Warning: Permanently added '44.201.104.87' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/9984359-centos-stream-9-x86_64 --chroot centos-stream-9-x86_64 Version: 1.6 PID: 8839 Logging PID: 8841 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 9984359, 'buildroot_pkgs': [], 'chroot': 'centos-stream-9-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'f52c37151a9e4866c034b8e0a2f19f1fb47a2a42', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/devesh176/gpos/R', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R', 'package_version': '4.5.2-1.el9.1.eel9', 'project_dirname': 'gpos', 'project_name': 'gpos', 'project_owner': 'devesh176', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/devesh176/gpos/centos-stream-9-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'https://mirror.stream.centos.org/9-stream/CRB/x86_64/os/', 'id': 'https_mirror_stream_centos_org_9_stream_CRB_x86_64_os', 'name': 'Additional repo https_mirror_stream_centos_org_9_stream_CRB_x86_64_os'}, {'baseurl': 'https://mirror.stream.centos.org/9-stream/AppStream/x86_64/os/', 'id': 'https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os', 'name': 'Additional repo https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os'}, {'baseurl': 'https://mirror.stream.centos.org/9-stream/BaseOS/x86_64/os/', 'id': 'https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os', 'name': 'Additional repo https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os'}, {'baseurl': 'https://dl.fedoraproject.org/pub/epel/9/Everything/x86_64/', 'id': 'https_dl_fedoraproject_org_pub_epel_9_Everything_x86_64', 'name': 'Additional repo https_dl_fedoraproject_org_pub_epel_9_Everything_x86_64'}, {'baseurl': 'https://dl.fedoraproject.org/pub/epel/next/9/Everything/x86_64/', 'id': 'https_dl_fedoraproject_org_pub_epel_next_9_Everything_x86_64', 'name': 'Additional repo https_dl_fedoraproject_org_pub_epel_next_9_Everything_x86_64'}, {'baseurl': 'https://yum.oracle.com/repo/OracleLinux/OL9/distro/builder/x86_64/', 'id': 'https_yum_oracle_com_repo_OracleLinux_OL9_distro_builder_x86_64', 'name': 'Additional repo https_yum_oracle_com_repo_OracleLinux_OL9_distro_builder_x86_64'}], 'sandbox': 'devesh176/gpos--devesh176', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'devesh176', 'tags': [], 'task_id': '9984359-centos-stream-9-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/devesh176/gpos/R /var/lib/copr-rpmbuild/workspace/workdir-6zf78yc8/R --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/devesh176/gpos/R', '/var/lib/copr-rpmbuild/workspace/workdir-6zf78yc8/R', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-6zf78yc8/R'... Running: git checkout f52c37151a9e4866c034b8e0a2f19f1fb47a2a42 -- cmd: ['git', 'checkout', 'f52c37151a9e4866c034b8e0a2f19f1fb47a2a42', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-6zf78yc8/R rc: 0 stdout: stderr: Note: switching to 'f52c37151a9e4866c034b8e0a2f19f1fb47a2a42'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at f52c371 automatic import of R Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-6zf78yc8/R rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading R-4.5.2.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o R-4.5.2.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/devesh176/gpos/R/R-4.5.2.tar.gz/md5/12a63b32a9ec2f7392800e97d792e2aa/R-4.5.2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 39.2M 100 39.2M 0 0 450M 0 --:--:-- --:--:-- --:--:-- 445M INFO: Reading stdout from command: md5sum R-4.5.2.tar.gz tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-6zf78yc8/R/R.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-6zf78yc8/R --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1767858965.000347 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.6 starting (python version = 3.13.7, NVR = mock-6.6-1.fc42), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-6zf78yc8/R/R.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-6zf78yc8/R --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1767858965.000347 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-6zf78yc8/R/R.spec) Config(centos-stream-9-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.6 INFO: Mock Version: 6.6 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/centos-stream-9-x86_64-bootstrap-1767858965.000347/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: quay.io/centos/centos:stream9 INFO: Pulling image: quay.io/centos/centos:stream9 INFO: Tagging container image as mock-bootstrap-8d34827f-886d-4318-aa9f-58f625d47627 INFO: Checking that ff3266f2a5db447df6799087503cdddca0680f26829776c03aad59aa398d7668 image matches host's architecture INFO: Copy content of container ff3266f2a5db447df6799087503cdddca0680f26829776c03aad59aa398d7668 to /var/lib/mock/centos-stream-9-x86_64-bootstrap-1767858965.000347/root INFO: mounting ff3266f2a5db447df6799087503cdddca0680f26829776c03aad59aa398d7668 with podman image mount INFO: image ff3266f2a5db447df6799087503cdddca0680f26829776c03aad59aa398d7668 as /var/lib/containers/storage/overlay/d27763788cce2b65b56e39c9452f21b1895f72ceea87a7c39e0993a0f1e23f77/merged INFO: umounting image ff3266f2a5db447df6799087503cdddca0680f26829776c03aad59aa398d7668 (/var/lib/containers/storage/overlay/d27763788cce2b65b56e39c9452f21b1895f72ceea87a7c39e0993a0f1e23f77/merged) with podman image umount INFO: Removing image mock-bootstrap-8d34827f-886d-4318-aa9f-58f625d47627 INFO: Package manager dnf4 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/centos-stream-9-x86_64-1767858965.000347/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf4 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.16.1.3-40.el9.x86_64 python3-dnf-4.14.0-31.el9.noarch python3-dnf-plugins-core-4.3.0-25.el9.noarch yum-4.14.0-31.el9.noarch Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 1.9 MB/s | 435 kB 00:00 Additional repo https_mirror_stream_centos_org_ 115 MB/s | 7.4 MB 00:00 Additional repo https_mirror_stream_centos_org_ 257 MB/s | 26 MB 00:00 Additional repo https_mirror_stream_centos_org_ 94 MB/s | 8.8 MB 00:00 Additional repo https_dl_fedoraproject_org_pub_ 45 MB/s | 20 MB 00:00 Additional repo https_dl_fedoraproject_org_pub_ 1.8 MB/s | 259 kB 00:00 Additional repo https_yum_oracle_com_repo_Oracl 33 MB/s | 1.8 MB 00:00 CentOS Stream 9 - BaseOS 16 MB/s | 8.8 MB 00:00 CentOS Stream 9 - AppStream 44 MB/s | 26 MB 00:00 CentOS Stream 9 - CRB 1.0 MB/s | 7.4 MB 00:07 CentOS Stream 9 - Extras packages 73 kB/s | 20 kB 00:00 Dependencies resolved. =================================================================================================================================== Package Arch Version Repository Size =================================================================================================================================== Installing: bash x86_64 5.1.8-9.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 1.7 M bzip2 x86_64 1.0.8-10.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 56 k centos-stream-release noarch 9.0-34.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 24 k coreutils x86_64 8.32-39.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 1.2 M cpio x86_64 2.13-16.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 275 k diffutils x86_64 3.7-12.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 397 k findutils x86_64 1:4.8.0-7.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 547 k gawk x86_64 5.1.0-6.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 1.0 M glibc-minimal-langpack x86_64 2.34-245.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 22 k grep x86_64 3.6-5.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 269 k gzip x86_64 1.12-1.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 163 k info x86_64 6.7-15.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 225 k make x86_64 1:4.3-8.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 536 k patch x86_64 2.7.6-16.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 128 k redhat-rpm-config noarch 210-1.el9.1.eel9 copr_base 64 k rpm-build x86_64 4.16.1.3-40.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 66 k sed x86_64 4.8-9.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 305 k tar x86_64 2:1.34-9.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 885 k unzip x86_64 6.0-59.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 182 k util-linux x86_64 2.37.4-21.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 2.3 M which x86_64 2.21-30.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 41 k xz x86_64 5.2.5-8.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 226 k Installing dependencies: alternatives x86_64 1.24-2.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 39 k audit-libs x86_64 3.1.5-7.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 119 k basesystem noarch 11-13.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 3.9 k binutils x86_64 2.35.2-69.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 4.6 M binutils-gold x86_64 2.35.2-69.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 734 k bzip2-libs x86_64 1.0.8-10.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 40 k ca-certificates noarch 2025.2.80_v9.0.305-91.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 1.0 M centos-gpg-keys noarch 9.0-34.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 24 k centos-stream-repos noarch 9.0-34.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 8.8 k coreutils-common x86_64 8.32-39.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 2.0 M cracklib x86_64 2.9.6-27.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 94 k cracklib-dicts x86_64 2.9.6-27.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 3.6 M crypto-policies noarch 20251126-1.gite9c4db2.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 89 k curl x86_64 7.76.1-38.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 292 k cyrus-sasl-lib x86_64 2.1.27-21.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 769 k debugedit x86_64 5.0-11.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 77 k dwz x86_64 0.16-1.el9.1.eel9 copr_base 133 k ed x86_64 1.14.2-12.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 75 k efi-srpm-macros noarch 6-4.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 21 k elfutils x86_64 0.194-1.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 603 k elfutils-debuginfod-client x86_64 0.194-1.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 43 k elfutils-default-yama-scope noarch 0.194-1.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 8.7 k elfutils-libelf x86_64 0.194-1.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 201 k elfutils-libs x86_64 0.194-1.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 268 k file x86_64 5.39-16.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 50 k file-libs x86_64 5.39-16.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 589 k filesystem x86_64 3.16-5.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 4.8 M fonts-srpm-macros noarch 1:2.0.5-7.el9.1 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 28 k gdb-minimal x86_64 16.3-2.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 4.4 M gdbm-libs x86_64 1:1.23-1.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 56 k ghc-srpm-macros noarch 1.5.0-6.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 8.8 k glibc x86_64 2.34-245.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 2.0 M glibc-common x86_64 2.34-245.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 306 k glibc-gconv-extra x86_64 2.34-245.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 1.7 M gmp x86_64 1:6.2.0-13.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 315 k go-srpm-macros noarch 3.8.1-1.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 27 k groff-base x86_64 1.22.4-10.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 1.1 M json-c x86_64 0.14-11.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 43 k kernel-srpm-macros noarch 1.0-14.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 14 k keyutils-libs x86_64 1.6.3-1.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 32 k krb5-libs x86_64 1.21.1-8.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 766 k libacl x86_64 2.3.1-4.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 23 k libarchive x86_64 3.5.3-6.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 387 k libattr x86_64 2.5.1-3.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 19 k libblkid x86_64 2.37.4-21.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 107 k libbrotli x86_64 1.0.9-7.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 313 k libcap x86_64 2.48-10.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 70 k libcap-ng x86_64 0.8.2-7.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 33 k libcom_err x86_64 1.46.5-8.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 26 k libcurl x86_64 7.76.1-38.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 283 k libdb x86_64 5.3.28-57.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 735 k libeconf x86_64 0.4.1-5.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 26 k libevent x86_64 2.1.12-8.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 262 k libfdisk x86_64 2.37.4-21.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 154 k libffi x86_64 3.4.2-8.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 38 k libgcc x86_64 11.5.0-14.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 85 k libgcrypt x86_64 1.10.0-11.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 508 k libgomp x86_64 11.5.0-14.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 257 k libgpg-error x86_64 1.42-5.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 216 k libidn2 x86_64 2.3.0-7.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 101 k libmount x86_64 2.37.4-21.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 135 k libnghttp2 x86_64 1.43.0-6.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 73 k libpkgconf x86_64 1.7.3-10.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 36 k libpsl x86_64 0.21.1-5.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 64 k libpwquality x86_64 1.4.4-8.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 119 k libselinux x86_64 3.6-3.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 86 k libsemanage x86_64 3.6-5.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 118 k libsepol x86_64 3.6-3.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 329 k libsigsegv x86_64 2.13-4.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 27 k libsmartcols x86_64 2.37.4-21.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 63 k libssh x86_64 0.10.4-17.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 213 k libssh-config noarch 0.10.4-17.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 8.0 k libstdc++ x86_64 11.5.0-14.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 742 k libtasn1 x86_64 4.16.0-9.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 74 k libtool-ltdl x86_64 2.4.6-46.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 36 k libunistring x86_64 0.9.10-15.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 496 k libutempter x86_64 1.2.1-6.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 27 k libuuid x86_64 2.37.4-21.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 28 k libverto x86_64 0.3.2-3.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 22 k libxcrypt x86_64 4.4.18-3.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 116 k libxml2 x86_64 2.9.13-14.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 747 k libzstd x86_64 1.5.5-1.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 295 k lua-libs x86_64 5.4.4-4.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 130 k lua-srpm-macros noarch 1-6.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 9.5 k lz4-libs x86_64 1.9.3-5.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 68 k mpfr x86_64 4.1.0-7.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 326 k ncurses x86_64 6.2-12.20210508.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 406 k ncurses-base noarch 6.2-12.20210508.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 95 k ncurses-libs x86_64 6.2-12.20210508.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 328 k ocaml-srpm-macros noarch 6-6.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 8.8 k openblas-srpm-macros noarch 2-11.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 8.4 k openldap x86_64 2.6.8-4.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 285 k openssl x86_64 1:3.5.1-6.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 1.5 M openssl-fips-provider x86_64 1:3.5.1-6.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 812 k openssl-libs x86_64 1:3.5.1-6.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 2.3 M p11-kit x86_64 0.25.10-1.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 561 k p11-kit-trust x86_64 0.25.10-1.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 151 k pam x86_64 1.5.1-28.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 623 k pcre x86_64 8.44-4.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 197 k pcre2 x86_64 10.40-6.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 234 k pcre2-syntax noarch 10.40-6.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 141 k perl-AutoLoader noarch 5.74-483.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 21 k perl-B x86_64 1.80-483.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 180 k perl-Carp noarch 1.50-460.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 30 k perl-Class-Struct noarch 0.66-483.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 22 k perl-Data-Dumper x86_64 2.174-462.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 56 k perl-Digest noarch 1.19-4.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 26 k perl-Digest-MD5 x86_64 2.58-4.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 37 k perl-Encode x86_64 4:3.08-462.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 1.7 M perl-Errno x86_64 1.30-483.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 15 k perl-Exporter noarch 5.74-461.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 32 k perl-Fcntl x86_64 1.13-483.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 20 k perl-File-Basename noarch 2.85-483.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 17 k perl-File-Path noarch 2.18-4.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 36 k perl-File-Temp noarch 1:0.231.100-4.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 60 k perl-File-stat noarch 1.09-483.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 17 k perl-FileHandle noarch 2.03-483.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 15 k perl-Getopt-Long noarch 1:2.52-4.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 61 k perl-Getopt-Std noarch 1.12-483.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 15 k perl-HTTP-Tiny noarch 0.076-462.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 54 k perl-IO x86_64 1.43-483.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 88 k perl-IO-Socket-IP noarch 0.41-5.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 43 k perl-IO-Socket-SSL noarch 2.073-2.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 217 k perl-IPC-Open3 noarch 1.21-483.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 22 k perl-MIME-Base64 x86_64 3.16-4.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 31 k perl-Mozilla-CA noarch 20200520-6.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 13 k perl-Net-SSLeay x86_64 1.94-3.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 414 k perl-POSIX x86_64 1.94-483.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 96 k perl-PathTools x86_64 3.78-461.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 88 k perl-Pod-Escapes noarch 1:1.07-460.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 21 k perl-Pod-Perldoc noarch 3.28.01-461.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 87 k perl-Pod-Simple noarch 1:3.42-4.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 225 k perl-Pod-Usage noarch 4:2.01-4.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 41 k perl-Scalar-List-Utils x86_64 4:1.56-462.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 71 k perl-SelectSaver noarch 1.02-483.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 11 k perl-Socket x86_64 4:2.031-4.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 56 k perl-Storable x86_64 1:3.21-460.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 96 k perl-Symbol noarch 1.08-483.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 14 k perl-Term-ANSIColor noarch 5.01-461.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 49 k perl-Term-Cap noarch 1.17-460.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 23 k perl-Text-ParseWords noarch 3.30-460.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 17 k perl-Text-Tabs+Wrap noarch 2013.0523-460.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 24 k perl-Time-Local noarch 2:1.300-7.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 34 k perl-URI noarch 5.09-3.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 121 k perl-base noarch 2.27-483.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 16 k perl-constant noarch 1.33-461.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 24 k perl-if noarch 0.60.800-483.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 14 k perl-interpreter x86_64 4:5.32.1-483.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 70 k perl-libnet noarch 3.13-4.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 130 k perl-libs x86_64 4:5.32.1-483.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 2.2 M perl-mro x86_64 1.23-483.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 28 k perl-overload noarch 1.31-483.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 45 k perl-overloading noarch 0.02-483.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 12 k perl-parent noarch 1:0.238-460.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 15 k perl-podlators noarch 1:4.14-460.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 114 k perl-srpm-macros noarch 1-41.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 9.1 k perl-subs noarch 1.03-483.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 11 k perl-vars noarch 1.05-483.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 13 k pkgconf x86_64 1.7.3-10.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 41 k pkgconf-m4 noarch 1.7.3-10.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 15 k pkgconf-pkg-config x86_64 1.7.3-10.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 11 k popt x86_64 1.18-8.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 65 k publicsuffix-list-dafsa noarch 20210518-3.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 58 k pyproject-srpm-macros noarch 1.18.5-1.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 12 k python-srpm-macros noarch 3.9-54.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 18 k qt5-srpm-macros noarch 5.15.9-1.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 8.8 k readline x86_64 8.1-4.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 212 k rpm x86_64 4.16.1.3-40.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 535 k rpm-build-libs x86_64 4.16.1.3-40.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 88 k rpm-libs x86_64 4.16.1.3-40.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 307 k rust-srpm-macros noarch 17-4.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 10 k setup noarch 2.13.7-10.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 146 k shadow-utils x86_64 2:4.9-16.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 1.2 M sqlite-libs x86_64 3.34.1-9.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 642 k systemd-libs x86_64 252-64.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 674 k tzdata noarch 2025c-1.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 903 k util-linux-core x86_64 2.37.4-21.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 465 k xz-libs x86_64 5.2.5-8.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 93 k zip x86_64 3.0-35.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 266 k zlib x86_64 1.2.11-41.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 91 k zstd x86_64 1.5.5-1.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 464 k Transaction Summary =================================================================================================================================== Install 203 Packages Total download size: 70 M Installed size: 225 M Downloading Packages: (1/203): redhat-rpm-config-210-1.el9.1.eel9.noa 3.6 MB/s | 64 kB 00:00 (2/203): dwz-0.16-1.el9.1.eel9.x86_64.rpm 7.2 MB/s | 133 kB 00:00 (3/203): debugedit-5.0-11.el9.x86_64.rpm 3.9 MB/s | 77 kB 00:00 (4/203): fonts-srpm-macros-2.0.5-7.el9.1.noarch 12 MB/s | 28 kB 00:00 (5/203): efi-srpm-macros-6-4.el9.noarch.rpm 5.9 MB/s | 21 kB 00:00 (6/203): ghc-srpm-macros-1.5.0-6.el9.noarch.rpm 1.6 MB/s | 8.8 kB 00:00 (7/203): go-srpm-macros-3.8.1-1.el9.noarch.rpm 4.9 MB/s | 27 kB 00:00 (8/203): gdb-minimal-16.3-2.el9.x86_64.rpm 290 MB/s | 4.4 MB 00:00 (9/203): kernel-srpm-macros-1.0-14.el9.noarch.r 1.6 MB/s | 14 kB 00:00 (10/203): lua-srpm-macros-1-6.el9.noarch.rpm 1.2 MB/s | 9.5 kB 00:00 (11/203): ocaml-srpm-macros-6-6.el9.noarch.rpm 3.9 MB/s | 8.8 kB 00:00 (12/203): openblas-srpm-macros-2-11.el9.noarch. 3.3 MB/s | 8.4 kB 00:00 (13/203): patch-2.7.6-16.el9.x86_64.rpm 44 MB/s | 128 kB 00:00 (14/203): perl-Carp-1.50-460.el9.noarch.rpm 8.1 MB/s | 30 kB 00:00 (15/203): perl-AutoLoader-5.74-483.el9.noarch.r 4.1 MB/s | 21 kB 00:00 (16/203): perl-B-1.80-483.el9.x86_64.rpm 35 MB/s | 180 kB 00:00 (17/203): perl-Data-Dumper-2.174-462.el9.x86_64 26 MB/s | 56 kB 00:00 (18/203): perl-Digest-1.19-4.el9.noarch.rpm 12 MB/s | 26 kB 00:00 (19/203): perl-Class-Struct-0.66-483.el9.noarch 5.9 MB/s | 22 kB 00:00 (20/203): perl-Digest-MD5-2.58-4.el9.x86_64.rpm 15 MB/s | 37 kB 00:00 (21/203): perl-Errno-1.30-483.el9.x86_64.rpm 3.0 MB/s | 15 kB 00:00 (22/203): perl-Encode-3.08-462.el9.x86_64.rpm 254 MB/s | 1.7 MB 00:00 (23/203): perl-Exporter-5.74-461.el9.noarch.rpm 7.2 MB/s | 32 kB 00:00 (24/203): perl-File-Path-2.18-4.el9.noarch.rpm 21 MB/s | 36 kB 00:00 (25/203): perl-File-Basename-2.85-483.el9.noarc 7.1 MB/s | 17 kB 00:00 (26/203): perl-File-Temp-0.231.100-4.el9.noarch 29 MB/s | 60 kB 00:00 (27/203): perl-Fcntl-1.13-483.el9.x86_64.rpm 3.2 MB/s | 20 kB 00:00 (28/203): perl-File-stat-1.09-483.el9.noarch.rp 4.6 MB/s | 17 kB 00:00 (29/203): perl-Getopt-Long-2.52-4.el9.noarch.rp 29 MB/s | 61 kB 00:00 (30/203): perl-FileHandle-2.03-483.el9.noarch.r 5.1 MB/s | 15 kB 00:00 (31/203): perl-Getopt-Std-1.12-483.el9.noarch.r 5.4 MB/s | 15 kB 00:00 (32/203): perl-HTTP-Tiny-0.076-462.el9.noarch.r 21 MB/s | 54 kB 00:00 (33/203): perl-IO-Socket-IP-0.41-5.el9.noarch.r 25 MB/s | 43 kB 00:00 (34/203): perl-IO-1.43-483.el9.x86_64.rpm 23 MB/s | 88 kB 00:00 (35/203): perl-IO-Socket-SSL-2.073-2.el9.noarch 69 MB/s | 217 kB 00:00 (36/203): perl-MIME-Base64-3.16-4.el9.x86_64.rp 14 MB/s | 31 kB 00:00 (37/203): perl-Mozilla-CA-20200520-6.el9.noarch 6.4 MB/s | 13 kB 00:00 (38/203): perl-IPC-Open3-1.21-483.el9.noarch.rp 5.3 MB/s | 22 kB 00:00 (39/203): perl-PathTools-3.78-461.el9.x86_64.rp 40 MB/s | 88 kB 00:00 (40/203): perl-POSIX-1.94-483.el9.x86_64.rpm 26 MB/s | 96 kB 00:00 (41/203): perl-Net-SSLeay-1.94-3.el9.x86_64.rpm 74 MB/s | 414 kB 00:00 (42/203): perl-Pod-Escapes-1.07-460.el9.noarch. 8.8 MB/s | 21 kB 00:00 (43/203): perl-Pod-Perldoc-3.28.01-461.el9.noar 43 MB/s | 87 kB 00:00 (44/203): perl-Pod-Simple-3.42-4.el9.noarch.rpm 83 MB/s | 225 kB 00:00 (45/203): perl-Pod-Usage-2.01-4.el9.noarch.rpm 18 MB/s | 41 kB 00:00 (46/203): perl-Scalar-List-Utils-1.56-462.el9.x 22 MB/s | 71 kB 00:00 (47/203): perl-Socket-2.031-4.el9.x86_64.rpm 27 MB/s | 56 kB 00:00 (48/203): perl-SelectSaver-1.02-483.el9.noarch. 