFFFFFFFFFFFFFFFF [ 18%] FFFFFFFFFFFFFFFFFFFFFFFFFFssFFFFFFFFFFFFFFFFFF. [ 24%] xbout/tests/test_fastoutput.py . [ 24%] xbout/tests/test_geometries.py .. [ 24%] xbout/tests/test_grid.py ..... [ 25%] xbout/tests/test_init.py . [ 25%] xbout/tests/test_load.py ..........................FFFFFFFFFFFFsFF....FF [ 31%] Fs...................................................................... [ 40%] ............ [ 42%] xbout/tests/test_plot.py FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF [ 47%] FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF [ 57%] FFFFFFFFFFFFFFFFFFFFFFFFF [ 60%] xbout/tests/test_region.py FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF [ 65%] FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF [ 74%] FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF [ 83%] FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF [ 92%] FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF [ 98%] xbout/tests/test_utils.py ............. [100%] ==================================== ERRORS ==================================== _________________ ERROR at setup of TestAnimate.test_animate2D _________________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390126bb80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate2D_controls_arg[controls0] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390352cd00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate2D_controls_arg[controls1] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901513c40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate2D_controls_arg[controls2] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901ad31c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate2D_controls_arg[controls3] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901e3e440> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate2D_controls_arg[controls4] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901dab160> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate2D_controls_arg[controls5] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902a56f80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _________________ ERROR at setup of TestAnimate.test_animate1D _________________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390127a860> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate1D_controls_arg[controls0] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39015f8460> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate1D_controls_arg[controls1] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901bd7100> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate1D_controls_arg[controls2] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901dab820> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate1D_controls_arg[controls3] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901d50040> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate1D_controls_arg[controls4] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901d8e740> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ ERROR at setup of TestAnimate.test_animate1D_controls_arg[controls5] _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390140be80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _______________ ERROR at setup of TestAnimate.test_animate_list ________________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390138fac0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________ ERROR at setup of TestAnimate.test_animate_list_1d_default __________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901c26860> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _________ ERROR at setup of TestAnimate.test_animate_list_1d_multiline _________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901e37a60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _________ ERROR at setup of TestAnimate.test_animate_list_animate_over _________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902f368c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________ ERROR at setup of TestAnimate.test_animate_list_save_as ____________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901a26da0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____________ ERROR at setup of TestAnimate.test_animate_list_fps ______________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390127a080> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________ ERROR at setup of TestAnimate.test_animate_list_nrows _____________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901bd4460> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________ ERROR at setup of TestAnimate.test_animate_list_ncols _____________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901a802e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____ ERROR at setup of TestAnimate.test_animate_list_not_enough_nrowsncols _____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390121c040> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _______ ERROR at setup of TestAnimate.test_animate_list_subplots_adjust ________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902a1f760> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____________ ERROR at setup of TestAnimate.test_animate_list_vmin _____________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901cc7fa0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________ ERROR at setup of TestAnimate.test_animate_list_vmin_list ___________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390168b880> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____________ ERROR at setup of TestAnimate.test_animate_list_vmax _____________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901e31360> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________ ERROR at setup of TestAnimate.test_animate_list_vmax_list ___________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390138fe80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________ ERROR at setup of TestAnimate.test_animate_list_logscale ___________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901d124a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ________ ERROR at setup of TestAnimate.test_animate_list_logscale_float ________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901409780> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ________ ERROR at setup of TestAnimate.test_animate_list_logscale_list _________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901a927a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _________ ERROR at setup of TestAnimate.test_animate_list_titles_list __________ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902f6d3c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___ ERROR at setup of TestAnimate.test_animate_list_controls_arg[controls0] ____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901670be0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___ ERROR at setup of TestAnimate.test_animate_list_controls_arg[controls1] ____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901e241c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___ ERROR at setup of TestAnimate.test_animate_list_controls_arg[controls2] ____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902162260> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___ ERROR at setup of TestAnimate.test_animate_list_controls_arg[controls3] ____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902eb1720> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___ ERROR at setup of TestAnimate.test_animate_list_controls_arg[controls4] ____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901ba6b60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___ ERROR at setup of TestAnimate.test_animate_list_controls_arg[controls5] ____ tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') @pytest.fixture def create_test_file(tmp_path_factory): # Create temp dir for output of animate1D/2D save_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for ds, file_name in zip(ds_list, file_list): ds.to_netcdf(save_dir.joinpath(file_name)) with pytest.warns(UserWarning): > ds = open_boutdataset(save_dir.joinpath("BOUT.dmp.*.nc")) # Open test data xbout/tests/test_animate.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39013b6ec0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError =================================== FAILURES =================================== ________________ TestAccuracyAgainstOldCollect.test_single_file ________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') def test_single_file(self, tmp_path_factory): # Create temp directory for files test_dir = tmp_path_factory.mktemp("test_data") # Generate some test data generated_ds = create_bout_ds(syn_data_type="linear") generated_ds.to_netcdf(test_dir.joinpath("BOUT.dmp.0.nc")) var = "n" expected = old_collect(var, path=test_dir, xguards=True, yguards=False) # Test against new standard - open_boutdataset with pytest.warns(UserWarning): > ds = open_boutdataset(test_dir.joinpath("BOUT.dmp.0.nc")) xbout/tests/test_against_collect.py:26: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39030fa200> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- mxsub = 2 mysub = 4 mz = 7 nxpe = 1, nype = 1, npes = 1 Reading from 0: [0-1][0-3] -> [0-1][0-3] __________ TestAccuracyAgainstOldCollect.test_multiple_files_along_x ___________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') def test_multiple_files_along_x(self, tmp_path_factory): # Create temp directory for files test_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=1, syn_data_type="linear" ) for temp_ds, file_name in zip(ds_list, file_list): temp_ds.to_netcdf(test_dir.joinpath(file_name)) var = "n" expected = old_collect(var, path=test_dir, prefix="BOUT.dmp", xguards=True) # Test against new standard - open_boutdataset with pytest.warns(UserWarning): > ds = open_boutdataset(test_dir.joinpath("BOUT.dmp.*.nc")) xbout/tests/test_against_collect.py:54: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902e22920> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- mxsub = 2 mysub = 4 mz = 7 nxpe = 3, nype = 1, npes = 3 Reading from 0: [0-1][0-3] -> [0-1][0-3] Reading from 1: [0-1][0-3] -> [2-3][0-3] Reading from 2: [0-1][0-3] -> [4-5][0-3] __________ TestAccuracyAgainstOldCollect.test_multiple_files_along_y ___________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') def test_multiple_files_along_y(self, tmp_path_factory): # Create temp directory for files test_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=1, nype=3, syn_data_type="linear" ) for temp_ds, file_name in zip(ds_list, file_list): temp_ds.to_netcdf(test_dir.joinpath(file_name)) var = "n" expected = old_collect(var, path=test_dir, prefix="BOUT.dmp", xguards=True) # Test against new standard - .open_boutdataset with pytest.warns(UserWarning): > ds = open_boutdataset(test_dir.joinpath("BOUT.dmp.*.nc")) xbout/tests/test_against_collect.py:82: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901267a60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- mxsub = 2 mysub = 4 mz = 7 nxpe = 1, nype = 3, npes = 3 Reading from 0: [0-1][0-3] -> [0-1][0-3] Reading from 1: [0-1][0-3] -> [0-1][4-7] Reading from 2: [0-1][0-3] -> [0-1][8-11] __________ TestAccuracyAgainstOldCollect.test_multiple_files_along_xy __________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') def test_multiple_files_along_xy(self, tmp_path_factory): # Create temp directory for files test_dir = tmp_path_factory.mktemp("test_data") # Generate some test data ds_list, file_list = create_bout_ds_list( "BOUT.dmp", nxpe=3, nype=3, syn_data_type="linear" ) for temp_ds, file_name in zip(ds_list, file_list): temp_ds.to_netcdf(test_dir.joinpath(file_name)) var = "n" expected = old_collect(var, path=test_dir, prefix="BOUT.dmp", xguards=True) # Test against new standard - .open_boutdataset with pytest.warns(UserWarning): > ds = open_boutdataset(test_dir.joinpath("BOUT.dmp.*.nc")) xbout/tests/test_against_collect.py:110: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901671060> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- mxsub = 2 mysub = 4 mz = 7 nxpe = 3, nype = 3, npes = 9 Reading from 0: [0-1][0-3] -> [0-1][0-3] Reading from 1: [0-1][0-3] -> [2-3][0-3] Reading from 2: [0-1][0-3] -> [4-5][0-3] Reading from 3: [0-1][0-3] -> [0-1][4-7] Reading from 4: [0-1][0-3] -> [2-3][4-7] Reading from 5: [0-1][0-3] -> [4-5][4-7] Reading from 6: [0-1][0-3] -> [0-1][8-11] Reading from 7: [0-1][0-3] -> [2-3][8-11] Reading from 8: [0-1][0-3] -> [4-5][8-11] _________________ TestAccuracyAgainstOldCollect.test_metadata __________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') def test_metadata(self, tmp_path_factory): # Create temp directory for files test_dir = tmp_path_factory.mktemp("test_data") # Generate some test data generated_ds = create_bout_ds(syn_data_type="linear") generated_ds.to_netcdf(test_dir.joinpath("BOUT.dmp.0.nc")) with pytest.warns(UserWarning): > ds = open_boutdataset(test_dir.joinpath("BOUT.dmp.*.nc")) xbout/tests/test_against_collect.py:131: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390168d360> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________________ TestBoutDataArrayMethods.test_to_dataset ___________________ self = bout_xyt_example_files = def test_to_dataset(self, bout_xyt_example_files): dataset_list = bout_xyt_example_files(None, nxpe=3, nype=4, nt=1) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:20: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39032afdc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _________ TestBoutDataArrayMethods.test_remove_yboundaries[False-0-0] __________ self = bout_xyt_example_files = mxg = 0, myg = 0, remove_extra_upper = False @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) @pytest.mark.parametrize( "remove_extra_upper", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_remove_yboundaries( self, bout_xyt_example_files, mxg, myg, remove_extra_upper ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:50: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901afb520> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _________ TestBoutDataArrayMethods.test_remove_yboundaries[False-0-2] __________ self = bout_xyt_example_files = mxg = 2, myg = 0, remove_extra_upper = False @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) @pytest.mark.parametrize( "remove_extra_upper", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_remove_yboundaries( self, bout_xyt_example_files, mxg, myg, remove_extra_upper ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:50: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39021cb580> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _________ TestBoutDataArrayMethods.test_remove_yboundaries[False-2-0] __________ self = bout_xyt_example_files = mxg = 0, myg = 2, remove_extra_upper = False @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) @pytest.mark.parametrize( "remove_extra_upper", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_remove_yboundaries( self, bout_xyt_example_files, mxg, myg, remove_extra_upper ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:50: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901d57520> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _________ TestBoutDataArrayMethods.test_remove_yboundaries[False-2-2] __________ self = bout_xyt_example_files = mxg = 2, myg = 2, remove_extra_upper = False @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) @pytest.mark.parametrize( "remove_extra_upper", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_remove_yboundaries( self, bout_xyt_example_files, mxg, myg, remove_extra_upper ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:50: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902a1dea0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions __________ TestBoutDataArrayMethods.test_remove_yboundaries[True-0-0] __________ self = bout_xyt_example_files = mxg = 0, myg = 0, remove_extra_upper = True @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) @pytest.mark.parametrize( "remove_extra_upper", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_remove_yboundaries( self, bout_xyt_example_files, mxg, myg, remove_extra_upper ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:50: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901e260e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions __________ TestBoutDataArrayMethods.test_remove_yboundaries[True-0-2] __________ self = bout_xyt_example_files = mxg = 2, myg = 0, remove_extra_upper = True @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) @pytest.mark.parametrize( "remove_extra_upper", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_remove_yboundaries( self, bout_xyt_example_files, mxg, myg, remove_extra_upper ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:50: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39012468c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions __________ TestBoutDataArrayMethods.test_remove_yboundaries[True-2-0] __________ self = bout_xyt_example_files = mxg = 0, myg = 2, remove_extra_upper = True @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) @pytest.mark.parametrize( "remove_extra_upper", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_remove_yboundaries( self, bout_xyt_example_files, mxg, myg, remove_extra_upper ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:50: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902f9bdc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions __________ TestBoutDataArrayMethods.test_remove_yboundaries[True-2-2] __________ self = bout_xyt_example_files = mxg = 2, myg = 2, remove_extra_upper = True @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) @pytest.mark.parametrize( "remove_extra_upper", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_remove_yboundaries( self, bout_xyt_example_files, mxg, myg, remove_extra_upper ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:50: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390149b580> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ___________ TestBoutDataArrayMethods.test_to_field_aligned[False-6] ____________ self = bout_xyt_example_files = nz = 6, permute_dims = False @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:107: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901e97340> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________ TestBoutDataArrayMethods.test_to_field_aligned[False-7] ____________ self = bout_xyt_example_files = nz = 7, permute_dims = False @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:107: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901eab640> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________ TestBoutDataArrayMethods.test_to_field_aligned[False-8] ____________ self = bout_xyt_example_files = nz = 8, permute_dims = False @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:107: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390166de40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________ TestBoutDataArrayMethods.test_to_field_aligned[False-9] ____________ self = bout_xyt_example_files = nz = 9, permute_dims = False @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:107: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39016b74c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________ TestBoutDataArrayMethods.test_to_field_aligned[True-6] ____________ self = bout_xyt_example_files = nz = 6, permute_dims = True @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:107: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901c741c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________ TestBoutDataArrayMethods.test_to_field_aligned[True-7] ____________ self = bout_xyt_example_files = nz = 7, permute_dims = True @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:107: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901469d20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________ TestBoutDataArrayMethods.test_to_field_aligned[True-8] ____________ self = bout_xyt_example_files = nz = 8, permute_dims = True @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:107: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39021d4220> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________ TestBoutDataArrayMethods.test_to_field_aligned[True-9] ____________ self = bout_xyt_example_files = nz = 9, permute_dims = True @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:107: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39021edcc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________ TestBoutDataArrayMethods.test_to_field_aligned_dask[False] __________ self = bout_xyt_example_files = permute_dims = False @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned_dask(self, bout_xyt_example_files, permute_dims): nz = 6 dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:216: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39021cada0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________ TestBoutDataArrayMethods.test_to_field_aligned_dask[True] ___________ self = bout_xyt_example_files = permute_dims = True @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned_dask(self, bout_xyt_example_files, permute_dims): nz = 6 dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:216: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902141ea0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________ TestBoutDataArrayMethods.test_from_field_aligned[False-6] ___________ self = bout_xyt_example_files = nz = 6, permute_dims = False @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:337: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902145ae0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________ TestBoutDataArrayMethods.test_from_field_aligned[False-7] ___________ self = bout_xyt_example_files = nz = 7, permute_dims = False @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:337: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901b60b80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________ TestBoutDataArrayMethods.test_from_field_aligned[False-8] ___________ self = bout_xyt_example_files = nz = 8, permute_dims = False @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:337: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901afb580> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________ TestBoutDataArrayMethods.test_from_field_aligned[False-9] ___________ self = bout_xyt_example_files = nz = 9, permute_dims = False @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:337: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901268d00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________ TestBoutDataArrayMethods.test_from_field_aligned[True-6] ___________ self = bout_xyt_example_files = nz = 6, permute_dims = True @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:337: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3903285240> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________ TestBoutDataArrayMethods.test_from_field_aligned[True-7] ___________ self = bout_xyt_example_files = nz = 7, permute_dims = True @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:337: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902e6a4a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________ TestBoutDataArrayMethods.test_from_field_aligned[True-8] ___________ self = bout_xyt_example_files = nz = 8, permute_dims = True @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:337: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390317e9e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________ TestBoutDataArrayMethods.test_from_field_aligned[True-9] ___________ self = bout_xyt_example_files = nz = 9, permute_dims = True @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned(self, bout_xyt_example_files, nz, permute_dims): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:337: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902a1eb00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __ TestBoutDataArrayMethods.test_to_field_aligned_staggered[False-CELL_XLOW] ___ self = bout_xyt_example_files = stag_location = 'CELL_XLOW', permute_dims = False @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:447: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39016279a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __ TestBoutDataArrayMethods.test_to_field_aligned_staggered[False-CELL_YLOW] ___ self = bout_xyt_example_files = stag_location = 'CELL_YLOW', permute_dims = False @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:447: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901609660> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __ TestBoutDataArrayMethods.test_to_field_aligned_staggered[False-CELL_ZLOW] ___ self = bout_xyt_example_files = stag_location = 'CELL_ZLOW', permute_dims = False @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:447: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901ea80a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___ TestBoutDataArrayMethods.test_to_field_aligned_staggered[True-CELL_XLOW] ___ self = bout_xyt_example_files = stag_location = 'CELL_XLOW', permute_dims = True @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:447: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901e956c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___ TestBoutDataArrayMethods.test_to_field_aligned_staggered[True-CELL_YLOW] ___ self = bout_xyt_example_files = stag_location = 'CELL_YLOW', permute_dims = True @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:447: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901b92560> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___ TestBoutDataArrayMethods.test_to_field_aligned_staggered[True-CELL_ZLOW] ___ self = bout_xyt_example_files = stag_location = 'CELL_ZLOW', permute_dims = True @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_to_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:447: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39014f1c00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _ TestBoutDataArrayMethods.test_from_field_aligned_staggered[False-CELL_XLOW] __ self = bout_xyt_example_files = stag_location = 'CELL_XLOW', permute_dims = False @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:510: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901afa800> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _ TestBoutDataArrayMethods.test_from_field_aligned_staggered[False-CELL_YLOW] __ self = bout_xyt_example_files = stag_location = 'CELL_YLOW', permute_dims = False @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:510: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902a33e80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _ TestBoutDataArrayMethods.test_from_field_aligned_staggered[False-CELL_ZLOW] __ self = bout_xyt_example_files = stag_location = 'CELL_ZLOW', permute_dims = False @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:510: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902f3c2e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __ TestBoutDataArrayMethods.test_from_field_aligned_staggered[True-CELL_XLOW] __ self = bout_xyt_example_files = stag_location = 'CELL_XLOW', permute_dims = True @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:510: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902fa6920> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __ TestBoutDataArrayMethods.test_from_field_aligned_staggered[True-CELL_YLOW] __ self = bout_xyt_example_files = stag_location = 'CELL_YLOW', permute_dims = True @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:510: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902f20fa0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __ TestBoutDataArrayMethods.test_from_field_aligned_staggered[True-CELL_ZLOW] __ self = bout_xyt_example_files = stag_location = 'CELL_ZLOW', permute_dims = True @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) @pytest.mark.parametrize( "permute_dims", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_from_field_aligned_staggered( self, bout_xyt_example_files, stag_location, permute_dims ): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:510: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901b73760> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ________ TestBoutDataArrayMethods.test_interpolate_parallel_region_core ________ self = bout_xyt_example_files = @pytest.mark.long def test_interpolate_parallel_region_core(self, bout_xyt_example_files): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 16, 3), nxpe=1, nype=1, nt=1, grid="grid", guards={"y": 2}, topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:577: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39021ca2c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions __ TestBoutDataArrayMethods.test_interpolate_parallel_region_core_change_n[2] __ self = bout_xyt_example_files = res_factor = 2 @pytest.mark.parametrize( "res_factor", [ pytest.param(2, marks=pytest.mark.long), 3, pytest.param(7, marks=pytest.mark.long), pytest.param(18, marks=pytest.mark.long), ], ) def test_interpolate_parallel_region_core_change_n( self, bout_xyt_example_files, res_factor ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 16, 3), nxpe=1, nype=1, nt=1, grid="grid", guards={"y": 2}, topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:635: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39021ef340> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions __ TestBoutDataArrayMethods.test_interpolate_parallel_region_core_change_n[3] __ self = bout_xyt_example_files = res_factor = 3 @pytest.mark.parametrize( "res_factor", [ pytest.param(2, marks=pytest.mark.long), 3, pytest.param(7, marks=pytest.mark.long), pytest.param(18, marks=pytest.mark.long), ], ) def test_interpolate_parallel_region_core_change_n( self, bout_xyt_example_files, res_factor ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 16, 3), nxpe=1, nype=1, nt=1, grid="grid", guards={"y": 2}, topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:635: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901be68c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions __ TestBoutDataArrayMethods.test_interpolate_parallel_region_core_change_n[7] __ self = bout_xyt_example_files = res_factor = 7 @pytest.mark.parametrize( "res_factor", [ pytest.param(2, marks=pytest.mark.long), 3, pytest.param(7, marks=pytest.mark.long), pytest.param(18, marks=pytest.mark.long), ], ) def test_interpolate_parallel_region_core_change_n( self, bout_xyt_example_files, res_factor ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 16, 3), nxpe=1, nype=1, nt=1, grid="grid", guards={"y": 2}, topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:635: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390146a680> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDataArrayMethods.test_interpolate_parallel_region_core_change_n[18] __ self = bout_xyt_example_files = res_factor = 18 @pytest.mark.parametrize( "res_factor", [ pytest.param(2, marks=pytest.mark.long), 3, pytest.param(7, marks=pytest.mark.long), pytest.param(18, marks=pytest.mark.long), ], ) def test_interpolate_parallel_region_core_change_n( self, bout_xyt_example_files, res_factor ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 16, 3), nxpe=1, nype=1, nt=1, grid="grid", guards={"y": 2}, topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:635: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901abe1a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestBoutDataArrayMethods.test_interpolate_parallel_region_sol _________ self = bout_xyt_example_files = @pytest.mark.long def test_interpolate_parallel_region_sol(self, bout_xyt_example_files): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 16, 3), nxpe=1, nype=1, nt=1, grid="grid", guards={"y": 2}, topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:687: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39016b5780> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____ TestBoutDataArrayMethods.test_interpolate_parallel_region_singlenull _____ self = bout_xyt_example_files = def test_interpolate_parallel_region_singlenull(self, bout_xyt_example_files): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 16, 3), nxpe=1, nype=3, nt=1, grid="grid", guards={"y": 2}, topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:734: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39019252a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestBoutDataArrayMethods.test_interpolate_parallel ______________ self = bout_xyt_example_files = def test_interpolate_parallel(self, bout_xyt_example_files): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 16, 3), nxpe=1, nype=3, nt=1, grid="grid", guards={"y": 2}, topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:806: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902162e00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestBoutDataArrayMethods.test_interpolate_parallel_sol ____________ self = bout_xyt_example_files = def test_interpolate_parallel_sol(self, bout_xyt_example_files): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 16, 3), nxpe=1, nype=1, nt=1, grid="grid", guards={"y": 2}, topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:860: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901e272e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______ TestBoutDataArrayMethods.test_interpolate_parallel_toroidal_points ______ self = bout_xyt_example_files = def test_interpolate_parallel_toroidal_points(self, bout_xyt_example_files): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 16, 3), nxpe=1, nype=3, nt=1, grid="grid", guards={"y": 2}, topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:912: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901b44b80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ___ TestBoutDataArrayMethods.test_interpolate_parallel_toroidal_points_list ____ self = bout_xyt_example_files = def test_interpolate_parallel_toroidal_points_list(self, bout_xyt_example_files): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 16, 3), nxpe=1, nype=3, nt=1, grid="grid", guards={"y": 2}, topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:937: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901c85ea0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestBoutDataArrayMethods.test_interpolate_to_cartesian ____________ self = bout_xyt_example_files = def test_interpolate_to_cartesian(self, bout_xyt_example_files): dataset_list = bout_xyt_example_files( None, lengths=(2, 16, 17, 18), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:959: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902141f60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________ TestBoutDataArrayMethods.test_add_cartesian_coordinates ____________ self = bout_xyt_example_files = def test_add_cartesian_coordinates(self, bout_xyt_example_files): dataset_list = bout_xyt_example_files(None, nxpe=1, nype=1, nt=1) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataarray.py:999: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901b60b20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________________ TestBoutDataArrayMethods.test_ddx _______________________ self = bout_xyt_example_files = def test_ddx(self, bout_xyt_example_files): nx = 64 dataset_list = bout_xyt_example_files( None, lengths=(2, nx, 4, 3), nxpe=1, nype=1, ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, ) xbout/tests/test_boutdataarray.py:1044: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902f3f8e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________________ TestBoutDataArrayMethods.test_ddy _______________________ self = bout_xyt_example_files = def test_ddy(self, bout_xyt_example_files): ny = 64 dataset_list, gridfilepath = bout_xyt_example_files( None, lengths=(2, 3, ny, 4), nxpe=1, nype=1, grid="grid", ) > ds = open_boutdataset( datapath=dataset_list, geometry="toroidal", gridfilepath=gridfilepath ) xbout/tests/test_boutdataarray.py:1078: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902a30340> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________________ TestBoutDataArrayMethods.test_ddz _______________________ self = bout_xyt_example_files = def test_ddz(self, bout_xyt_example_files): dataset_list = bout_xyt_example_files( None, lengths=(2, 3, 4, 64), nxpe=1, nype=1, ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, ) xbout/tests/test_boutdataarray.py:1109: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390179ec20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____________ TestBoutDataArrayMethods.test_derivatives_doublenull _____________ self = bout_xyt_example_files = def test_derivatives_doublenull(self, bout_xyt_example_files): # Check function does not error on double-null topology dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": 2, "y": 2}, topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataarray.py:1141: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901d545e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions __________________ TestBoutDatasetIsXarrayDataset.test_concat __________________ self = bout_xyt_example_files = def test_concat(self, bout_xyt_example_files): dataset_list1 = bout_xyt_example_files(None, nxpe=3, nype=4, nt=1) with pytest.warns(UserWarning): > bd1 = open_boutdataset( datapath=dataset_list1, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:36: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902f731c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________________ TestBoutDatasetIsXarrayDataset.test_isel ___________________ self = bout_xyt_example_files = def test_isel(self, bout_xyt_example_files): dataset_list = bout_xyt_example_files(None, nxpe=1, nype=1, nt=1) with pytest.warns(UserWarning): > bd = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:50: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901e26bc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ________________ TestBoutDatasetMethods.test_get_field_aligned _________________ self = bout_xyt_example_files = def test_get_field_aligned(self, bout_xyt_example_files): dataset_list = bout_xyt_example_files(None, nxpe=3, nype=4, nt=1) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:62: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902eb3e20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____________ TestBoutDatasetMethods.test_remove_yboundaries[0-0] ______________ self = bout_xyt_example_files = mxg = 0, myg = 0 @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) def test_remove_yboundaries(self, bout_xyt_example_files, mxg, myg): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataset.py:103: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39030f86a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestBoutDatasetMethods.test_remove_yboundaries[0-2] ______________ self = bout_xyt_example_files = mxg = 2, myg = 0 @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) def test_remove_yboundaries(self, bout_xyt_example_files, mxg, myg): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataset.py:103: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901be0940> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestBoutDatasetMethods.test_remove_yboundaries[2-0] ______________ self = bout_xyt_example_files = mxg = 0, myg = 2 @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) def test_remove_yboundaries(self, bout_xyt_example_files, mxg, myg): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataset.py:103: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390135f580> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestBoutDatasetMethods.test_remove_yboundaries[2-2] ______________ self = bout_xyt_example_files = mxg = 2, myg = 2 @pytest.mark.parametrize("mxg", [0, pytest.param(2, marks=pytest.mark.long)]) @pytest.mark.parametrize("myg", [pytest.param(0, marks=pytest.mark.long), 2]) def test_remove_yboundaries(self, bout_xyt_example_files, mxg, myg): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=6, nt=1, grid="grid", guards={"x": mxg, "y": myg}, topology="connected-double-null", syn_data_type="linear", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_yboundaries=True, ) xbout/tests/test_boutdataset.py:103: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3903257580> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestBoutDatasetMethods.test_to_field_aligned[6] ________________ self = bout_xyt_example_files = nz = 6 @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) def test_to_field_aligned(self, bout_xyt_example_files, nz): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:163: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901acb7c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _______________ TestBoutDatasetMethods.test_to_field_aligned[7] ________________ self = bout_xyt_example_files = nz = 7 @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) def test_to_field_aligned(self, bout_xyt_example_files, nz): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:163: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901a32c20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _______________ TestBoutDatasetMethods.test_to_field_aligned[8] ________________ self = bout_xyt_example_files = nz = 8 @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) def test_to_field_aligned(self, bout_xyt_example_files, nz): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:163: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901a5b640> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _______________ TestBoutDatasetMethods.test_to_field_aligned[9] ________________ self = bout_xyt_example_files = nz = 9 @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) def test_to_field_aligned(self, bout_xyt_example_files, nz): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:163: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39014f11e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________ TestBoutDatasetMethods.test_to_field_aligned_dask _______________ self = bout_xyt_example_files = def test_to_field_aligned_dask(self, bout_xyt_example_files): nz = 6 dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:269: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39014dd660> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________ TestBoutDatasetMethods.test_from_field_aligned[6] _______________ self = bout_xyt_example_files = nz = 6 @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) def test_from_field_aligned(self, bout_xyt_example_files, nz): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:389: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901a6e860> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________ TestBoutDatasetMethods.test_from_field_aligned[7] _______________ self = bout_xyt_example_files = nz = 7 @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) def test_from_field_aligned(self, bout_xyt_example_files, nz): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:389: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902f37d60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________ TestBoutDatasetMethods.test_from_field_aligned[8] _______________ self = bout_xyt_example_files = nz = 8 @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) def test_from_field_aligned(self, bout_xyt_example_files, nz): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:389: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390168cca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________ TestBoutDatasetMethods.test_from_field_aligned[9] _______________ self = bout_xyt_example_files = nz = 9 @pytest.mark.parametrize( "nz", [ pytest.param(6, marks=pytest.mark.long), 7, pytest.param(8, marks=pytest.mark.long), pytest.param(9, marks=pytest.mark.long), ], ) def test_from_field_aligned(self, bout_xyt_example_files, nz): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, nz), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:389: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901bd7820> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______ TestBoutDatasetMethods.test_to_field_aligned_staggered[CELL_XLOW] _______ self = bout_xyt_example_files = stag_location = 'CELL_XLOW' @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) def test_to_field_aligned_staggered(self, bout_xyt_example_files, stag_location): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:494: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902fbe6e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______ TestBoutDatasetMethods.test_to_field_aligned_staggered[CELL_YLOW] _______ self = bout_xyt_example_files = stag_location = 'CELL_YLOW' @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) def test_to_field_aligned_staggered(self, bout_xyt_example_files, stag_location): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:494: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39031add20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______ TestBoutDatasetMethods.test_to_field_aligned_staggered[CELL_ZLOW] _______ self = bout_xyt_example_files = stag_location = 'CELL_ZLOW' @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) def test_to_field_aligned_staggered(self, bout_xyt_example_files, stag_location): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:494: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901d52320> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ TestBoutDatasetMethods.test_from_field_aligned_staggered[CELL_XLOW] ______ self = bout_xyt_example_files = stag_location = 'CELL_XLOW' @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) def test_from_field_aligned_staggered(self, bout_xyt_example_files, stag_location): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:553: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901a32aa0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ TestBoutDatasetMethods.test_from_field_aligned_staggered[CELL_YLOW] ______ self = bout_xyt_example_files = stag_location = 'CELL_YLOW' @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) def test_from_field_aligned_staggered(self, bout_xyt_example_files, stag_location): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:553: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390324cbe0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ TestBoutDatasetMethods.test_from_field_aligned_staggered[CELL_ZLOW] ______ self = bout_xyt_example_files = stag_location = 'CELL_ZLOW' @pytest.mark.parametrize("stag_location", ["CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"]) def test_from_field_aligned_staggered(self, bout_xyt_example_files, stag_location): dataset_list = bout_xyt_example_files( None, lengths=(3, 3, 4, 8), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:553: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901a9ca60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39012a4460> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901baefe0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39019b9420> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39017ea260> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39021a5840> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901ae1960> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901f40ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901f18520> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901fa63e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902b9d300> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39020ca080> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39020d6980> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902044160> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39021a2b60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390324df60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate0-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True vars_to_interpolate = ('n', 'T') @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902f84ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902a84e20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902acdfc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902204ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390222c5e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902b9da80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902b8d540> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39021a6e00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902116680> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39020b03a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902031f00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901ff0ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902bc0820> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902205fc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390160b7c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902f80400> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_parallel[vars_to_interpolate1-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True vars_to_interpolate = Ellipsis @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "vars_to_interpolate", [("n", "T"), pytest.param(..., marks=pytest.mark.long)] ) def test_interpolate_parallel( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, vars_to_interpolate, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_boutdataset.py:652: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902f043a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______ TestBoutDatasetMethods.test_interpolate_parallel_all_variables_arg ______ self = bout_xyt_example_files = def test_interpolate_parallel_all_variables_arg(self, bout_xyt_example_files): # Check that passing 'variables=...' to interpolate_parallel() does actually # interpolate all the variables dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=1, nype=1, nt=1, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal" ) xbout/tests/test_boutdataset.py:1108: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390157a320> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ___________ TestBoutDatasetMethods.test_interpolate_parallel_limiter ___________ self = bout_xyt_example_files = def test_interpolate_parallel_limiter( self, bout_xyt_example_files, ): # This test checks that the regions created in the new high-resolution Dataset by # interpolate_parallel are correct. # This test does not test the accuracy of the parallel interpolation (there are # other tests for that). # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards={"x": 2, "y": 2}, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=True, keep_yboundaries=False, ) xbout/tests/test_boutdataset.py:1163: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902baec80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestBoutDatasetMethods.test_integrate_midpoints_slab _____________ self = bout_xyt_example_files = def test_integrate_midpoints_slab(self, bout_xyt_example_files): # Create data dataset_list = bout_xyt_example_files( None, lengths=(4, 100, 110, 120), nxpe=1, nype=1, nt=1, syn_data_type=1 ) > ds = open_boutdataset(dataset_list) xbout/tests/test_boutdataset.py:1193: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902b875e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____ TestBoutDatasetMethods.test_integrate_midpoints_salpha[CELL_CENTRE] ______ self = bout_xyt_example_files = location = 'CELL_CENTRE' @pytest.mark.parametrize( "location", ["CELL_CENTRE", "CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"] ) def test_integrate_midpoints_salpha(self, bout_xyt_example_files, location): # Create data nx = 100 ny = 110 nz = 120 dataset_list = bout_xyt_example_files( None, lengths=(4, nx, ny, nz), nxpe=1, nype=1, nt=1, syn_data_type=1, guards={"x": 2, "y": 2}, ) > ds = open_boutdataset(dataset_list) xbout/tests/test_boutdataset.py:1387: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902ba9a80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______ TestBoutDatasetMethods.test_integrate_midpoints_salpha[CELL_XLOW] _______ self = bout_xyt_example_files = location = 'CELL_XLOW' @pytest.mark.parametrize( "location", ["CELL_CENTRE", "CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"] ) def test_integrate_midpoints_salpha(self, bout_xyt_example_files, location): # Create data nx = 100 ny = 110 nz = 120 dataset_list = bout_xyt_example_files( None, lengths=(4, nx, ny, nz), nxpe=1, nype=1, nt=1, syn_data_type=1, guards={"x": 2, "y": 2}, ) > ds = open_boutdataset(dataset_list) xbout/tests/test_boutdataset.py:1387: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39019fa740> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______ TestBoutDatasetMethods.test_integrate_midpoints_salpha[CELL_YLOW] _______ self = bout_xyt_example_files = location = 'CELL_YLOW' @pytest.mark.parametrize( "location", ["CELL_CENTRE", "CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"] ) def test_integrate_midpoints_salpha(self, bout_xyt_example_files, location): # Create data nx = 100 ny = 110 nz = 120 dataset_list = bout_xyt_example_files( None, lengths=(4, nx, ny, nz), nxpe=1, nype=1, nt=1, syn_data_type=1, guards={"x": 2, "y": 2}, ) > ds = open_boutdataset(dataset_list) xbout/tests/test_boutdataset.py:1387: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902aff4c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______ TestBoutDatasetMethods.test_integrate_midpoints_salpha[CELL_ZLOW] _______ self = bout_xyt_example_files = location = 'CELL_ZLOW' @pytest.mark.parametrize( "location", ["CELL_CENTRE", "CELL_XLOW", "CELL_YLOW", "CELL_ZLOW"] ) def test_integrate_midpoints_salpha(self, bout_xyt_example_files, location): # Create data nx = 100 ny = 110 nz = 120 dataset_list = bout_xyt_example_files( None, lengths=(4, nx, ny, nz), nxpe=1, nype=1, nt=1, syn_data_type=1, guards={"x": 2, "y": 2}, ) > ds = open_boutdataset(dataset_list) xbout/tests/test_boutdataset.py:1387: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902b0d180> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________ TestBoutDatasetMethods.test_interpolate_from_unstructured ___________ self = bout_xyt_example_files = def test_interpolate_from_unstructured(self, bout_xyt_example_files): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, grid="grid", topology="upper-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal" ) xbout/tests/test_boutdataset.py:1733: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901a5bee0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestBoutDatasetMethods.test_interpolate_from_unstructured_unstructured_output _ self = bout_xyt_example_files = def test_interpolate_from_unstructured_unstructured_output( self, bout_xyt_example_files ): dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, grid="grid", topology="lower-disconnected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal" ) xbout/tests/test_boutdataset.py:1784: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902bee920> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestBoutDatasetMethods.test_interpolate_to_cartesian _____________ self = bout_xyt_example_files = def test_interpolate_to_cartesian(self, bout_xyt_example_files): dataset_list = bout_xyt_example_files( None, lengths=(2, 16, 17, 18), nxpe=1, nype=1, nt=1 ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:1842: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902169300> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________ TestBoutDatasetMethods.test_add_cartesian_coordinates _____________ self = bout_xyt_example_files = def test_add_cartesian_coordinates(self, bout_xyt_example_files): dataset_list = bout_xyt_example_files(None, nxpe=1, nype=1, nt=1) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=dataset_list, inputfilepath=None, keep_xboundaries=False ) xbout/tests/test_boutdataset.py:1883: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902153b80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________________________ TestSave.test_save_all ____________________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = def test_save_all(self, tmp_path_factory, bout_xyt_example_files): # Create data path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=5, nt=1, write_to_disk=True ) # Load it as a boutdataset with pytest.warns(UserWarning): > original = open_boutdataset(datapath=path, inputfilepath=None) xbout/tests/test_boutdataset.py:1953: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902bdd300> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ________________________ TestSave.test_reload_all[None] ________________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = geometry = None @pytest.mark.parametrize("geometry", [None, "toroidal"]) def test_reload_all(self, tmp_path_factory, bout_xyt_example_files, geometry): # Create data path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=5, nt=1, grid="grid", write_to_disk=True ) gridpath = path.parent.joinpath("grid.nc") # Load it as a boutdataset if geometry is None: with pytest.warns(UserWarning): > original = open_boutdataset( datapath=path, inputfilepath=None, geometry=geometry, gridfilepath=None if geometry is None else gridpath, ) xbout/tests/test_boutdataset.py:1978: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902ba8ac0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________________ TestSave.test_reload_all[toroidal] ______________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = geometry = 'toroidal' @pytest.mark.parametrize("geometry", [None, "toroidal"]) def test_reload_all(self, tmp_path_factory, bout_xyt_example_files, geometry): # Create data path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=5, nt=1, grid="grid", write_to_disk=True ) gridpath = path.parent.joinpath("grid.nc") # Load it as a boutdataset if geometry is None: with pytest.warns(UserWarning): original = open_boutdataset( datapath=path, inputfilepath=None, geometry=geometry, gridfilepath=None if geometry is None else gridpath, ) else: > original = open_boutdataset( datapath=path, inputfilepath=None, geometry=geometry, gridfilepath=None if geometry is None else gridpath, ) xbout/tests/test_boutdataset.py:1985: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902162080> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ___________________ TestSave.test_save_dtype[False-float64] ____________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = save_dtype = , separate_vars = False @pytest.mark.parametrize("save_dtype", [np.float64, np.float32]) @pytest.mark.parametrize( "separate_vars", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_save_dtype( self, tmp_path_factory, bout_xyt_example_files, save_dtype, separate_vars ): # Create data path = bout_xyt_example_files( tmp_path_factory, nxpe=1, nype=1, nt=1, write_to_disk=True ) # Load it as a boutdataset with pytest.warns(UserWarning): > original = open_boutdataset(datapath=path, inputfilepath=None) xbout/tests/test_boutdataset.py:2035: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902f80e20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___________________ TestSave.test_save_dtype[False-float32] ____________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = save_dtype = , separate_vars = False @pytest.mark.parametrize("save_dtype", [np.float64, np.float32]) @pytest.mark.parametrize( "separate_vars", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_save_dtype( self, tmp_path_factory, bout_xyt_example_files, save_dtype, separate_vars ): # Create data path = bout_xyt_example_files( tmp_path_factory, nxpe=1, nype=1, nt=1, write_to_disk=True ) # Load it as a boutdataset with pytest.warns(UserWarning): > original = open_boutdataset(datapath=path, inputfilepath=None) xbout/tests/test_boutdataset.py:2035: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902169ba0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________________ TestSave.test_save_dtype[True-float64] ____________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = save_dtype = , separate_vars = True @pytest.mark.parametrize("save_dtype", [np.float64, np.float32]) @pytest.mark.parametrize( "separate_vars", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_save_dtype( self, tmp_path_factory, bout_xyt_example_files, save_dtype, separate_vars ): # Create data path = bout_xyt_example_files( tmp_path_factory, nxpe=1, nype=1, nt=1, write_to_disk=True ) # Load it as a boutdataset with pytest.warns(UserWarning): > original = open_boutdataset(datapath=path, inputfilepath=None) xbout/tests/test_boutdataset.py:2035: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390217c040> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________________ TestSave.test_save_dtype[True-float32] ____________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = save_dtype = , separate_vars = True @pytest.mark.parametrize("save_dtype", [np.float64, np.float32]) @pytest.mark.parametrize( "separate_vars", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_save_dtype( self, tmp_path_factory, bout_xyt_example_files, save_dtype, separate_vars ): # Create data path = bout_xyt_example_files( tmp_path_factory, nxpe=1, nype=1, nt=1, write_to_disk=True ) # Load it as a boutdataset with pytest.warns(UserWarning): > original = open_boutdataset(datapath=path, inputfilepath=None) xbout/tests/test_boutdataset.py:2035: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902b52980> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________________ TestSave.test_save_separate_variables _____________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = def test_save_separate_variables(self, tmp_path_factory, bout_xyt_example_files): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=1, nt=1, write_to_disk=True ) # Load it as a boutdataset with pytest.warns(UserWarning): > original = open_boutdataset(datapath=path, inputfilepath=None) xbout/tests/test_boutdataset.py:2063: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902e70be0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ________________ TestSave.test_reload_separate_variables[None] _________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = geometry = None @pytest.mark.parametrize("geometry", [None, "toroidal"]) def test_reload_separate_variables( self, tmp_path_factory, bout_xyt_example_files, geometry ): if geometry is not None: grid = "grid" else: grid = None path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=1, nt=1, grid=grid, write_to_disk=True ) if grid is not None: gridpath = path.parent.joinpath("grid.nc") else: gridpath = None # Load it as a boutdataset if geometry is None: with pytest.warns(UserWarning): > original = open_boutdataset( datapath=path, inputfilepath=None, geometry=geometry, gridfilepath=gridpath, ) xbout/tests/test_boutdataset.py:2104: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39014f3100> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________ TestSave.test_reload_separate_variables[toroidal] _______________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = geometry = 'toroidal' @pytest.mark.parametrize("geometry", [None, "toroidal"]) def test_reload_separate_variables( self, tmp_path_factory, bout_xyt_example_files, geometry ): if geometry is not None: grid = "grid" else: grid = None path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=1, nt=1, grid=grid, write_to_disk=True ) if grid is not None: gridpath = path.parent.joinpath("grid.nc") else: gridpath = None # Load it as a boutdataset if geometry is None: with pytest.warns(UserWarning): original = open_boutdataset( datapath=path, inputfilepath=None, geometry=geometry, gridfilepath=gridpath, ) else: > original = open_boutdataset( datapath=path, inputfilepath=None, geometry=geometry, gridfilepath=gridpath, ) xbout/tests/test_boutdataset.py:2111: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390212d6c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ___________ TestSave.test_reload_separate_variables_time_split[None] ___________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = geometry = None @pytest.mark.parametrize("geometry", [None, "toroidal"]) def test_reload_separate_variables_time_split( self, tmp_path_factory, bout_xyt_example_files, geometry ): if geometry is not None: grid = "grid" else: grid = None path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=1, nt=1, grid=grid, write_to_disk=True ) if grid is not None: gridpath = path.parent.joinpath("grid.nc") else: gridpath = None # Load it as a boutdataset if geometry is None: with pytest.warns(UserWarning): > original = open_boutdataset( datapath=path, inputfilepath=None, geometry=geometry, gridfilepath=gridpath, ) xbout/tests/test_boutdataset.py:2151: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902b01900> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _________ TestSave.test_reload_separate_variables_time_split[toroidal] _________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = geometry = 'toroidal' @pytest.mark.parametrize("geometry", [None, "toroidal"]) def test_reload_separate_variables_time_split( self, tmp_path_factory, bout_xyt_example_files, geometry ): if geometry is not None: grid = "grid" else: grid = None path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=1, nt=1, grid=grid, write_to_disk=True ) if grid is not None: gridpath = path.parent.joinpath("grid.nc") else: gridpath = None # Load it as a boutdataset if geometry is None: with pytest.warns(UserWarning): original = open_boutdataset( datapath=path, inputfilepath=None, geometry=geometry, gridfilepath=gridpath, ) else: > original = open_boutdataset( datapath=path, inputfilepath=None, geometry=geometry, gridfilepath=gridpath, ) xbout/tests/test_boutdataset.py:2158: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901f1ab60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________________ TestSaveRestart.test_to_restart[None] _____________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = tind = None @pytest.mark.parametrize("tind", [None, pytest.param(1, marks=pytest.mark.long)]) def test_to_restart(self, tmp_path_factory, bout_xyt_example_files, tind): nxpe = 3 nype = 2 nt = 6 path = bout_xyt_example_files( tmp_path_factory, nxpe=nxpe, nype=nype, nt=1, lengths=[nt, 4, 4, 7], guards={"x": 2, "y": 2}, write_to_disk=True, ) # Load it as a boutdataset with pytest.warns(UserWarning): > ds = open_boutdataset(datapath=path) xbout/tests/test_boutdataset.py:2205: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902c8fbe0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________________ TestSaveRestart.test_to_restart[1] ______________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = tind = 1 @pytest.mark.parametrize("tind", [None, pytest.param(1, marks=pytest.mark.long)]) def test_to_restart(self, tmp_path_factory, bout_xyt_example_files, tind): nxpe = 3 nype = 2 nt = 6 path = bout_xyt_example_files( tmp_path_factory, nxpe=nxpe, nype=nype, nt=1, lengths=[nt, 4, 4, 7], guards={"x": 2, "y": 2}, write_to_disk=True, ) # Load it as a boutdataset with pytest.warns(UserWarning): > ds = open_boutdataset(datapath=path) xbout/tests/test_boutdataset.py:2205: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902026740> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________________ TestSaveRestart.test_to_restart_change_npe __________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = def test_to_restart_change_npe(self, tmp_path_factory, bout_xyt_example_files): nxpe_in = 3 nype_in = 2 nxpe = 2 nype = 4 nt = 6 path = bout_xyt_example_files( tmp_path_factory, nxpe=nxpe_in, nype=nype_in, nt=1, lengths=[nt, 4, 4, 7], guards={"x": 2, "y": 2}, write_to_disk=True, ) # Load it as a boutdataset with pytest.warns(UserWarning): > ds = open_boutdataset(datapath=path) xbout/tests/test_boutdataset.py:2283: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902837dc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________ TestSaveRestart.test_to_restart_change_npe_doublenull _____________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = @pytest.mark.long def test_to_restart_change_npe_doublenull( self, tmp_path_factory, bout_xyt_example_files ): nxpe_in = 3 nype_in = 6 nxpe = 1 nype = 12 nt = 6 path = bout_xyt_example_files( tmp_path_factory, nxpe=nxpe_in, nype=nype_in, nt=1, guards={"x": 2, "y": 2}, lengths=(nt, 5, 4, 7), topology="upper-disconnected-double-null", write_to_disk=True, ) # Load it as a boutdataset with pytest.warns(UserWarning): > ds = open_boutdataset(datapath=path) xbout/tests/test_boutdataset.py:2356: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901a5aec0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___ TestSaveRestart.test_to_restart_change_npe_doublenull_expect_fail[npes0] ___ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = npes = (2, 6) @pytest.mark.long @pytest.mark.parametrize("npes", [(2, 6), (3, 4)]) def test_to_restart_change_npe_doublenull_expect_fail( self, tmp_path_factory, bout_xyt_example_files, npes ): nxpe_in = 3 nype_in = 6 nxpe, nype = npes path = bout_xyt_example_files( tmp_path_factory, nxpe=nxpe_in, nype=nype_in, nt=1, guards={"x": 2, "y": 2}, lengths=(6, 5, 4, 7), topology="lower-disconnected-double-null", write_to_disk=True, ) # Load it as a boutdataset with pytest.warns(UserWarning): > ds = open_boutdataset(datapath=path) xbout/tests/test_boutdataset.py:2427: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902024040> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ___ TestSaveRestart.test_to_restart_change_npe_doublenull_expect_fail[npes1] ___ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = npes = (3, 4) @pytest.mark.long @pytest.mark.parametrize("npes", [(2, 6), (3, 4)]) def test_to_restart_change_npe_doublenull_expect_fail( self, tmp_path_factory, bout_xyt_example_files, npes ): nxpe_in = 3 nype_in = 6 nxpe, nype = npes path = bout_xyt_example_files( tmp_path_factory, nxpe=nxpe_in, nype=nype_in, nt=1, guards={"x": 2, "y": 2}, lengths=(6, 5, 4, 7), topology="lower-disconnected-double-null", write_to_disk=True, ) # Load it as a boutdataset with pytest.warns(UserWarning): > ds = open_boutdataset(datapath=path) xbout/tests/test_boutdataset.py:2427: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902b0c820> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError __________________________ TestOpen.test_single_file ___________________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = def test_single_file(self, tmp_path_factory, bout_xyt_example_files): path = bout_xyt_example_files( tmp_path_factory, nxpe=1, nype=1, nt=1, write_to_disk=True ) with pytest.warns(UserWarning): > actual = open_boutdataset(datapath=path, keep_xboundaries=False) xbout/tests/test_load.py:280: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901baf1c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _________________________ TestOpen.test_squashed_file __________________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = def test_squashed_file(self, tmp_path_factory, bout_xyt_example_files): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=3, nt=1, squashed=True, write_to_disk=True ) with pytest.warns(UserWarning): > actual = open_boutdataset(datapath=path, keep_xboundaries=False) xbout/tests/test_load.py:306: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901ae37c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ________________ TestOpen.test_squashed_doublenull[False-False] ________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = keep_xboundaries = False, keep_yboundaries = False @pytest.mark.parametrize( "keep_xboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) @pytest.mark.parametrize( "keep_yboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_squashed_doublenull( self, tmp_path_factory, bout_xyt_example_files, keep_xboundaries, keep_yboundaries, ): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=6, nt=1, lengths=(6, 2, 4, 7), guards={"x": 2, "y": 2}, squashed=True, topology="lower-disconnected-double-null", ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=path, keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_load.py:351: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39019f91e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ________________ TestOpen.test_squashed_doublenull[False-True] _________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = keep_xboundaries = True, keep_yboundaries = False @pytest.mark.parametrize( "keep_xboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) @pytest.mark.parametrize( "keep_yboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_squashed_doublenull( self, tmp_path_factory, bout_xyt_example_files, keep_xboundaries, keep_yboundaries, ): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=6, nt=1, lengths=(6, 2, 4, 7), guards={"x": 2, "y": 2}, squashed=True, topology="lower-disconnected-double-null", ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=path, keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_load.py:351: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902835600> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ________________ TestOpen.test_squashed_doublenull[True-False] _________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = keep_xboundaries = False, keep_yboundaries = True @pytest.mark.parametrize( "keep_xboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) @pytest.mark.parametrize( "keep_yboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_squashed_doublenull( self, tmp_path_factory, bout_xyt_example_files, keep_xboundaries, keep_yboundaries, ): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=6, nt=1, lengths=(6, 2, 4, 7), guards={"x": 2, "y": 2}, squashed=True, topology="lower-disconnected-double-null", ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=path, keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_load.py:351: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902c8c9a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _________________ TestOpen.test_squashed_doublenull[True-True] _________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = keep_xboundaries = True, keep_yboundaries = True @pytest.mark.parametrize( "keep_xboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) @pytest.mark.parametrize( "keep_yboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_squashed_doublenull( self, tmp_path_factory, bout_xyt_example_files, keep_xboundaries, keep_yboundaries, ): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=6, nt=1, lengths=(6, 2, 4, 7), guards={"x": 2, "y": 2}, squashed=True, topology="lower-disconnected-double-null", ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=path, keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_load.py:351: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901f78400> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____________ TestOpen.test_squashed_doublenull_file[False-False] ______________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = keep_xboundaries = False, keep_yboundaries = False @pytest.mark.parametrize( "keep_xboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) @pytest.mark.parametrize( "keep_yboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_squashed_doublenull_file( self, tmp_path_factory, bout_xyt_example_files, keep_xboundaries, keep_yboundaries, ): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=6, nt=1, lengths=(6, 4, 4, 7), guards={"x": 2, "y": 2}, squashed=True, write_to_disk=True, topology="upper-disconnected-double-null", ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=path, keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_load.py:390: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390200b1c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________ TestOpen.test_squashed_doublenull_file[False-True] ______________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = keep_xboundaries = True, keep_yboundaries = False @pytest.mark.parametrize( "keep_xboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) @pytest.mark.parametrize( "keep_yboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_squashed_doublenull_file( self, tmp_path_factory, bout_xyt_example_files, keep_xboundaries, keep_yboundaries, ): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=6, nt=1, lengths=(6, 4, 4, 7), guards={"x": 2, "y": 2}, squashed=True, write_to_disk=True, topology="upper-disconnected-double-null", ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=path, keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_load.py:390: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902026a40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________ TestOpen.test_squashed_doublenull_file[True-False] ______________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = keep_xboundaries = False, keep_yboundaries = True @pytest.mark.parametrize( "keep_xboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) @pytest.mark.parametrize( "keep_yboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_squashed_doublenull_file( self, tmp_path_factory, bout_xyt_example_files, keep_xboundaries, keep_yboundaries, ): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=6, nt=1, lengths=(6, 4, 4, 7), guards={"x": 2, "y": 2}, squashed=True, write_to_disk=True, topology="upper-disconnected-double-null", ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=path, keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_load.py:390: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902f9bf40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ______________ TestOpen.test_squashed_doublenull_file[True-True] _______________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = keep_xboundaries = True, keep_yboundaries = True @pytest.mark.parametrize( "keep_xboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) @pytest.mark.parametrize( "keep_yboundaries", [False, pytest.param(True, marks=pytest.mark.long)] ) def test_squashed_doublenull_file( self, tmp_path_factory, bout_xyt_example_files, keep_xboundaries, keep_yboundaries, ): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=6, nt=1, lengths=(6, 4, 4, 7), guards={"x": 2, "y": 2}, squashed=True, write_to_disk=True, topology="upper-disconnected-double-null", ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=path, keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_load.py:390: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901d11420> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ________________________ TestOpen.test_combine_along_x _________________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = def test_combine_along_x(self, tmp_path_factory, bout_xyt_example_files): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=1, nt=1, syn_data_type="stepped", write_to_disk=True, ) with pytest.warns(UserWarning): > actual = open_boutdataset(datapath=path, keep_xboundaries=False) xbout/tests/test_load.py:414: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901dcc4c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ________________________ TestOpen.test_combine_along_y _________________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = def test_combine_along_y(self, tmp_path_factory, bout_xyt_example_files): path = bout_xyt_example_files( tmp_path_factory, nxpe=1, nype=3, nt=1, syn_data_type="stepped", write_to_disk=True, ) with pytest.warns(UserWarning): > actual = open_boutdataset(datapath=path, keep_xboundaries=False) xbout/tests/test_load.py:450: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901a59780> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____________ TestOpen.test_combine_along_xy[lengths0-False-False] _____________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = bout_v5 = False, metric_3D = False, lengths = (6, 2, 4, 7) @pytest.mark.parametrize( "bout_v5,metric_3D", [(False, False), (True, False), (True, True)] ) @pytest.mark.parametrize("lengths", [(6, 2, 4, 7), (6, 2, 4, 1)]) def test_combine_along_xy( self, tmp_path_factory, bout_xyt_example_files, bout_v5, metric_3D, lengths ): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=3, nt=1, lengths=lengths, syn_data_type="stepped", write_to_disk=True, bout_v5=bout_v5, metric_3D=metric_3D, ) with pytest.warns(UserWarning): > actual = open_boutdataset(datapath=path, keep_xboundaries=False) xbout/tests/test_load.py:497: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901c38dc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _____________ TestOpen.test_combine_along_xy[lengths0-True-False] ______________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = bout_v5 = True, metric_3D = False, lengths = (6, 2, 4, 7) @pytest.mark.parametrize( "bout_v5,metric_3D", [(False, False), (True, False), (True, True)] ) @pytest.mark.parametrize("lengths", [(6, 2, 4, 7), (6, 2, 4, 1)]) def test_combine_along_xy( self, tmp_path_factory, bout_xyt_example_files, bout_v5, metric_3D, lengths ): path = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=3, nt=1, lengths=lengths, syn_data_type="stepped", write_to_disk=True, bout_v5=bout_v5, metric_3D=metric_3D, ) with pytest.warns(UserWarning): > actual = open_boutdataset(datapath=path, keep_xboundaries=False) xbout/tests/test_load.py:497: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902bacac0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ____________________________ TestOpen.test_toroidal ____________________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = def test_toroidal(self, tmp_path_factory, bout_xyt_example_files): # actually write these to disk to test the loading fully path = bout_xyt_example_files( tmp_path_factory, nxpe=3, nype=3, nt=1, syn_data_type="stepped", grid="grid", write_to_disk=True, ) > actual = open_boutdataset( datapath=path, geometry="toroidal", gridfilepath=path.parent.joinpath("grid.nc"), ) xbout/tests/test_load.py:555: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39027a1480> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________________________ TestOpen.test_salpha _____________________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = def test_salpha(self, tmp_path_factory, bout_xyt_example_files): path = bout_xyt_example_files( tmp_path_factory, nxpe=3, nype=3, nt=1, syn_data_type="stepped", grid="grid", write_to_disk=True, ) > actual = open_boutdataset( datapath=path, geometry="s-alpha", gridfilepath=path.parent.joinpath("grid.nc"), ) xbout/tests/test_load.py:589: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39027de800> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying s-alpha geometry conventions ___________________________ TestOpen.test_drop_vars ____________________________ self = tmp_path_factory = TempPathFactory(_given_basetemp=None, _trace=, _basetemp=PosixPath('/tmp/pytest-of-mockbuild/pytest-0'), _retention_count=3, _retention_policy='all') bout_xyt_example_files = def test_drop_vars(self, tmp_path_factory, bout_xyt_example_files): datapath = bout_xyt_example_files( tmp_path_factory, nxpe=4, nype=1, nt=1, syn_data_type="stepped", write_to_disk=True, ) with pytest.warns(UserWarning): > ds = open_boutdataset( datapath=datapath, keep_xboundaries=False, drop_variables=["T"] ) xbout/tests/test_load.py:618: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902cbb520> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39027e6920> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902355ae0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39025a81c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f911a1a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f90f43a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9799de0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9738ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39027d2fe0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902c8aa40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9714400> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f95fbb20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f95ca0e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f969b0a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f936de40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9378400> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9725360> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390253dd20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39018d1720> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39023a6d40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39025d00a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f97809a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9390520> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902f86800> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f96060e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39027dd060> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390267e680> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f96c0220> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9135de0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f932ef20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f96803a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9618160> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f92e3b80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9146f20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9178ac0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39028d6080> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9652d40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f93743a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902585f00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f948cca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f961ab60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901f2f8e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9665480> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902210ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902c2dfc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f92c83a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9624e80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f91a0ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390234fe80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902553c40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902312b60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f90b8100> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f93d5420> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f93e5f60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f944abc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f97674c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f96ad3c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f972c0a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902cbb8e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f91a74c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f97ac700> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f93a6260> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f962cf40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8848a00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f97233a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f97617e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902546140> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f96220e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9497ac0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f87f03a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f87cd360> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f921cca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f97af460> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f95db880> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39027df1c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9605b40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9417d60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9767760> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8804220> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9324ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9486500> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3901f6e320> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9761a20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9114ee0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902c0a6e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f94903a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f94994e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f88960e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f96412a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390289f280> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f932a4a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9716b00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f95d8be0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9369360> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390170a680> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f96f66e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestPlot.test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9483160> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[0-False-False-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9723e20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[0-False-False-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f96c6380> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[0-False-False-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f90f4ac0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[0-False-False-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902311660> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-True-False-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39018794e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-True-False-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f948e6e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-True-False-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9780220> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-True-False-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f92f4be0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-False-True-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9799a20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-False-True-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f91214e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-False-True-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9706e60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-False-True-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9796da0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-True-True-guards0] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f97af880> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-True-True-guards1] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9105c60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-True-True-guards2] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9350760> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[0-True-True-guards3] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f95e1a20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[1-False-False-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f962f2e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[1-False-False-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f91952a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[1-False-False-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f96821a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[1-False-False-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9660820> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-True-False-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902d8ee00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-True-False-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f92d4580> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-True-False-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39024b9000> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-True-False-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f93f7940> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-False-True-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f93de3e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-False-True-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f914c880> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-False-True-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902311600> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-False-True-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f90f4ee0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-True-True-guards0] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9455d80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-True-True-guards1] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902c08b80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-True-True-guards2] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902755540> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[1-True-True-guards3] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9483700> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[2-False-False-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f949ae60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[2-False-False-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9492a40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[2-False-False-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f936b100> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestPlot.test_region_limiter[2-False-False-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f90cd3c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-True-False-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f93a6da0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-True-False-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f931e6e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-True-False-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9659c00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-True-False-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f90e4dc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-False-True-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390170b400> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-False-True-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f95cfd00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-False-True-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f94ab7c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-False-True-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f944cd60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-True-True-guards0] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f94832e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-True-True-guards1] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9142ce0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-True-True-guards2] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902c09240> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestPlot.test_region_limiter[2-True-True-guards3] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 2 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [ 0, pytest.param(1, marks=pytest.mark.long), pytest.param(2, marks=pytest.mark.long), ], ) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 5, 4, 