4.2 MB/s | 11 kB 00:00 (49/203): perl-Storable-3.21-460.el9.x86_64.rpm 45 MB/s | 96 kB 00:00 (50/203): perl-Term-ANSIColor-5.01-461.el9.noar 27 MB/s | 49 kB 00:00 (51/203): perl-Symbol-1.08-483.el9.noarch.rpm 5.7 MB/s | 14 kB 00:00 (52/203): perl-Term-Cap-1.17-460.el9.noarch.rpm 14 MB/s | 23 kB 00:00 (53/203): perl-Text-ParseWords-3.30-460.el9.noa 8.8 MB/s | 17 kB 00:00 (54/203): perl-Text-Tabs+Wrap-2013.0523-460.el9 12 MB/s | 24 kB 00:00 (55/203): perl-Time-Local-1.300-7.el9.noarch.rp 16 MB/s | 34 kB 00:00 (56/203): perl-URI-5.09-3.el9.noarch.rpm 62 MB/s | 121 kB 00:00 (57/203): perl-base-2.27-483.el9.noarch.rpm 5.3 MB/s | 16 kB 00:00 (58/203): perl-constant-1.33-461.el9.noarch.rpm 12 MB/s | 24 kB 00:00 (59/203): perl-if-0.60.800-483.el9.noarch.rpm 4.7 MB/s | 14 kB 00:00 (60/203): perl-libnet-3.13-4.el9.noarch.rpm 68 MB/s | 130 kB 00:00 (61/203): perl-interpreter-5.32.1-483.el9.x86_6 24 MB/s | 70 kB 00:00 (62/203): perl-mro-1.23-483.el9.x86_64.rpm 10 MB/s | 28 kB 00:00 (63/203): perl-overload-1.31-483.el9.noarch.rpm 14 MB/s | 45 kB 00:00 (64/203): perl-parent-0.238-460.el9.noarch.rpm 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Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.16-5.el9.x86_64 1/1 Preparing : 1/1 Installing : tzdata-2025c-1.el9.noarch 1/203 Installing : publicsuffix-list-dafsa-20210518-3.el9.noarch 2/203 Installing : pkgconf-m4-1.7.3-10.el9.noarch 3/203 Installing : pcre2-syntax-10.40-6.el9.noarch 4/203 Installing : ncurses-base-6.2-12.20210508.el9.noarch 5/203 Installing : libssh-config-0.10.4-17.el9.noarch 6/203 Installing : coreutils-common-8.32-39.el9.x86_64 7/203 Installing : centos-gpg-keys-9.0-34.el9.noarch 8/203 Installing : centos-stream-repos-9.0-34.el9.noarch 9/203 Installing : centos-stream-release-9.0-34.el9.noarch 10/203 Installing : setup-2.13.7-10.el9.noarch 11/203 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.13.7-10.el9.noarch 11/203 Installing : filesystem-3.16-5.el9.x86_64 12/203 Installing : basesystem-11-13.el9.noarch 13/203 Installing : ncurses-libs-6.2-12.20210508.el9.x86_64 14/203 Installing : bash-5.1.8-9.el9.x86_64 15/203 Running 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perl-IO-Socket-IP-0.41-5.el9.noarch 118/203 Installing : perl-Time-Local-2:1.300-7.el9.noarch 119/203 Installing : perl-File-Path-2.18-4.el9.noarch 120/203 Installing : perl-Pod-Escapes-1:1.07-460.el9.noarch 121/203 Installing : perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch 122/203 Installing : perl-IO-Socket-SSL-2.073-2.el9.noarch 123/203 Installing : perl-Net-SSLeay-1.94-3.el9.x86_64 124/203 Installing : perl-Class-Struct-0.66-483.el9.noarch 125/203 Installing : perl-POSIX-1.94-483.el9.x86_64 126/203 Installing : perl-Term-ANSIColor-5.01-461.el9.noarch 127/203 Installing : perl-IPC-Open3-1.21-483.el9.noarch 128/203 Installing : perl-subs-1.03-483.el9.noarch 129/203 Installing : perl-File-Temp-1:0.231.100-4.el9.noarch 130/203 Installing : perl-Term-Cap-1.17-460.el9.noarch 131/203 Installing : perl-Pod-Simple-1:3.42-4.el9.noarch 132/203 Installing : perl-HTTP-Tiny-0.076-462.el9.noarch 133/203 Installing : perl-Socket-4:2.031-4.el9.x86_64 134/203 Installing : perl-SelectSaver-1.02-483.el9.noarch 135/203 Installing : perl-Symbol-1.08-483.el9.noarch 136/203 Installing : perl-File-stat-1.09-483.el9.noarch 137/203 Installing : perl-podlators-1:4.14-460.el9.noarch 138/203 Installing : perl-Pod-Perldoc-3.28.01-461.el9.noarch 139/203 Installing : perl-Fcntl-1.13-483.el9.x86_64 140/203 Installing : perl-Text-ParseWords-3.30-460.el9.noarch 141/203 Installing : perl-mro-1.23-483.el9.x86_64 142/203 Installing : perl-IO-1.43-483.el9.x86_64 143/203 Installing : perl-overloading-0.02-483.el9.noarch 144/203 Installing : perl-Pod-Usage-4:2.01-4.el9.noarch 145/203 Installing : perl-Errno-1.30-483.el9.x86_64 146/203 Installing : perl-File-Basename-2.85-483.el9.noarch 147/203 Installing : perl-Getopt-Std-1.12-483.el9.noarch 148/203 Installing : perl-MIME-Base64-3.16-4.el9.x86_64 149/203 Installing : perl-Scalar-List-Utils-4:1.56-462.el9.x86_64 150/203 Installing : perl-constant-1.33-461.el9.noarch 151/203 Installing : perl-Storable-1:3.21-460.el9.x86_64 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elfutils-0.194-1.el9.x86_64 186/203 Installing : debugedit-5.0-11.el9.x86_64 187/203 Installing : rpm-build-libs-4.16.1.3-40.el9.x86_64 188/203 Installing : rust-srpm-macros-17-4.el9.noarch 189/203 Installing : qt5-srpm-macros-5.15.9-1.el9.noarch 190/203 Installing : perl-srpm-macros-1-41.el9.noarch 191/203 Installing : openblas-srpm-macros-2-11.el9.noarch 192/203 Installing : ocaml-srpm-macros-6-6.el9.noarch 193/203 Installing : ghc-srpm-macros-1.5.0-6.el9.noarch 194/203 Installing : fonts-srpm-macros-1:2.0.5-7.el9.1.noarch 195/203 Installing : go-srpm-macros-3.8.1-1.el9.noarch 196/203 Installing : python-srpm-macros-3.9-54.el9.noarch 197/203 Installing : redhat-rpm-config-210-1.el9.1.eel9.noarch 198/203 Installing : rpm-build-4.16.1.3-40.el9.x86_64 199/203 Installing : pyproject-srpm-macros-1.18.5-1.el9.noarch 200/203 Installing : util-linux-2.37.4-21.el9.x86_64 201/203 Installing : make-1:4.3-8.el9.x86_64 202/203 Installing : which-2.21-30.el9.x86_64 203/203 Running scriptlet: filesystem-3.16-5.el9.x86_64 203/203 Running scriptlet: ca-certificates-2025.2.80_v9.0.305-91.el9.noarch 203/203 Running scriptlet: rpm-4.16.1.3-40.el9.x86_64 203/203 Running scriptlet: which-2.21-30.el9.x86_64 203/203 Verifying : dwz-0.16-1.el9.1.eel9.x86_64 1/203 Verifying : redhat-rpm-config-210-1.el9.1.eel9.noarch 2/203 Verifying : debugedit-5.0-11.el9.x86_64 3/203 Verifying : efi-srpm-macros-6-4.el9.noarch 4/203 Verifying : fonts-srpm-macros-1:2.0.5-7.el9.1.noarch 5/203 Verifying : gdb-minimal-16.3-2.el9.x86_64 6/203 Verifying : ghc-srpm-macros-1.5.0-6.el9.noarch 7/203 Verifying : go-srpm-macros-3.8.1-1.el9.noarch 8/203 Verifying : kernel-srpm-macros-1.0-14.el9.noarch 9/203 Verifying : lua-srpm-macros-1-6.el9.noarch 10/203 Verifying : ocaml-srpm-macros-6-6.el9.noarch 11/203 Verifying : openblas-srpm-macros-2-11.el9.noarch 12/203 Verifying : patch-2.7.6-16.el9.x86_64 13/203 Verifying : perl-AutoLoader-5.74-483.el9.noarch 14/203 Verifying : perl-B-1.80-483.el9.x86_64 15/203 Verifying : perl-Carp-1.50-460.el9.noarch 16/203 Verifying : perl-Class-Struct-0.66-483.el9.noarch 17/203 Verifying : perl-Data-Dumper-2.174-462.el9.x86_64 18/203 Verifying : perl-Digest-1.19-4.el9.noarch 19/203 Verifying : perl-Digest-MD5-2.58-4.el9.x86_64 20/203 Verifying : perl-Encode-4:3.08-462.el9.x86_64 21/203 Verifying : perl-Errno-1.30-483.el9.x86_64 22/203 Verifying : perl-Exporter-5.74-461.el9.noarch 23/203 Verifying : perl-Fcntl-1.13-483.el9.x86_64 24/203 Verifying : perl-File-Basename-2.85-483.el9.noarch 25/203 Verifying : perl-File-Path-2.18-4.el9.noarch 26/203 Verifying : perl-File-Temp-1:0.231.100-4.el9.noarch 27/203 Verifying : perl-File-stat-1.09-483.el9.noarch 28/203 Verifying : perl-FileHandle-2.03-483.el9.noarch 29/203 Verifying : perl-Getopt-Long-1:2.52-4.el9.noarch 30/203 Verifying : perl-Getopt-Std-1.12-483.el9.noarch 31/203 Verifying : perl-HTTP-Tiny-0.076-462.el9.noarch 32/203 Verifying : perl-IO-1.43-483.el9.x86_64 33/203 Verifying : perl-IO-Socket-IP-0.41-5.el9.noarch 34/203 Verifying : perl-IO-Socket-SSL-2.073-2.el9.noarch 35/203 Verifying : perl-IPC-Open3-1.21-483.el9.noarch 36/203 Verifying : perl-MIME-Base64-3.16-4.el9.x86_64 37/203 Verifying : perl-Mozilla-CA-20200520-6.el9.noarch 38/203 Verifying : perl-Net-SSLeay-1.94-3.el9.x86_64 39/203 Verifying : perl-POSIX-1.94-483.el9.x86_64 40/203 Verifying : perl-PathTools-3.78-461.el9.x86_64 41/203 Verifying : perl-Pod-Escapes-1:1.07-460.el9.noarch 42/203 Verifying : perl-Pod-Perldoc-3.28.01-461.el9.noarch 43/203 Verifying : perl-Pod-Simple-1:3.42-4.el9.noarch 44/203 Verifying : perl-Pod-Usage-4:2.01-4.el9.noarch 45/203 Verifying : perl-Scalar-List-Utils-4:1.56-462.el9.x86_64 46/203 Verifying : perl-SelectSaver-1.02-483.el9.noarch 47/203 Verifying : perl-Socket-4:2.031-4.el9.x86_64 48/203 Verifying : perl-Storable-1:3.21-460.el9.x86_64 49/203 Verifying : perl-Symbol-1.08-483.el9.noarch 50/203 Verifying : perl-Term-ANSIColor-5.01-461.el9.noarch 51/203 Verifying : perl-Term-Cap-1.17-460.el9.noarch 52/203 Verifying : perl-Text-ParseWords-3.30-460.el9.noarch 53/203 Verifying : perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch 54/203 Verifying : perl-Time-Local-2:1.300-7.el9.noarch 55/203 Verifying : perl-URI-5.09-3.el9.noarch 56/203 Verifying : perl-base-2.27-483.el9.noarch 57/203 Verifying : perl-constant-1.33-461.el9.noarch 58/203 Verifying : perl-if-0.60.800-483.el9.noarch 59/203 Verifying : perl-interpreter-4:5.32.1-483.el9.x86_64 60/203 Verifying : perl-libnet-3.13-4.el9.noarch 61/203 Verifying : perl-libs-4:5.32.1-483.el9.x86_64 62/203 Verifying : perl-mro-1.23-483.el9.x86_64 63/203 Verifying : perl-overload-1.31-483.el9.noarch 64/203 Verifying : perl-overloading-0.02-483.el9.noarch 65/203 Verifying : perl-parent-1:0.238-460.el9.noarch 66/203 Verifying : perl-podlators-1:4.14-460.el9.noarch 67/203 Verifying : perl-srpm-macros-1-41.el9.noarch 68/203 Verifying : perl-subs-1.03-483.el9.noarch 69/203 Verifying : perl-vars-1.05-483.el9.noarch 70/203 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89/203 Verifying : cpio-2.13-16.el9.x86_64 90/203 Verifying : cracklib-2.9.6-27.el9.x86_64 91/203 Verifying : cracklib-dicts-2.9.6-27.el9.x86_64 92/203 Verifying : crypto-policies-20251126-1.gite9c4db2.el9.noarch 93/203 Verifying : curl-7.76.1-38.el9.x86_64 94/203 Verifying : cyrus-sasl-lib-2.1.27-21.el9.x86_64 95/203 Verifying : diffutils-3.7-12.el9.x86_64 96/203 Verifying : ed-1.14.2-12.el9.x86_64 97/203 Verifying : elfutils-0.194-1.el9.x86_64 98/203 Verifying : elfutils-debuginfod-client-0.194-1.el9.x86_64 99/203 Verifying : elfutils-default-yama-scope-0.194-1.el9.noarch 100/203 Verifying : elfutils-libelf-0.194-1.el9.x86_64 101/203 Verifying : elfutils-libs-0.194-1.el9.x86_64 102/203 Verifying : file-5.39-16.el9.x86_64 103/203 Verifying : file-libs-5.39-16.el9.x86_64 104/203 Verifying : filesystem-3.16-5.el9.x86_64 105/203 Verifying : findutils-1:4.8.0-7.el9.x86_64 106/203 Verifying : gawk-5.1.0-6.el9.x86_64 107/203 Verifying : gdbm-libs-1:1.23-1.el9.x86_64 108/203 Verifying : glibc-2.34-245.el9.x86_64 109/203 Verifying : glibc-common-2.34-245.el9.x86_64 110/203 Verifying : glibc-gconv-extra-2.34-245.el9.x86_64 111/203 Verifying : glibc-minimal-langpack-2.34-245.el9.x86_64 112/203 Verifying : gmp-1:6.2.0-13.el9.x86_64 113/203 Verifying : grep-3.6-5.el9.x86_64 114/203 Verifying : groff-base-1.22.4-10.el9.x86_64 115/203 Verifying : gzip-1.12-1.el9.x86_64 116/203 Verifying : info-6.7-15.el9.x86_64 117/203 Verifying : json-c-0.14-11.el9.x86_64 118/203 Verifying : keyutils-libs-1.6.3-1.el9.x86_64 119/203 Verifying : krb5-libs-1.21.1-8.el9.x86_64 120/203 Verifying : libacl-2.3.1-4.el9.x86_64 121/203 Verifying : libarchive-3.5.3-6.el9.x86_64 122/203 Verifying : libattr-2.5.1-3.el9.x86_64 123/203 Verifying : libblkid-2.37.4-21.el9.x86_64 124/203 Verifying : libbrotli-1.0.9-7.el9.x86_64 125/203 Verifying : libcap-2.48-10.el9.x86_64 126/203 Verifying : libcap-ng-0.8.2-7.el9.x86_64 127/203 Verifying : libcom_err-1.46.5-8.el9.x86_64 128/203 Verifying : libcurl-7.76.1-38.el9.x86_64 129/203 Verifying : libdb-5.3.28-57.el9.x86_64 130/203 Verifying : libeconf-0.4.1-5.el9.x86_64 131/203 Verifying : libevent-2.1.12-8.el9.x86_64 132/203 Verifying : libfdisk-2.37.4-21.el9.x86_64 133/203 Verifying : libffi-3.4.2-8.el9.x86_64 134/203 Verifying : libgcc-11.5.0-14.el9.x86_64 135/203 Verifying : libgcrypt-1.10.0-11.el9.x86_64 136/203 Verifying : libgomp-11.5.0-14.el9.x86_64 137/203 Verifying : libgpg-error-1.42-5.el9.x86_64 138/203 Verifying : libidn2-2.3.0-7.el9.x86_64 139/203 Verifying : libmount-2.37.4-21.el9.x86_64 140/203 Verifying : libnghttp2-1.43.0-6.el9.x86_64 141/203 Verifying : libpkgconf-1.7.3-10.el9.x86_64 142/203 Verifying : libpsl-0.21.1-5.el9.x86_64 143/203 Verifying : libpwquality-1.4.4-8.el9.x86_64 144/203 Verifying : libselinux-3.6-3.el9.x86_64 145/203 Verifying : libsemanage-3.6-5.el9.x86_64 146/203 Verifying : libsepol-3.6-3.el9.x86_64 147/203 Verifying : libsigsegv-2.13-4.el9.x86_64 148/203 Verifying : libsmartcols-2.37.4-21.el9.x86_64 149/203 Verifying : libssh-0.10.4-17.el9.x86_64 150/203 Verifying : libssh-config-0.10.4-17.el9.noarch 151/203 Verifying : libstdc++-11.5.0-14.el9.x86_64 152/203 Verifying : libtasn1-4.16.0-9.el9.x86_64 153/203 Verifying : libtool-ltdl-2.4.6-46.el9.x86_64 154/203 Verifying : libunistring-0.9.10-15.el9.x86_64 155/203 Verifying : libutempter-1.2.1-6.el9.x86_64 156/203 Verifying : libuuid-2.37.4-21.el9.x86_64 157/203 Verifying : libverto-0.3.2-3.el9.x86_64 158/203 Verifying : libxcrypt-4.4.18-3.el9.x86_64 159/203 Verifying : libxml2-2.9.13-14.el9.x86_64 160/203 Verifying : libzstd-1.5.5-1.el9.x86_64 161/203 Verifying : lua-libs-5.4.4-4.el9.x86_64 162/203 Verifying : lz4-libs-1.9.3-5.el9.x86_64 163/203 Verifying : make-1:4.3-8.el9.x86_64 164/203 Verifying : mpfr-4.1.0-7.el9.x86_64 165/203 Verifying : ncurses-6.2-12.20210508.el9.x86_64 166/203 Verifying : ncurses-base-6.2-12.20210508.el9.noarch 167/203 Verifying : ncurses-libs-6.2-12.20210508.el9.x86_64 168/203 Verifying : openldap-2.6.8-4.el9.x86_64 169/203 Verifying : openssl-1:3.5.1-6.el9.x86_64 170/203 Verifying : openssl-fips-provider-1:3.5.1-6.el9.x86_64 171/203 Verifying : openssl-libs-1:3.5.1-6.el9.x86_64 172/203 Verifying : p11-kit-0.25.10-1.el9.x86_64 173/203 Verifying : p11-kit-trust-0.25.10-1.el9.x86_64 174/203 Verifying : pam-1.5.1-28.el9.x86_64 175/203 Verifying : pcre-8.44-4.el9.x86_64 176/203 Verifying : pcre2-10.40-6.el9.x86_64 177/203 Verifying : pcre2-syntax-10.40-6.el9.noarch 178/203 Verifying : pkgconf-1.7.3-10.el9.x86_64 179/203 Verifying : pkgconf-m4-1.7.3-10.el9.noarch 180/203 Verifying : pkgconf-pkg-config-1.7.3-10.el9.x86_64 181/203 Verifying : popt-1.18-8.el9.x86_64 182/203 Verifying : publicsuffix-list-dafsa-20210518-3.el9.noarch 183/203 Verifying : readline-8.1-4.el9.x86_64 184/203 Verifying : rpm-4.16.1.3-40.el9.x86_64 185/203 Verifying : rpm-build-libs-4.16.1.3-40.el9.x86_64 186/203 Verifying : rpm-libs-4.16.1.3-40.el9.x86_64 187/203 Verifying : sed-4.8-9.el9.x86_64 188/203 Verifying : setup-2.13.7-10.el9.noarch 189/203 Verifying : shadow-utils-2:4.9-16.el9.x86_64 190/203 Verifying : sqlite-libs-3.34.1-9.el9.x86_64 191/203 Verifying : systemd-libs-252-64.el9.x86_64 192/203 Verifying : tar-2:1.34-9.el9.x86_64 193/203 Verifying : tzdata-2025c-1.el9.noarch 194/203 Verifying : unzip-6.0-59.el9.x86_64 195/203 Verifying : util-linux-2.37.4-21.el9.x86_64 196/203 Verifying : util-linux-core-2.37.4-21.el9.x86_64 197/203 Verifying : which-2.21-30.el9.x86_64 198/203 Verifying : xz-5.2.5-8.el9.x86_64 199/203 Verifying : xz-libs-5.2.5-8.el9.x86_64 200/203 Verifying : zip-3.0-35.el9.x86_64 201/203 Verifying : zlib-1.2.11-41.el9.x86_64 202/203 Verifying : zstd-1.5.5-1.el9.x86_64 203/203 Installed: alternatives-1.24-2.el9.x86_64 audit-libs-3.1.5-7.el9.x86_64 basesystem-11-13.el9.noarch bash-5.1.8-9.el9.x86_64 binutils-2.35.2-69.el9.x86_64 binutils-gold-2.35.2-69.el9.x86_64 bzip2-1.0.8-10.el9.x86_64 bzip2-libs-1.0.8-10.el9.x86_64 ca-certificates-2025.2.80_v9.0.305-91.el9.noarch centos-gpg-keys-9.0-34.el9.noarch centos-stream-release-9.0-34.el9.noarch centos-stream-repos-9.0-34.el9.noarch coreutils-8.32-39.el9.x86_64 coreutils-common-8.32-39.el9.x86_64 cpio-2.13-16.el9.x86_64 cracklib-2.9.6-27.el9.x86_64 cracklib-dicts-2.9.6-27.el9.x86_64 crypto-policies-20251126-1.gite9c4db2.el9.noarch curl-7.76.1-38.el9.x86_64 cyrus-sasl-lib-2.1.27-21.el9.x86_64 debugedit-5.0-11.el9.x86_64 diffutils-3.7-12.el9.x86_64 dwz-0.16-1.el9.1.eel9.x86_64 ed-1.14.2-12.el9.x86_64 efi-srpm-macros-6-4.el9.noarch elfutils-0.194-1.el9.x86_64 elfutils-debuginfod-client-0.194-1.el9.x86_64 elfutils-default-yama-scope-0.194-1.el9.noarch elfutils-libelf-0.194-1.el9.x86_64 elfutils-libs-0.194-1.el9.x86_64 file-5.39-16.el9.x86_64 file-libs-5.39-16.el9.x86_64 filesystem-3.16-5.el9.x86_64 findutils-1:4.8.0-7.el9.x86_64 fonts-srpm-macros-1:2.0.5-7.el9.1.noarch gawk-5.1.0-6.el9.x86_64 gdb-minimal-16.3-2.el9.x86_64 gdbm-libs-1:1.23-1.el9.x86_64 ghc-srpm-macros-1.5.0-6.el9.noarch glibc-2.34-245.el9.x86_64 glibc-common-2.34-245.el9.x86_64 glibc-gconv-extra-2.34-245.el9.x86_64 glibc-minimal-langpack-2.34-245.el9.x86_64 gmp-1:6.2.0-13.el9.x86_64 go-srpm-macros-3.8.1-1.el9.noarch grep-3.6-5.el9.x86_64 groff-base-1.22.4-10.el9.x86_64 gzip-1.12-1.el9.x86_64 info-6.7-15.el9.x86_64 json-c-0.14-11.el9.x86_64 kernel-srpm-macros-1.0-14.el9.noarch keyutils-libs-1.6.3-1.el9.x86_64 krb5-libs-1.21.1-8.el9.x86_64 libacl-2.3.1-4.el9.x86_64 libarchive-3.5.3-6.el9.x86_64 libattr-2.5.1-3.el9.x86_64 libblkid-2.37.4-21.el9.x86_64 libbrotli-1.0.9-7.el9.x86_64 libcap-2.48-10.el9.x86_64 libcap-ng-0.8.2-7.el9.x86_64 libcom_err-1.46.5-8.el9.x86_64 libcurl-7.76.1-38.el9.x86_64 libdb-5.3.28-57.el9.x86_64 libeconf-0.4.1-5.el9.x86_64 libevent-2.1.12-8.el9.x86_64 libfdisk-2.37.4-21.el9.x86_64 libffi-3.4.2-8.el9.x86_64 libgcc-11.5.0-14.el9.x86_64 libgcrypt-1.10.0-11.el9.x86_64 libgomp-11.5.0-14.el9.x86_64 libgpg-error-1.42-5.el9.x86_64 libidn2-2.3.0-7.el9.x86_64 libmount-2.37.4-21.el9.x86_64 libnghttp2-1.43.0-6.el9.x86_64 libpkgconf-1.7.3-10.el9.x86_64 libpsl-0.21.1-5.el9.x86_64 libpwquality-1.4.4-8.el9.x86_64 libselinux-3.6-3.el9.x86_64 libsemanage-3.6-5.el9.x86_64 libsepol-3.6-3.el9.x86_64 libsigsegv-2.13-4.el9.x86_64 libsmartcols-2.37.4-21.el9.x86_64 libssh-0.10.4-17.el9.x86_64 libssh-config-0.10.4-17.el9.noarch libstdc++-11.5.0-14.el9.x86_64 libtasn1-4.16.0-9.el9.x86_64 libtool-ltdl-2.4.6-46.el9.x86_64 libunistring-0.9.10-15.el9.x86_64 libutempter-1.2.1-6.el9.x86_64 libuuid-2.37.4-21.el9.x86_64 libverto-0.3.2-3.el9.x86_64 libxcrypt-4.4.18-3.el9.x86_64 libxml2-2.9.13-14.el9.x86_64 libzstd-1.5.5-1.el9.x86_64 lua-libs-5.4.4-4.el9.x86_64 lua-srpm-macros-1-6.el9.noarch lz4-libs-1.9.3-5.el9.x86_64 make-1:4.3-8.el9.x86_64 mpfr-4.1.0-7.el9.x86_64 ncurses-6.2-12.20210508.el9.x86_64 ncurses-base-6.2-12.20210508.el9.noarch ncurses-libs-6.2-12.20210508.el9.x86_64 ocaml-srpm-macros-6-6.el9.noarch openblas-srpm-macros-2-11.el9.noarch openldap-2.6.8-4.el9.x86_64 openssl-1:3.5.1-6.el9.x86_64 openssl-fips-provider-1:3.5.1-6.el9.x86_64 openssl-libs-1:3.5.1-6.el9.x86_64 p11-kit-0.25.10-1.el9.x86_64 p11-kit-trust-0.25.10-1.el9.x86_64 pam-1.5.1-28.el9.x86_64 patch-2.7.6-16.el9.x86_64 pcre-8.44-4.el9.x86_64 pcre2-10.40-6.el9.x86_64 pcre2-syntax-10.40-6.el9.noarch perl-AutoLoader-5.74-483.el9.noarch perl-B-1.80-483.el9.x86_64 perl-Carp-1.50-460.el9.noarch perl-Class-Struct-0.66-483.el9.noarch perl-Data-Dumper-2.174-462.el9.x86_64 perl-Digest-1.19-4.el9.noarch perl-Digest-MD5-2.58-4.el9.x86_64 perl-Encode-4:3.08-462.el9.x86_64 perl-Errno-1.30-483.el9.x86_64 perl-Exporter-5.74-461.el9.noarch perl-Fcntl-1.13-483.el9.x86_64 perl-File-Basename-2.85-483.el9.noarch perl-File-Path-2.18-4.el9.noarch perl-File-Temp-1:0.231.100-4.el9.noarch perl-File-stat-1.09-483.el9.noarch perl-FileHandle-2.03-483.el9.noarch perl-Getopt-Long-1:2.52-4.el9.noarch perl-Getopt-Std-1.12-483.el9.noarch perl-HTTP-Tiny-0.076-462.el9.noarch perl-IO-1.43-483.el9.x86_64 perl-IO-Socket-IP-0.41-5.el9.noarch perl-IO-Socket-SSL-2.073-2.el9.noarch perl-IPC-Open3-1.21-483.el9.noarch perl-MIME-Base64-3.16-4.el9.x86_64 perl-Mozilla-CA-20200520-6.el9.noarch perl-Net-SSLeay-1.94-3.el9.x86_64 perl-POSIX-1.94-483.el9.x86_64 perl-PathTools-3.78-461.el9.x86_64 perl-Pod-Escapes-1:1.07-460.el9.noarch perl-Pod-Perldoc-3.28.01-461.el9.noarch perl-Pod-Simple-1:3.42-4.el9.noarch perl-Pod-Usage-4:2.01-4.el9.noarch perl-Scalar-List-Utils-4:1.56-462.el9.x86_64 perl-SelectSaver-1.02-483.el9.noarch perl-Socket-4:2.031-4.el9.x86_64 perl-Storable-1:3.21-460.el9.x86_64 perl-Symbol-1.08-483.el9.noarch perl-Term-ANSIColor-5.01-461.el9.noarch perl-Term-Cap-1.17-460.el9.noarch perl-Text-ParseWords-3.30-460.el9.noarch perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch perl-Time-Local-2:1.300-7.el9.noarch perl-URI-5.09-3.el9.noarch perl-base-2.27-483.el9.noarch perl-constant-1.33-461.el9.noarch perl-if-0.60.800-483.el9.noarch perl-interpreter-4:5.32.1-483.el9.x86_64 perl-libnet-3.13-4.el9.noarch perl-libs-4:5.32.1-483.el9.x86_64 perl-mro-1.23-483.el9.x86_64 perl-overload-1.31-483.el9.noarch perl-overloading-0.02-483.el9.noarch perl-parent-1:0.238-460.el9.noarch perl-podlators-1:4.14-460.el9.noarch perl-srpm-macros-1-41.el9.noarch perl-subs-1.03-483.el9.noarch perl-vars-1.05-483.el9.noarch pkgconf-1.7.3-10.el9.x86_64 pkgconf-m4-1.7.3-10.el9.noarch pkgconf-pkg-config-1.7.3-10.el9.x86_64 popt-1.18-8.el9.x86_64 publicsuffix-list-dafsa-20210518-3.el9.noarch pyproject-srpm-macros-1.18.5-1.el9.noarch python-srpm-macros-3.9-54.el9.noarch qt5-srpm-macros-5.15.9-1.el9.noarch readline-8.1-4.el9.x86_64 redhat-rpm-config-210-1.el9.1.eel9.noarch rpm-4.16.1.3-40.el9.x86_64 rpm-build-4.16.1.3-40.el9.x86_64 rpm-build-libs-4.16.1.3-40.el9.x86_64 rpm-libs-4.16.1.3-40.el9.x86_64 rust-srpm-macros-17-4.el9.noarch sed-4.8-9.el9.x86_64 setup-2.13.7-10.el9.noarch shadow-utils-2:4.9-16.el9.x86_64 sqlite-libs-3.34.1-9.el9.x86_64 systemd-libs-252-64.el9.x86_64 tar-2:1.34-9.el9.x86_64 tzdata-2025c-1.el9.noarch unzip-6.0-59.el9.x86_64 util-linux-2.37.4-21.el9.x86_64 util-linux-core-2.37.4-21.el9.x86_64 which-2.21-30.el9.x86_64 xz-5.2.5-8.el9.x86_64 xz-libs-5.2.5-8.el9.x86_64 zip-3.0-35.el9.x86_64 zlib-1.2.11-41.el9.x86_64 zstd-1.5.5-1.el9.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.24-2.el9.x86_64 audit-libs-3.1.5-7.el9.x86_64 basesystem-11-13.el9.noarch bash-5.1.8-9.el9.x86_64 binutils-2.35.2-69.el9.x86_64 binutils-gold-2.35.2-69.el9.x86_64 bzip2-1.0.8-10.el9.x86_64 bzip2-libs-1.0.8-10.el9.x86_64 ca-certificates-2025.2.80_v9.0.305-91.el9.noarch centos-gpg-keys-9.0-34.el9.noarch centos-stream-release-9.0-34.el9.noarch centos-stream-repos-9.0-34.el9.noarch coreutils-8.32-39.el9.x86_64 coreutils-common-8.32-39.el9.x86_64 cpio-2.13-16.el9.x86_64 cracklib-2.9.6-27.el9.x86_64 cracklib-dicts-2.9.6-27.el9.x86_64 crypto-policies-20251126-1.gite9c4db2.el9.noarch curl-7.76.1-38.el9.x86_64 cyrus-sasl-lib-2.1.27-21.el9.x86_64 debugedit-5.0-11.el9.x86_64 diffutils-3.7-12.el9.x86_64 dwz-0.16-1.el9.1.eel9.x86_64 ed-1.14.2-12.el9.x86_64 efi-srpm-macros-6-4.el9.noarch elfutils-0.194-1.el9.x86_64 elfutils-debuginfod-client-0.194-1.el9.x86_64 elfutils-default-yama-scope-0.194-1.el9.noarch elfutils-libelf-0.194-1.el9.x86_64 elfutils-libs-0.194-1.el9.x86_64 file-5.39-16.el9.x86_64 file-libs-5.39-16.el9.x86_64 filesystem-3.16-5.el9.x86_64 findutils-4.8.0-7.el9.x86_64 fonts-srpm-macros-2.0.5-7.el9.1.noarch gawk-5.1.0-6.el9.x86_64 gdb-minimal-16.3-2.el9.x86_64 gdbm-libs-1.23-1.el9.x86_64 ghc-srpm-macros-1.5.0-6.el9.noarch glibc-2.34-245.el9.x86_64 glibc-common-2.34-245.el9.x86_64 glibc-gconv-extra-2.34-245.el9.x86_64 glibc-minimal-langpack-2.34-245.el9.x86_64 gmp-6.2.0-13.el9.x86_64 go-srpm-macros-3.8.1-1.el9.noarch grep-3.6-5.el9.x86_64 groff-base-1.22.4-10.el9.x86_64 gzip-1.12-1.el9.x86_64 info-6.7-15.el9.x86_64 json-c-0.14-11.el9.x86_64 kernel-srpm-macros-1.0-14.el9.noarch keyutils-libs-1.6.3-1.el9.x86_64 krb5-libs-1.21.1-8.el9.x86_64 libacl-2.3.1-4.el9.x86_64 libarchive-3.5.3-6.el9.x86_64 libattr-2.5.1-3.el9.x86_64 libblkid-2.37.4-21.el9.x86_64 libbrotli-1.0.9-7.el9.x86_64 libcap-2.48-10.el9.x86_64 libcap-ng-0.8.2-7.el9.x86_64 libcom_err-1.46.5-8.el9.x86_64 libcurl-7.76.1-38.el9.x86_64 libdb-5.3.28-57.el9.x86_64 libeconf-0.4.1-5.el9.x86_64 libevent-2.1.12-8.el9.x86_64 libfdisk-2.37.4-21.el9.x86_64 libffi-3.4.2-8.el9.x86_64 libgcc-11.5.0-14.el9.x86_64 libgcrypt-1.10.0-11.el9.x86_64 libgomp-11.5.0-14.el9.x86_64 libgpg-error-1.42-5.el9.x86_64 libidn2-2.3.0-7.el9.x86_64 libmount-2.37.4-21.el9.x86_64 libnghttp2-1.43.0-6.el9.x86_64 libpkgconf-1.7.3-10.el9.x86_64 libpsl-0.21.1-5.el9.x86_64 libpwquality-1.4.4-8.el9.x86_64 libselinux-3.6-3.el9.x86_64 libsemanage-3.6-5.el9.x86_64 libsepol-3.6-3.el9.x86_64 libsigsegv-2.13-4.el9.x86_64 libsmartcols-2.37.4-21.el9.x86_64 libssh-0.10.4-17.el9.x86_64 libssh-config-0.10.4-17.el9.noarch libstdc++-11.5.0-14.el9.x86_64 libtasn1-4.16.0-9.el9.x86_64 libtool-ltdl-2.4.6-46.el9.x86_64 libunistring-0.9.10-15.el9.x86_64 libutempter-1.2.1-6.el9.x86_64 libuuid-2.37.4-21.el9.x86_64 libverto-0.3.2-3.el9.x86_64 libxcrypt-4.4.18-3.el9.x86_64 libxml2-2.9.13-14.el9.x86_64 libzstd-1.5.5-1.el9.x86_64 lua-libs-5.4.4-4.el9.x86_64 lua-srpm-macros-1-6.el9.noarch lz4-libs-1.9.3-5.el9.x86_64 make-4.3-8.el9.x86_64 mpfr-4.1.0-7.el9.x86_64 ncurses-6.2-12.20210508.el9.x86_64 ncurses-base-6.2-12.20210508.el9.noarch ncurses-libs-6.2-12.20210508.el9.x86_64 ocaml-srpm-macros-6-6.el9.noarch openblas-srpm-macros-2-11.el9.noarch openldap-2.6.8-4.el9.x86_64 openssl-3.5.1-6.el9.x86_64 openssl-fips-provider-3.5.1-6.el9.x86_64 openssl-libs-3.5.1-6.el9.x86_64 p11-kit-0.25.10-1.el9.x86_64 p11-kit-trust-0.25.10-1.el9.x86_64 pam-1.5.1-28.el9.x86_64 patch-2.7.6-16.el9.x86_64 pcre-8.44-4.el9.x86_64 pcre2-10.40-6.el9.x86_64 pcre2-syntax-10.40-6.el9.noarch perl-AutoLoader-5.74-483.el9.noarch perl-B-1.80-483.el9.x86_64 perl-Carp-1.50-460.el9.noarch perl-Class-Struct-0.66-483.el9.noarch perl-Data-Dumper-2.174-462.el9.x86_64 perl-Digest-1.19-4.el9.noarch perl-Digest-MD5-2.58-4.el9.x86_64 perl-Encode-3.08-462.el9.x86_64 perl-Errno-1.30-483.el9.x86_64 perl-Exporter-5.74-461.el9.noarch perl-Fcntl-1.13-483.el9.x86_64 perl-File-Basename-2.85-483.el9.noarch perl-File-Path-2.18-4.el9.noarch perl-File-Temp-0.231.100-4.el9.noarch perl-File-stat-1.09-483.el9.noarch perl-FileHandle-2.03-483.el9.noarch perl-Getopt-Long-2.52-4.el9.noarch perl-Getopt-Std-1.12-483.el9.noarch perl-HTTP-Tiny-0.076-462.el9.noarch perl-IO-1.43-483.el9.x86_64 perl-IO-Socket-IP-0.41-5.el9.noarch perl-IO-Socket-SSL-2.073-2.el9.noarch perl-IPC-Open3-1.21-483.el9.noarch perl-MIME-Base64-3.16-4.el9.x86_64 perl-Mozilla-CA-20200520-6.el9.noarch perl-Net-SSLeay-1.94-3.el9.x86_64 perl-POSIX-1.94-483.el9.x86_64 perl-PathTools-3.78-461.el9.x86_64 perl-Pod-Escapes-1.07-460.el9.noarch perl-Pod-Perldoc-3.28.01-461.el9.noarch perl-Pod-Simple-3.42-4.el9.noarch perl-Pod-Usage-2.01-4.el9.noarch perl-Scalar-List-Utils-1.56-462.el9.x86_64 perl-SelectSaver-1.02-483.el9.noarch perl-Socket-2.031-4.el9.x86_64 perl-Storable-3.21-460.el9.x86_64 perl-Symbol-1.08-483.el9.noarch perl-Term-ANSIColor-5.01-461.el9.noarch perl-Term-Cap-1.17-460.el9.noarch perl-Text-ParseWords-3.30-460.el9.noarch perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch perl-Time-Local-1.300-7.el9.noarch perl-URI-5.09-3.el9.noarch perl-base-2.27-483.el9.noarch perl-constant-1.33-461.el9.noarch perl-if-0.60.800-483.el9.noarch perl-interpreter-5.32.1-483.el9.x86_64 perl-libnet-3.13-4.el9.noarch perl-libs-5.32.1-483.el9.x86_64 perl-mro-1.23-483.el9.x86_64 perl-overload-1.31-483.el9.noarch perl-overloading-0.02-483.el9.noarch perl-parent-0.238-460.el9.noarch perl-podlators-4.14-460.el9.noarch perl-srpm-macros-1-41.el9.noarch perl-subs-1.03-483.el9.noarch perl-vars-1.05-483.el9.noarch pkgconf-1.7.3-10.el9.x86_64 pkgconf-m4-1.7.3-10.el9.noarch pkgconf-pkg-config-1.7.3-10.el9.x86_64 popt-1.18-8.el9.x86_64 publicsuffix-list-dafsa-20210518-3.el9.noarch pyproject-srpm-macros-1.18.5-1.el9.noarch python-srpm-macros-3.9-54.el9.noarch qt5-srpm-macros-5.15.9-1.el9.noarch readline-8.1-4.el9.x86_64 redhat-rpm-config-210-1.el9.1.eel9.noarch rpm-4.16.1.3-40.el9.x86_64 rpm-build-4.16.1.3-40.el9.x86_64 rpm-build-libs-4.16.1.3-40.el9.x86_64 rpm-libs-4.16.1.3-40.el9.x86_64 rust-srpm-macros-17-4.el9.noarch sed-4.8-9.el9.x86_64 setup-2.13.7-10.el9.noarch shadow-utils-4.9-16.el9.x86_64 sqlite-libs-3.34.1-9.el9.x86_64 systemd-libs-252-64.el9.x86_64 tar-1.34-9.el9.x86_64 tzdata-2025c-1.el9.noarch unzip-6.0-59.el9.x86_64 util-linux-2.37.4-21.el9.x86_64 util-linux-core-2.37.4-21.el9.x86_64 which-2.21-30.el9.x86_64 xz-5.2.5-8.el9.x86_64 xz-libs-5.2.5-8.el9.x86_64 zip-3.0-35.el9.x86_64 zlib-1.2.11-41.el9.x86_64 zstd-1.5.5-1.el9.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1761868800 Wrote: /builddir/build/SRPMS/R-4.5.2-1.el9.1.eel9.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/centos-stream-9-x86_64-1767858965.000347/root/var/log/dnf.rpm.log /var/lib/mock/centos-stream-9-x86_64-1767858965.000347/root/var/log/dnf.librepo.log /var/lib/mock/centos-stream-9-x86_64-1767858965.000347/root/var/log/dnf.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-6zf78yc8/R/R.spec) Config(child) 0 minutes 41 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-4.5.2-1.el9.1.eel9.src.rpm) Config(centos-stream-9-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/centos-stream-9-x86_64-bootstrap-1767858965.000347/root. INFO: reusing tmpfs at /var/lib/mock/centos-stream-9-x86_64-bootstrap-1767858965.000347/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/centos-stream-9-x86_64-1767858965.000347/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.16.1.3-40.el9.x86_64 python3-dnf-4.14.0-31.el9.noarch python3-dnf-plugins-core-4.3.0-25.el9.noarch yum-4.14.0-31.el9.noarch Finish: chroot init Start: build phase for R-4.5.2-1.el9.1.eel9.src.rpm Start: build setup for R-4.5.2-1.el9.1.eel9.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1761868800 Wrote: /builddir/build/SRPMS/R-4.5.2-1.el9.1.eel9.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 104 kB/s | 1.5 kB 00:00 Copr repository 12 MB/s | 441 kB 00:00 Additional repo https_mirror_stream_centos_org_ 415 kB/s | 4.3 kB 00:00 Additional repo https_mirror_stream_centos_org_ 395 kB/s | 4.4 kB 00:00 Additional repo https_mirror_stream_centos_org_ 351 kB/s | 3.9 kB 00:00 Additional repo https_dl_fedoraproject_org_pub_ 89 kB/s | 4.0 kB 00:00 Additional repo https_dl_fedoraproject_org_pub_ 79 kB/s | 3.9 kB 00:00 Additional repo https_yum_oracle_com_repo_Oracl 80 kB/s | 3.8 kB 00:00 CentOS Stream 9 - BaseOS 162 kB/s | 9.6 kB 00:00 CentOS Stream 9 - AppStream 134 kB/s | 9.7 kB 00:00 CentOS Stream 9 - CRB 129 kB/s | 9.4 kB 00:00 CentOS Stream 9 - Extras packages 43 kB/s | 10 kB 00:00 Dependencies resolved. ================================================================================================================================================== Package Arch Version Repository Size ================================================================================================================================================== Installing: autoconf noarch 2.69-41.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 681 k automake noarch 1.16.2-8.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 689 k bzip2-devel x86_64 1.0.8-10.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 214 k cairo-devel x86_64 1.17.4-7.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 209 k flexiblas-devel x86_64 3.0.4-8.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 108 k gcc-c++ x86_64 11.5.0-14.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 13 M gcc-gfortran x86_64 11.5.0-14.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 13 M java-17-openjdk-devel x86_64 1:17.0.17.0.10-1.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 4.7 M less x86_64 590-6.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 162 k libICE-devel x86_64 1.0.10-8.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 47 k libSM-devel x86_64 1.2.3-10.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 13 k libX11-devel x86_64 1.8.12-1.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 1.1 M libXmu-devel x86_64 1.1.3-8.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 25 k libXt-devel x86_64 1.2.0-6.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 476 k libcurl-devel x86_64 7.76.1-38.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 974 k libdeflate-devel x86_64 1.25-1.el9 https_dl_fedoraproject_org_pub_epel_9_Everything_x86_64 15 k libicu-devel x86_64 67.1-10.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 937 k libjpeg-turbo-devel x86_64 2.0.90-7.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 99 k libpng-devel x86_64 2:1.6.37-12.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 293 k libtiff-devel x86_64 4.4.0-15.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 571 k libtirpc-devel x86_64 1.3.3-9.el9 https_mirror_stream_centos_org_9_stream_CRB_x86_64_os 127 k libtool x86_64 2.4.6-46.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 581 k libzstd-devel x86_64 1.5.5-1.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 51 k ncurses-devel x86_64 6.2-12.20210508.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 728 k pango-devel x86_64 1.48.7-3.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 149 k pcre2-devel x86_64 10.40-6.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 512 k readline-devel x86_64 8.1-4.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 202 k tcl-devel x86_64 1:8.6.10-7.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 169 k texinfo-tex x86_64 6.7-15.el9 https_mirror_stream_centos_org_9_stream_CRB_x86_64_os 139 k texlive-collection-latexrecommended noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 5.8 k texlive-upquote noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 169 k tk-devel x86_64 1:8.6.10-9.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 552 k tre-devel x86_64 0.8.0-34.20140228gitc2f5d13.el9 https_dl_fedoraproject_org_pub_epel_9_Everything_x86_64 12 k valgrind-devel x86_64 1:3.26.0-1.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 48 k xz-devel x86_64 5.2.5-8.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 55 k zlib-devel x86_64 1.2.11-41.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 45 k Installing dependencies: adobe-mappings-cmap noarch 20171205-12.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 1.9 M adobe-mappings-cmap-deprecated noarch 20171205-12.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 107 k adobe-mappings-pdf noarch 20180407-10.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 646 k alsa-lib x86_64 1.2.14-1.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 529 k annobin x86_64 12.98-1.el9.1.eel9 copr_base 1.1 M avahi-libs x86_64 0.8-23.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 67 k brotli x86_64 1.0.9-7.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 312 k brotli-devel x86_64 1.0.9-7.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 31 k cairo x86_64 1.17.4-7.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 660 k cmake-filesystem x86_64 3.31.8-3.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 19 k copy-jdk-configs noarch 4.0-3.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 28 k cpp x86_64 11.5.0-14.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 11 M crypto-policies-scripts noarch 20251126-1.gite9c4db2.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 101 k cups-libs x86_64 1:2.3.3op2-36.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 260 k dbus-libs x86_64 1:1.12.20-8.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 152 k dejavu-sans-fonts noarch 2.37-18.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 1.3 M emacs-filesystem noarch 1:27.2-18.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 9.2 k expat x86_64 2.5.0-6.el9 https_mirror_stream_centos_org_9_stream_BaseOS_x86_64_os 117 k flexiblas x86_64 3.0.4-8.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 33 k flexiblas-netlib x86_64 3.0.4-8.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 3.0 M flexiblas-netlib64 x86_64 3.0.4-8.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 2.9 M flexiblas-openblas-openmp x86_64 3.0.4-8.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 18 k flexiblas-openblas-openmp64 x86_64 3.0.4-8.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 18 k fontconfig x86_64 2.14.0-2.