3), nxpe=1, nype=1, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_plot.py:172: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39027e4880> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[False-False-guards0] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9653c40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[False-False-guards1] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f966efe0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[False-False-guards2] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f932ae60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[False-False-guards3] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9334760> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[True-False-guards0] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f88056c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[True-False-guards1] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39017098a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[True-False-guards2] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f93a7640> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[True-False-guards3] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f880f2e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[False-True-guards0] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9724160> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[False-True-guards1] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9620700> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[False-True-guards2] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f928c880> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_core[False-True-guards3] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f87cece0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_core[True-True-guards0] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f90de0e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_core[True-True-guards1] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f946fe20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_core[True-True-guards2] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f92c9840> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_core[True-True-guards3] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_core( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="core", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:45: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f95f71c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_sol[False-False-guards0] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f949a680> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_sol[False-False-guards1] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f88368c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_sol[False-False-guards2] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f88826e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_sol[False-False-guards3] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f91e6560> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[True-False-guards0] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f928bd60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[True-False-guards1] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f91d2500> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[True-False-guards2] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f87f0100> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[True-False-guards3] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f881fd00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[False-True-guards0] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902593460> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[False-True-guards1] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9190400> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[False-True-guards2] ________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f93cdd80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[False-True-guards3] ________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f90e6fe0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[True-True-guards0] _________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9196080> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[True-True-guards1] _________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9327c40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[True-True-guards2] _________________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8805b40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________________ TestRegion.test_region_sol[True-True-guards3] _________________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_sol( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note need to use more than (3*MXG,3*MYG) points per output file dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="sol", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:91: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f92623e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_limiter[0-False-False-guards0] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39026295a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_limiter[0-False-False-guards1] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f87d7340> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_limiter[0-False-False-guards2] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f926dfc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_limiter[0-False-False-guards3] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8390b20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-True-False-guards0] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f83a33a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-True-False-guards1] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f832df60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-True-False-guards2] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f83429e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-True-False-guards3] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f93a74c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-False-True-guards0] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f936a560> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-False-True-guards1] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8895fc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-False-True-guards2] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9763100> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-False-True-guards3] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8849240> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-True-True-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f87f6620> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-True-True-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f90de800> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-True-True-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8482620> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[0-True-True-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True region_guards = 0 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f846fa60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_limiter[1-False-False-guards0] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f83cbe20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_limiter[1-False-False-guards1] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9287f40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_limiter[1-False-False-guards2] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f94145e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_limiter[1-False-False-guards3] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f96265c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-True-False-guards0] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f94987c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-True-False-guards1] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f882f580> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-True-False-guards2] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f82f0ee0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-True-False-guards3] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f82bdf60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-False-True-guards0] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8436800> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-False-True-guards1] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f842f580> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-False-True-guards2] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f83c1840> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-False-True-guards3] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f87f3280> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-True-True-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f947a080> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-True-True-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390278e740> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-True-True-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f977e4a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_limiter[1-True-True-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True region_guards = 1 @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize("region_guards", [0, 1]) def test_region_limiter( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, region_guards, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="limiter", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:134: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f97260e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[False-False-guards0] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9764340> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[False-False-guards1] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8189ba0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[False-False-guards2] ______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f80ee2c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[False-False-guards3] ______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f821ba00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[True-False-guards0] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f881ac80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[True-False-guards1] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8807e20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[True-False-guards2] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9173220> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[True-False-guards3] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9416d40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[False-True-guards0] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f83dfa60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[False-True-guards1] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f830b1c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[False-True-guards2] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f836fca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ______________ TestRegion.test_region_xpoint[False-True-guards3] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f845f4c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_xpoint[True-True-guards0] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f81e0820> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_xpoint[True-True-guards1] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8236320> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_xpoint[True-True-guards2] _______________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f81746a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______________ TestRegion.test_region_xpoint[True-True-guards3] _______________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_xpoint( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="xpoint", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:215: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f94ab340> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[False-False-guards0] ____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f90ddea0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[False-False-guards1] ____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f83e72e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[False-False-guards2] ____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f82931c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[False-False-guards3] ____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f15e7b80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[True-False-guards0] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f16a3340> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[True-False-guards1] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f15dad40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[True-False-guards2] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f161b1c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[True-False-guards3] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f82997e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[False-True-guards0] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f82ef940> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[False-True-guards1] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f832e8c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[False-True-guards2] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f95f6920> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ____________ TestRegion.test_region_singlenull[False-True-guards3] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f92de9e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_singlenull[True-True-guards0] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f842e440> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_singlenull[True-True-guards1] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1693e20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_singlenull[True-True-guards2] _____________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f16aad40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _____________ TestRegion.test_region_singlenull[True-True-guards3] _____________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_singlenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=4, nt=1, guards=guards, grid="grid", topology="single-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:409: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8423640> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______ TestRegion.test_region_connecteddoublenull[False-False-guards0] ________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f95cfa60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______ TestRegion.test_region_connecteddoublenull[False-False-guards1] ________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f81bd840> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______ TestRegion.test_region_connecteddoublenull[False-False-guards2] ________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f178c280> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _______ TestRegion.test_region_connecteddoublenull[False-False-guards3] ________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f143e7a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[True-False-guards0] ________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f142ac80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[True-False-guards1] ________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f14a8580> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[True-False-guards2] ________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f86b01c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[True-False-guards3] ________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f886d900> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[False-True-guards0] ________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902523d00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[False-True-guards1] ________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f849d3c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[False-True-guards2] ________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f836d900> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[False-True-guards3] ________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f820cd60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[True-True-guards0] _________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1643dc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[True-True-guards1] _________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f861e440> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[True-True-guards2] _________ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f86a6860> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions ________ TestRegion.test_region_connecteddoublenull[True-True-guards3] _________ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True @pytest.mark.long @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) def test_region_connecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology="connected-double-null", ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:578: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8674e80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f81df580> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9104760> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8268ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f13dc0a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f148e020> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f852cca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f84ec520> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f84ce1a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f82980a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f832d120> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f849e2c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f842f940> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f882d120> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1696200> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8628e20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1591420> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f81d7dc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f86774c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f14f6020> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f85682e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f85aa260> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f86d8e80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8768b20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f13263e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f85825c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f923df00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902522da0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f972e6e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f84531c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f88702e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f869f340> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:885: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1342d40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f134c3a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f85a85e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1429540> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8439720> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1589300> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f135d540> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f850e3e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f86bd5a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9512d40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1311420> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8451660> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8494e20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f842fdc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8437be0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1591540> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f820dba0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1541300> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1306560> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1396140> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8201ae0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f14631c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f86e3280> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f84c6140> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f85923e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f133ad40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f131eec0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9553280> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f820ea40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f15938e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9170be0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902523040> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8495ea0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f866c0a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f12fbe20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1559ae0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f952cca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f14dc760> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8785b40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f81bd060> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f390278d660> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f14e6b00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f86b8520> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f12f5f00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f85a4ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f16ab460> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f134f340> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f869d480> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f84946a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f3902522da0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f86e35e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f861a260> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1543520> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8774ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f94c83a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f84c1540> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1347e20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f86b1c00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8769900> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f13a6260> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f14de1a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f13a8ca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f94d04c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f127df00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f829b3a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1691cc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f830aec0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9626ec0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f83cb340> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f92dc400> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f86a2320> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f16402e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f131ef80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f87b0160> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f13f7640> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f86d3580> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8232c80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9512e00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f16a8400> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f94dc460> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'lower-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8755ea0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8620d00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f134a680> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f16a54e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1618100> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8818a00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1571f60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f155c1c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f15feda0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1232b60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1583820> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f81e2620> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f843a380> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f81f6f20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f81bf0a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f14de860> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 0, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f12d0b80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1335ea0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f82f6b60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f94c9f00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f155f460> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1572d40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39024ba9e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f933b580> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f83acd00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f82a6020> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f953ea40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1262e00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f86e1ea0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f86dbca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1477160> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f95ce5c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f12f4760> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f933e920> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1592320> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f124c160> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f0ce3520> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8621960> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f95f42e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f87bb160> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f39024bb700> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f861a140> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f963fb80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f94ca080> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1641600> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f95a2200> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8755780> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f86972e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f856db40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f81f6bc0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f81bd960> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f86f5660> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1352d40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8763d60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f0cd1de0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f11bae00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f136bc40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8391780> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f14c7a00> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f85d9d20> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f836cf40> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8437940> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f82a7760> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f0cecca0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = {'theta': 1, 'x': 1}, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f0d63ee0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f86caf80> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f86f97e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1685000> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f177a5c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f8632560> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f85a56c0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f120c880> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = False with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f94d1de0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9558760> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f82ed5a0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f9449f60> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = False, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f886e320> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards0] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f93a08e0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards1] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 0}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f95a4ac0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards2] _ self = bout_xyt_example_files = guards = {'x': 0, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f1692320> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions _ TestRegion.test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards3] _ self = bout_xyt_example_files = guards = {'x': 2, 'y': 2}, keep_xboundaries = True, keep_yboundaries = True with_guards = 1, dnd_type = 'upper-disconnected-double-null' @pytest.mark.parametrize(params_guards, params_guards_values) @pytest.mark.parametrize(params_boundaries, params_boundaries_values) @pytest.mark.parametrize( "with_guards", [0, {"x": 1}, {"theta": 1}, {"x": 1, "theta": 1}, 1] ) @pytest.mark.parametrize( "dnd_type", ["lower-disconnected-double-null", "upper-disconnected-double-null"] ) def test_region_disconnecteddoublenull_get_one_guard( self, bout_xyt_example_files, guards, keep_xboundaries, keep_yboundaries, with_guards, dnd_type, ): # Note using more than MXG x-direction points and MYG y-direction points per # output file ensures tests for whether boundary cells are present do not fail # when using minimal numbers of processors dataset_list, grid_ds = bout_xyt_example_files( None, lengths=(2, 3, 4, 3), nxpe=3, nype=6, nt=1, guards=guards, grid="grid", topology=dnd_type, ) > ds = open_boutdataset( datapath=dataset_list, gridfilepath=grid_ds, geometry="toroidal", keep_xboundaries=keep_xboundaries, keep_yboundaries=keep_yboundaries, ) xbout/tests/test_region.py:1458: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ xbout/load.py:370: in open_boutdataset ds = geometries.apply_geometry(ds, geometry, grid=grid) xbout/geometries.py:231: in apply_geometry np.linspace(start=z0, stop=z1, num=nz, endpoint=False), dims=zcoord /usr/lib64/python3.14/site-packages/numpy/_core/function_base.py:183: in linspace y = conv.wrap(y.astype(dtype, copy=False)) /usr/lib/python3.14/site-packages/xarray/core/dataarray.py:4808: in __array_wrap__ new_var = self.variable.__array_wrap__(obj, context, return_scalar) /usr/lib/python3.14/site-packages/xarray/core/variable.py:2316: in __array_wrap__ return Variable(self.dims, obj) /usr/lib/python3.14/site-packages/xarray/core/variable.py:365: in __init__ super().__init__( /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:264: in __init__ self._dims = self._parse_dimensions(dims) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'xarray.core.variable.Variable' object has no attribute '_dims'") raised in repr()] Variable object at 0x7f38f82f8be0> dims = () def _parse_dimensions(self, dims: _DimsLike) -> _Dims: dims = (dims,) if isinstance(dims, str) else tuple(dims) if len(dims) != self.ndim: > raise ValueError( f"dimensions {dims} must have the same length as the " f"number of data dimensions, ndim={self.ndim}" ) E ValueError: dimensions () must have the same length as the number of data dimensions, ndim=1 /usr/lib/python3.14/site-packages/xarray/namedarray/core.py:508: ValueError ----------------------------- Captured stdout call ----------------------------- Applying toroidal geometry conventions =============================== warnings summary =============================== xbout/tests/test_against_collect.py: 21 warnings xbout/tests/test_animate.py: 38 warnings xbout/tests/test_boutdataset.py: 19 warnings xbout/tests/test_load.py: 18 warnings /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/load.py:813: FutureWarning: The return type of `Dataset.dims` will be changed to return a set of dimension names in future, in order to be more consistent with `DataArray.dims`. To access a mapping from dimension names to lengths, please use `Dataset.sizes`. ds, "MXSUB", default=ds.dims["x"] - 2 * mxg, info=info xbout/tests/test_against_collect.py: 21 warnings xbout/tests/test_animate.py: 38 warnings xbout/tests/test_boutdataset.py: 19 warnings xbout/tests/test_load.py: 18 warnings /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/load.py:816: FutureWarning: The return type of `Dataset.dims` will be changed to return a set of dimension names in future, in order to be more consistent with `DataArray.dims`. To access a mapping from dimension names to lengths, please use `Dataset.sizes`. ds, "MYSUB", default=ds.dims["y"] - 2 * myg, info=info xbout/tests/test_against_collect.py: 21 warnings xbout/tests/test_animate.py: 38 warnings xbout/tests/test_boutdataset.py: 19 warnings xbout/tests/test_load.py: 18 warnings /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/load.py:831: FutureWarning: The return type of `Dataset.dims` will be changed to return a set of dimension names in future, in order to be more consistent with `DataArray.dims`. To access a mapping from dimension names to lengths, please use `Dataset.sizes`. nx_file = ds.dims["x"] xbout/tests/test_against_collect.py: 21 warnings xbout/tests/test_animate.py: 38 warnings xbout/tests/test_boutdataset.py: 19 warnings xbout/tests/test_load.py: 18 warnings /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/load.py:832: FutureWarning: The return type of `Dataset.dims` will be changed to return a set of dimension names in future, in order to be more consistent with `DataArray.dims`. To access a mapping from dimension names to lengths, please use `Dataset.sizes`. ny_file = ds.dims["y"] xbout/tests/test_against_collect.py: 5 warnings xbout/tests/test_animate.py: 38 warnings xbout/tests/test_boutdataarray.py: 56 warnings xbout/tests/test_boutdataset.py: 84 warnings xbout/tests/test_geometries.py: 1 warning xbout/tests/test_grid.py: 5 warnings xbout/tests/test_load.py: 26 warnings xbout/tests/test_plot.py: 144 warnings xbout/tests/test_region.py: 304 warnings /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/geometries.py:147: FutureWarning: The return type of `Dataset.dims` will be changed to return a set of dimension names in future, in order to be more consistent with `DataArray.dims`. To access a mapping from dimension names to lengths, please use `Dataset.sizes`. nx = updated_ds.dims[xcoord] xbout/tests/test_against_collect.py: 5 warnings xbout/tests/test_animate.py: 38 warnings xbout/tests/test_boutdataarray.py: 56 warnings xbout/tests/test_boutdataset.py: 84 warnings xbout/tests/test_load.py: 27 warnings xbout/tests/test_plot.py: 144 warnings xbout/tests/test_region.py: 304 warnings /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/geometries.py:184: FutureWarning: The return type of `Dataset.dims` will be changed to return a set of dimension names in future, in order to be more consistent with `DataArray.dims`. To access a mapping from dimension names to lengths, please use `Dataset.sizes`. nz = updated_ds.dims[zcoord] xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_slab xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_CENTRE] xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_XLOW] xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_YLOW] xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_ZLOW] xbout/tests/test_boutdataset.py::TestSaveRestart::test_from_restart_to_restart xbout/tests/test_grid.py::TestOpenGrid::test_open_grid_extra_dims xbout/tests/test_load.py::TestOpen::test_restarts /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/load.py:350: UserWarning: No geometry type found, no physical coordinates will be added warn("No geometry type found, no physical coordinates will be added") xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths0-True-True] xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths1-False-False] xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths1-True-False] xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths1-True-True] /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/tests/test_load.py:520: UserWarning: rename 't_array' to 't' does not create an index anymore. Try using swap_dims instead or use set_index after rename to create an indexed coordinate. expected = expected.set_coords(["t_array", "dx", "dy", "dz"]).rename( xbout/tests/test_load.py::TestOpen::test_salpha /builddir/build/BUILD/python-xbout-0.3.6-build/xbout-0.3.6/xbout/geometries.py:482: UserWarning: rename 'x' to 'r' does not create an index anymore. Try using swap_dims instead or use set_index after rename to create an indexed coordinate. ds = ds.rename(x="r") -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================== slowest durations =============================== 4.15s call xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_new_collect_indexing_slice 2.21s call xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_new_collect_indexing_list 2.14s call xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_new_collect_indexing_int 1.88s call xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths1-True-True] 1.77s call xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths0-True-True] 1.73s call xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart_change_npe_doublenull_expect_fail[npes0] 1.71s call xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart_change_npe_doublenull 1.68s call xbout/tests/test_boutdataset.py::TestSave::test_save_all 1.66s call xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths1-True-False] 1.61s call xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths1-False-False] 1.43s call xbout/tests/test_boutdataset.py::TestSave::test_reload_all[None] 1.19s call xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths0-False-False] 1.12s call xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths0-True-False] 0.91s call xbout/tests/test_boutdataset.py::TestSave::test_reload_all[toroidal] 0.89s call xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart_change_npe_doublenull_expect_fail[npes1] 0.84s call xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_multiple_files_along_xy 0.84s call xbout/tests/test_boutdataset.py::TestSaveRestart::test_from_restart_to_restart 0.83s call xbout/tests/test_load.py::TestOpen::test_toroidal 0.83s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls4] 0.81s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_1d_multiline 0.79s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_vmax 0.78s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_fps 0.78s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_logscale_float 0.77s setup xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls5] 0.76s setup xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls5] 0.75s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls0] 0.74s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_subplots_adjust 0.74s setup xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls2] 0.74s setup xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls1] 0.74s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_animate_over 0.73s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls2] 0.73s setup xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls4] 0.72s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls5] 0.72s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_not_enough_nrowsncols 0.72s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls3] 0.72s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls1] 0.72s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_ncols 0.72s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_nrows 0.72s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_1d_default 0.72s setup xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls0] 0.71s setup xbout/tests/test_animate.py::TestAnimate::test_animate1D 0.71s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_vmax_list 0.71s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list 0.71s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_save_as 0.71s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_logscale 0.71s setup xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls3] 0.71s setup xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls4] 0.71s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_vmin 0.70s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_logscale_list 0.70s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_vmin_list 0.70s setup xbout/tests/test_animate.py::TestAnimate::test_animate_list_titles_list 0.70s setup xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls3] 0.67s setup xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls2] 0.67s setup xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls1] 0.66s setup xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls0] 0.65s setup xbout/tests/test_animate.py::TestAnimate::test_animate2D 0.60s call xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart[None] 0.51s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards0] 0.48s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-False-guards0] 0.47s call xbout/tests/test_load.py::TestOpen::test_salpha 0.46s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards2] 0.46s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards0] 0.45s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards3] 0.45s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards1] 0.45s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards0] 0.45s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards1] 0.45s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards2] 0.45s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards3] 0.45s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards3] 0.45s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_from_unstructured 0.45s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards1] 0.45s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-False-guards2] 0.44s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards2] 0.44s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_from_unstructured_unstructured_output 0.44s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-False-guards3] 0.44s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-False-guards0] 0.44s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-False-guards1] 0.43s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-False-guards1] 0.43s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-False-guards3] 0.43s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-False-guards2] 0.40s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel_limiter 0.39s call xbout/tests/test_boutdataset.py::TestSave::test_save_separate_variables 0.39s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_CENTRE] 0.39s call xbout/tests/test_load.py::TestOpen::test_combine_along_x 0.37s call xbout/tests/test_boutdataset.py::TestSave::test_reload_separate_variables[toroidal] 0.36s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_slab 0.34s call xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart_change_npe 0.34s call xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart[1] 0.30s call xbout/tests/test_load.py::TestOpen::test_combine_along_y 0.30s call xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_multiple_files_along_y 0.30s call xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_multiple_files_along_x 0.30s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-False-guards3] 0.30s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-False-guards0] 0.29s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-False-guards2] 0.29s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-False-guards2] 0.29s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-False-guards1] 0.29s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-False-guards3] 0.29s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-False-guards1] 0.29s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-False-guards0] 0.28s call xbout/tests/test_region.py::TestRegion::test_region_core[False-False-guards3] 0.28s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-False-guards2] 0.28s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-False-guards3] 0.28s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-False-guards1] 0.28s call xbout/tests/test_region.py::TestRegion::test_region_sol[False-False-guards2] 0.28s call xbout/tests/test_region.py::TestRegion::test_region_core[False-False-guards0] 0.28s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-False-guards0] 0.27s call xbout/tests/test_region.py::TestRegion::test_region_core[False-False-guards2] 0.27s call xbout/tests/test_region.py::TestRegion::test_region_sol[False-False-guards0] 0.27s call xbout/tests/test_region.py::TestRegion::test_region_sol[False-False-guards3] 0.27s call xbout/tests/test_region.py::TestRegion::test_region_sol[False-False-guards1] 0.27s call xbout/tests/test_region.py::TestRegion::test_region_core[False-False-guards1] 0.26s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_dataset 0.25s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards1] 0.25s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards0] 0.24s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards3] 0.24s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards1] 0.24s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_XLOW] 0.24s call xbout/tests/test_boutdataset.py::TestSave::test_reload_separate_variables_time_split[None] 0.23s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards3] 0.23s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_YLOW] 0.23s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-False-guards3] 0.23s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards3] 0.23s call xbout/tests/test_boutdataset.py::TestSave::test_reload_separate_variables_time_split[toroidal] 0.23s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards3] 0.22s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_ZLOW] 0.21s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards3] 0.21s call xbout/tests/test_load.py::TestOpen::test_drop_vars 0.21s call xbout/tests/test_boutdataset.py::TestSave::test_reload_separate_variables[None] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards0] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards2] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards2] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards3] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards3] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards2] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards1] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards3] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards3] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards1] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards2] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards2] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards0] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards3] 