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 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https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 230 k texlive-ntgclass noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 1.7 M texlive-oberdiek noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 8.6 M texlive-palatino noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 434 k texlive-paralist noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 215 k texlive-parallel noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 127 k texlive-parskip noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 315 k texlive-pdfcolmk noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 11 k texlive-pdfescape noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 345 k texlive-pdflscape noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 300 k texlive-pdfpages noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 336 k texlive-pdftex x86_64 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 2.0 M texlive-pdftexcmds noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 383 k texlive-pgf noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 11 M texlive-placeins noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 261 k texlive-plain noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 93 k texlive-polyglossia noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 838 k texlive-psfrag noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 82 k texlive-pslatex noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 17 k texlive-psnfss noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 315 k texlive-pspicture noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 53 k texlive-pst-3d noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 112 k texlive-pst-arrow noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 140 k texlive-pst-coil noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 261 k texlive-pst-eps noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 91 k texlive-pst-fill noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 1.1 M texlive-pst-grad noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 225 k texlive-pst-math noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 189 k texlive-pst-node noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 448 k texlive-pst-plot noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 1.1 M texlive-pst-text noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 181 k texlive-pst-tools noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 113 k texlive-pst-tree noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 166 k texlive-pstricks noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 7.2 M texlive-pstricks-add noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 4.6 M texlive-pxfonts noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 937 k texlive-qstest noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 228 k texlive-ragged2e noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 656 k texlive-rcs noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 141 k texlive-realscripts noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 113 k texlive-refcount noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 327 k texlive-rerunfilecheck noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 316 k texlive-rsfs noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 72 k texlive-sansmath noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 189 k texlive-sansmathaccent noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 179 k texlive-sauerj noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 546 k texlive-section noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 363 k texlive-seminar noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 383 k texlive-sepnum noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 355 k texlive-setspace noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 17 k texlive-showexpl noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 599 k texlive-soul noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 316 k texlive-stringenc noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 693 k texlive-subfig noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 463 k texlive-symbol noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 49 k texlive-tex x86_64 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 210 k texlive-tex-gyre noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 14 M texlive-tex-gyre-math noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 1.8 M texlive-tex-ini-files noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 14 k texlive-texlive-common-doc noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 444 k texlive-texlive-docindex noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 182 k texlive-texlive-en noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 1.9 M texlive-texlive-msg-translations noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 150 k texlive-texlive-scripts noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 114 k texlive-texlive-scripts-extra noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 61 k texlive-texlive.infra noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 284 k texlive-textcase noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 198 k texlive-thumbpdf noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 38 k texlive-times noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 374 k texlive-tipa noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 5.0 M texlive-titlesec noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 666 k texlive-tools noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 5.0 M texlive-translator noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 280 k texlive-txfonts noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 1.4 M texlive-typehtml noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 167 k texlive-ucharcat noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 165 k texlive-ucs noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 1.3 M texlive-underscore noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 251 k texlive-unicode-data noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 352 k texlive-unicode-math noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 1.7 M texlive-uniquecounter noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 293 k texlive-updmap-map noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 330 k texlive-url noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 273 k texlive-utopia noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 241 k texlive-varwidth noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 39 k texlive-wasy noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 336 k texlive-wasy-type1 noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 266 k texlive-wasysym noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 171 k texlive-xcolor noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 683 k texlive-xdvi x86_64 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 356 k texlive-xetex x86_64 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 2.2 M texlive-xetexconfig noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 9.2 k texlive-xifthen noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 479 k texlive-xkeyval noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 405 k texlive-xltxtra noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 110 k texlive-xunicode noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 37 k texlive-zapfchan noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 102 k texlive-zapfding noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 58 k texlive-zref noarch 9:20200406-26.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 660 k tk x86_64 1:8.6.10-9.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 1.6 M tre x86_64 0.8.0-34.20140228gitc2f5d13.el9 https_dl_fedoraproject_org_pub_epel_9_Everything_x86_64 42 k tre-common noarch 0.8.0-34.20140228gitc2f5d13.el9 https_dl_fedoraproject_org_pub_epel_9_Everything_x86_64 31 k ttmkfdir x86_64 3.0.9-65.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 53 k tzdata-java noarch 2025c-1.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 223 k urw-base35-bookman-fonts noarch 20200910-6.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 847 k urw-base35-c059-fonts noarch 20200910-6.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 875 k urw-base35-d050000l-fonts noarch 20200910-6.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 77 k urw-base35-fonts noarch 20200910-6.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 11 k urw-base35-fonts-common noarch 20200910-6.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 22 k urw-base35-gothic-fonts noarch 20200910-6.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 643 k urw-base35-nimbus-mono-ps-fonts noarch 20200910-6.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 796 k urw-base35-nimbus-roman-fonts noarch 20200910-6.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 856 k urw-base35-nimbus-sans-fonts noarch 20200910-6.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 1.3 M urw-base35-p052-fonts noarch 20200910-6.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 974 k urw-base35-standard-symbols-ps-fonts noarch 20200910-6.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 42 k urw-base35-z003-fonts noarch 20200910-6.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 276 k xml-common noarch 0.6.3-58.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 32 k xorg-x11-fonts-Type1 noarch 7.5-33.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 505 k xorg-x11-proto-devel noarch 2024.1-1.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 310 k zziplib x86_64 0.13.71-12.el9 https_mirror_stream_centos_org_9_stream_AppStream_x86_64_os 88 k Transaction Summary ================================================================================================================================================== Install 481 Packages Total download size: 585 M Installed size: 1.5 G Downloading Packages: (1/481): annobin-12.98-1.el9.1.eel9.x86_64.rpm 31 MB/s | 1.1 MB 00:00 (2/481): texinfo-6.7-15.el9.x86_64.rpm 40 MB/s | 988 kB 00:00 (3/481): libtirpc-devel-1.3.3-9.el9.x86_64.rpm 2.0 MB/s | 127 kB 00:00 (4/481): perl-Unicode-EastAsianWidth-12.0-7.el9 318 kB/s | 20 kB 00:00 (5/481): adobe-mappings-cmap-deprecated-2017120 2.7 MB/s | 107 kB 00:00 (6/481): adobe-mappings-cmap-20171205-12.el9.no 33 MB/s | 1.9 MB 00:00 (7/481): adobe-mappings-pdf-20180407-10.el9.noa 30 MB/s | 646 kB 00:00 (8/481): autoconf-2.69-41.el9.noarch.rpm 168 MB/s | 681 kB 00:00 (9/481): alsa-lib-1.2.14-1.el9.x86_64.rpm 26 MB/s | 529 kB 00:00 (10/481): brotli-1.0.9-7.el9.x86_64.rpm 131 MB/s | 312 kB 00:00 (11/481): brotli-devel-1.0.9-7.el9.x86_64.rpm 17 MB/s | 31 kB 00:00 (12/481): texinfo-tex-6.7-15.el9.x86_64.rpm 1.6 MB/s | 139 kB 00:00 (13/481): bzip2-devel-1.0.8-10.el9.x86_64.rpm 83 MB/s | 214 kB 00:00 (14/481): automake-1.16.2-8.el9.noarch.rpm 33 MB/s | 689 kB 00:00 (15/481): cmake-filesystem-3.31.8-3.el9.x86_64. 8.2 MB/s | 19 kB 00:00 (16/481): cairo-1.17.4-7.el9.x86_64.rpm 103 MB/s | 660 kB 00:00 (17/481): copy-jdk-configs-4.0-3.el9.noarch.rpm 1.3 MB/s | 28 kB 00:00 (18/481): emacs-filesystem-27.2-18.el9.noarch.r 2.4 MB/s | 9.2 kB 00:00 (19/481): cpp-11.5.0-14.el9.x86_64.rpm 292 MB/s | 11 MB 00:00 (20/481): flexiblas-3.0.4-8.el9.x86_64.rpm 1.6 MB/s | 33 kB 00:00 (21/481): flexiblas-devel-3.0.4-8.el9.x86_64.rp 2.5 MB/s | 108 kB 00:00 (22/481): flexiblas-netlib64-3.0.4-8.el9.x86_64 92 MB/s | 2.9 MB 00:00 (23/481): cairo-devel-1.17.4-7.el9.x86_64.rpm 1.4 MB/s | 209 kB 00:00 (24/481): flexiblas-openblas-openmp-3.0.4-8.el9 431 kB/s | 18 kB 00:00 (25/481): fontconfig-2.14.0-2.el9.x86_64.rpm 114 MB/s | 297 kB 00:00 (26/481): fontconfig-devel-2.14.0-2.el9.x86_64. 75 MB/s | 174 kB 00:00 (27/481): flexiblas-netlib-3.0.4-8.el9.x86_64.r 25 MB/s | 3.0 MB 00:00 (28/481): freetype-devel-2.10.4-11.el9.x86_64.r 126 MB/s | 1.1 MB 00:00 (29/481): flexiblas-openblas-openmp64-3.0.4-8.e 632 kB/s | 18 kB 00:00 (30/481): fribidi-1.0.10-6.el9.2.x86_64.rpm 4.0 MB/s | 85 kB 00:00 (31/481): fribidi-devel-1.0.10-6.el9.2.x86_64.r 829 kB/s | 27 kB 00:00 (32/481): gcc-c++-11.5.0-14.el9.x86_64.rpm 270 MB/s | 13 MB 00:00 (33/481): gcc-plugin-annobin-11.5.0-14.el9.x86_ 6.4 MB/s | 37 kB 00:00 (34/481): ghostscript-9.54.0-19.el9.x86_64.rpm 2.2 MB/s | 43 kB 00:00 (35/481): ghostscript-tools-fonts-9.54.0-19.el9 621 kB/s | 13 kB 00:00 (36/481): ghostscript-tools-printing-9.54.0-19. 658 kB/s | 13 kB 00:00 (37/481): glib2-devel-2.68.4-18.el9.x86_64.rpm 158 MB/s | 550 kB 00:00 (38/481): glibc-devel-2.34-245.el9.x86_64.rpm 11 MB/s | 37 kB 00:00 (39/481): glibc-headers-2.34-245.el9.x86_64.rpm 82 MB/s | 546 kB 00:00 (40/481): gcc-gfortran-11.5.0-14.el9.x86_64.rpm 97 MB/s | 13 MB 00:00 (41/481): graphite2-devel-1.3.14-9.el9.x86_64.r 6.8 MB/s | 22 kB 00:00 (42/481): harfbuzz-devel-2.7.4-10.el9.x86_64.rp 85 MB/s | 347 kB 00:00 (43/481): google-droid-sans-fonts-20200215-11.e 88 MB/s | 2.7 MB 00:00 (44/481): harfbuzz-icu-2.7.4-10.el9.x86_64.rpm 4.3 MB/s | 14 kB 00:00 (45/481): java-17-openjdk-17.0.17.0.10-1.el9.x8 19 MB/s | 428 kB 00:00 (46/481): gcc-11.5.0-14.el9.x86_64.rpm 122 MB/s | 32 MB 00:00 (47/481): java-17-openjdk-devel-17.0.17.0.10-1. 47 MB/s | 4.7 MB 00:00 (48/481): javapackages-filesystem-6.4.0-1.el9.n 786 kB/s | 13 kB 00:00 (49/481): jbig2dec-libs-0.19-7.el9.x86_64.rpm 3.7 MB/s | 73 kB 00:00 (50/481): 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Running transaction test Transaction test succeeded. Running transaction Running scriptlet: texlive-base-9:20200406-26.el9.noarch 1/1 Running scriptlet: copy-jdk-configs-4.0-3.el9.noarch 1/1 Running scriptlet: java-17-openjdk-headless-1:17.0.17.0.10-1.el9.x86_64 1/1 Preparing : 1/1 Running scriptlet: texlive-base-9:20200406-26.el9.noarch 1/481 Installing : texlive-base-9:20200406-26.el9.noarch 1/481 Installing : texlive-lib-9:20200406-26.el9.x86_64 2/481 Installing : libpng-2:1.6.37-12.el9.x86_64 3/481 Installing : xorg-x11-proto-devel-2024.1-1.el9.noarch 4/481 Installing : nspr-4.36.0-4.el9.x86_64 5/481 Installing : libquadmath-11.5.0-14.el9.x86_64 6/481 Installing : libgfortran-11.5.0-14.el9.x86_64 7/481 Installing : zlib-devel-1.2.11-41.el9.x86_64 8/481 Installing : flexiblas-3.0.4-8.el9.x86_64 9/481 Installing : nss-util-3.112.0-4.el9.x86_64 10/481 Installing : fonts-filesystem-1:2.0.5-7.el9.1.noarch 11/481 Installing : urw-base35-fonts-common-20200910-6.el9.noarch 12/481 Installing : perl-File-Copy-2.34-483.el9.noarch 13/481 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texlive-bookmark-9:20200406-26.el9.noarch 186/481 Verifying : texlive-booktabs-9:20200406-26.el9.noarch 187/481 Verifying : texlive-breakurl-9:20200406-26.el9.noarch 188/481 Verifying : texlive-breqn-9:20200406-26.el9.noarch 189/481 Verifying : texlive-caption-9:20200406-26.el9.noarch 190/481 Verifying : texlive-carlisle-9:20200406-26.el9.noarch 191/481 Verifying : texlive-catchfile-9:20200406-26.el9.noarch 192/481 Verifying : texlive-changepage-9:20200406-26.el9.noarch 193/481 Verifying : texlive-charter-9:20200406-26.el9.noarch 194/481 Verifying : texlive-chngcntr-9:20200406-26.el9.noarch 195/481 Verifying : texlive-cite-9:20200406-26.el9.noarch 196/481 Verifying : texlive-cm-9:20200406-26.el9.noarch 197/481 Verifying : texlive-cm-super-9:20200406-26.el9.noarch 198/481 Verifying : texlive-cmap-9:20200406-26.el9.noarch 199/481 Verifying : texlive-cmextra-9:20200406-26.el9.noarch 200/481 Verifying : texlive-collection-basic-9:20200406-26.el9.noarc 201/481 Verifying : texlive-collection-fontsrecommended-9:20200406-2 202/481 Verifying : texlive-collection-latex-9:20200406-26.el9.noarc 203/481 Verifying : texlive-collection-latexrecommended-9:20200406-2 204/481 Verifying : texlive-colorprofiles-9:20200406-26.el9.noarch 205/481 Verifying : texlive-colortbl-9:20200406-26.el9.noarch 206/481 Verifying : texlive-courier-9:20200406-26.el9.noarch 207/481 Verifying : texlive-crop-9:20200406-26.el9.noarch 208/481 Verifying : texlive-csquotes-9:20200406-26.el9.noarch 209/481 Verifying : texlive-ctable-9:20200406-26.el9.noarch 210/481 Verifying : texlive-currfile-9:20200406-26.el9.noarch 211/481 Verifying : texlive-dvipdfmx-9:20200406-26.el9.x86_64 212/481 Verifying : texlive-dvips-9:20200406-26.el9.x86_64 213/481 Verifying : texlive-ec-9:20200406-26.el9.noarch 214/481 Verifying : texlive-enctex-9:20200406-26.el9.noarch 215/481 Verifying : texlive-enumitem-9:20200406-26.el9.noarch 216/481 Verifying : texlive-epsf-9:20200406-26.el9.noarch 217/481 Verifying : texlive-epstopdf-pkg-9:20200406-26.el9.noarch 218/481 Verifying : texlive-eso-pic-9:20200406-26.el9.noarch 219/481 Verifying : texlive-etex-9:20200406-26.el9.noarch 220/481 Verifying : texlive-etex-pkg-9:20200406-26.el9.noarch 221/481 Verifying : texlive-etexcmds-9:20200406-26.el9.noarch 222/481 Verifying : texlive-etoolbox-9:20200406-26.el9.noarch 223/481 Verifying : texlive-euenc-9:20200406-26.el9.noarch 224/481 Verifying : texlive-euler-9:20200406-26.el9.noarch 225/481 Verifying : texlive-euro-9:20200406-26.el9.noarch 226/481 Verifying : texlive-eurosym-9:20200406-26.el9.noarch 227/481 Verifying : texlive-extsizes-9:20200406-26.el9.noarch 228/481 Verifying : texlive-fancybox-9:20200406-26.el9.noarch 229/481 Verifying : texlive-fancyhdr-9:20200406-26.el9.noarch 230/481 Verifying : texlive-fancyref-9:20200406-26.el9.noarch 231/481 Verifying : texlive-fancyvrb-9:20200406-26.el9.noarch 232/481 Verifying : texlive-filecontents-9:20200406-26.el9.noarch 233/481 Verifying : texlive-filehook-9:20200406-26.el9.noarch 234/481 Verifying : texlive-finstrut-9:20200406-26.el9.noarch 235/481 Verifying : texlive-fix2col-9:20200406-26.el9.noarch 236/481 Verifying : texlive-float-9:20200406-26.el9.noarch 237/481 Verifying : texlive-fontspec-9:20200406-26.el9.noarch 238/481 Verifying : texlive-footmisc-9:20200406-26.el9.noarch 239/481 Verifying : texlive-footnotehyper-9:20200406-26.el9.noarch 240/481 Verifying : texlive-fp-9:20200406-26.el9.noarch 241/481 Verifying : texlive-fpl-9:20200406-26.el9.noarch 242/481 Verifying : texlive-geometry-9:20200406-26.el9.noarch 243/481 Verifying : texlive-gettitlestring-9:20200406-26.el9.noarch 244/481 Verifying : texlive-glyphlist-9:20200406-26.el9.noarch 245/481 Verifying : texlive-graphics-9:20200406-26.el9.noarch 246/481 Verifying : texlive-graphics-cfg-9:20200406-26.el9.noarch 247/481 Verifying : texlive-graphics-def-9:20200406-26.el9.noarch 248/481 Verifying : texlive-grfext-9:20200406-26.el9.noarch 249/481 Verifying : texlive-grffile-9:20200406-26.el9.noarch 250/481 Verifying : texlive-helvetic-9:20200406-26.el9.noarch 251/481 Verifying : texlive-hobsub-9:20200406-26.el9.noarch 252/481 Verifying : texlive-hologo-9:20200406-26.el9.noarch 253/481 Verifying : texlive-hycolor-9:20200406-26.el9.noarch 254/481 Verifying : texlive-hyperref-9:20200406-26.el9.noarch 255/481 Verifying : texlive-hyph-utf8-9:20200406-26.el9.noarch 256/481 Verifying : texlive-hyphen-base-9:20200406-26.el9.noarch 257/481 Verifying : texlive-hyphenex-9:20200406-26.el9.noarch 258/481 Verifying : texlive-ifmtarg-9:20200406-26.el9.noarch 259/481 Verifying : texlive-ifplatform-9:20200406-26.el9.noarch 260/481 Verifying : texlive-iftex-9:20200406-26.el9.noarch 261/481 Verifying : texlive-index-9:20200406-26.el9.noarch 262/481 Verifying : texlive-infwarerr-9:20200406-26.el9.noarch 263/481 Verifying : texlive-intcalc-9:20200406-26.el9.noarch 264/481 Verifying : texlive-jknapltx-9:20200406-26.el9.noarch 265/481 Verifying : texlive-kastrup-9:20200406-26.el9.noarch 266/481 Verifying : texlive-knuth-lib-9:20200406-26.el9.noarch 267/481 Verifying : texlive-knuth-local-9:20200406-26.el9.noarch 268/481 Verifying : texlive-koma-script-9:20200406-26.el9.noarch 269/481 Verifying : texlive-kpathsea-9:20200406-26.el9.x86_64 270/481 Verifying : texlive-kvdefinekeys-9:20200406-26.el9.noarch 271/481 Verifying : texlive-kvoptions-9:20200406-26.el9.noarch 272/481 Verifying : texlive-kvsetkeys-9:20200406-26.el9.noarch 273/481 Verifying : texlive-l3backend-9:20200406-26.el9.noarch 274/481 Verifying : texlive-l3experimental-9:20200406-26.el9.noarch 275/481 Verifying : texlive-l3kernel-9:20200406-26.el9.noarch 276/481 Verifying : texlive-l3packages-9:20200406-26.el9.noarch 277/481 Verifying : texlive-latex-9:20200406-26.el9.noarch 278/481 Verifying : texlive-latex-fonts-9:20200406-26.el9.noarch 279/481 Verifying : texlive-latexbug-9:20200406-26.el9.noarch 280/481 Verifying : texlive-latexconfig-9:20200406-26.el9.noarch 281/481 Verifying : texlive-letltxmacro-9:20200406-26.el9.noarch 282/481 Verifying : texlive-lib-9:20200406-26.el9.x86_64 283/481 Verifying : texlive-lineno-9:20200406-26.el9.noarch 284/481 Verifying : texlive-listings-9:20200406-26.el9.noarch 285/481 Verifying : texlive-lm-9:20200406-26.el9.noarch 286/481 Verifying : texlive-lm-math-9:20200406-26.el9.noarch 287/481 Verifying : texlive-ltabptch-9:20200406-26.el9.noarch 288/481 Verifying : texlive-ltxcmds-9:20200406-26.el9.noarch 289/481 Verifying : texlive-ltxmisc-9:20200406-26.el9.noarch 290/481 Verifying : texlive-lua-alt-getopt-9:20200406-26.el9.noarch 291/481 Verifying : texlive-luahbtex-9:20200406-26.el9.x86_64 292/481 Verifying : texlive-lualatex-math-9:20200406-26.el9.noarch 293/481 Verifying : texlive-lualibs-9:20200406-26.el9.noarch 294/481 Verifying : texlive-luaotfload-9:20200406-26.el9.noarch 295/481 Verifying : texlive-luatex-9:20200406-26.el9.x86_64 296/481 Verifying : texlive-luatexbase-9:20200406-26.el9.noarch 297/481 Verifying : texlive-lwarp-9:20200406-26.el9.noarch 298/481 Verifying : texlive-makecmds-9:20200406-26.el9.noarch 299/481 Verifying : texlive-makeindex-9:20200406-26.el9.x86_64 300/481 Verifying : texlive-manfnt-font-9:20200406-26.el9.noarch 301/481 Verifying : texlive-marginnote-9:20200406-26.el9.noarch 302/481 Verifying : texlive-marvosym-9:20200406-26.el9.noarch 303/481 Verifying : texlive-mathpazo-9:20200406-26.el9.noarch 304/481 Verifying : texlive-mathspec-9:20200406-26.el9.noarch 305/481 Verifying : texlive-mathtools-9:20200406-26.el9.noarch 306/481 Verifying : texlive-mdwtools-9:20200406-26.el9.noarch 307/481 Verifying : texlive-memoir-9:20200406-26.el9.noarch 308/481 Verifying : texlive-metafont-9:20200406-26.el9.x86_64 309/481 Verifying : texlive-metalogo-9:20200406-26.el9.noarch 310/481 Verifying : texlive-mflogo-9:20200406-26.el9.noarch 311/481 Verifying : texlive-mflogo-font-9:20200406-26.el9.noarch 312/481 Verifying : texlive-mfnfss-9:20200406-26.el9.noarch 313/481 Verifying : texlive-mfware-9:20200406-26.el9.x86_64 314/481 Verifying : texlive-microtype-9:20200406-26.el9.noarch 315/481 Verifying : texlive-minitoc-9:20200406-26.el9.noarch 316/481 Verifying : texlive-mnsymbol-9:20200406-26.el9.noarch 317/481 Verifying : texlive-modes-9:20200406-26.el9.noarch 318/481 Verifying : texlive-mparhack-9:20200406-26.el9.noarch 319/481 Verifying : texlive-mptopdf-9:20200406-26.el9.noarch 320/481 Verifying : texlive-ms-9:20200406-26.el9.noarch 321/481 Verifying : texlive-multido-9:20200406-26.el9.noarch 322/481 Verifying : texlive-natbib-9:20200406-26.el9.noarch 323/481 Verifying : texlive-ncntrsbk-9:20200406-26.el9.noarch 324/481 Verifying : texlive-newfloat-9:20200406-26.el9.noarch 325/481 Verifying : texlive-notoccite-9:20200406-26.el9.noarch 326/481 Verifying : texlive-ntgclass-9:20200406-26.el9.noarch 327/481 Verifying : texlive-oberdiek-9:20200406-26.el9.noarch 328/481 Verifying : texlive-palatino-9:20200406-26.el9.noarch 329/481 Verifying : texlive-paralist-9:20200406-26.el9.noarch 330/481 Verifying : texlive-parallel-9:20200406-26.el9.noarch 331/481 Verifying : texlive-parskip-9:20200406-26.el9.noarch 332/481 Verifying : texlive-pdfcolmk-9:20200406-26.el9.noarch 333/481 Verifying : texlive-pdfescape-9:20200406-26.el9.noarch 334/481 Verifying : texlive-pdflscape-9:20200406-26.el9.noarch 335/481 Verifying : texlive-pdfpages-9:20200406-26.el9.noarch 336/481 Verifying : texlive-pdftex-9:20200406-26.el9.x86_64 337/481 Verifying : texlive-pdftexcmds-9:20200406-26.el9.noarch 338/481 Verifying : texlive-pgf-9:20200406-26.el9.noarch 339/481 Verifying : texlive-placeins-9:20200406-26.el9.noarch 340/481 Verifying : texlive-plain-9:20200406-26.el9.noarch 341/481 Verifying : texlive-polyglossia-9:20200406-26.el9.noarch 342/481 Verifying : texlive-psfrag-9:20200406-26.el9.noarch 343/481 Verifying : texlive-pslatex-9:20200406-26.el9.noarch 344/481 Verifying : texlive-psnfss-9:20200406-26.el9.noarch 345/481 Verifying : texlive-pspicture-9:20200406-26.el9.noarch 346/481 Verifying : texlive-pst-3d-9:20200406-26.el9.noarch 347/481 Verifying : texlive-pst-arrow-9:20200406-26.el9.noarch 348/481 Verifying : texlive-pst-coil-9:20200406-26.el9.noarch 349/481 Verifying : texlive-pst-eps-9:20200406-26.el9.noarch 350/481 Verifying : texlive-pst-fill-9:20200406-26.el9.noarch 351/481 Verifying : texlive-pst-grad-9:20200406-26.el9.noarch 352/481 Verifying : texlive-pst-math-9:20200406-26.el9.noarch 353/481 Verifying : texlive-pst-node-9:20200406-26.el9.noarch 354/481 Verifying : texlive-pst-plot-9:20200406-26.el9.noarch 355/481 Verifying : texlive-pst-text-9:20200406-26.el9.noarch 356/481 Verifying : texlive-pst-tools-9:20200406-26.el9.noarch 357/481 Verifying : texlive-pst-tree-9:20200406-26.el9.noarch 358/481 Verifying : texlive-pstricks-9:20200406-26.el9.noarch 359/481 Verifying : texlive-pstricks-add-9:20200406-26.el9.noarch 360/481 Verifying : texlive-pxfonts-9:20200406-26.el9.noarch 361/481 Verifying : texlive-qstest-9:20200406-26.el9.noarch 362/481 Verifying : texlive-ragged2e-9:20200406-26.el9.noarch 363/481 Verifying : texlive-rcs-9:20200406-26.el9.noarch 364/481 Verifying : texlive-realscripts-9:20200406-26.el9.noarch 365/481 Verifying : texlive-refcount-9:20200406-26.el9.noarch 366/481 Verifying : texlive-rerunfilecheck-9:20200406-26.el9.noarch 367/481 Verifying : texlive-rsfs-9:20200406-26.el9.noarch 368/481 Verifying : texlive-sansmath-9:20200406-26.el9.noarch 369/481 Verifying : texlive-sansmathaccent-9:20200406-26.el9.noarch 370/481 Verifying : texlive-sauerj-9:20200406-26.el9.noarch 371/481 Verifying : texlive-section-9:20200406-26.el9.noarch 372/481 Verifying : texlive-seminar-9:20200406-26.el9.noarch 373/481 Verifying : texlive-sepnum-9:20200406-26.el9.noarch 374/481 Verifying : texlive-setspace-9:20200406-26.el9.noarch 375/481 Verifying : texlive-showexpl-9:20200406-26.el9.noarch 376/481 Verifying : texlive-soul-9:20200406-26.el9.noarch 377/481 Verifying : texlive-stringenc-9:20200406-26.el9.noarch 378/481 Verifying : texlive-subfig-9:20200406-26.el9.noarch 379/481 Verifying : texlive-symbol-9:20200406-26.el9.noarch 380/481 Verifying : texlive-tex-9:20200406-26.el9.x86_64 381/481 Verifying : texlive-tex-gyre-9:20200406-26.el9.noarch 382/481 Verifying : texlive-tex-gyre-math-9:20200406-26.el9.noarch 383/481 Verifying : texlive-tex-ini-files-9:20200406-26.el9.noarch 384/481 Verifying : texlive-texlive-common-doc-9:20200406-26.el9.noa 385/481 Verifying : texlive-texlive-docindex-9:20200406-26.el9.noarc 386/481 Verifying : texlive-texlive-en-9:20200406-26.el9.noarch 387/481 Verifying : texlive-texlive-msg-translations-9:20200406-26.e 388/481 Verifying : texlive-texlive-scripts-9:20200406-26.el9.noarch 389/481 Verifying : texlive-texlive-scripts-extra-9:20200406-26.el9. 390/481 Verifying : texlive-texlive.infra-9:20200406-26.el9.noarch 391/481 Verifying : texlive-textcase-9:20200406-26.el9.noarch 392/481 Verifying : texlive-thumbpdf-9:20200406-26.el9.noarch 393/481 Verifying : texlive-times-9:20200406-26.el9.noarch 394/481 Verifying : texlive-tipa-9:20200406-26.el9.noarch 395/481 Verifying : texlive-titlesec-9:20200406-26.el9.noarch 396/481 Verifying : texlive-tools-9:20200406-26.el9.noarch 397/481 Verifying : texlive-translator-9:20200406-26.el9.noarch 398/481 Verifying : texlive-txfonts-9:20200406-26.el9.noarch 399/481 Verifying : texlive-typehtml-9:20200406-26.el9.noarch 400/481 Verifying : texlive-ucharcat-9:20200406-26.el9.noarch 401/481 Verifying : texlive-ucs-9:20200406-26.el9.noarch 402/481 Verifying : texlive-underscore-9:20200406-26.el9.noarch 403/481 Verifying : texlive-unicode-data-9:20200406-26.el9.noarch 404/481 Verifying : texlive-unicode-math-9:20200406-26.el9.noarch 405/481 Verifying : texlive-uniquecounter-9:20200406-26.el9.noarch 406/481 Verifying : texlive-updmap-map-9:20200406-26.el9.noarch 407/481 Verifying : texlive-upquote-9:20200406-26.el9.noarch 408/481 Verifying : texlive-url-9:20200406-26.el9.noarch 409/481 Verifying : texlive-utopia-9:20200406-26.el9.noarch 410/481 Verifying : texlive-varwidth-9:20200406-26.el9.noarch 411/481 Verifying : texlive-wasy-9:20200406-26.el9.noarch 412/481 Verifying : texlive-wasy-type1-9:20200406-26.el9.noarch 413/481 Verifying : texlive-wasysym-9:20200406-26.el9.noarch 414/481 Verifying : texlive-xcolor-9:20200406-26.el9.noarch 415/481 Verifying : texlive-xdvi-9:20200406-26.el9.x86_64 416/481 Verifying : texlive-xetex-9:20200406-26.el9.x86_64 417/481 Verifying : texlive-xetexconfig-9:20200406-26.el9.noarch 418/481 Verifying : texlive-xifthen-9:20200406-26.el9.noarch 419/481 Verifying : texlive-xkeyval-9:20200406-26.el9.noarch 420/481 Verifying : texlive-xltxtra-9:20200406-26.el9.noarch 421/481 Verifying : texlive-xunicode-9:20200406-26.el9.noarch 422/481 Verifying : texlive-zapfchan-9:20200406-26.el9.noarch 423/481 Verifying : texlive-zapfding-9:20200406-26.el9.noarch 424/481 Verifying : texlive-zref-9:20200406-26.el9.noarch 425/481 Verifying : tk-1:8.6.10-9.el9.x86_64 426/481 Verifying : tk-devel-1:8.6.10-9.el9.x86_64 427/481 Verifying : ttmkfdir-3.0.9-65.el9.x86_64 428/481 Verifying : tzdata-java-2025c-1.el9.noarch 429/481 Verifying : urw-base35-bookman-fonts-20200910-6.el9.noarch 430/481 Verifying : urw-base35-c059-fonts-20200910-6.el9.noarch 431/481 Verifying : urw-base35-d050000l-fonts-20200910-6.el9.noarch 432/481 Verifying : urw-base35-fonts-20200910-6.el9.noarch 433/481 Verifying : urw-base35-fonts-common-20200910-6.el9.noarch 434/481 Verifying : urw-base35-gothic-fonts-20200910-6.el9.noarch 435/481 Verifying : urw-base35-nimbus-mono-ps-fonts-20200910-6.el9.n 436/481 Verifying : urw-base35-nimbus-roman-fonts-20200910-6.el9.noa 437/481 Verifying : urw-base35-nimbus-sans-fonts-20200910-6.el9.noar 438/481 Verifying : urw-base35-p052-fonts-20200910-6.el9.noarch 439/481 Verifying : urw-base35-standard-symbols-ps-fonts-20200910-6. 