0.19s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-True-guards1] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards3] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards1] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards3] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards2] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards1] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards3] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards3] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards3] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards2] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards1] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards1] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards2] 0.19s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-True-guards1] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards2] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards3] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards0] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards1] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards0] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards0] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards0] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards3] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards0] 0.19s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-True-guards0] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards2] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards2] 0.19s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-False-guards0] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards2] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards2] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards3] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards3] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards1] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards3] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards1] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards2] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards0] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards0] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards0] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards3] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards0] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards0] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards1] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards3] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards1] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards1] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards3] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards1] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards1] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards1] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards1] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards0] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards3] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards2] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards3] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards2] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards1] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards0] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards2] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards1] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards0] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards3] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards1] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards2] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards2] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards3] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards3] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards3] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards1] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards3] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards3] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards0] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards2] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards2] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards1] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards3] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards0] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards1] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards2] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards2] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards0] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards0] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards3] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards3] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards0] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards0] 0.19s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards1] 0.19s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards2] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards0] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-True-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards2] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards2] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards3] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards0] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards3] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards2] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards0] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards2] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-False-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards3] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards2] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards3] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards1] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards0] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards2] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards2] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-False-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards0] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-True-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards1] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards2] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards0] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards1] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-True-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards3] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-False-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards2] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards0] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-False-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards2] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards3] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-True-guards3] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards1] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-False-guards1] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-True-guards0] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-True-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards2] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards1] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-False-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards1] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards3] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-True-guards2] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards3] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards2] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards3] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards1] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards1] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards0] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-True-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards1] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-True-guards2] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards3] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-False-guards1] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards0] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards2] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards0] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards0] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards3] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards2] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-True-guards1] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-True-guards0] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-True-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards1] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards3] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-False-guards2] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards2] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards2] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards1] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards2] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards0] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards2] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards1] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-True-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards1] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-False-guards1] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards1] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards3] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards0] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards2] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards0] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-False-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards0] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards0] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards1] 0.18s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[False-2-0] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards1] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards0] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards1] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards3] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards0] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards1] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards1] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards2] 0.18s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-False-guards3] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards1] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards0] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards0] 0.18s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[False-2-2] 0.18s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[False-0-0] 0.18s call xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards0] 0.18s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[False-0-2] 0.18s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-True-guards3] 0.18s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_derivatives_doublenull 0.17s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-False-guards3] 0.17s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-False-guards1] 0.17s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-True-guards1] 0.17s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-True-guards2] 0.17s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-False-guards2] 0.17s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-False-guards0] 0.17s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-True-guards0] 0.17s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-True-guards0] 0.17s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-True-guards3] 0.17s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-True-guards1] 0.17s call xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-True-guards2] 0.15s call xbout/tests/test_load.py::TestOpen::test_restarts 0.15s call xbout/tests/test_region.py::TestRegion::test_region_sol[True-True-guards3] 0.14s call xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_single_file 0.13s call xbout/tests/test_load.py::TestOpen::test_squashed_file 0.13s call xbout/tests/test_load.py::TestOpen::test_squashed_doublenull_file[False-False] 0.13s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-True-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-False-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-True-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-True-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-True-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-False-guards3] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-False-guards1] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-False-guards2] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-True-guards0] 0.12s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-False-guards0] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-True-guards1] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-True-guards3] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-True-guards2] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-False-guards1] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-False-guards2] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-True-guards3] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-True-guards0] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-True-guards2] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-True-guards1] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-True-guards1] 0.11s call xbout/tests/test_boutdataset.py::TestSave::test_save_dtype[False-float64] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-True-guards1] 0.11s call xbout/tests/test_region.py::TestRegion::test_region_sol[True-False-guards2] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-True-guards3] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-True-guards0] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-False-guards3] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-True-guards2] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-True-guards3] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-True-guards1] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-False-guards0] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-False-guards3] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-True-guards2] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-False-guards1] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-True-guards2] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-False-guards1] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_core[True-False-guards0] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-True-guards2] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-False-guards2] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-True-guards3] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-True-guards0] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-False-guards3] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-False-guards1] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-True-guards0] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-False-guards0] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-False-guards2] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-True-guards3] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-True-guards1] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-False-guards2] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-False-guards0] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-True-guards0] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_core[True-True-guards1] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_core[True-True-guards2] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_sol[False-True-guards1] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_sol[True-False-guards3] 0.10s call xbout/tests/test_fastoutput.py::TestFastOutput::test_open_fastoutput 0.10s call xbout/tests/test_region.py::TestRegion::test_region_core[True-True-guards0] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_sol[True-True-guards1] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_core[False-True-guards2] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_sol[False-True-guards3] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_sol[True-False-guards1] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_core[True-False-guards3] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_core[True-True-guards3] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_sol[True-False-guards0] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_core[True-False-guards2] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_sol[True-True-guards2] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_sol[False-True-guards0] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_core[False-True-guards0] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_sol[True-True-guards0] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_sol[False-True-guards2] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_core[True-False-guards1] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_core[False-True-guards3] 0.10s call xbout/tests/test_region.py::TestRegion::test_region_core[False-True-guards1] 0.10s call xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_metadata 0.10s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_singlenull 0.09s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_remove_yboundaries[2-2] 0.09s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_get_field_aligned 0.09s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_remove_yboundaries[0-0] 0.09s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_remove_yboundaries[2-0] 0.09s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_remove_yboundaries[0-2] 0.09s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[True-0-0] 0.09s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[True-2-0] 0.09s call xbout/tests/test_boutdataset.py::TestBoutDatasetIsXarrayDataset::test_concat 0.09s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[True-0-2] 0.09s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[True-2-2] 0.08s call xbout/tests/test_load.py::TestOpen::test_squashed_doublenull_file[True-False] 0.08s call xbout/tests/test_load.py::TestOpen::test_squashed_doublenull_file[False-True] 0.08s call xbout/tests/test_load.py::TestOpen::test_single_file 0.07s call xbout/tests/test_load.py::TestOpen::test_squashed_doublenull_file[True-True] 0.07s call xbout/tests/test_boutdataset.py::TestSave::test_save_dtype[True-float64] 0.07s call xbout/tests/test_boutdataset.py::TestSave::test_save_dtype[False-float32] 0.07s call xbout/tests/test_boutdataset.py::TestSave::test_save_dtype[True-float32] 0.05s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel 0.05s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_toroidal_points 0.05s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_toroidal_points_list 0.04s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-False-guards2] 0.04s call xbout/tests/test_grid.py::TestOpenGrid::test_open_grid_chunks 0.04s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-False-guards3] 0.04s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-False-guards1] 0.04s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-False-guards0] 0.04s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_ddy 0.04s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_sol 0.04s call xbout/tests/test_grid.py::TestOpenGrid::test_open_grid_extra_dims 0.04s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_core 0.04s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel_all_variables_arg 0.03s call xbout/tests/test_load.py::test_set_fci_coords 0.03s call xbout/tests/test_grid.py::TestOpenGrid::test_open_grid 0.03s call xbout/tests/test_grid.py::TestOpenGrid::test_open_grid_chunks_not_in_grid 0.03s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-True-guards0] 0.03s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-True-guards0] 0.03s call xbout/tests/test_load.py::TestOpen::test_squashed_doublenull[False-False] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-True-guards1] 0.02s call xbout/tests/test_load.py::TestPathHandling::test_glob_expansion_both[3-111] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-False-guards3] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-True-guards2] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-False-guards3] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-True-guards1] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-False-guards2] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-False-guards3] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-True-guards3] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-False-guards3] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-True-guards3] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-False-guards2] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-False-guards2] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-True-guards1] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-False-guards0] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-True-guards3] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-True-guards2] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-False-guards3] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-True-guards3] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-True-guards3] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-False-guards0] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-True-guards1] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-False-guards2] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-False-guards0] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-False-guards1] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-True-guards0] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-True-guards2] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-True-guards2] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-True-guards2] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-False-guards0] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-True-guards1] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-False-guards2] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-True-guards0] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-False-guards1] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-True-guards3] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-True-guards1] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-False-guards0] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-False-guards1] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-True-guards0] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-False-guards1] 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_ddz 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[False-8] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-False-guards1] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-True-guards2] 0.02s call xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-True-guards0] 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_to_cartesian 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_ddx 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[False-7] 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[False-9] 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_add_cartesian_coordinates 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[False-6] 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_sol 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_core_change_n[7] 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_core_change_n[3] 