440/481 Verifying : urw-base35-z003-fonts-20200910-6.el9.noarch 441/481 Verifying : valgrind-devel-1:3.26.0-1.el9.x86_64 442/481 Verifying : xml-common-0.6.3-58.el9.noarch 443/481 Verifying : xorg-x11-fonts-Type1-7.5-33.el9.noarch 444/481 Verifying : xorg-x11-proto-devel-2024.1-1.el9.noarch 445/481 Verifying : xz-devel-5.2.5-8.el9.x86_64 446/481 Verifying : zlib-devel-1.2.11-41.el9.x86_64 447/481 Verifying : zziplib-0.13.71-12.el9.x86_64 448/481 Verifying : avahi-libs-0.8-23.el9.x86_64 449/481 Verifying : crypto-policies-scripts-20251126-1.gite9c4db2.el 450/481 Verifying : cups-libs-1:2.3.3op2-36.el9.x86_64 451/481 Verifying : dbus-libs-1:1.12.20-8.el9.x86_64 452/481 Verifying : dejavu-sans-fonts-2.37-18.el9.noarch 453/481 Verifying : expat-2.5.0-6.el9.x86_64 454/481 Verifying : fonts-filesystem-1:2.0.5-7.el9.1.noarch 455/481 Verifying : freetype-2.10.4-11.el9.x86_64 456/481 Verifying : gettext-0.21-8.el9.x86_64 457/481 Verifying : gettext-libs-0.21-8.el9.x86_64 458/481 Verifying : glib2-2.68.4-18.el9.x86_64 459/481 Verifying : gnutls-3.8.10-1.el9.x86_64 460/481 Verifying : graphite2-1.3.14-9.el9.x86_64 461/481 Verifying : harfbuzz-2.7.4-10.el9.x86_64 462/481 Verifying : less-590-6.el9.x86_64 463/481 Verifying : libedit-3.1-38.20210216cvs.el9.x86_64 464/481 Verifying : libgfortran-11.5.0-14.el9.x86_64 465/481 Verifying : libicu-67.1-10.el9.x86_64 466/481 Verifying : libpng-2:1.6.37-12.el9.x86_64 467/481 Verifying : libquadmath-11.5.0-14.el9.x86_64 468/481 Verifying : libtirpc-1.3.3-9.el9.x86_64 469/481 Verifying : lksctp-tools-1.0.19-2.el9.x86_64 470/481 Verifying : nettle-3.10.1-1.el9.x86_64 471/481 Verifying : python3-3.9.25-2.el9.x86_64 472/481 Verifying : python3-libs-3.9.25-2.el9.x86_64 473/481 Verifying : python3-pip-wheel-21.3.1-1.el9.noarch 474/481 Verifying : python3-setuptools-wheel-53.0.0-15.el9.noarch 475/481 Verifying : tcl-1:8.6.10-7.el9.x86_64 476/481 Verifying : libdeflate-1.25-1.el9.x86_64 477/481 Verifying : libdeflate-devel-1.25-1.el9.x86_64 478/481 Verifying : tre-0.8.0-34.20140228gitc2f5d13.el9.x86_64 479/481 Verifying : tre-common-0.8.0-34.20140228gitc2f5d13.el9.noarc 480/481 Verifying : tre-devel-0.8.0-34.20140228gitc2f5d13.el9.x86_64 481/481 Installed: adobe-mappings-cmap-20171205-12.el9.noarch adobe-mappings-cmap-deprecated-20171205-12.el9.noarch adobe-mappings-pdf-20180407-10.el9.noarch alsa-lib-1.2.14-1.el9.x86_64 annobin-12.98-1.el9.1.eel9.x86_64 autoconf-2.69-41.el9.noarch automake-1.16.2-8.el9.noarch avahi-libs-0.8-23.el9.x86_64 brotli-1.0.9-7.el9.x86_64 brotli-devel-1.0.9-7.el9.x86_64 bzip2-devel-1.0.8-10.el9.x86_64 cairo-1.17.4-7.el9.x86_64 cairo-devel-1.17.4-7.el9.x86_64 cmake-filesystem-3.31.8-3.el9.x86_64 copy-jdk-configs-4.0-3.el9.noarch cpp-11.5.0-14.el9.x86_64 crypto-policies-scripts-20251126-1.gite9c4db2.el9.noarch cups-libs-1:2.3.3op2-36.el9.x86_64 dbus-libs-1:1.12.20-8.el9.x86_64 dejavu-sans-fonts-2.37-18.el9.noarch emacs-filesystem-1:27.2-18.el9.noarch expat-2.5.0-6.el9.x86_64 flexiblas-3.0.4-8.el9.x86_64 flexiblas-devel-3.0.4-8.el9.x86_64 flexiblas-netlib-3.0.4-8.el9.x86_64 flexiblas-netlib64-3.0.4-8.el9.x86_64 flexiblas-openblas-openmp-3.0.4-8.el9.x86_64 flexiblas-openblas-openmp64-3.0.4-8.el9.x86_64 fontconfig-2.14.0-2.el9.x86_64 fontconfig-devel-2.14.0-2.el9.x86_64 fonts-filesystem-1:2.0.5-7.el9.1.noarch freetype-2.10.4-11.el9.x86_64 freetype-devel-2.10.4-11.el9.x86_64 fribidi-1.0.10-6.el9.2.x86_64 fribidi-devel-1.0.10-6.el9.2.x86_64 gcc-11.5.0-14.el9.x86_64 gcc-c++-11.5.0-14.el9.x86_64 gcc-gfortran-11.5.0-14.el9.x86_64 gcc-plugin-annobin-11.5.0-14.el9.x86_64 gettext-0.21-8.el9.x86_64 gettext-libs-0.21-8.el9.x86_64 ghostscript-9.54.0-19.el9.x86_64 ghostscript-tools-fonts-9.54.0-19.el9.x86_64 ghostscript-tools-printing-9.54.0-19.el9.x86_64 glib2-2.68.4-18.el9.x86_64 glib2-devel-2.68.4-18.el9.x86_64 glibc-devel-2.34-245.el9.x86_64 glibc-headers-2.34-245.el9.x86_64 gnutls-3.8.10-1.el9.x86_64 google-droid-sans-fonts-20200215-11.el9.2.noarch 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libXft-devel-2.3.3-8.el9.x86_64 libXi-1.7.10-8.el9.x86_64 libXmu-1.1.3-8.el9.x86_64 libXmu-devel-1.1.3-8.el9.x86_64 libXpm-3.5.13-10.el9.x86_64 libXrender-0.9.10-16.el9.x86_64 libXrender-devel-0.9.10-16.el9.x86_64 libXt-1.2.0-6.el9.x86_64 libXt-devel-1.2.0-6.el9.x86_64 libXtst-1.2.3-16.el9.x86_64 libblkid-devel-2.37.4-21.el9.x86_64 libcurl-devel-7.76.1-38.el9.x86_64 libdatrie-0.2.13-4.el9.x86_64 libdatrie-devel-0.2.13-4.el9.x86_64 libdeflate-1.25-1.el9.x86_64 libdeflate-devel-1.25-1.el9.x86_64 libedit-3.1-38.20210216cvs.el9.x86_64 libffi-devel-3.4.2-8.el9.x86_64 libfontenc-1.1.3-17.el9.x86_64 libgfortran-11.5.0-14.el9.x86_64 libgs-9.54.0-19.el9.x86_64 libicu-67.1-10.el9.x86_64 libicu-devel-67.1-10.el9.x86_64 libijs-0.35-15.el9.x86_64 libjpeg-turbo-2.0.90-7.el9.x86_64 libjpeg-turbo-devel-2.0.90-7.el9.x86_64 libmount-devel-2.37.4-21.el9.x86_64 libmpc-1.2.1-4.el9.x86_64 libpaper-1.1.28-4.el9.x86_64 libpng-2:1.6.37-12.el9.x86_64 libpng-devel-2:1.6.37-12.el9.x86_64 libquadmath-11.5.0-14.el9.x86_64 libquadmath-devel-11.5.0-14.el9.x86_64 libselinux-devel-3.6-3.el9.x86_64 libsepol-devel-3.6-3.el9.x86_64 libstdc++-devel-11.5.0-14.el9.x86_64 libthai-0.1.28-8.el9.x86_64 libthai-devel-0.1.28-8.el9.x86_64 libtiff-4.4.0-15.el9.x86_64 libtiff-devel-4.4.0-15.el9.x86_64 libtirpc-1.3.3-9.el9.x86_64 libtirpc-devel-1.3.3-9.el9.x86_64 libtool-2.4.6-46.el9.x86_64 libwebp-1.2.0-8.el9.x86_64 libxcb-1.13.1-9.el9.x86_64 libxcb-devel-1.13.1-9.el9.x86_64 libxcrypt-devel-4.4.18-3.el9.x86_64 libxml2-devel-2.9.13-14.el9.x86_64 libzstd-devel-1.5.5-1.el9.x86_64 lksctp-tools-1.0.19-2.el9.x86_64 llvm-filesystem-21.1.7-1.el9.x86_64 llvm-libs-21.1.7-1.el9.x86_64 lua-5.4.4-4.el9.x86_64 lua-posix-35.0-8.el9.x86_64 m4-1.4.19-1.el9.x86_64 mkfontscale-1.2.1-3.el9.x86_64 ncurses-c++-libs-6.2-12.20210508.el9.x86_64 ncurses-devel-6.2-12.20210508.el9.x86_64 nettle-3.10.1-1.el9.x86_64 nspr-4.36.0-4.el9.x86_64 nss-3.112.0-4.el9.x86_64 nss-softokn-3.112.0-4.el9.x86_64 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texlive-intcalc-9:20200406-26.el9.noarch texlive-jknapltx-9:20200406-26.el9.noarch texlive-kastrup-9:20200406-26.el9.noarch texlive-knuth-lib-9:20200406-26.el9.noarch texlive-knuth-local-9:20200406-26.el9.noarch texlive-koma-script-9:20200406-26.el9.noarch texlive-kpathsea-9:20200406-26.el9.x86_64 texlive-kvdefinekeys-9:20200406-26.el9.noarch texlive-kvoptions-9:20200406-26.el9.noarch texlive-kvsetkeys-9:20200406-26.el9.noarch texlive-l3backend-9:20200406-26.el9.noarch texlive-l3experimental-9:20200406-26.el9.noarch texlive-l3kernel-9:20200406-26.el9.noarch texlive-l3packages-9:20200406-26.el9.noarch texlive-latex-9:20200406-26.el9.noarch texlive-latex-fonts-9:20200406-26.el9.noarch texlive-latexbug-9:20200406-26.el9.noarch texlive-latexconfig-9:20200406-26.el9.noarch texlive-letltxmacro-9:20200406-26.el9.noarch texlive-lib-9:20200406-26.el9.x86_64 texlive-lineno-9:20200406-26.el9.noarch texlive-listings-9:20200406-26.el9.noarch texlive-lm-9:20200406-26.el9.noarch texlive-lm-math-9:20200406-26.el9.noarch texlive-ltabptch-9:20200406-26.el9.noarch texlive-ltxcmds-9:20200406-26.el9.noarch texlive-ltxmisc-9:20200406-26.el9.noarch texlive-lua-alt-getopt-9:20200406-26.el9.noarch texlive-luahbtex-9:20200406-26.el9.x86_64 texlive-lualatex-math-9:20200406-26.el9.noarch texlive-lualibs-9:20200406-26.el9.noarch texlive-luaotfload-9:20200406-26.el9.noarch texlive-luatex-9:20200406-26.el9.x86_64 texlive-luatexbase-9:20200406-26.el9.noarch texlive-lwarp-9:20200406-26.el9.noarch texlive-makecmds-9:20200406-26.el9.noarch texlive-makeindex-9:20200406-26.el9.x86_64 texlive-manfnt-font-9:20200406-26.el9.noarch texlive-marginnote-9:20200406-26.el9.noarch texlive-marvosym-9:20200406-26.el9.noarch texlive-mathpazo-9:20200406-26.el9.noarch texlive-mathspec-9:20200406-26.el9.noarch texlive-mathtools-9:20200406-26.el9.noarch texlive-mdwtools-9:20200406-26.el9.noarch texlive-memoir-9:20200406-26.el9.noarch texlive-metafont-9:20200406-26.el9.x86_64 texlive-metalogo-9:20200406-26.el9.noarch texlive-mflogo-9:20200406-26.el9.noarch texlive-mflogo-font-9:20200406-26.el9.noarch texlive-mfnfss-9:20200406-26.el9.noarch texlive-mfware-9:20200406-26.el9.x86_64 texlive-microtype-9:20200406-26.el9.noarch texlive-minitoc-9:20200406-26.el9.noarch texlive-mnsymbol-9:20200406-26.el9.noarch texlive-modes-9:20200406-26.el9.noarch texlive-mparhack-9:20200406-26.el9.noarch texlive-mptopdf-9:20200406-26.el9.noarch texlive-ms-9:20200406-26.el9.noarch texlive-multido-9:20200406-26.el9.noarch texlive-natbib-9:20200406-26.el9.noarch texlive-ncntrsbk-9:20200406-26.el9.noarch texlive-newfloat-9:20200406-26.el9.noarch texlive-notoccite-9:20200406-26.el9.noarch texlive-ntgclass-9:20200406-26.el9.noarch texlive-oberdiek-9:20200406-26.el9.noarch texlive-palatino-9:20200406-26.el9.noarch texlive-paralist-9:20200406-26.el9.noarch texlive-parallel-9:20200406-26.el9.noarch texlive-parskip-9:20200406-26.el9.noarch texlive-pdfcolmk-9:20200406-26.el9.noarch texlive-pdfescape-9:20200406-26.el9.noarch texlive-pdflscape-9:20200406-26.el9.noarch texlive-pdfpages-9:20200406-26.el9.noarch texlive-pdftex-9:20200406-26.el9.x86_64 texlive-pdftexcmds-9:20200406-26.el9.noarch texlive-pgf-9:20200406-26.el9.noarch texlive-placeins-9:20200406-26.el9.noarch texlive-plain-9:20200406-26.el9.noarch texlive-polyglossia-9:20200406-26.el9.noarch texlive-psfrag-9:20200406-26.el9.noarch texlive-pslatex-9:20200406-26.el9.noarch texlive-psnfss-9:20200406-26.el9.noarch texlive-pspicture-9:20200406-26.el9.noarch texlive-pst-3d-9:20200406-26.el9.noarch texlive-pst-arrow-9:20200406-26.el9.noarch texlive-pst-coil-9:20200406-26.el9.noarch texlive-pst-eps-9:20200406-26.el9.noarch texlive-pst-fill-9:20200406-26.el9.noarch texlive-pst-grad-9:20200406-26.el9.noarch texlive-pst-math-9:20200406-26.el9.noarch texlive-pst-node-9:20200406-26.el9.noarch texlive-pst-plot-9:20200406-26.el9.noarch texlive-pst-text-9:20200406-26.el9.noarch texlive-pst-tools-9:20200406-26.el9.noarch texlive-pst-tree-9:20200406-26.el9.noarch texlive-pstricks-9:20200406-26.el9.noarch texlive-pstricks-add-9:20200406-26.el9.noarch texlive-pxfonts-9:20200406-26.el9.noarch texlive-qstest-9:20200406-26.el9.noarch texlive-ragged2e-9:20200406-26.el9.noarch texlive-rcs-9:20200406-26.el9.noarch texlive-realscripts-9:20200406-26.el9.noarch texlive-refcount-9:20200406-26.el9.noarch texlive-rerunfilecheck-9:20200406-26.el9.noarch texlive-rsfs-9:20200406-26.el9.noarch texlive-sansmath-9:20200406-26.el9.noarch texlive-sansmathaccent-9:20200406-26.el9.noarch texlive-sauerj-9:20200406-26.el9.noarch texlive-section-9:20200406-26.el9.noarch texlive-seminar-9:20200406-26.el9.noarch texlive-sepnum-9:20200406-26.el9.noarch texlive-setspace-9:20200406-26.el9.noarch texlive-showexpl-9:20200406-26.el9.noarch texlive-soul-9:20200406-26.el9.noarch texlive-stringenc-9:20200406-26.el9.noarch texlive-subfig-9:20200406-26.el9.noarch texlive-symbol-9:20200406-26.el9.noarch texlive-tex-9:20200406-26.el9.x86_64 texlive-tex-gyre-9:20200406-26.el9.noarch texlive-tex-gyre-math-9:20200406-26.el9.noarch texlive-tex-ini-files-9:20200406-26.el9.noarch texlive-texlive-common-doc-9:20200406-26.el9.noarch texlive-texlive-docindex-9:20200406-26.el9.noarch texlive-texlive-en-9:20200406-26.el9.noarch texlive-texlive-msg-translations-9:20200406-26.el9.noarch texlive-texlive-scripts-9:20200406-26.el9.noarch texlive-texlive-scripts-extra-9:20200406-26.el9.noarch texlive-texlive.infra-9:20200406-26.el9.noarch texlive-textcase-9:20200406-26.el9.noarch texlive-thumbpdf-9:20200406-26.el9.noarch texlive-times-9:20200406-26.el9.noarch texlive-tipa-9:20200406-26.el9.noarch texlive-titlesec-9:20200406-26.el9.noarch texlive-tools-9:20200406-26.el9.noarch texlive-translator-9:20200406-26.el9.noarch texlive-txfonts-9:20200406-26.el9.noarch texlive-typehtml-9:20200406-26.el9.noarch texlive-ucharcat-9:20200406-26.el9.noarch texlive-ucs-9:20200406-26.el9.noarch texlive-underscore-9:20200406-26.el9.noarch texlive-unicode-data-9:20200406-26.el9.noarch texlive-unicode-math-9:20200406-26.el9.noarch texlive-uniquecounter-9:20200406-26.el9.noarch texlive-updmap-map-9:20200406-26.el9.noarch texlive-upquote-9:20200406-26.el9.noarch texlive-url-9:20200406-26.el9.noarch texlive-utopia-9:20200406-26.el9.noarch texlive-varwidth-9:20200406-26.el9.noarch texlive-wasy-9:20200406-26.el9.noarch texlive-wasy-type1-9:20200406-26.el9.noarch texlive-wasysym-9:20200406-26.el9.noarch texlive-xcolor-9:20200406-26.el9.noarch texlive-xdvi-9:20200406-26.el9.x86_64 texlive-xetex-9:20200406-26.el9.x86_64 texlive-xetexconfig-9:20200406-26.el9.noarch texlive-xifthen-9:20200406-26.el9.noarch texlive-xkeyval-9:20200406-26.el9.noarch texlive-xltxtra-9:20200406-26.el9.noarch texlive-xunicode-9:20200406-26.el9.noarch texlive-zapfchan-9:20200406-26.el9.noarch texlive-zapfding-9:20200406-26.el9.noarch texlive-zref-9:20200406-26.el9.noarch tk-1:8.6.10-9.el9.x86_64 tk-devel-1:8.6.10-9.el9.x86_64 tre-0.8.0-34.20140228gitc2f5d13.el9.x86_64 tre-common-0.8.0-34.20140228gitc2f5d13.el9.noarch tre-devel-0.8.0-34.20140228gitc2f5d13.el9.x86_64 ttmkfdir-3.0.9-65.el9.x86_64 tzdata-java-2025c-1.el9.noarch urw-base35-bookman-fonts-20200910-6.el9.noarch urw-base35-c059-fonts-20200910-6.el9.noarch urw-base35-d050000l-fonts-20200910-6.el9.noarch urw-base35-fonts-20200910-6.el9.noarch urw-base35-fonts-common-20200910-6.el9.noarch urw-base35-gothic-fonts-20200910-6.el9.noarch urw-base35-nimbus-mono-ps-fonts-20200910-6.el9.noarch urw-base35-nimbus-roman-fonts-20200910-6.el9.noarch urw-base35-nimbus-sans-fonts-20200910-6.el9.noarch urw-base35-p052-fonts-20200910-6.el9.noarch urw-base35-standard-symbols-ps-fonts-20200910-6.el9.noarch urw-base35-z003-fonts-20200910-6.el9.noarch valgrind-devel-1:3.26.0-1.el9.x86_64 xml-common-0.6.3-58.el9.noarch xorg-x11-fonts-Type1-7.5-33.el9.noarch xorg-x11-proto-devel-2024.1-1.el9.noarch xz-devel-5.2.5-8.el9.x86_64 zlib-devel-1.2.11-41.el9.x86_64 zziplib-0.13.71-12.el9.x86_64 Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1761868800 Wrote: /builddir/build/SRPMS/R-4.5.2-1.el9.1.eel9.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 68 kB/s | 1.5 kB 00:00 Additional repo https_mirror_stream_centos_org_ 50 kB/s | 4.3 kB 00:00 Additional repo https_mirror_stream_centos_org_ 477 kB/s | 4.4 kB 00:00 Additional repo https_mirror_stream_centos_org_ 377 kB/s | 3.9 kB 00:00 Additional repo https_dl_fedoraproject_org_pub_ 89 kB/s | 4.0 kB 00:00 Additional repo https_dl_fedoraproject_org_pub_ 91 kB/s | 3.9 kB 00:00 Additional repo https_yum_oracle_com_repo_Oracl 213 kB/s | 3.8 kB 00:00 Package autoconf-2.69-41.el9.noarch is already installed. Package automake-1.16.2-8.el9.noarch is already installed. Package bzip2-devel-1.0.8-10.el9.x86_64 is already installed. Package cairo-devel-1.17.4-7.el9.x86_64 is already installed. Package flexiblas-devel-3.0.4-8.el9.x86_64 is already installed. Package gcc-c++-11.5.0-14.el9.x86_64 is already installed. Package gcc-gfortran-11.5.0-14.el9.x86_64 is already installed. Package java-17-openjdk-devel-1:17.0.17.0.10-1.el9.x86_64 is already installed. Package less-590-6.el9.x86_64 is already installed. Package libICE-devel-1.0.10-8.el9.x86_64 is already installed. Package libSM-devel-1.2.3-10.el9.x86_64 is already installed. Package libX11-devel-1.8.12-1.el9.x86_64 is already installed. Package libXmu-devel-1.1.3-8.el9.x86_64 is already installed. Package libXt-devel-1.2.0-6.el9.x86_64 is already installed. Package libcurl-devel-7.76.1-38.el9.x86_64 is already installed. Package libdeflate-devel-1.25-1.el9.x86_64 is already installed. Package libicu-devel-67.1-10.el9.x86_64 is already installed. Package libjpeg-turbo-devel-2.0.90-7.el9.x86_64 is already installed. Package libpng-devel-2:1.6.37-12.el9.x86_64 is already installed. Package libtiff-devel-4.4.0-15.el9.x86_64 is already installed. Package libtirpc-devel-1.3.3-9.el9.x86_64 is already installed. Package libtool-2.4.6-46.el9.x86_64 is already installed. Package libzstd-devel-1.5.5-1.el9.x86_64 is already installed. Package ncurses-devel-6.2-12.20210508.el9.x86_64 is already installed. Package pango-devel-1.48.7-3.el9.x86_64 is already installed. Package pcre2-devel-10.40-6.el9.x86_64 is already installed. Package readline-devel-8.1-4.el9.x86_64 is already installed. Package tcl-devel-1:8.6.10-7.el9.x86_64 is already installed. Package texlive-collection-latexrecommended-9:20200406-26.el9.noarch is already installed. Package texlive-upquote-9:20200406-26.el9.noarch is already installed. Package texinfo-tex-6.7-15.el9.x86_64 is already installed. Package tk-devel-1:8.6.10-9.el9.x86_64 is already installed. Package tre-devel-0.8.0-34.20140228gitc2f5d13.el9.x86_64 is already installed. Package valgrind-devel-1:3.26.0-1.el9.x86_64 is already installed. Package xz-devel-5.2.5-8.el9.x86_64 is already installed. Package zlib-devel-1.2.11-41.el9.x86_64 is already installed. Dependencies resolved. Nothing to do. Complete! Finish: build setup for R-4.5.2-1.el9.1.eel9.src.rpm Start: rpmbuild R-4.5.2-1.el9.1.eel9.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1761868800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.RTinpK + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf R-4.5.2 + /usr/bin/gzip -dc /builddir/build/SOURCES/R-4.5.2.tar.gz + /usr/bin/tar -xof - /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' /usr/bin/tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.provenance' + STATUS=0 + '[' 0 -ne 0 ']' + cd R-4.5.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (R-3.3.0-fix-java_path-in-javareconf.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .fixpath --fuzz=0 Patch #0 (R-3.3.0-fix-java_path-in-javareconf.patch): patching file src/scripts/javareconf.in Hunk #1 succeeded at 79 (offset 1 line). + find . -name '._*' -delete + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.bab7fc + umask 022 + cd /builddir/build/BUILD + cd R-4.5.2 + sed -i -e '/R_LIBS_SITE=/s/^/#/g' etc/Renviron.in + echo 'R_LIBS_SITE=${R_LIBS_SITE-'\''/usr/local/lib/R/site-library:/usr/local/lib/R/library:/usr/lib64/R/library:/usr/share/R/library'\''}' + export R_RD4PDF=times,hyper + R_RD4PDF=times,hyper + sed -i 's|inconsolata,||g' etc/Renviron.in + export R_PDFVIEWER=/usr/bin/xdg-open + R_PDFVIEWER=/usr/bin/xdg-open + export R_BROWSER=/usr/bin/xdg-open + R_BROWSER=/usr/bin/xdg-open + export JAVA_HOME=/usr/lib/jvm/jre + JAVA_HOME=/usr/lib/jvm/jre + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2025-10-31 08:02:08.439344846 +0000 +++ ./configure 2026-01-08 07:57:37.133685137 +0000 @@ -12322,7 +12322,7 @@ # Transform an extracted symbol line into a proper C declaration. # Some systems (esp. on ia64) link data and code symbols differently, # so use this general approach. -lt_cv_sys_global_symbol_to_cdecl="sed -n"\ +lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" $lt_cdecl_hook\ " -e 's/^T .* \(.*\)$/extern int \1();/p'"\ " -e 's/^$symcode$symcode* .* \(.*\)$/extern char \1;/p'" @@ -64922,7 +64922,7 @@ compiler='`$ECHO "$compiler" | $SED "$delay_single_quote_subst"`' GCC='`$ECHO "$GCC" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_pipe='`$ECHO "$lt_cv_sys_global_symbol_pipe" | $SED "$delay_single_quote_subst"`' -lt_cv_sys_global_symbol_to_cdecl='`$ECHO "$lt_cv_sys_global_symbol_to_cdecl" | $SED "$delay_single_quote_subst"`' +lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" lt_cv_sys_global_symbol_to_import='`$ECHO "$lt_cv_sys_global_symbol_to_import" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_to_c_name_address='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address_lib_prefix" | $SED "$delay_single_quote_subst"`' + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./tools/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./tools/config.sub ++ basename ./tools/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./tools/config.sub '/usr/lib/rpm/redhat/config.sub' -> './tools/config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./tools/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./tools/config.guess ++ basename ./tools/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./tools/config.guess '/usr/lib/rpm/redhat/config.guess' -> './tools/config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./tools/ltmain.sh + ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info rdocdir=/usr/share/doc/R rincludedir=/usr/include/R rsharedir=/usr/share/R --with-system-tre --with-blas=flexiblas --with-lapack --with-tcl-config=/usr/lib64/tclConfig.sh --with-tk-config=/usr/lib64/tkConfig.sh --enable-R-shlib --enable-prebuilt-html --enable-R-profiling --enable-memory-profiling + tee CONFIGURE.log configure: WARNING: unrecognized options: --disable-dependency-tracking checking build system type... x86_64-redhat-linux-gnu checking host system type... x86_64-redhat-linux-gnu loading site script './config.site' loading build-specific script './config.site' checking for pwd... /usr/bin/pwd checking whether builddir is srcdir... yes checking whether ln -s works... yes checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /usr/bin/sed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for gtar... /usr/bin/gtar checking for tex... /usr/bin/tex checking for pdftex... /usr/bin/pdftex checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for texi2any... /usr/bin/texi2any checking whether texi2any version is at least 6.1... yes checking for ginstall-info... no checking for install-info... /usr/sbin/install-info checking for texi2dvi... /usr/bin/texi2dvi checking for kpsewhich... /usr/bin/kpsewhich checking for latex inconsolata package... checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /usr/bin/gzip checking for bzip2... /usr/bin/bzip2 using default browser ... /usr/bin/xdg-open checking for /usr/bin/xdg-open... /usr/bin/xdg-open checking for working aclocal... found checking for working autoconf... found checking for working autoheader... found checking for bison... no checking for byacc... no checking for yacc... no checking for notangle... false checking for realpath... /usr/bin/realpath checking for pkg-config... /usr/bin/pkg-config checking for x86_64-redhat-linux-gnu-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for wchar.h... yes checking for minix/config.h... no checking for sys/time.h... yes checking for sys/param.h... yes checking whether it is safe to define __EXTENSIONS__... yes checking whether _XOPEN_SOURCE should be defined... no checking whether gcc is a C23 compiler... no checking whether gcc -std=gnu23 is a C23 compiler... no checking whether gcc -std=gnu2x is a C23 compiler... no checking how to run the C preprocessor... configure: WARNING: C23 support is unavailable gcc -E looking for a modern Fortran compiler checking for x86_64-redhat-linux-gnu-gfortran... no checking for x86_64-redhat-linux-gnu-g95... no checking for x86_64-redhat-linux-gnu-xlf95... no checking for x86_64-redhat-linux-gnu-f95... no checking for x86_64-redhat-linux-gnu-fort... no checking for x86_64-redhat-linux-gnu-ifort... no checking for x86_64-redhat-linux-gnu-ifc... no checking for x86_64-redhat-linux-gnu-efc... no checking for x86_64-redhat-linux-gnu-pgfortran... no checking for x86_64-redhat-linux-gnu-pgf95... no checking for x86_64-redhat-linux-gnu-lf95... no checking for x86_64-redhat-linux-gnu-ftn... no checking for x86_64-redhat-linux-gnu-nagfor... no checking for x86_64-redhat-linux-gnu-xlf90... no checking for x86_64-redhat-linux-gnu-f90... no checking for x86_64-redhat-linux-gnu-pgf90... no checking for x86_64-redhat-linux-gnu-pghpf... no checking for x86_64-redhat-linux-gnu-epcf90... no checking for x86_64-redhat-linux-gnu-g77... no checking for x86_64-redhat-linux-gnu-xlf... no checking for x86_64-redhat-linux-gnu-f77... no checking for x86_64-redhat-linux-gnu-frt... no checking for x86_64-redhat-linux-gnu-pgf77... no checking for x86_64-redhat-linux-gnu-cf77... no checking for x86_64-redhat-linux-gnu-fort77... no checking for x86_64-redhat-linux-gnu-fl32... no checking for x86_64-redhat-linux-gnu-af77... no checking for gfortran... gfortran checking whether the compiler supports GNU Fortran... yes checking whether gfortran accepts -g... yes checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection can compile C++ code... yes checking how to run the C++ preprocessor... g++ -E checking whether __attribute__((visibility())) is supported... yes checking whether gcc accepts -fvisibility... yes checking whether g++ accepts -fvisibility... yes checking whether gfortran accepts -fvisibility... yes checking for x86_64-redhat-linux-gnu-gcc... no checking for x86_64-redhat-linux-gnu-objcc... no checking for x86_64-redhat-linux-gnu-objc... no checking for x86_64-redhat-linux-gnu-cc... no checking for x86_64-redhat-linux-gnu-CC... no checking for x86_64-redhat-linux-gnu-clang... no checking for gcc... gcc checking whether the compiler supports GNU Objective C... no checking whether gcc accepts -g... no checking whether gcc -std=gnu17 is a C17 compiler... yes checking whether gcc -std=gnu90 is a C90 compiler... yes checking whether gcc -std=gnu99 is a C99 compiler... yes checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-redhat-linux-gnu file names to x86_64-redhat-linux-gnu format... func_convert_file_noop checking how to convert x86_64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for x86_64-redhat-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-redhat-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-redhat-linux-gnu-ar... (cached) ar checking for archiver @FILE support... @ checking for x86_64-redhat-linux-gnu-strip... no checking for strip... strip checking for x86_64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking for gawk... gawk checking command to parse /usr/bin/nm -B output from gcc object... ./configure: line 12328: -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p': No such file or directory ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for x86_64-redhat-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for sin in -lm... yes checking for dlopen in -ldl... yes checking for readline/history.h... yes checking for readline/readline.h... yes checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking for tilde_expand_word... yes checking whether rl_completion_matches exists and is declared... yes checking whether rl_resize_terminal exists and is declared... yes checking whether rl_sort_completion_matches exists and is declared... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking for dlfcn.h... (cached) yes checking for fcntl.h... yes checking for glob.h... yes checking for grp.h... yes checking for pwd.h... yes checking for sched.h... yes checking for strings.h... (cached) yes checking for sys/resource.h... yes checking for sys/select.h... yes checking for sys/socket.h... yes checking for sys/stat.h... (cached) yes checking for sys/time.h... (cached) yes checking for sys/times.h... yes checking for sys/utsname.h... yes checking for unistd.h... (cached) yes checking for utime.h... yes checking for arpa/inet.h... yes checking for elf.h... yes checking for features.h... yes checking for floatingpoint.h... no checking for langinfo.h... yes checking for netdb.h... yes checking for netinet/in.h... yes checking for sys/param.h... (cached) yes checking for stdalign.h... yes checking for errno.h... yes checking for inttypes.h... (cached) yes checking for limits.h... yes checking for locale.h... yes checking for stdarg.h... yes checking for stdbool.h... yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking for gcc options needed to detect all undeclared functions... none needed checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking for egrep -e... (cached) /usr/bin/grep -E checking for GNU C library with version >= 2... yes checking for uint64_t... yes checking for int64_t... yes checking for int_fast64_t... yes checking for pid_t... yes checking for size_t... yes checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes checking for type of socket length... socklen_t * checking for stack_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of double... 8 checking size of size_t... 8 checking for C stack direction... down checking size of long double... 16 checking whether we can compute C Make dependencies... yes, using $(CC) -MM checking whether gcc supports -c -o FILE.lo... yes checking for gcc option to support OpenMP... -fopenmp checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/usr/lib/gcc/x86_64-redhat-linux/11 -L/usr/lib/gcc/x86_64-redhat-linux/11/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/11/../../.. -lgfortran -lm -lquadmath checking how to get verbose linking output from gcc... -v checking for C libraries of gcc... -L/usr/lib/gcc/x86_64-redhat-linux/11 -L/usr/lib/gcc/x86_64-redhat-linux/11/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/11/../../.. -lgcc_s checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking whether gfortran appends underscores to external names... yes checking whether gfortran appends extra underscores to external names... no checking whether mixed C/Fortran code can be run... yes checking whether gfortran and gcc agree on int and double... yes checking whether gfortran and gcc agree on double complex... yes checking for gfortran option to support OpenMP... -fopenmp checking whether g++ accepts -M for generating dependencies... yes checking whether we can compute ObjC Make dependencies... no checking for type of 'hidden' Fortran character lengths... size_t checking for xmkmf... no checking whether g++ supports C++11 features with -std=gnu++11... yes checking whether g++ supports C++14 features with -std=gnu++14... yes checking whether g++ supports C++17 features with -std=gnu++17... yes checking whether g++ supports C++20 features with -std=gnu++20... yes checking whether g++ supports C++23 features with -std=gnu++23... yes checking whether g++ supports C++26 features with -std=gnu++26... no checking whether g++ supports C++26 features with -std=gnu++2... no checking whether g++ supports C++26 features with -std=c++26... no checking whether g++ supports C++26 features with +std=c++26... no checking whether g++ supports C++26 features with -std:c++26... no checking whether g++ supports C++26 features with -std=c++2... no checking whether g++ supports C++26 features with +std=c++2... no checking whether g++ supports C++26 features with -std:c++2... no checking whether g++ supports C++26 features by default... no configure: No compiler with C++26 support was found checking whether g++ -std=gnu++17 can compile ObjC++... no checking whether can compile ObjC++... no checking for Objective C++ compiler... no working ObjC++ compiler found checking for g++ -std=gnu++17 option to support OpenMP... -fopenmp checking for option providing pthread_kill... none required checking whether POSIX threads are supported... yes checking for off_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether alloca is declared... yes checking whether expm1 exists and is declared... yes checking whether hypot exists and is declared... yes checking whether log1p exists and is declared... yes checking whether log1pl exists and is declared... yes checking whether log2 exists and is declared... yes checking whether log10 exists and is declared... yes checking whether nearbyint exists and is declared... yes checking whether nearbyintl exists and is declared... yes checking whether powl exists and is declared... yes checking whether rintl exists and is declared... yes checking whether va_copy exists and is declared... yes checking for isblank... yes checking for sunmath.h... no checking for cospi in -lsunmath... no checking for atanpi... no checking for atan2pi... no checking for cospi... no checking for exp10... yes checking for pown... no checking for sinpi... no checking for tanpi... no checking for __cospi... no checking for __sinpi... no checking for __tanpi... no checking for fseeko... yes checking for ftello... yes checking whether fcntl exists and is declared... yes checking whether getgrgid exists and is declared... yes checking whether getpwnam exists and is declared... yes checking whether getpwuid exists and is declared... yes checking whether kill exists and is declared... yes checking whether sigaction exists and is declared... yes checking whether sigaltstack exists and is declared... yes checking whether sigemptyset exists and is declared... yes checking whether fdopen exists and is declared... yes checking whether popen exists and is declared... yes checking whether getline exists and is declared... yes checking whether select exists and is declared... yes checking whether setenv exists and is declared... yes checking whether unsetenv exists and is declared... yes checking whether getrlimit exists and is declared... yes checking whether setrlimit exists and is declared... yes checking whether getrusage exists and is declared... yes checking whether getpriority exists and is declared... yes checking whether chmod exists and is declared... yes checking whether mkfifo exists and is declared... yes checking whether stat exists and is declared... yes checking whether umask exists and is declared... yes checking whether gettimeofday exists and is declared... yes checking whether utimes exists and is declared... yes checking whether times exists and is declared... yes checking whether gmtime_r exists and is declared... yes checking whether localtime_r exists and is declared... yes checking whether nl_langinfo exists and is declared... yes checking whether access exists and is declared... yes checking whether chdir exists and is declared... yes checking whether execv exists and is declared... yes checking whether ftruncate exists and is declared... yes checking whether getcwd exists and is declared... yes checking whether geteuid exists and is declared... yes checking whether getuid exists and is declared... yes checking whether link exists and is declared... yes checking whether readlink exists and is declared... yes checking whether symlink exists and is declared... yes checking whether sysconf exists and is declared... yes checking whether sched_setaffinity exists and is declared... yes checking whether sched_getaffinity exists and is declared... yes checking whether utime exists and is declared... yes checking whether utimensat exists and is declared... yes checking for clock_gettime in -lrt... yes checking whether clock_gettime exists and is declared... yes checking whether timespec_get exists and is declared... yes checking for putenv... yes checking whether putenv is declared... yes checking for vasprintf... yes checking whether vasprintf is declared... yes checking for mempcpy... yes checking for realpath... yes checking whether realpath is declared... yes checking whether glob exists and is declared... yes checking for dladdr... yes checking for dlsym... yes checking whether dladdr is declared... yes checking whether dlsym is declared... yes checking whether RTLD_DEFAULT is declared... yes checking whether RTLD_NEXT is declared... yes checking for thread.h... no checking whether thr_stksegment exists and is declared... no checking for stpcpy... yes checking for isnan... yes checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point arithmetic... yes checking whether putenv("FOO") can unset an environment variable... yes checking whether putenv("FOO=") can unset an environment variable... no checking for nl_langinfo and CODESET... yes checking for mkdtemp... yes checking for strdup... yes checking for strncasecmp... yes checking whether mkdtemp is declared... yes checking whether strdup is declared... yes checking whether strncasecmp is declared... yes checking for library containing connect... none required checking for library containing gethostbyname... none required checking for working calloc... yes checking for working isfinite... yes checking for working log1p... yes checking whether ftell works correctly on files opened for append... yes checking for working sigaction... yes checking whether the base type of an enum can be specified... no checking whether mktime, gmtime, localtime work correctly in 2020... yes checking whether mktime sets errno... yes checking whether mktime works correctly after 2037... yes checking whether mktime works correctly before 1902... yes checking whether mktime works correctly in 1969... yes checking for complex.h... yes checking for double complex... yes checking whether C99 double complex is supported... yes checking whether cabs exists and is declared... yes checking whether carg exists and is declared... yes checking whether cexp exists and is declared... yes checking whether clog exists and is declared... yes checking whether csqrt exists and is declared... yes checking whether cpow exists and is declared... yes checking whether ccos exists and is declared... yes checking whether csin exists and is declared... yes checking whether ctan exists and is declared... yes checking whether cacos exists and is declared... yes checking whether casin exists and is declared... yes checking whether catan exists and is declared... yes checking whether ccosh exists and is declared... yes checking whether csinh exists and is declared... yes checking whether ctanh exists and is declared... yes checking for working ctanh... yes checking whether 'struct tm' includes tm_zone... yes checking whether 'struct tm' includes tm_gmtoff... yes checking for dgemm_ in -lflexiblas... yes checking whether double complex BLAS can be used... yes checking whether the BLAS is complete... yes checking for dpstrf_... yes checking for iconv.h... yes checking for iconv... yes checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes checking whether iconv accepts "CP1252"... yes checking for iconvlist... no checking for iconv... yes checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for wchar.h... (cached) yes checking for wctype.h... yes checking whether mbrtowc exists and is declared... yes checking whether wcrtomb exists and is declared... yes checking whether wcscoll exists and is declared... yes checking whether wcsftime exists and is declared... yes checking whether wcstod exists and is declared... yes checking whether mbstowcs exists and is declared... yes checking whether wcstombs exists and is declared... yes checking whether wctrans exists and is declared... yes checking whether wctype exists and is declared... yes checking whether iswctype exists and is declared... yes checking whether wcwidth exists and is declared... yes checking whether wcswidth exists and is declared... yes checking for wctrans_t... yes checking for mbstate_t... yes checking for ICU... yes checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for X11/Intrinsic.h... yes checking for XtToolkitInitialize in -lXt... yes using X11 ... yes checking for KeySym... yes checking for X11/Xmu/Atoms.h... yes checking for XmuInternAtom in -lXmu... yes checking whether pkg-config knows about cairo and pango... yes checking whether cairo including pango is >= 1.2 and works... yes checking for /usr/lib64/tclConfig.sh... /usr/lib64/tclConfig.sh checking for /usr/lib64/tkConfig.sh... /usr/lib64/tkConfig.sh checking for tcl.h... yes checking for tk.h... yes checking whether compiling/linking Tcl/Tk code works... yes checking for BSD networking... yes checking for rpc/types.h... no checking for tirpc/rpc/types.h... yes checking for tirpc/rpc/xdr.h... yes checking for XDR library... -ltirpc checking for XDR support... yes checking for inflateInit2_ in -lz... yes checking for zlib.h... yes checking if zlib version >= 1.2.5... yes checking whether zlib support suffices... yes checking for BZ2_bzlibVersion in -lbz2... yes checking for bzlib.h... yes checking if bzip2 version >= 1.0.6... yes checking whether bzip2 support suffices... yes checking for lzma_version_number in -llzma... yes checking for lzma.h... yes checking if lzma version >= 5.0.3... yes checking for ZSTD_versionNumber in -lzstd... yes checking for zstd.h... yes checking if zstd version >= 1.3.3... yes checking for ZSTD_decompressBound... yes checking for libdeflate.h... yes checking for libdeflate_alloc_compressor in -ldeflate... yes yes checking for pcre2.h... yes checking for pcre2_compile_8 in -lpcre2-8... yes checking if PCRE2 has Unicode support... yes checking whether PCRE support suffices... yes checking for tre_regncompb in -ltre... yes checking for tre/tre.h... yes checking for curl-config... /usr/bin/curl-config checking libcurl version ... 7.76.1 checking for curl/curl.h... yes checking if libcurl is >= 7.28.0... yes checking if libcurl supports https... yes checking if pkg-config knows about libjpeg... yes checking if jpeglib version >= 6b... yes checking for jpeg_destroy_compress in -ljpeg... yes checking if pkg-config knows about libpng... yes checking if libpng version >= 1.2.7... yes checking for png_create_write_struct in -lpng... yes checking if pkg-config knows about libtiff... yes checking for tiffio.h... yes checking for TIFFOpen in -ltiff... yes checking whether leap seconds are treated according to POSIX... yes checking for inline... inline checking for struct stat.st_atim.tv_nsec... yes checking whether struct stat.st_atim is of type struct timespec... yes checking for setitimer... yes checking for gcc option to enable large file support... none needed checking for declarations of fseeko and ftello... yes checking whether KERN_USRSTACK sysctl is supported... no checking for visible __lib_stack_end... yes checking for lpr... no checking for lp... no checking for paperconf... /usr/bin/paperconf checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .f95 files... none checking for gfortran option to support OpenMP... (cached) -fopenmp checking for recommended packages... yes checking whether NLS is requested... yes Configuring src/extra/intl directory checking for a race-free mkdir -p... /usr/bin/mkdir -p checking whether we are using the GNU C Library 2 or newer... yes checking for x86_64-redhat-linux-gnu-ranlib... ranlib checking for simple visibility declarations... yes checking for stdint.h... yes checking for getpagesize... yes checking for working mmap... yes checking whether integer division by zero raises SIGFPE... no checking for inttypes.h... yes checking for unsigned long long int... yes checking for inttypes.h... (cached) yes checking whether the inttypes.h PRIxNN macros are broken... no checking for ld used by gcc... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for shared library run path origin... done checking whether imported symbols can be declared weak... yes checking for multithread API to use... none checking for argz.h... yes checking for inttypes.h... (cached) yes checking for limits.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for getcwd... yes checking for getegid... yes checking for geteuid... yes checking for getgid... yes checking for getuid... yes checking for mempcpy... (cached) yes checking for munmap... yes checking for stpcpy... (cached) yes checking for strcasecmp... yes checking for strdup... (cached) yes checking for strtoul... yes checking for tsearch... yes checking for argz_count... yes checking for argz_stringify... yes checking for argz_next... yes checking for __fsetlocking... yes checking whether feof_unlocked is declared... yes checking whether fgets_unlocked is declared... yes checking for iconv... (cached) yes checking for iconv declaration... (cached) extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for NL_LOCALE_NAME macro... yes checking for bison... no checking for long long int... yes checking for long double... yes checking for wchar_t... yes checking for wint_t... yes checking for intmax_t... yes checking whether printf() supports POSIX/XSI format strings... yes checking whether we are using the GNU C Library 2.1 or newer... yes checking for stdint.h... (cached) yes checking for SIZE_MAX... yes checking for stdint.h... (cached) yes checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for ptrdiff_t... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for asprintf... yes checking for fwprintf... yes checking for putenv... (cached) yes checking for setenv... yes checking for setlocale... yes checking for snprintf... yes checking for wcslen... yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether getc_unlocked is declared... yes checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for CFPreferencesCopyAppValue... (cached) no checking for CFLocaleCopyCurrent... (cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc Finished configuring src/extra/intl directory checking whether OpenMP SIMD reduction is supported... yes using as R_SHELL for scripts ... /bin/sh configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/tzone/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/src/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/translations/DESCRIPTION config.status: creating src/library/translations/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/src/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands configure: WARNING: unrecognized options: --disable-dependency-tracking R is now configured for x86_64-redhat-linux-gnu Source directory: . Installation directory: /usr C compiler: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection Fortran fixed-form compiler: gfortran -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules Default C++ compiler: g++ -std=gnu++17 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection Fortran free-form compiler: gfortran -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules Obj-C compiler: Interfaces supported: X11, tcltk External libraries: pcre2, readline, BLAS(FlexiBlas), LAPACK(in blas), tre, curl, libdeflate Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU Options enabled: shared R library, R profiling, memory profiling, static HTML, libdeflate for lazyload Capabilities skipped: Options not enabled: shared BLAS Recommended packages: yes + cat CONFIGURE.log + grep -A30 'R is now' - + make V=1 make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/m4' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/m4' make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/tools' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/tools' make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/doc' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/doc/html' make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/doc/html' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/doc/manual' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/doc' make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/etc' make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/etc' make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/share' make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/share' make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/src' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/scripts' creating src/scripts/R.fe make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/scripts' mkdir -p -- ../../bin make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/scripts' make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/scripts' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/include' mkdir -p -- ../../include make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/include/R_ext' make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/include' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/extra' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/extra' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/appl' making integrate.d from integrate.c making interv.d from interv.c making maxcol.d from maxcol.c making optim.d from optim.c making pretty.d from pretty.c making uncmin.d from uncmin.c make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/appl' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c integrate.c -o integrate.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c interv.c -o interv.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c maxcol.c -o maxcol.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c optim.c -o optim.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pretty.c -o pretty.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c uncmin.c -o uncmin.o gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c dchdc.f -o dchdc.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c dpbfa.f -o dpbfa.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c dpbsl.f -o dpbsl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c dpoco.f -o dpoco.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c dpodi.f -o dpodi.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c dpofa.f -o dpofa.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c dposl.f -o dposl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c dqrdc.f -o dqrdc.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c dqrdc2.f -o dqrdc2.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c dqrls.f -o dqrls.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c dqrsl.f -o dqrsl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c dqrutl.f -o dqrutl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c dsvdc.f -o dsvdc.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c dtrco.f -o dtrco.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c dtrsl.f -o dtrsl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o ranlib libappl.a make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/appl' make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/appl' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/nmath' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making qnbinom_mu.d from qnbinom_mu.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mlutils.c -o mlutils.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c d1mach.c -o d1mach.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c i1mach.c -o i1mach.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fmax2.c -o fmax2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fmin2.c -o fmin2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fprec.c -o fprec.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fround.c -o fround.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ftrunc.c -o ftrunc.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sign.c -o sign.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fsign.c -o fsign.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c imax2.c -o imax2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c imin2.c -o imin2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c chebyshev.c -o chebyshev.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c log1p.c -o log1p.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lgammacor.c -o lgammacor.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gammalims.c -o gammalims.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c stirlerr.c -o stirlerr.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bd0.c -o bd0.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gamma.c -o gamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lgamma.c -o lgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gamma_cody.c -o gamma_cody.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c beta.c -o beta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lbeta.c -o lbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c polygamma.c -o polygamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cospi.c -o cospi.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_i.c -o bessel_i.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_j.c -o bessel_j.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_k.c -o bessel_k.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_y.c -o bessel_y.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c choose.c -o choose.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c snorm.c -o snorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sexp.c -o sexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dgamma.c -o dgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pgamma.c -o pgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qgamma.c -o qgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rgamma.c -o rgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dbeta.c -o dbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pbeta.c -o pbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qbeta.c -o qbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rbeta.c -o rbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dunif.c -o dunif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c punif.c -o punif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qunif.c -o qunif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c runif.c -o runif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnorm.c -o dnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnorm.c -o pnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnorm.c -o qnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnorm.c -o rnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dlnorm.c -o dlnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plnorm.c -o plnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qlnorm.c -o qlnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rlnorm.c -o rlnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c df.c -o df.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pf.c -o pf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qf.c -o qf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rf.c -o rf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnf.c -o dnf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dt.c -o dt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pt.c -o pt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qt.c -o qt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rt.c -o rt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnt.c -o dnt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dchisq.c -o dchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pchisq.c -o pchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qchisq.c -o qchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rchisq.c -o rchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnchisq.c -o rnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dbinom.c -o dbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pbinom.c -o pbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qbinom.c -o qbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rbinom.c -o rbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rmultinom.c -o rmultinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dcauchy.c -o dcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pcauchy.c -o pcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qcauchy.c -o qcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rcauchy.c -o rcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dexp.c -o dexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pexp.c -o pexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qexp.c -o qexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rexp.c -o rexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dgeom.c -o dgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pgeom.c -o pgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qgeom.c -o qgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rgeom.c -o rgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dhyper.c -o dhyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c phyper.c -o phyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qhyper.c -o qhyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rhyper.c -o rhyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnbinom.c -o dnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnbinom.c -o pnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbinom.c -o qnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbinom_mu.c -o qnbinom_mu.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnbinom.c -o rnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dpois.c -o dpois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ppois.c -o ppois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qpois.c -o qpois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rpois.c -o rpois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dweibull.c -o dweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pweibull.c -o pweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qweibull.c -o qweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rweibull.c -o rweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dlogis.c -o dlogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plogis.c -o plogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qlogis.c -o qlogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rlogis.c -o rlogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnchisq.c -o dnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnchisq.c -o pnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnchisq.c -o qnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnbeta.c -o dnbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnbeta.c -o pnbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbeta.c -o qnbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnf.c -o pnf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnt.c -o pnt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnf.c -o qnf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnt.c -o qnt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ptukey.c -o ptukey.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qtukey.c -o qtukey.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c toms708.c -o toms708.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c wilcox.c -o wilcox.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c signrank.c -o signrank.o ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o ranlib libnmath.a make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/nmath' make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/nmath' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/unix' config.status: creating src/unix/Makefile making Rembedded.d from Rembedded.c making dynload.d from dynload.c making system.d from system.c making sys-unix.d from sys-unix.c making sys-std.d from sys-std.c making X11.d from X11.c make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Rembedded.c -o Rembedded.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dynload.c -o dynload.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c system.c -o system.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sys-unix.c -o sys-unix.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sys-std.c -o sys-std.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c X11.c -o X11.o ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o ranlib libunix.a make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/unix' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -DR_HOME='"/builddir/build/BUILD/R-4.5.2"' \ -o Rscript ./Rscript.c make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/unix' make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/unix' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/main' config.status: creating src/main/Makefile making CommandLineArgs.d from CommandLineArgs.c making Rdynload.d from Rdynload.c making Renviron.d from Renviron.c making RNG.d from RNG.c making agrep.d from agrep.c making altclasses.d from altclasses.c making altrep.d from altrep.c making apply.d from apply.c making arithmetic.d from arithmetic.c making array.d from array.c making attrib.d from attrib.c making bind.d from bind.c making builtin.d from builtin.c making character.d from character.c making clippath.d from clippath.c making coerce.d from coerce.c making colors.d from colors.c making complex.d from complex.c making connections.d from connections.c making context.d from context.c making cum.d from cum.c making dcf.d from dcf.c making datetime.d from datetime.c making debug.d from debug.c making deparse.d from deparse.c making devices.d from devices.c making dotcode.d from dotcode.c making dounzip.d from dounzip.c making dstruct.d from dstruct.c making duplicate.d from duplicate.c making edit.d from edit.c making engine.d from engine.c making envir.d from envir.c making errors.d from errors.c making eval.d from eval.c making flexiblas.d from flexiblas.c making format.d from format.c making gevents.d from gevents.c making gram.d from gram.c making gram-ex.d from gram-ex.c making graphics.d from graphics.c making grep.d from grep.c making identical.d from identical.c making inlined.d from inlined.c making inspect.d from inspect.c making internet.d from internet.c making iosupport.d from iosupport.c making lapack.d from lapack.c making list.d from list.c making localecharset.d from localecharset.c making logic.d from logic.c making machine.d from machine.c making main.d from main.c making mapply.d from mapply.c making mask.d from mask.c making match.d from match.c making memory.d from memory.c making names.d from names.c making objects.d from objects.c making options.d from options.c making paste.d from paste.c making patterns.d from patterns.c making platform.d from platform.c making plot.d from plot.c making plot3d.d from plot3d.c making plotmath.d from plotmath.c making print.d from print.c making printarray.d from printarray.c making printvector.d from printvector.c making printutils.d from printutils.c making qsort.d from qsort.c making radixsort.d from radixsort.c making random.d from random.c making raw.d from raw.c making registration.d from registration.c making relop.d from relop.c making rlocale.d from rlocale.c making saveload.d from saveload.c making scan.d from scan.c making seq.d from seq.c making serialize.d from serialize.c making sort.d from sort.c making source.d from source.c making split.d from split.c making sprintf.d from sprintf.c making startup.d from startup.c making subassign.d from subassign.c making subscript.d from subscript.c making subset.d from subset.c making summary.d from summary.c making sysutils.d from sysutils.c making times.d from times.c making unique.d from unique.c making util.d from util.c making version.d from version.c making g_alab_her.d from g_alab_her.c making g_cntrlify.d from g_cntrlify.c making g_fontdb.d from g_fontdb.c making g_her_glyph.d from g_her_glyph.c making Rmain.d from Rmain.c making alloca.d from alloca.c making mkdtemp.d from mkdtemp.c making strdup.d from strdup.c making strncasecmp.d from strncasecmp.c make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/main' gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c CommandLineArgs.c -o CommandLineArgs.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Rdynload.c -o Rdynload.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Renviron.c -o Renviron.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c RNG.c -o RNG.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c agrep.c -o agrep.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c altclasses.c -o altclasses.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c altrep.c -o altrep.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c apply.c -o apply.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c arithmetic.c -o arithmetic.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c array.c -o array.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c attrib.c -o attrib.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bind.c -o bind.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c builtin.c -o builtin.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c character.c -o character.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c clippath.c -o clippath.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coerce.c -o coerce.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c colors.c -o colors.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c complex.c -o complex.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c connections.c -o connections.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c context.c -o context.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cum.c -o cum.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dcf.c -o dcf.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c datetime.c -o datetime.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c debug.c -o debug.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c deparse.c -o deparse.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c devices.c -o devices.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dotcode.c -o dotcode.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dounzip.c -o dounzip.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dstruct.c -o dstruct.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c duplicate.c -o duplicate.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c edit.c -o edit.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c engine.c -o engine.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c envir.c -o envir.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c errors.c -o errors.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c eval.c -o eval.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c flexiblas.c -o flexiblas.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c format.c -o format.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gevents.c -o gevents.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gram.c -o gram.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gram-ex.c -o gram-ex.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c graphics.c -o graphics.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c grep.c -o grep.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c identical.c -o identical.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c inlined.c -o inlined.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c inspect.c -o inspect.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c internet.c -o internet.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c iosupport.c -o iosupport.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lapack.c -o lapack.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c list.c -o list.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c localecharset.c -o localecharset.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c logic.c -o logic.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c machine.c -o machine.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c main.c -o main.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mapply.c -o mapply.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mask.c -o mask.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c match.c -o match.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c memory.c -o memory.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c names.c -o names.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c objects.c -o objects.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c options.c -o options.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c paste.c -o paste.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c patterns.c -o patterns.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c platform.c -o platform.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plot.c -o plot.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plot3d.c -o plot3d.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plotmath.c -o plotmath.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c print.c -o print.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c printarray.c -o printarray.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c printvector.c -o printvector.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c printutils.c -o printutils.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qsort.c -o qsort.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c radixsort.c -o radixsort.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c random.c -o random.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c raw.c -o raw.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c registration.c -o registration.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c relop.c -o relop.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rlocale.c -o rlocale.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c saveload.c -o saveload.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c scan.c -o scan.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c seq.c -o seq.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c serialize.c -o serialize.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sort.c -o sort.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c source.c -o source.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c split.c -o split.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sprintf.c -o sprintf.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c startup.c -o startup.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c subassign.c -o subassign.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c subscript.c -o subscript.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c subset.c -o subset.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c summary.c -o summary.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sysutils.c -o sysutils.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c times.c -o times.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c unique.c -o unique.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util.c -o util.