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_core_change_n[2] 0.02s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_core_change_n[18] 0.02s call xbout/tests/test_load.py::TestPathHandling::test_glob_expansion_brackets[3-111] 0.02s call xbout/tests/test_load.py::TestPathHandling::test_glob_expansion_both[121-2] 0.02s setup xbout/tests/test_load.py::test_set_fci_coords 0.02s call xbout/tests/test_grid.py::TestOpenGrid::test_open_grid_apply_geometry 0.02s call xbout/tests/test_load.py::TestStripMetadata::test_strip_metadata 0.01s call xbout/calc/tests/test_turbulence.py::TestRootMeanSquare::test_reduce_2d_dask 0.01s call xbout/tests/test_load.py::TestOpen::test_squashed_doublenull[False-True] 0.01s call xbout/tests/test_load.py::TestOpen::test_squashed_doublenull[True-False] 0.01s call xbout/tests/test_load.py::TestTrim::test_trim_timing_info[False] 0.01s call xbout/tests/test_load.py::TestOpen::test_squashed_doublenull[True-True] 0.01s call xbout/tests/test_load.py::TestTrim::test_trim_timing_info[True] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[False-CELL_ZLOW] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned[6] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned_staggered[CELL_ZLOW] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[False-CELL_XLOW] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[True-CELL_XLOW] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned[9] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned[7] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned_staggered[CELL_XLOW] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_to_cartesian 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_dask[True] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned_staggered[CELL_ZLOW] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[True-8] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[True-9] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[True-7] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned[9] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned[8] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[True-7] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned_dask 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[True-6] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned[7] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[False-8] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_add_cartesian_coordinates 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[True-CELL_YLOW] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned_staggered[CELL_YLOW] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetIsXarrayDataset::test_isel 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned_staggered[CELL_YLOW] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[True-6] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[True-8] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[False-9] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned_staggered[CELL_XLOW] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[True-CELL_ZLOW] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned[8] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[False-7] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[True-CELL_YLOW] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[False-6] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[False-CELL_YLOW] 0.01s call xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned[6] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_dask[False] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[False-CELL_ZLOW] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[True-CELL_ZLOW] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[True-CELL_XLOW] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[False-CELL_YLOW] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[True-9] 0.01s call xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[False-CELL_XLOW] 0.01s call xbout/tests/test_load.py::TestTrim::test_infer_boundaries_2d_parallelization_by_filenum[0-3-3-4-lower_boundaries9-upper_boundaries9] 0.01s call xbout/tests/test_load.py::TestTrim::test_infer_boundaries_2d_parallelization_doublenull_by_filenum[0-1-1-4-lower_boundaries1-upper_boundaries1] 0.01s call xbout/tests/test_load.py::TestTrim::test_keep_yboundaries_doublenull_by_filenum[True-3-False-True] 0.01s call xbout/tests/test_load.py::TestTrim::test_keep_yboundaries_doublenull_by_filenum[False-0-True-False] 0.01s call xbout/tests/test_load.py::TestTrim::test_keep_yboundaries_doublenull_by_filenum[False-1-False-True] 0.01s call xbout/tests/test_load.py::TestTrim::test_keep_yboundaries_doublenull_by_filenum[False-3-False-True] 0.01s call xbout/tests/test_load.py::TestTrim::test_keep_yboundaries_doublenull_by_filenum[True-0-True-False] 0.01s call xbout/tests/test_load.py::TestTrim::test_keep_yboundaries_doublenull_by_filenum[True-1-False-True] 0.01s call xbout/tests/test_load.py::TestTrim::test_keep_yboundaries_doublenull_by_filenum[True-2-True-False] 0.01s call xbout/tests/test_load.py::TestTrim::test_infer_boundaries_2d_parallelization_doublenull[0-0-3-4-lower_boundaries4-upper_boundaries4] 0.01s call xbout/tests/test_load.py::TestTrim::test_infer_boundaries_2d_parallelization_doublenull[1-1-3-4-lower_boundaries8-upper_boundaries8] 0.01s call xbout/tests/test_load.py::TestTrim::test_keep_yboundaries_doublenull_by_filenum[False-2-True-False] (1662 durations < 0.005s hidden. Use -vv to show these durations.) =========================== short test summary info ============================ FAILED xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_single_file FAILED xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_multiple_files_along_x FAILED xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_multiple_files_along_y FAILED xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_multiple_files_along_xy FAILED xbout/tests/test_against_collect.py::TestAccuracyAgainstOldCollect::test_metadata FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_dataset FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[False-0-0] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[False-0-2] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[False-2-0] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[False-2-2] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[True-0-0] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[True-0-2] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[True-2-0] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_remove_yboundaries[True-2-2] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[False-6] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[False-7] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[False-8] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[False-9] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[True-6] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[True-7] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[True-8] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[True-9] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_dask[False] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_dask[True] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[False-6] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[False-7] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[False-8] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[False-9] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[True-6] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[True-7] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[True-8] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[True-9] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[False-CELL_XLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[False-CELL_YLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[False-CELL_ZLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[True-CELL_XLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[True-CELL_YLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[True-CELL_ZLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[False-CELL_XLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[False-CELL_YLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[False-CELL_ZLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[True-CELL_XLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[True-CELL_YLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[True-CELL_ZLOW] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_core FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_core_change_n[2] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_core_change_n[3] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_core_change_n[7] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_core_change_n[18] FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_sol FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_singlenull FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_sol FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_toroidal_points FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_toroidal_points_list FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_to_cartesian FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_add_cartesian_coordinates FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_ddx FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_ddy FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_ddz FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_derivatives_doublenull FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetIsXarrayDataset::test_concat FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetIsXarrayDataset::test_isel FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_get_field_aligned FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_remove_yboundaries[0-0] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_remove_yboundaries[0-2] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_remove_yboundaries[2-0] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_remove_yboundaries[2-2] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned[6] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned[7] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned[8] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned[9] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned_dask FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned[6] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned[7] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned[8] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned[9] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned_staggered[CELL_XLOW] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned_staggered[CELL_YLOW] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned_staggered[CELL_ZLOW] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned_staggered[CELL_XLOW] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned_staggered[CELL_YLOW] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned_staggered[CELL_ZLOW] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-False-guards0] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-False-guards1] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-False-guards2] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-False-guards3] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-False-guards0] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-False-guards1] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-False-guards2] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-False-guards3] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-True-guards0] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-True-guards1] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-True-guards2] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-False-True-guards3] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-True-guards0] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-True-guards1] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-True-guards2] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-True-guards3] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-False-guards0] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-False-guards1] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-False-guards2] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-False-guards3] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-False-guards0] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-False-guards1] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-False-guards2] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-False-guards3] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-True-guards0] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-True-guards1] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-True-guards2] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-False-True-guards3] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-True-guards0] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-True-guards1] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-True-guards2] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate1-True-True-guards3] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel_all_variables_arg FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel_limiter FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_slab FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_CENTRE] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_XLOW] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_YLOW] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_integrate_midpoints_salpha[CELL_ZLOW] FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_from_unstructured FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_from_unstructured_unstructured_output FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_to_cartesian FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_add_cartesian_coordinates FAILED xbout/tests/test_boutdataset.py::TestSave::test_save_all - ValueError:... FAILED xbout/tests/test_boutdataset.py::TestSave::test_reload_all[None] - Val... FAILED xbout/tests/test_boutdataset.py::TestSave::test_reload_all[toroidal] FAILED xbout/tests/test_boutdataset.py::TestSave::test_save_dtype[False-float64] FAILED xbout/tests/test_boutdataset.py::TestSave::test_save_dtype[False-float32] FAILED xbout/tests/test_boutdataset.py::TestSave::test_save_dtype[True-float64] FAILED xbout/tests/test_boutdataset.py::TestSave::test_save_dtype[True-float32] FAILED xbout/tests/test_boutdataset.py::TestSave::test_save_separate_variables FAILED xbout/tests/test_boutdataset.py::TestSave::test_reload_separate_variables[None] FAILED xbout/tests/test_boutdataset.py::TestSave::test_reload_separate_variables[toroidal] FAILED xbout/tests/test_boutdataset.py::TestSave::test_reload_separate_variables_time_split[None] FAILED xbout/tests/test_boutdataset.py::TestSave::test_reload_separate_variables_time_split[toroidal] FAILED xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart[None] FAILED xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart[1] FAILED xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart_change_npe FAILED xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart_change_npe_doublenull FAILED xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart_change_npe_doublenull_expect_fail[npes0] FAILED xbout/tests/test_boutdataset.py::TestSaveRestart::test_to_restart_change_npe_doublenull_expect_fail[npes1] FAILED xbout/tests/test_load.py::TestOpen::test_single_file - ValueError: dim... FAILED xbout/tests/test_load.py::TestOpen::test_squashed_file - ValueError: d... FAILED xbout/tests/test_load.py::TestOpen::test_squashed_doublenull[False-False] FAILED xbout/tests/test_load.py::TestOpen::test_squashed_doublenull[False-True] FAILED xbout/tests/test_load.py::TestOpen::test_squashed_doublenull[True-False] FAILED xbout/tests/test_load.py::TestOpen::test_squashed_doublenull[True-True] FAILED xbout/tests/test_load.py::TestOpen::test_squashed_doublenull_file[False-False] FAILED xbout/tests/test_load.py::TestOpen::test_squashed_doublenull_file[False-True] FAILED xbout/tests/test_load.py::TestOpen::test_squashed_doublenull_file[True-False] FAILED xbout/tests/test_load.py::TestOpen::test_squashed_doublenull_file[True-True] FAILED xbout/tests/test_load.py::TestOpen::test_combine_along_x - ValueError:... FAILED xbout/tests/test_load.py::TestOpen::test_combine_along_y - ValueError:... FAILED xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths0-False-False] FAILED xbout/tests/test_load.py::TestOpen::test_combine_along_xy[lengths0-True-False] FAILED xbout/tests/test_load.py::TestOpen::test_toroidal - ValueError: dimens... FAILED xbout/tests/test_load.py::TestOpen::test_salpha - ValueError: dimensio... FAILED xbout/tests/test_load.py::TestOpen::test_drop_vars - ValueError: dimen... FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-False-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-0-True-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-False-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-1-True-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-False-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[lower-disconnected-double-null-2-True-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-False-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-0-True-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-False-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-1-True-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-False-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_disconnecteddoublenull[upper-disconnected-double-null-2-True-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-False-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[0-True-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-False-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[1-True-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-False-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-False-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-False-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-False-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-False-True-guards3] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-True-guards0] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-True-guards1] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-True-guards2] FAILED xbout/tests/test_plot.py::TestPlot::test_region_limiter[2-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_core[True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_sol[True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[0-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_limiter[1-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_xpoint[True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_singlenull[True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_connecteddoublenull[True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[lower-disconnected-double-null-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull[upper-disconnected-double-null-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-0-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards1-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards2-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-with_guards3-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[lower-disconnected-double-null-1-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-0-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards1-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards2-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-with_guards3-True-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-False-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-False-True-guards3] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards0] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards1] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards2] FAILED xbout/tests/test_region.py::TestRegion::test_region_disconnecteddoublenull_get_one_guard[upper-disconnected-double-null-1-True-True-guards3] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate2D - ValueError: ... ERROR xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls0] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls1] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls2] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls3] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls4] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate2D_controls_arg[controls5] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate1D - ValueError: ... ERROR xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls0] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls1] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls2] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls3] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls4] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate1D_controls_arg[controls5] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list - ValueErro... ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_1d_default ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_1d_multiline ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_animate_over ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_save_as - V... ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_fps - Value... ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_nrows - Val... ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_ncols - Val... ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_not_enough_nrowsncols ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_subplots_adjust ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_vmin - Valu... ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_vmin_list ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_vmax - Valu... ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_vmax_list ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_logscale - ... ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_logscale_float ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_logscale_list ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_titles_list ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls0] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls1] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls2] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls3] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls4] ERROR xbout/tests/test_animate.py::TestAnimate::test_animate_list_controls_arg[controls5] = 609 failed, 144 passed, 5 skipped, 1718 warnings, 38 errors in 238.01s (0:03:58) = RPM build errors: error: Bad exit status from /var/tmp/rpm-tmp.7WhYXm (%check) Bad exit status from /var/tmp/rpm-tmp.7WhYXm (%check) Finish: rpmbuild python-xbout-0.3.6-6.fc44.src.rpm Finish: build phase for python-xbout-0.3.6-6.fc44.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1757333401.214824/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names ERROR: Exception(/var/lib/copr-rpmbuild/results/python-xbout-0.3.6-6.fc44.src.rpm) Config(fedora-rawhide-x86_64) 4 minutes 42 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_failure=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot ERROR: Command failed: # /usr/bin/systemd-nspawn -q -M 032c8426de5f44299f916d0e3a4a516b -D /var/lib/mock/fedora-rawhide-x86_64-1757333401.214824/root -a -u mockbuild --capability=cap_ipc_lock --rlimit=RLIMIT_NOFILE=10240 --capability=cap_ipc_lock --bind=/tmp/mock-resolv.muc_pzne:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin '--setenv=PROMPT_COMMAND=printf "\033]0;\007"' '--setenv=PS1= \s-\v\$ ' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c '/usr/bin/rpmbuild -ba --noprep --target x86_64 /builddir/build/originals/python-xbout.spec' Copr build error: Build failed