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c version.c -o version.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c g_alab_her.c -o g_alab_her.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c g_cntrlify.c -o g_cntrlify.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c g_fontdb.c -o g_fontdb.o gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c g_her_glyph.c -o g_her_glyph.o gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c xxxpr.f -o xxxpr.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gcc -shared -fopenmp -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o clippath.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o flexiblas.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o machine.o main.o mapply.o mask.o match.o memory.o names.o objects.o options.o paste.o patterns.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` -lflexiblas -lgfortran -lm -lquadmath -lreadline -ltre -lpcre2-8 -ldeflate -lzstd -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n lto-wrapper: warning: using serial compilation of 56 LTRANS jobs make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/main' mkdir -p -- /builddir/build/BUILD/R-4.5.2/bin/exec mkdir -p -- /builddir/build/BUILD/R-4.5.2/lib make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/main' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/main' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/main' gcc -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Rmain.c -o Rmain.o gcc -Wl,--export-dynamic -fopenmp -L"../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o R.bin Rmain.o -lR make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/main' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/main' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/main' make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/main' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/modules' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/modules/internet' making Rhttpd.d from Rhttpd.c making Rsock.d from Rsock.c making internet.d from internet.c making libcurl.d from libcurl.c making sock.d from sock.c making sockconn.d from sockconn.c make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -c Rsock.c -o Rsock.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -c internet.c -o internet.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -c libcurl.c -o libcurl.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -c sock.c -o sock.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -c sockconn.c -o sockconn.o gcc -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o sock.o sockconn.o -lcurl -lR make[5]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/modules/internet' mkdir -p -- /builddir/build/BUILD/R-4.5.2/modules make[5]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/modules/internet' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/modules/internet' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/modules/internet' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/modules/lapack' making Lapack.d from Lapack.c make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/modules/lapack' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Lapack.c -o Lapack.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ../../main/flexiblas.c -o flexiblas.o gcc -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o lapack.so Lapack.o flexiblas.o -lR -lflexiblas -lgfortran -lm -lquadmath make[5]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/modules/lapack' make[5]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/modules/lapack' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/modules/lapack' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/modules/lapack' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/modules/X11' making devX11.d from devX11.c making rotated.d from rotated.c making rbitmap.d from rbitmap.c make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/modules/X11' gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c devX11.c -o devX11.o gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rotated.c -o rotated.o gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rbitmap.c -o rbitmap.o gcc -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff -ljpeg -lpng16 -lz -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lXmu -lR -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dataentry.c -o dataentry.o gcc -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lXmu -lR -lm make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/modules/X11' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/modules/X11' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/modules/X11' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/modules/X11' make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/modules' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library' mkdir -p -- ../../library make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/profile' building system startup profile mkdir -p -- ../../../library/base/R make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/profile' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/translations' building package 'translations' mkdir -p -- ../../../library/translations make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/translations' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/translations' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/translations' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/base' building package 'base' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/base' mkdir -p -- ../../../library/base/demo make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/base' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/base' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/tools' building package 'tools' mkdir -p -- ../../../library/tools make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/tools' mkdir -p -- ../../../library/tools/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/tools' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/tools' make[5]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/tools/src' making text.d from text.c making init.d from init.c making Rmd5.d from Rmd5.c making md5.d from md5.c making signals.d from signals.c making install.d from install.c making getfmts.d from getfmts.c making http.d from http.c making gramLatex.d from gramLatex.c making gramRd.d from gramRd.c making pdscan.d from pdscan.c making Rsha256.d from Rsha256.c making sha256.d from sha256.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c text.c -o text.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Rmd5.c -o Rmd5.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c md5.c -o md5.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c signals.c -o signals.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c install.c -o install.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c getfmts.c -o getfmts.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c http.c -o http.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gramLatex.c -o gramLatex.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gramRd.c -o gramRd.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pdscan.c -o pdscan.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Rsha256.c -o Rsha256.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sha256.c -o sha256.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o pdscan.o Rsha256.o sha256.o -L../../../../lib -lR lto-wrapper: warning: using serial compilation of 2 LTRANS jobs make[6]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/tools/src' mkdir -p -- ../../../../library/tools/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/tools/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/tools/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/tools' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/tools' installing 'sysdata.rda' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/tools' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/tools' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/compiler' building package 'compiler' mkdir -p -- ../../../library/compiler make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/compiler' mkdir -p -- ../../../library/compiler/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/compiler' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/compiler' byte-compiling package 'compiler' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/compiler' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/compiler' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/base' byte-compiling package 'base' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/base' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/tools' byte-compiling package 'tools' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/tools' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/utils' building package 'utils' mkdir -p -- ../../../library/utils mkdir -p -- ../../../library/utils/doc make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/utils' mkdir -p -- ../../../library/utils/R mkdir -p -- ../../../library/utils/Sweave mkdir -p -- ../../../library/utils/misc make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/utils' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/utils' make[5]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/utils/src' making init.d from init.c making io.d from io.c making size.d from size.c making sock.d from sock.c making stubs.d from stubs.c making utils.d from utils.c making hashtab.d from hashtab.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c io.c -o io.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c size.c -o size.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sock.c -o sock.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c stubs.c -o stubs.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c utils.c -o utils.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c hashtab.c -o hashtab.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o utils.so init.o io.o size.o sock.o stubs.o utils.o hashtab.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/utils/src' mkdir -p -- ../../../../library/utils/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/utils/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/utils/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/utils' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/utils' installing 'sysdata.rda' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/utils' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/utils' byte-compiling package 'utils' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/utils' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/utils' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/grDevices' building package 'grDevices' mkdir -p -- ../../../library/grDevices make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/grDevices' mkdir -p -- ../../../library/grDevices/R mkdir -p -- ../../../library/grDevices/afm mkdir -p -- ../../../library/grDevices/enc mkdir -p -- ../../../library/grDevices/fonts/Roboto mkdir -p -- ../../../library/grDevices/fonts/Montserrat/static mkdir -p -- ../../../library/grDevices/icc make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/grDevices' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/grDevices' make[5]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/grDevices/src' making axis_scales.d from axis_scales.c making chull.d from chull.c making devices.d from devices.c making init.d from init.c making stubs.d from stubs.c making colors.d from colors.c making clippath.d from clippath.c making patterns.d from patterns.c making mask.d from mask.c making group.d from group.c making devCairo.d from devCairo.c making devPicTeX.d from devPicTeX.c making devPS.d from devPS.c making devQuartz.d from devQuartz.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c axis_scales.c -o axis_scales.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c chull.c -o chull.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c devices.c -o devices.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c stubs.c -o stubs.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c colors.c -o colors.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c clippath.c -o clippath.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c patterns.c -o patterns.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mask.c -o mask.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c group.c -o group.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c devCairo.c -o devCairo.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c devPicTeX.c -o devPicTeX.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c devPS.c -o devPS.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c devQuartz.c -o devQuartz.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o clippath.o patterns.o mask.o group.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR lto-wrapper: warning: using serial compilation of 3 LTRANS jobs make[6]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/grDevices/src' mkdir -p -- ../../../../library/grDevices/libs make[7]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/grDevices/src/cairo' making cairoBM.d from cairoBM.c make[8]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/grDevices/src/cairo' make[9]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/grDevices/src/cairo' gcc -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../../../src/modules/X11 -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cairoBM.c -o cairoBM.o gcc -shared -L"../../../../../lib" -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff -ljpeg -lpng16 -lz -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -L"../../../../../lib" -lR -lm make[9]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/grDevices/src/cairo' make[8]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/grDevices/src/cairo' make[7]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/grDevices/src/cairo' make[6]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/grDevices/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/grDevices/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/grDevices' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/grDevices' byte-compiling package 'grDevices' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/grDevices' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/grDevices' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/graphics' building package 'graphics' mkdir -p -- ../../../library/graphics make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/graphics' mkdir -p -- ../../../library/graphics/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/graphics' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/graphics' make[5]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/graphics/src' making init.d from init.c making base.d from base.c making graphics.d from graphics.c making par.d from par.c making plot.d from plot.c making plot3d.d from plot3d.c making stem.d from stem.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c base.c -o base.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c graphics.c -o graphics.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c par.c -o par.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plot.c -o plot.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plot3d.c -o plot3d.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c stem.c -o stem.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR lto-wrapper: warning: using serial compilation of 6 LTRANS jobs make[6]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/graphics/src' mkdir -p -- ../../../../library/graphics/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/graphics/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/graphics/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/graphics' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/graphics' byte-compiling package 'graphics' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/graphics' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/graphics' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/stats' building package 'stats' mkdir -p -- ../../../library/stats mkdir -p -- ../../../library/stats/doc make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/stats' mkdir -p -- ../../../library/stats/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/stats' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/stats' make[5]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/stats/src' making init.d from init.c making kmeans.d from kmeans.c making ansari.d from ansari.c making bandwidths.d from bandwidths.c making chisqsim.d from chisqsim.c making d2x2xk.d from d2x2xk.c making fexact.d from fexact.c making kendall.d from kendall.c making ks.d from ks.c making line.d from line.c making smooth.d from smooth.c making prho.d from prho.c making swilk.d from swilk.c making ksmooth.d from ksmooth.c making loessc.d from loessc.c making monoSpl.d from monoSpl.c making isoreg.d from isoreg.c making Srunmed.d from Srunmed.c making dblcen.d from dblcen.c making distance.d from distance.c making hclust-utils.d from hclust-utils.c making nls.d from nls.c making rWishart.d from rWishart.c making HoltWinters.d from HoltWinters.c making PPsum.d from PPsum.c making arima.d from arima.c making burg.d from burg.c making filter.d from filter.c making mAR.d from mAR.c making pacf.d from pacf.c making starma.d from starma.c making port.d from port.c making family.d from family.c making sbart.d from sbart.c making approx.d from approx.c making loglin.d from loglin.c making lowess.d from lowess.c making massdist.d from massdist.c making splines.d from splines.c making lm.d from lm.c making complete_cases.d from complete_cases.c making cov.d from cov.c making deriv.d from deriv.c making fft.d from fft.c making fourier.d from fourier.c making model.d from model.c making optim.d from optim.c making optimize.d from optimize.c making integrate.d from integrate.c making random.d from random.c making distn.d from distn.c making zeroin.d from zeroin.c making rcont.d from rcont.c making influence.d from influence.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c kmeans.c -o kmeans.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ansari.c -o ansari.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bandwidths.c -o bandwidths.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c chisqsim.c -o chisqsim.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c d2x2xk.c -o d2x2xk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fexact.c -o fexact.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c kendall.c -o kendall.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ks.c -o ks.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c line.c -o line.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c smooth.c -o smooth.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c prho.c -o prho.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c swilk.c -o swilk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ksmooth.c -o ksmooth.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c loessc.c -o loessc.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c monoSpl.c -o monoSpl.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c isoreg.c -o isoreg.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Srunmed.c -o Srunmed.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dblcen.c -o dblcen.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c distance.c -o distance.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c hclust-utils.c -o hclust-utils.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c nls.c -o nls.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rWishart.c -o rWishart.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c HoltWinters.c -o HoltWinters.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c PPsum.c -o PPsum.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c arima.c -o arima.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c burg.c -o burg.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c filter.c -o filter.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mAR.c -o mAR.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pacf.c -o pacf.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c starma.c -o starma.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c port.c -o port.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c family.c -o family.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sbart.c -o sbart.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c approx.c -o approx.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c loglin.c -o loglin.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lowess.c -o lowess.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c massdist.c -o massdist.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c splines.c -o splines.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lm.c -o lm.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c complete_cases.c -o complete_cases.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cov.c -o cov.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c deriv.c -o deriv.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fft.c -o fft.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fourier.c -o fourier.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c model.c -o model.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c optim.c -o optim.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c optimize.c -o optimize.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c integrate.c -o integrate.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c random.c -o random.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c distn.c -o distn.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c zeroin.c -o zeroin.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rcont.c -o rcont.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c influence.c -o influence.o gfortran -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c bsplvd.f -o bsplvd.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c bvalue.f -o bvalue.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c bvalus.f -o bvalus.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c loessf.f -o loessf.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c ppr.f -o ppr.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c qsbart.f -o qsbart.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c sgram.f -o sgram.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c sinerp.f -o sinerp.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c sslvrg.f -o sslvrg.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c stxwx.f -o stxwx.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c hclust.f -o hclust.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c kmns.f -o kmns.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c eureka.f -o eureka.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c stl.f -o stl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -msse2 -mfpmath=sse -c portsrc.f -o portsrc.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran portsrc.f: In function 'i7do_': portsrc.f:6663:72: warning: 'ncomp' may be used uninitialized in this function [-Wmaybe-uninitialized] 6663 | NCOMP = NCOMP + 1 | ^ portsrc.f:6648:72: warning: 'jcol' may be used uninitialized in this function [-Wmaybe-uninitialized] 6648 | LIST(JCOL) = NUMORD | ^ portsrc.f: In function 'dl7mst_': portsrc.f:5521:51: warning: 'alphak' may be used uninitialized in this function [-Wmaybe-uninitialized] 5521 | IF (ALPHAK .LE. ZERO .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK) | ^ portsrc.f:5658:18: warning: 'psifac' may be used uninitialized in this function [-Wmaybe-uninitialized] 5658 | IF (ALPHAK .GE. TWOPSI*PSIFAC) GO TO 310 | ^ portsrc.f: In function 'dg7qts_': portsrc.f:10329:55: warning: 'alphak' may be used uninitialized in this function [-Wmaybe-uninitialized] 10329 | IF (-V(DST0) .GE. ALPHAK .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK) | ^ portsrc.f:10412:72: warning: 'gtsta' may be used uninitialized in this function [-Wmaybe-uninitialized] 10412 | V(PREDUC) = HALF * (DABS(ALPHAK)*DST*DST + GTSTA) | ^ portsrc.f:10324:72: warning: 'phi' may be used uninitialized in this function [-Wmaybe-uninitialized] 10324 | LK = DMAX1(LK, PHI*W(PHIPIN)) | ^ portsrc.f:10466:10: warning: 'kamin' may be used uninitialized in this function [-Wmaybe-uninitialized] 10466 | IF (KA .GE. KAMIN) GO TO 340 | ^ portsrc.f: In function 'dd7dgb_': portsrc.f:12243:72: warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized] 12243 | V(NREDUC) = NRED | ^ portsrc.f:12246:72: warning: 'dnwtst' may be used uninitialized in this function [-Wmaybe-uninitialized] 12246 | V(DST0) = DNWTST | ^ portsrc.f: In function 'dg7qsb_': portsrc.f:2515:72: warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized] 2515 | V(NREDUC) = NRED | ^ portsrc.f:2514:72: warning: 'ds0' may be used uninitialized in this function [-Wmaybe-uninitialized] 2514 | 60 V(DST0) = DS0 | ^ portsrc.f: In function 'dl7msb_': portsrc.f:8174:72: warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized] 8174 | V(NREDUC) = NRED | ^ portsrc.f:8173:72: warning: 'ds0' may be used uninitialized in this function [-Wmaybe-uninitialized] 8173 | 90 V(DST0) = DS0 | ^ portsrc.f: In function 'df7hes_': portsrc.f:8652:72: warning: 'hes' may be used uninitialized in this function [-Wmaybe-uninitialized] 8652 | 210 IV(FDH) = HES | ^ portsrc.f: In function 'dparck_': portsrc.f:3587:10: warning: 'miv2' may be used uninitialized in this function [-Wmaybe-uninitialized] 3587 | IF (LIV .LT. MIV2) GO TO 300 | ^ portsrc.f: In function 'drn2gb_': portsrc.f:12079:72: warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized] 12079 | 270 CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X) | ^ portsrc.f: In function 'drn2g_': portsrc.f:458:72: warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized] 458 | 300 CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X) | ^ portsrc.f:366:72: warning: 'rmat1' may be used uninitialized in this function [-Wmaybe-uninitialized] 366 | CALL DL7VML(P, V(G1), V(RMAT1), V(QTR1)) | ^ portsrc.f:366:72: warning: 'qtr1' may be used uninitialized in this function [-Wmaybe-uninitialized] gfortran -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c lminfl.f -o lminfl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -lflexiblas -lgfortran -lm -lquadmath -L../../../../lib -lR lto-wrapper: warning: using serial compilation of 8 LTRANS jobs make[6]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/stats/src' mkdir -p -- ../../../../library/stats/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/stats/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/stats/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/stats' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/stats' byte-compiling package 'stats' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/stats' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/stats' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/datasets' building package 'datasets' mkdir -p -- ../../../library/datasets make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/datasets' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/datasets' mkdir -p -- ../../../library/datasets/data make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/datasets' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/methods' building package 'methods' mkdir -p -- ../../../library/methods make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/methods' mkdir -p -- ../../../library/methods/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/methods' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/methods' make[5]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/methods/src' making do_substitute_direct.d from do_substitute_direct.c making init.d from init.c making methods_list_dispatch.d from methods_list_dispatch.c making slot.d from slot.c making class_support.d from class_support.c making tests.d from tests.c making utils.d from utils.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c do_substitute_direct.c -o do_substitute_direct.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c methods_list_dispatch.c -o methods_list_dispatch.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c slot.c -o slot.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c class_support.c -o class_support.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c tests.c -o tests.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c utils.c -o utils.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/methods/src' mkdir -p -- ../../../../library/methods/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/methods/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/methods/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/methods' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/methods' byte-compiling package 'methods' initializing class and method definitions ... done make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/methods' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/methods' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/grid' building package 'grid' mkdir -p -- ../../../library/grid mkdir -p -- ../../../library/grid/doc make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/grid' mkdir -p -- ../../../library/grid/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/grid' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/grid' make[5]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/grid/src' making clippath.d from clippath.c making gpar.d from gpar.c making grid.d from grid.c making just.d from just.c making layout.d from layout.c making mask.d from mask.c making matrix.d from matrix.c making path.d from path.c making register.d from register.c making state.d from state.c making typeset.d from typeset.c making unit.d from unit.c making util.d from util.c making viewport.d from viewport.c gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c clippath.c -o clippath.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gpar.c -o gpar.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c grid.c -o grid.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c just.c -o just.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c layout.c -o layout.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mask.c -o mask.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c matrix.c -o matrix.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c path.c -o path.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c register.c -o register.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c state.c -o state.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c typeset.c -o typeset.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c unit.c -o unit.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util.c -o util.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c viewport.c -o viewport.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o grid.so clippath.o gpar.o grid.o just.o layout.o mask.o matrix.o path.o register.o state.o typeset.o unit.o util.o viewport.o -L../../../../lib -lR lto-wrapper: warning: using serial compilation of 3 LTRANS jobs make[6]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/grid/src' mkdir -p -- ../../../../library/grid/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/grid/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/grid/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/grid' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/grid' byte-compiling package 'grid' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/grid' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/grid' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/splines' building package 'splines' mkdir -p -- ../../../library/splines make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/splines' mkdir -p -- ../../../library/splines/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/splines' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/splines' make[5]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/splines/src' making splines.d from splines.c gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c splines.c -o splines.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o splines.so splines.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/splines/src' mkdir -p -- ../../../../library/splines/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/splines/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/splines/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/splines' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/splines' byte-compiling package 'splines' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/splines' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/splines' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/stats4' building package 'stats4' mkdir -p -- ../../../library/stats4 make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/stats4' mkdir -p -- ../../../library/stats4/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/stats4' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/stats4' byte-compiling package 'stats4' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/stats4' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/stats4' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/tcltk' building package 'tcltk' mkdir -p -- ../../../library/tcltk/R make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/tcltk' mkdir -p -- ../../../library/tcltk/exec make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/tcltk' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/tcltk/src' making init.d from init.c making tcltk.d from tcltk.c making tcltk_unix.d from tcltk_unix.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c tcltk.c -o tcltk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c tcltk_unix.c -o tcltk_unix.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib64 -ltcl8.6 -L/usr/lib64 -ltk8.6 -lX11 -lm -L../../../../lib -lR make[5]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/tcltk/src' mkdir -p -- ../../../../library/tcltk/libs make[5]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/tcltk/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/tcltk/src' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/tcltk' byte-compiling package 'tcltk' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/tcltk' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/tcltk' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/parallel' building package 'parallel' mkdir -p -- ../../../library/parallel mkdir -p -- ../../../library/parallel/doc make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/parallel' mkdir -p -- ../../../library/parallel/R make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/parallel' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/parallel' make[5]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/parallel/src' making init.d from init.c making rngstream.d from rngstream.c making fork.d from fork.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rngstream.c -o rngstream.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fork.c -o fork.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/parallel/src' mkdir -p -- ../../../../library/parallel/libs make[6]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/parallel/src' make[5]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/parallel/src' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/parallel' make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/parallel' byte-compiling package 'parallel' make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/parallel' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/parallel' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/base' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/base' installing parsed NAMESPACE files make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library' make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src' make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/tests' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/tests' you should 'make docs' now ... make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/doc' creating doc/NEWS creating doc/NEWS.pdf make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/doc/manual' creating doc/manual/R-FAQ.html creating doc/manual/version.texi creating doc/manual/R-admin.html creating doc/manual/R-data.html creating doc/manual/R-exts.html creating doc/manual/R-intro.html creating doc/manual/R-ints.html creating doc/manual/R-lang.html make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/doc/html' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/doc/html' make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/doc' make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library' installing parsed Rd make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library' base stats utils methods graphics grDevices datasets grid tools tcltk splines stats4 compiler parallel make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library' make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library' building/updating package metadata ... make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library' writing package indices make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library' make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library' building all R object docs converting help for package 'base' Arithmetic html AsIs html Bessel html CallExternal html Colon html Comparison html Constants html Control html Cstack_info html DateTimeClasses html Dates html Defunct html Deprecated html Encoding html EnvVar html Extract html Extract.data.frame html Extract.factor html Extremes html Foreign-internal html Foreign html Hyperbolic html ISOdatetime html Internal html InternalMethods html La_library html La_version html Last.value html Log html Logic html LongVectors html MathFun html Memory-limits html Memory html NA html NULL html NumericConstants html Ops.Date html Paren html Platform html Primitive html Quotes html Random-user html Random html RdUtils html Recall html Reserved html Rhome html Round html S3method html Special html StackOverflows html Startup html Syntax html Sys.getenv html Sys.getpid html Sys.glob html Sys.info html Sys.localeconv html Sys.readlink html Sys.setFileTime html Sys.setenv html Sys.sleep html Sys.time html Sys.which html Tailcall html Trig html UTF8filepaths html UseMethod html Vectorize html Version html abbreviate html agrep html all html all.equal html allnames html any html aperm html append html apply html args html array html array2DF html as.Date html as.POSIXlt html as.data.frame html as.environment html as.function html asplit html assign html assignOps html attach html attr html attributes html autoload html backsolve html balancePOSIXlt html base-defunct html REDIRECT:topic Previous alias or file overwritten by alias: ../../library/base/help/Version.html REDIRECT:topic Previous alias or file overwritten by alias: ../../library/base/help/Platform.html base-deprecated html base-internal html base-package html basename html bincode html bindenv html bitwise html body html bquote html browser html browserText html builtins html by html c html call html callCC html capabilities html cat html cbind html char.expand html character html charmatch html chartr html chkDots html chol html chol2inv html chooseOpsMethod html class html col html colSums html colnames html commandArgs html comment html complex html conditions html conflicts html connections html contributors html copyright html crossprod html cumsum html curlGetHeaders html cut.POSIXt html cut html data.class html data.frame html data.matrix html dataframeHelpers html date html dcf html debug html declare html delayedAssign html deparse html deparseOpts html det html detach html dev html diag html diff html difftime html dim html dimnames html do.call html dontCheck html dots html double html dput html drop html droplevels html dump html duplicated html dynload html eapply html eigen html encodeString html environment html eval html exists html expand.grid html expression html extSoftVersion html factor html file.access html file.choose html file.info html file.path html file.show html files html files2 html find.package html findInterval html force html forceAndCall html formals html format html format.info html format.pval html formatDL html formatc html function html funprog html gc html gc.time html gctorture html get html getCallingDLL html getDLLRegisteredRoutines html getLoadedDLLs html getNativeSymbolInfo html gettext html getwd html gl html grep html grepRaw html groupGeneric html grouping html gzcon html hexmode html iconv html icuSetCollate html identical html identity html ifelse html integer html interaction html interactive html invisible html is.finite html is.function html is.language html is.object html is.recursive html is.single html is.unsorted html isS4 html isSymmetric html jitter html kappa html kronecker html l10n_info html labels html lapply html lazyload html length html lengths html levels html libPaths html libcurlVersion html library html library.dynam html license html list html list.files html list2DF html list2env html load html locales html logical html lower.tri html ls html make.names html make.unique html mapply html marginSums html mat.or.vec html match html match.arg html match.call html match.fun html matmult html matrix html maxCol html mean html memCompress html memlimits html memory.profile html merge html message html missing html mode html mtfrm html name html names html nargs html nchar html nlevels html noquote html norm html normalizePath html notyet html nrow html ns-dblcolon html ns-hooks html ns-internal html ns-load html ns-reflect html ns-topenv html numeric html numeric_version html octmode html on.exit html options html order html outer html parse html paste html path.expand html pcre_config html pipeOp html plot html pmatch html polyroot html pos.to.env html pretty html print html print.dataframe html print.default html prmatrix html proc.time html prod html proportions html pushBack html qr html qraux html quit html range html rank html rapply html raw html rawConnection html rawConversion html readBin html readChar html readLines html readRDS html readRenviron html readline html reg.finalizer html regex html regmatches html rep html replace html rev html rle html rm html round.POSIXt html row html row.names html rowsum html sQuote html sample html save html scale html scan html search html seek html seq.Date html seq.POSIXt html seq html sequence html serialize html setTimeLimit html sets html shQuote html showConnections html sign html sink html slice.index html slotOp html socketSelect html solve html sort html sort_by html source html split html sprintf html srcfile html standardGeneric html startsWith html stop html stopifnot html strptime html strrep html strsplit html strtoi html strtrim html structure html strwrap html subset html substitute html substr html sum html summary html svd html sweep html switch html sys.parent html sys.source html system html system.file html system.time html system2 html t html table html tabulate html tapply html taskCallback html taskCallbackManager html taskCallbackNames html tempfile html textconnections html tilde html timezones html toString html trace html traceback html tracemem html transform html trimws html try html typeof html unique html units html unlink html unlist html unname html use html userhooks html utf8Conversion html validUTF8 html vector html warning html warnings html weekday.POSIXt html which html which.min html with html withVisible html write html writeLines html xtfrm html zMachine html zScript html zapsmall html zpackages html zutils html Signals html converting help for package 'tools' CRANtools html HTMLheader html HTMLlinks html QC html R html Rcmd html Rd2HTML html Rd2txt_options html RdTextFilter html Rdiff html Rdindex html Rdutils html SweaveTeXFilter html add_datalist html assertCondition html basetools html bibstyle html buildVignette html buildVignettes html charsets html checkFF html checkMD5sums html checkPoFiles html checkRd html checkRdaFiles html checkTnF html checkVignettes html check_packages_in_dir html codoc html compactPDF html delimMatch html dependsOnPkgs html doitools html encoded html fileutils html find_gs_cmd html getVignetteInfo html licensetools html loadRdMacros html makeLazyLoading html make_translations_pkg html makevars html matchConcordance html md5sum html package_dependencies html package_native_routine_registration_skeleton html parseLatex html parse_Rd html pkg2HTML html print.via.format html pskill html psnice html read.00Index html sha256sum html showNonASCII html startDynamicHelp html testInstalledPackage html texi2dvi html toHTML html toRd html toTitleCase html tools-defunct html tools-deprecated html tools-package html undoc html updatePACKAGES html update_pkg_po html urltools html userdir html vignetteEngine html vignetteInfo html writePACKAGES html xgettext html converting help for package 'utils' BATCH html COMPILE html DLL.version html INSTALL html LINK html PkgUtils html Question html REMOVE html RHOME html RShowDoc html RSiteSearch html Rconsole html Rprof html Rprofmem html Rscript html Rtangle html RweaveLatex html SHLIB html Sweave html SweaveSyntConv html SweaveUtils html URLencode html View html adist html alarm html apropos html aregexec html arrangeWindows html askYesNo html aspell-utils html aspell html available.packages html bibentry html browseEnv html browseURL html browseVignettes html bug.report html capture.output html changedFiles html charClass html choose.dir html choose.files html chooseBioCmirror html chooseCRANmirror html citEntry html citation html cite html clipboard html close.socket html combn html compareVersion html contrib.url html count.fields html create.post html data html dataentry html debugcall html debugger html demo html download.file html download.packages html edit html edit.data.frame html example html file.edit html filetest html findCRANmirror html findLineNum html fix html flush.console html format html getAnywhere html getFromNamespace html getParseData html getS3method html getWindowsHandle html getWindowsHandles html glob2rx html globalVariables html hasName html hashtab html head html help html help.request html help.search html help.start html hsearch-utils html install.packages html installed.packages html isS3method html isS3stdGen html localeToCharset html ls_str html maintainer html make.packages.html html make.socket html memory.size html menu html methods html mirrorAdmin html modifyList html news html nsl html object.size html package.skeleton html packageDescription html packageName html packageStatus html page html person html personList html process.events html prompt html promptData html promptPackage html rcompgen html read.DIF html read.fortran html read.fwf html read.socket html read.table html readRegistry html recover html relist html remove.packages html removeSource html roman html rtags html savehistory html select.list html sessionInfo html setRepositories html setWindowTitle html shortPathName html sourceutils html stack html str html strcapture html summaryRprof html tar html toLatex html txtProgressBar html type.convert html untar html unzip html update.packages html upgrade html url.show html utils-defunct html utils-deprecated html utils-internal html utils-package html vignette html warnErrList html winDialog html winMenus html winProgressBar html winextras html write.table html zip html converting help for package 'grDevices' Devices html Hershey html Japanese html Type1Font html adjustcolor html as.graphicsAnnot html as.raster html axisTicks html boxplot.stats html bringToTop html cairo html cairoSymbolFont html check.options html chull html cm html col2rgb html colorRamp html colors html contourLines html convertColor html densCols html dev html dev.capabilities html dev.capture html dev.flush html dev.interactive html dev.size html dev2 html dev2bitmap html devAskNewPage html embedFonts html extendrange html getGraphicsEvent html glyphInfo html grDevices-defunct html grDevices-internal html grDevices-package html grSoftVersion html gray html gray.colors html hcl html hsv html make.rgb html msgWindow html n2mfrow html nclass html palette html palettes html pdf html pdf.options html pictex html plotmath html postscript html postscriptFonts html pretty.Date html ps.options html quartz html quartzFonts html recordGraphics html recordplot html rgb html rgb2hsv html trans3d html windows html windows.options html windowsFonts html x11 html x11Fonts html xy.coords html xyTable html xyz.coords html png html savePlot html converting help for package 'graphics' abline html arrows html assocplot html axTicks html axis.POSIXct html axis html barplot html box html boxplot html boxplot.matrix html bxp html cdplot html clip html contour html convertXY html coplot html curve html dotchart html filled.contour html fourfoldplot html frame html graphics-defunct html graphics-package html grid html hist.POSIXt html hist html identify html image html layout html legend html lines html locator html matplot html mosaicplot html mtext html pairs html panel.smooth html par html persp html pie html plot.dataframe html plot.default html plot.design html plot.factor html plot.formula html plot.raster html plot.table html plot.window html plot.xy html plothistogram html points html polygon html polypath html rasterImage html rect html rug html screen html segments html smoothScatter html spineplot html stars html stem html stripchart html strwidth html sunflowerplot html symbols html text html title html units html xspline html zAxis html converting help for package 'stats' AIC html ARMAacf html ARMAtoMA html Beta html Binomial html Cauchy html Chisquare html Distributions html Exponential html Fdist html GammaDist html Geometric html HoltWinters html Hypergeometric html IQR html KalmanLike html Logistic html Lognormal html Multinom html NLSstAsymptotic html NLSstClosestX html NLSstLfAsymptote html NLSstRtAsymptote html NegBinomial html Normal html Pair html Poisson html SSD html SSasymp html SSasympOff html SSasympOrig html SSbiexp html SSfol html SSfpl html SSgompertz html SSlogis html SSmicmen html SSweibull html SignRank html Smirnov html StructTS html TDist html Tukey html TukeyHSD html Uniform html Weibull html Wilcoxon html acf html acf2AR html add1 html addmargins html aggregate html alias html anova html anova.glm html anova.lm html anova.mlm html ansari.test html aov html approxfun html ar html ar.ols html arima html arima.sim html arima0 html as.hclust html asOneSidedFormula html ave html bandwidth html bartlett.test html binom.test html biplot html biplot.princomp html birthday html box.test html cancor html case.names html checkMFClasses html chisq.test html cmdscale html coef html complete.cases html confint html constrOptim html contrast html contrasts html convolve html cophenetic html cor html cor.test html cov.wt html cpgram html cutree html decompose html delete.response html dendrapply html dendrogram html density html deriv html deviance html df.residual html diffinv html dist html dummy.coef html ecdf html eff.aovlist html effects html embed html expand.model.frame html extractAIC html factanal html factor.scope html family html fft html filter html fisher.test html fitted.values html fivenum html fligner.test html formula html formula.nls html friedman.test html ftable html ftable.formula html getInitial html glm html glm.control html glm.summaries html hclust html heatmap html identify.hclust html influence.measures html integrate html interaction.plot html is.empty html isoreg html kernapply html kernel html kmeans html kruskal.test html ks.test html ksmooth html lag html lag.plot html line html listof html lm html lm.influence html lm.summaries html lmfit html loadings html loess html loess.control html logLik html loglin html lowess html ls.diag html ls.print html lsfit html mad html mahalanobis html make.link html makepredictcall html manova html mantelhaen.test html mauchly.test html mcnemar.test html median html medpolish html model.extract html model.frame html model.matrix html model.tables html monthplot html mood.test html na.action html na.contiguous html na.fail html nafns html naprint html nextn html nlm html nlminb html nls html nls.control html nobs html numericDeriv html offset html oneway.test html optim html optimize html order.dendrogram html p.adjust html pairwise.prop.test html pairwise.t.test html pairwise.table html pairwise.wilcox.test html plot.HoltWinters html plot.acf html plot.density html plot.isoreg html plot.lm html plot.ppr html plot.profile html plot.profile.nls html plot.spec html plot.stepfun html plot.ts html poisson.test html poly html power html power.anova.test html power.prop.test html power.t.test html pp.test html ppoints html ppr html prcomp html predict.HoltWinters html predict html predict.arima html predict.glm html predict.lm html predict.loess html predict.nls html predict.smooth.spline html preplot html princomp html print.power.htest html print.ts html printCoefmat html profile html profile.glm html profile.nls html proj html prop.test html prop.trend.test html qqnorm html quade.test html quantile html r2dtable html rWishart html read.ftable html rect.hclust html relevel html reorder.dendrogram html reorder.factor html replications html reshape html residuals html runmed html scatter.smooth html screeplot html sd html se.contrast html selfStart html setNames html shapiro.test html sigma html simulate html smooth html smooth.spline html smoothEnds html sortedXyData html spec.ar html spec.pgram html spec.taper html spectrum html splinefun html start html stat.anova html stats-defunct html stats-deprecated html stats-package html step html stepfun html stl html stlmethods html summary.aov html summary.glm html summary.lm html summary.manova html summary.nls html summary.princomp html supsmu html symnum html t.test html termplot html terms html terms.formula html terms.object html time html toeplitz html ts-methods html ts html ts.plot html ts.union html tsSmooth html tsdiag html tsp html uniroot html update html update.formula html var.test html varimax html vcov html weighted.mean html weighted.residuals html weights html wilcox.test html window html xtabs html zC html converting help for package 'datasets' AirPassengers html BJsales html BOD html ChickWeight html DNase html EuStockMarkets html Formaldehyde html HairEyeColor html Harman23.cor html Harman74.cor html Indometh html InsectSprays html JohnsonJohnson html LakeHuron html LifeCycleSavings html Loblolly html Nile html Orange html OrchardSprays html PlantGrowth html Puromycin html Theoph html Titanic html ToothGrowth html UCBAdmissions html UKDriverDeaths html UKLungDeaths html UKgas html USAccDeaths html USArrests html USJudgeRatings html USPersonalExpenditure html VADeaths html WWWusage html WorldPhones html ability.cov html airmiles html airquality html anscombe html attenu html attitude html austres html beavers html cars html chickwts html co2 html crimtab html datasets-package html discoveries html esoph html euro html eurodist html faithful html freeny html gait html infert html iris html islands html lh html longley html lynx html morley html mtcars html nhtemp html nottem html npk html occupationalStatus html penguins html precip html presidents html pressure html quakes html randu html rivers html rock html sleep html stackloss html state html sunspot.month html sunspot.year html sunspots html swiss html treering html trees html uspop html volcano html warpbreaks html women html zCO2 html converting help for package 'methods' BasicClasses html Classes html Classes_Details html Documentation html EmptyMethodsList-class html EnvironmentClass html GenericFunctions html Introduction html LanguageClasses html LinearMethodsList-class html MethodDefinition-class html MethodSupport html MethodWithNext-class html Methods html Methods_Details html Methods_for_Nongenerics html Methods_for_S3 html NextMethod html ObjectsWithPackage-class html RClassUtils html RMethodUtils html S3Part html S4groupGeneric html SClassExtension-class html StructureClasses html TraceClasses html as html callGeneric html canCoerce html cbind2 html className html classRepresentation-class html classesToAM html dotsMethods html evalSource html findClass html findMethods html fixPrevious html genericFunction-class html getClass html getMethod html getPackageName html hasArg html implicitGeneric html inheritedSlotNames html initialize-methods html is html isSealedMethod html languageEl html loadMethod html localRefClass html method.skeleton html methodUtilities html methods-defunct html methods-deprecated html methods-package html new html nonStructure-class html promptClass html promptMethods html refClass html removeMethod html representation html selectSuperClasses html setAs html setClass html setClassUnion html setGeneric html setGroupGeneric html setIs html setLoadActions html setMethod html setOldClass html setSClass html show html showMethods html signature-class html slot html stdRefClass html substituteDirect html testInheritedMethods html validObject html zBasicFunsList html converting help for package 'grid' Grid html absolute.size html arrow html as.mask html calcStringMetric html current.viewport html dataViewport html depth html deviceLoc html drawDetails html editDetails html editViewport html explode html gEdit html gPath html getNames html gpar html grid-defunct html grid-internal html grid-package html grid.DLapply html grid.add html grid.bezier html grid.cap html grid.circle html grid.clip html grid.convert html grid.copy html grid.curve html grid.delay html grid.display.list html grid.draw html grid.edit html grid.force html grid.frame html grid.function html grid.get html grid.glyph html grid.grab html grid.grep html grid.grill html grid.grob html grid.group html grid.layout html grid.lines html grid.locator html grid.ls html grid.move.to html grid.newpage html grid.null html grid.pack html grid.path html grid.place html grid.plot.and.legend html grid.points html grid.polygon html grid.pretty html grid.raster html grid.record html grid.rect html grid.refresh html grid.remove html grid.reorder html grid.roundrect html grid.segments html grid.set html grid.show.layout html grid.show.viewport html grid.stroke html grid.text html grid.xaxis html grid.xspline html grid.yaxis html gridCoords html grobCoords html grobName html grobWidth html grobX html legendGrob html makeContent html patterns html plotViewport html resolveRasterSize html showGrob html showViewport html stringWidth html unit html unit.c html unit.length html unit.pmin html unit.rep html unitType html valid.just html validDetails html viewport html viewportTransform html viewports html vpPath html widthDetails html xDetails html xsplinePoints html converting help for package 'splines' asVector html backSpline html bs html interpSpline html ns html periodicSpline html polySpline html predict.bSpline html predict.bs html splineDesign html splineKnots html splineOrder html splines-package html xyVector html converting help for package 'stats4' coef-methods html confint-methods html logLik-methods html mle-class html mle html plot-methods html profile-methods html profile.mle-class html show-methods html stats4-package html summary-methods html summary.mle-class html update-methods html vcov-methods html converting help for package 'tcltk' TclInterface html TkCommands html TkWidgetcmds html TkWidgets html tclServiceMode html tcltk-defunct html tcltk-package html tkProgressBar html tkStartGUI html tk_choose.dir html tk_choose.files html tk_messageBox html tk_select.list html tkpager html converting help for package 'compiler' compile html converting help for package 'parallel' RngStream html clusterApply html detectCores html makeCluster html parallel-package html sendData html splitIndices html children html mcaffinity html mcfork html mclapply html mcparallel html pvec html make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library' make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library' make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/Recommended' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library/Recommended' begin installing recommended package MASS * installing *source* package 'MASS' ... ** this is package 'MASS' version '7.3-65' ** package 'MASS' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (GCC) 11.5.0 20240719 (Red Hat 11.5.0-14)' make[3]: Entering directory '/tmp/RtmpaI1DZO/R.INSTALL453e1a7af902/MASS/src' gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c MASS.c -o MASS.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lqs.c -o lqs.o gcc -shared -L/builddir/build/BUILD/R-4.5.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o MASS.so MASS.o lqs.o -L/builddir/build/BUILD/R-4.5.2/lib -lR make[3]: Leaving directory '/tmp/RtmpaI1DZO/R.INSTALL453e1a7af902/MASS/src' installing to /builddir/build/BUILD/R-4.5.2/library/MASS/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'MASS' finding HTML links ... done Aids2 html Animals html Boston html Cars93 html Cushings html DDT html GAGurine html Insurance html MASS-internal html Melanoma html Null html OME html Pima.tr html Rabbit html Rubber html SP500 html Sitka html Sitka89 html Skye html Traffic html UScereal html UScrime html VA html abbey html accdeaths html addterm html anorexia html anova.negbin html area html bacteria html bandwidth.nrd html bcv html beav1 html beav2 html biopsy html birthwt html boxcox html cabbages html caith html cats html cement html chem html con2tr html confint html contr.sdif html coop html corresp html cov.rob html cov.trob html cpus html crabs html deaths html denumerate html dose.p html drivers html dropterm html eagles html epil html eqscplot html farms html fgl html fitdistr html forbes html fractions html galaxies html gamma.dispersion html gamma.shape.glm html gehan html genotype html geyser html gilgais html ginv html glm.convert html glm.nb html glmmPQL html hills html hist.scott html housing html huber html hubers html immer html isoMDS html kde2d html lda html ldahist html leuk html lm.gls html lm.ridge html loglm html loglm1 html logtrans html lqs html mammals html mca html mcycle html menarche html michelson html minn38 html motors html muscle html mvrnorm html negative.binomial html newcomb html nlschools html npk html npr1 html oats html painters html pairs.lda html parcoord html petrol html phones html plot.lda html plot.mca html polr html predict.glmmPQL html predict.lda html predict.lqs html predict.mca html predict.qda html profile.glm html qda html quine html rational html renumerate html rlm html rms.curv html rnegbin html road html rotifer html sammon html ships html shoes html shrimp html shuttle html snails html stdres html steam html stepAIC html stormer html studres html summary.loglm html summary.negbin html summary.rlm html survey html synth.tr html theta.md html topo html truehist html ucv html waders html whiteside html width.SJ html write.matrix html wtloss html ** building package indices ** testing if installed package can be loaded * DONE (MASS) Making 'packages.html' ... done begin installing recommended package lattice * installing *source* package 'lattice' ... ** this is package 'lattice' version '0.22-7' ** package 'lattice' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (GCC) 11.5.0 20240719 (Red Hat 11.5.0-14)' make[3]: Entering directory '/tmp/Rtmpi1zbsU/R.INSTALL457546449f88/lattice/src' gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c threeDplot.c -o threeDplot.o gcc -shared -L/builddir/build/BUILD/R-4.5.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o lattice.so init.o threeDplot.o -L/builddir/build/BUILD/R-4.5.2/lib -lR make[3]: Leaving directory '/tmp/Rtmpi1zbsU/R.INSTALL457546449f88/lattice/src' installing to /builddir/build/BUILD/R-4.5.2/library/lattice/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'lattice' finding HTML links ... done Lattice html Rows html USMortality html axis.default html banking html barchart.table html barley html cloud html draw.colorkey html draw.key html environmental html ethanol html histogram html interaction html lattice.options html latticeParseFormula html level.colors html levelplot html llines html lset html make.groups html melanoma html oneway html packet.panel.default html panel.axis html panel.barchart html panel.bwplot html panel.cloud html panel.densityplot html panel.dotplot html panel.functions html panel.histogram html panel.levelplot html panel.loess html panel.number html panel.pairs html panel.parallel html panel.qqmath html panel.qqmathline html panel.smoothScatter html panel.spline html panel.stripplot html panel.superpose html panel.violin html panel.xyplot html prepanel.default html prepanel.functions html print.trellis html qq html qqmath html rfs html shingles html simpleKey html simpleTheme html singer html splom html standard.theme html strip.default html tmd html trellis.device html trellis.object html trellis.par.get html update.trellis html utilities.3d html xyplot html xyplot.ts html ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (lattice) Making 'packages.html' ... done begin installing recommended package Matrix * installing *source* package 'Matrix' ... ** this is package 'Matrix' version '1.7-4' ** package 'Matrix' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (GCC) 11.5.0 20240719 (Red Hat 11.5.0-14)' make[3]: Entering directory '/tmp/Rtmp3bsSDE/R.INSTALL45ac5ce250fd/Matrix/src' gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Csparse.c -o Csparse.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c attrib.c -o attrib.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bind.c -o bind.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cholmod-common.c -o cholmod-common.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cholmod-etc.c -o cholmod-etc.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coerce.c -o coerce.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cs-etc.c -o cs-etc.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dense.c -o dense.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c determinant.c -o determinant.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c expm.c -o expm.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c factor.c -o factor.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c idz.c -o idz.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c kappa.c -o kappa.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c matmult.c -o matmult.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c objects.c -o objects.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c perm.c -o perm.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c solve.c -o solve.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sparse.c -o sparse.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c subassign.c -o subassign.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c subscript.c -o subscript.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c utils-R.c -o utils-R.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c utils.c -o utils.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c validity.c -o validity.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c vector.c -o vector.o cd SuiteSparse/CHOLMOD && make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/builddir/build/BUILD/R-4.5.2/include\" -I\"/builddir/build/BUILD/R-4.5.2/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" make[4]: Entering directory '/tmp/Rtmp3bsSDE/R.INSTALL45ac5ce250fd/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Check/cholmod_check.c -o Check/cholmod_check.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Check/cholmod_l_check.c -o Check/cholmod_l_check.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Check/cholmod_read.c -o Check/cholmod_read.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Check/cholmod_l_read.c -o Check/cholmod_l_read.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Check/cholmod_write.c -o Check/cholmod_write.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Check/cholmod_l_write.c -o Check/cholmod_l_write.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_amd.c -o Cholesky/cholmod_amd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_l_amd.c -o Cholesky/cholmod_l_amd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_analyze.c -o Cholesky/cholmod_analyze.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_l_analyze.c -o Cholesky/cholmod_l_analyze.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_colamd.c -o Cholesky/cholmod_colamd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_l_colamd.c -o Cholesky/cholmod_l_colamd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_etree.c -o Cholesky/cholmod_etree.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_l_etree.c -o Cholesky/cholmod_l_etree.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_factorize.c -o Cholesky/cholmod_factorize.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_l_factorize.c -o Cholesky/cholmod_l_factorize.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_postorder.c -o Cholesky/cholmod_postorder.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_l_postorder.c -o Cholesky/cholmod_l_postorder.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_rcond.c -o Cholesky/cholmod_rcond.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_l_rcond.c -o Cholesky/cholmod_l_rcond.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_resymbol.c -o Cholesky/cholmod_resymbol.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_l_resymbol.c -o Cholesky/cholmod_l_resymbol.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_rowcolcounts.c -o Cholesky/cholmod_rowcolcounts.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_l_rowcolcounts.c -o Cholesky/cholmod_l_rowcolcounts.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_rowfac.c -o Cholesky/cholmod_rowfac.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_l_rowfac.c -o Cholesky/cholmod_l_rowfac.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_solve.c -o Cholesky/cholmod_solve.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_l_solve.c -o Cholesky/cholmod_l_solve.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_spsolve.c -o Cholesky/cholmod_spsolve.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Cholesky/cholmod_l_spsolve.c -o Cholesky/cholmod_l_spsolve.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_aat.c -o Utility/cholmod_aat.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_aat.c -o Utility/cholmod_l_aat.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_add.c -o Utility/cholmod_add.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_add.c -o Utility/cholmod_l_add.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_add_size_t.c -o Utility/cholmod_add_size_t.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_add_size_t.c -o Utility/cholmod_l_add_size_t.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_alloc_factor.c -o Utility/cholmod_alloc_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_alloc_factor.c -o Utility/cholmod_l_alloc_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_alloc_work.c -o Utility/cholmod_alloc_work.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_alloc_work.c -o Utility/cholmod_l_alloc_work.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_allocate_dense.c -o Utility/cholmod_allocate_dense.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_allocate_dense.c -o Utility/cholmod_l_allocate_dense.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_allocate_factor.c -o Utility/cholmod_allocate_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_allocate_factor.c -o Utility/cholmod_l_allocate_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_allocate_sparse.c -o Utility/cholmod_allocate_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_allocate_sparse.c -o Utility/cholmod_l_allocate_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_allocate_triplet.c -o Utility/cholmod_allocate_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_allocate_triplet.c -o Utility/cholmod_l_allocate_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_allocate_work.c -o Utility/cholmod_allocate_work.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_allocate_work.c -o Utility/cholmod_l_allocate_work.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_band.c -o Utility/cholmod_band.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_band.c -o Utility/cholmod_l_band.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_band_nnz.c -o Utility/cholmod_band_nnz.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_band_nnz.c -o Utility/cholmod_l_band_nnz.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_calloc.c -o Utility/cholmod_calloc.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_calloc.c -o Utility/cholmod_l_calloc.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_change_factor.c -o Utility/cholmod_change_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_change_factor.c -o Utility/cholmod_l_change_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_clear_flag.c -o Utility/cholmod_clear_flag.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_clear_flag.c -o Utility/cholmod_l_clear_flag.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_copy.c -o Utility/cholmod_copy.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_copy.c -o Utility/cholmod_l_copy.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_copy_dense.c -o Utility/cholmod_copy_dense.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_copy_dense.c -o Utility/cholmod_l_copy_dense.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_copy_dense2.c -o Utility/cholmod_copy_dense2.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_copy_dense2.c -o Utility/cholmod_l_copy_dense2.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_copy_factor.c -o Utility/cholmod_copy_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_copy_factor.c -o Utility/cholmod_l_copy_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_copy_sparse.c -o Utility/cholmod_copy_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_copy_sparse.c -o Utility/cholmod_l_copy_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_copy_triplet.c -o Utility/cholmod_copy_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_copy_triplet.c -o Utility/cholmod_l_copy_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_cumsum.c -o Utility/cholmod_cumsum.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_cumsum.c -o Utility/cholmod_l_cumsum.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_dbound.c -o Utility/cholmod_dbound.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_dbound.c -o Utility/cholmod_l_dbound.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_defaults.c -o Utility/cholmod_defaults.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_defaults.c -o Utility/cholmod_l_defaults.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_dense_nnz.c -o Utility/cholmod_dense_nnz.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_dense_nnz.c -o Utility/cholmod_l_dense_nnz.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_dense_to_sparse.c -o Utility/cholmod_dense_to_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_dense_to_sparse.c -o Utility/cholmod_l_dense_to_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_divcomplex.c -o Utility/cholmod_divcomplex.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_divcomplex.c -o Utility/cholmod_l_divcomplex.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_ensure_dense.c -o Utility/cholmod_ensure_dense.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_ensure_dense.c -o Utility/cholmod_l_ensure_dense.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_error.c -o Utility/cholmod_error.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_error.c -o Utility/cholmod_l_error.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_eye.c -o Utility/cholmod_eye.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_eye.c -o Utility/cholmod_l_eye.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_factor_to_sparse.c -o Utility/cholmod_factor_to_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_factor_to_sparse.c -o Utility/cholmod_l_factor_to_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_finish.c -o Utility/cholmod_finish.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_finish.c -o Utility/cholmod_l_finish.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_free.c -o Utility/cholmod_free.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_free.c -o Utility/cholmod_l_free.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_free_dense.c -o Utility/cholmod_free_dense.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_free_dense.c -o Utility/cholmod_l_free_dense.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_free_factor.c -o Utility/cholmod_free_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_free_factor.c -o Utility/cholmod_l_free_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_free_sparse.c -o Utility/cholmod_free_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_free_sparse.c -o Utility/cholmod_l_free_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_free_triplet.c -o Utility/cholmod_free_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_free_triplet.c -o Utility/cholmod_l_free_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_free_work.c -o Utility/cholmod_free_work.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_free_work.c -o Utility/cholmod_l_free_work.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_hypot.c -o Utility/cholmod_hypot.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_hypot.c -o Utility/cholmod_l_hypot.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_malloc.c -o Utility/cholmod_malloc.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_malloc.c -o Utility/cholmod_l_malloc.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_maxrank.c -o Utility/cholmod_maxrank.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_maxrank.c -o Utility/cholmod_l_maxrank.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_memdebug.c -o Utility/cholmod_memdebug.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_mult_size_t.c -o Utility/cholmod_mult_size_t.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_mult_size_t.c -o Utility/cholmod_l_mult_size_t.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_mult_uint64_t.c -o Utility/cholmod_mult_uint64_t.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_nnz.c -o Utility/cholmod_nnz.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_nnz.c -o Utility/cholmod_l_nnz.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_ones.c -o Utility/cholmod_ones.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_ones.c -o Utility/cholmod_l_ones.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_pack_factor.c -o Utility/cholmod_pack_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_pack_factor.c -o Utility/cholmod_l_pack_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_ptranspose.c -o Utility/cholmod_ptranspose.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_ptranspose.c -o Utility/cholmod_l_ptranspose.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_realloc.c -o Utility/cholmod_realloc.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_realloc.c -o Utility/cholmod_l_realloc.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_realloc_multiple.c -o Utility/cholmod_realloc_multiple.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_realloc_multiple.c -o Utility/cholmod_l_realloc_multiple.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_reallocate_column.c -o Utility/cholmod_reallocate_column.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_reallocate_column.c -o Utility/cholmod_l_reallocate_column.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_reallocate_factor.c -o Utility/cholmod_reallocate_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_reallocate_factor.c -o Utility/cholmod_l_reallocate_factor.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_reallocate_sparse.c -o Utility/cholmod_reallocate_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_reallocate_sparse.c -o Utility/cholmod_l_reallocate_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_reallocate_triplet.c -o Utility/cholmod_reallocate_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_reallocate_triplet.c -o Utility/cholmod_l_reallocate_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_sbound.c -o Utility/cholmod_sbound.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_sbound.c -o Utility/cholmod_l_sbound.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_score_comp.c -o Utility/cholmod_score_comp.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_score_comp.c -o Utility/cholmod_l_score_comp.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_set_empty.c -o Utility/cholmod_set_empty.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_set_empty.c -o Utility/cholmod_l_set_empty.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_sort.c -o Utility/cholmod_sort.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_sort.c -o Utility/cholmod_l_sort.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_sparse_to_dense.c -o Utility/cholmod_sparse_to_dense.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_sparse_to_dense.c -o Utility/cholmod_l_sparse_to_dense.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_sparse_to_triplet.c -o Utility/cholmod_sparse_to_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_sparse_to_triplet.c -o Utility/cholmod_l_sparse_to_triplet.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_speye.c -o Utility/cholmod_speye.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_speye.c -o Utility/cholmod_l_speye.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_spzeros.c -o Utility/cholmod_spzeros.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_spzeros.c -o Utility/cholmod_l_spzeros.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_start.c -o Utility/cholmod_start.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_start.c -o Utility/cholmod_l_start.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_transpose.c -o Utility/cholmod_transpose.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_transpose.c -o Utility/cholmod_l_transpose.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_transpose_sym.c -o Utility/cholmod_transpose_sym.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_transpose_sym.c -o Utility/cholmod_l_transpose_sym.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_transpose_unsym.c -o Utility/cholmod_transpose_unsym.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_transpose_unsym.c -o Utility/cholmod_l_transpose_unsym.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_triplet_to_sparse.c -o Utility/cholmod_triplet_to_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_triplet_to_sparse.c -o Utility/cholmod_l_triplet_to_sparse.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_version.c -o Utility/cholmod_version.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_version.c -o Utility/cholmod_l_version.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_xtype.c -o Utility/cholmod_xtype.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_xtype.c -o Utility/cholmod_l_xtype.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_zeros.c -o Utility/cholmod_zeros.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Utility/cholmod_l_zeros.c -o Utility/cholmod_l_zeros.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c MatrixOps/cholmod_drop.c -o MatrixOps/cholmod_drop.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_drop.c -o MatrixOps/cholmod_l_drop.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c MatrixOps/cholmod_horzcat.c -o MatrixOps/cholmod_horzcat.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_horzcat.c -o MatrixOps/cholmod_l_horzcat.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c MatrixOps/cholmod_norm.c -o MatrixOps/cholmod_norm.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_norm.c -o MatrixOps/cholmod_l_norm.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c MatrixOps/cholmod_scale.c -o MatrixOps/cholmod_scale.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_scale.c -o MatrixOps/cholmod_l_scale.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c MatrixOps/cholmod_sdmult.c -o MatrixOps/cholmod_sdmult.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_sdmult.c -o MatrixOps/cholmod_l_sdmult.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c MatrixOps/cholmod_ssmult.c -o MatrixOps/cholmod_ssmult.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_ssmult.c -o MatrixOps/cholmod_l_ssmult.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c MatrixOps/cholmod_submatrix.c -o MatrixOps/cholmod_submatrix.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_submatrix.c -o MatrixOps/cholmod_l_submatrix.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c MatrixOps/cholmod_symmetry.c -o MatrixOps/cholmod_symmetry.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_symmetry.c -o MatrixOps/cholmod_l_symmetry.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c MatrixOps/cholmod_vertcat.c -o MatrixOps/cholmod_vertcat.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_vertcat.c -o MatrixOps/cholmod_l_vertcat.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Modify/cholmod_rowadd.c -o Modify/cholmod_rowadd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Modify/cholmod_l_rowadd.c -o Modify/cholmod_l_rowadd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Modify/cholmod_rowdel.c -o Modify/cholmod_rowdel.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Modify/cholmod_l_rowdel.c -o Modify/cholmod_l_rowdel.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Modify/cholmod_updown.c -o Modify/cholmod_updown.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Modify/cholmod_l_updown.c -o Modify/cholmod_l_updown.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Partition/cholmod_camd.c -o Partition/cholmod_camd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Partition/cholmod_l_camd.c -o Partition/cholmod_l_camd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Partition/cholmod_ccolamd.c -o Partition/cholmod_ccolamd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Partition/cholmod_l_ccolamd.c -o Partition/cholmod_l_ccolamd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Partition/cholmod_csymamd.c -o Partition/cholmod_csymamd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Partition/cholmod_l_csymamd.c -o Partition/cholmod_l_csymamd.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Partition/cholmod_metis.c -o Partition/cholmod_metis.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Partition/cholmod_l_metis.c -o Partition/cholmod_l_metis.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Partition/cholmod_metis_wrapper.c -o Partition/cholmod_metis_wrapper.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Partition/cholmod_nesdis.c -o Partition/cholmod_nesdis.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Partition/cholmod_l_nesdis.c -o Partition/cholmod_l_nesdis.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Supernodal/cholmod_super_numeric.c -o Supernodal/cholmod_super_numeric.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Supernodal/cholmod_l_super_numeric.c -o Supernodal/cholmod_l_super_numeric.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Supernodal/cholmod_super_solve.c -o Supernodal/cholmod_super_solve.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Supernodal/cholmod_l_super_solve.c -o Supernodal/cholmod_l_super_solve.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Supernodal/cholmod_super_symbolic.c -o Supernodal/cholmod_super_symbolic.o gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Supernodal/cholmod_l_super_symbolic.c -o Supernodal/cholmod_l_super_symbolic.o rm -f CHOLMOD.a ar -cr CHOLMOD.a Check/cholmod_check.o Check/cholmod_l_check.o Check/cholmod_read.o Check/cholmod_l_read.o Check/cholmod_write.o Check/cholmod_l_write.o Cholesky/cholmod_amd.o Cholesky/cholmod_l_amd.o Cholesky/cholmod_analyze.o Cholesky/cholmod_l_analyze.o Cholesky/cholmod_colamd.o Cholesky/cholmod_l_colamd.o Cholesky/cholmod_etree.o Cholesky/cholmod_l_etree.o Cholesky/cholmod_factorize.o Cholesky/cholmod_l_factorize.o Cholesky/cholmod_postorder.o Cholesky/cholmod_l_postorder.o Cholesky/cholmod_rcond.o Cholesky/cholmod_l_rcond.o Cholesky/cholmod_resymbol.o Cholesky/cholmod_l_resymbol.o Cholesky/cholmod_rowcolcounts.o Cholesky/cholmod_l_rowcolcounts.o Cholesky/cholmod_rowfac.o Cholesky/cholmod_l_rowfac.o Cholesky/cholmod_solve.o Cholesky/cholmod_l_solve.o Cholesky/cholmod_spsolve.o Cholesky/cholmod_l_spsolve.o Utility/cholmod_aat.o Utility/cholmod_l_aat.o Utility/cholmod_add.o Utility/cholmod_l_add.o Utility/cholmod_add_size_t.o Utility/cholmod_l_add_size_t.o Utility/cholmod_alloc_factor.o Utility/cholmod_l_alloc_factor.o Utility/cholmod_alloc_work.o Utility/cholmod_l_alloc_work.o Utility/cholmod_allocate_dense.o Utility/cholmod_l_allocate_dense.o Utility/cholmod_allocate_factor.o Utility/cholmod_l_allocate_factor.o Utility/cholmod_allocate_sparse.o Utility/cholmod_l_allocate_sparse.o Utility/cholmod_allocate_triplet.o Utility/cholmod_l_allocate_triplet.o Utility/cholmod_allocate_work.o Utility/cholmod_l_allocate_work.o Utility/cholmod_band.o Utility/cholmod_l_band.o Utility/cholmod_band_nnz.o Utility/cholmod_l_band_nnz.o Utility/cholmod_calloc.o Utility/cholmod_l_calloc.o Utility/cholmod_change_factor.o Utility/cholmod_l_change_factor.o Utility/cholmod_clear_flag.o Utility/cholmod_l_clear_flag.o Utility/cholmod_copy.o Utility/cholmod_l_copy.o Utility/cholmod_copy_dense.o Utility/cholmod_l_copy_dense.o Utility/cholmod_copy_dense2.o Utility/cholmod_l_copy_dense2.o Utility/cholmod_copy_factor.o Utility/cholmod_l_copy_factor.o Utility/cholmod_copy_sparse.o Utility/cholmod_l_copy_sparse.o Utility/cholmod_copy_triplet.o Utility/cholmod_l_copy_triplet.o Utility/cholmod_cumsum.o Utility/cholmod_l_cumsum.o Utility/cholmod_dbound.o Utility/cholmod_l_dbound.o Utility/cholmod_defaults.o Utility/cholmod_l_defaults.o Utility/cholmod_dense_nnz.o Utility/cholmod_l_dense_nnz.o Utility/cholmod_dense_to_sparse.o Utility/cholmod_l_dense_to_sparse.o Utility/cholmod_divcomplex.o Utility/cholmod_l_divcomplex.o Utility/cholmod_ensure_dense.o Utility/cholmod_l_ensure_dense.o Utility/cholmod_error.o Utility/cholmod_l_error.o Utility/cholmod_eye.o Utility/cholmod_l_eye.o Utility/cholmod_factor_to_sparse.o Utility/cholmod_l_factor_to_sparse.o Utility/cholmod_finish.o Utility/cholmod_l_finish.o Utility/cholmod_free.o Utility/cholmod_l_free.o Utility/cholmod_free_dense.o Utility/cholmod_l_free_dense.o Utility/cholmod_free_factor.o Utility/cholmod_l_free_factor.o Utility/cholmod_free_sparse.o Utility/cholmod_l_free_sparse.o Utility/cholmod_free_triplet.o Utility/cholmod_l_free_triplet.o Utility/cholmod_free_work.o Utility/cholmod_l_free_work.o Utility/cholmod_hypot.o Utility/cholmod_l_hypot.o Utility/cholmod_malloc.o Utility/cholmod_l_malloc.o Utility/cholmod_maxrank.o Utility/cholmod_l_maxrank.o Utility/cholmod_memdebug.o Utility/cholmod_mult_size_t.o Utility/cholmod_l_mult_size_t.o Utility/cholmod_mult_uint64_t.o Utility/cholmod_nnz.o Utility/cholmod_l_nnz.o Utility/cholmod_ones.o Utility/cholmod_l_ones.o Utility/cholmod_pack_factor.o Utility/cholmod_l_pack_factor.o Utility/cholmod_ptranspose.o Utility/cholmod_l_ptranspose.o Utility/cholmod_realloc.o Utility/cholmod_l_realloc.o Utility/cholmod_realloc_multiple.o Utility/cholmod_l_realloc_multiple.o Utility/cholmod_reallocate_column.o Utility/cholmod_l_reallocate_column.o Utility/cholmod_reallocate_factor.o Utility/cholmod_l_reallocate_factor.o Utility/cholmod_reallocate_sparse.o Utility/cholmod_l_reallocate_sparse.o Utility/cholmod_reallocate_triplet.o Utility/cholmod_l_reallocate_triplet.o Utility/cholmod_sbound.o Utility/cholmod_l_sbound.o Utility/cholmod_score_comp.o Utility/cholmod_l_score_comp.o Utility/cholmod_set_empty.o Utility/cholmod_l_set_empty.o Utility/cholmod_sort.o Utility/cholmod_l_sort.o Utility/cholmod_sparse_to_dense.o Utility/cholmod_l_sparse_to_dense.o Utility/cholmod_sparse_to_triplet.o Utility/cholmod_l_sparse_to_triplet.o Utility/cholmod_speye.o Utility/cholmod_l_speye.o Utility/cholmod_spzeros.o Utility/cholmod_l_spzeros.o Utility/cholmod_start.o Utility/cholmod_l_start.o Utility/cholmod_transpose.o Utility/cholmod_l_transpose.o Utility/cholmod_transpose_sym.o Utility/cholmod_l_transpose_sym.o Utility/cholmod_transpose_unsym.o Utility/cholmod_l_transpose_unsym.o Utility/cholmod_triplet_to_sparse.o Utility/cholmod_l_triplet_to_sparse.o Utility/cholmod_version.o Utility/cholmod_l_version.o Utility/cholmod_xtype.o Utility/cholmod_l_xtype.o Utility/cholmod_zeros.o Utility/cholmod_l_zeros.o MatrixOps/cholmod_drop.o MatrixOps/cholmod_l_drop.o MatrixOps/cholmod_horzcat.o MatrixOps/cholmod_l_horzcat.o MatrixOps/cholmod_norm.o MatrixOps/cholmod_l_norm.o MatrixOps/cholmod_scale.o MatrixOps/cholmod_l_scale.o MatrixOps/cholmod_sdmult.o MatrixOps/cholmod_l_sdmult.o MatrixOps/cholmod_ssmult.o MatrixOps/cholmod_l_ssmult.o MatrixOps/cholmod_submatrix.o MatrixOps/cholmod_l_submatrix.o MatrixOps/cholmod_symmetry.o MatrixOps/cholmod_l_symmetry.o MatrixOps/cholmod_vertcat.o MatrixOps/cholmod_l_vertcat.o Modify/cholmod_rowadd.o Modify/cholmod_l_rowadd.o Modify/cholmod_rowdel.o Modify/cholmod_l_rowdel.o Modify/cholmod_updown.o Modify/cholmod_l_updown.o Partition/cholmod_camd.o Partition/cholmod_l_camd.o Partition/cholmod_ccolamd.o Partition/cholmod_l_ccolamd.o Partition/cholmod_csymamd.o Partition/cholmod_l_csymamd.o Partition/cholmod_metis.o Partition/cholmod_l_metis.o Partition/cholmod_metis_wrapper.o Partition/cholmod_nesdis.o Partition/cholmod_l_nesdis.o Supernodal/cholmod_super_numeric.o Supernodal/cholmod_l_super_numeric.o Supernodal/cholmod_super_solve.o Supernodal/cholmod_l_super_solve.o Supernodal/cholmod_super_symbolic.o Supernodal/cholmod_l_super_symbolic.o ranlib CHOLMOD.a make[4]: Leaving directory '/tmp/Rtmp3bsSDE/R.INSTALL45ac5ce250fd/Matrix/src/SuiteSparse/CHOLMOD' cd SuiteSparse/CCOLAMD && make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/builddir/build/BUILD/R-4.5.2/include\" -I\"/builddir/build/BUILD/R-4.5.2/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" make[4]: Entering directory '/tmp/Rtmp3bsSDE/R.INSTALL45ac5ce250fd/Matrix/src/SuiteSparse/CCOLAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/ccolamd.c -o Source/ccolamd.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/ccolamd_l.c -o Source/ccolamd_l.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/ccolamd_version.c -o Source/ccolamd_version.o rm -f CCOLAMD.a ar -cr CCOLAMD.a Source/ccolamd.o Source/ccolamd_l.o Source/ccolamd_version.o ranlib CCOLAMD.a make[4]: Leaving directory '/tmp/Rtmp3bsSDE/R.INSTALL45ac5ce250fd/Matrix/src/SuiteSparse/CCOLAMD' cd SuiteSparse/CAMD && make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/builddir/build/BUILD/R-4.5.2/include\" -I\"/builddir/build/BUILD/R-4.5.2/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" make[4]: Entering directory '/tmp/Rtmp3bsSDE/R.INSTALL45ac5ce250fd/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/camd_1.c -o Source/camd_1.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/camd_l1.c -o Source/camd_l1.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/camd_2.c -o Source/camd_2.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/camd_l2.c -o Source/camd_l2.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/camd_aat.c -o Source/camd_aat.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/camd_l_aat.c -o Source/camd_l_aat.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/camd_control.c -o Source/camd_control.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/camd_l_control.c -o Source/camd_l_control.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/camd_defaults.c -o Source/camd_defaults.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/camd_l_defaults.c -o Source/camd_l_defaults.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/camd_dump.c -o Source/camd_dump.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/camd_l_dump.c -o Source/camd_l_dump.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/camd_info.c -o Source/camd_info.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/camd_l_info.c -o Source/camd_l_info.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/camd_order.c -o Source/camd_order.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/camd_l_order.c -o Source/camd_l_order.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/camd_postorder.c -o Source/camd_postorder.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/camd_l_postorder.c -o Source/camd_l_postorder.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/camd_preprocess.c -o Source/camd_preprocess.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/camd_l_preprocess.c -o Source/camd_l_preprocess.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/camd_valid.c -o Source/camd_valid.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/camd_l_valid.c -o Source/camd_l_valid.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/camd_version.c -o Source/camd_version.o rm -f CAMD.a ar -cr CAMD.a Source/camd_1.o Source/camd_l1.o Source/camd_2.o Source/camd_l2.o Source/camd_aat.o Source/camd_l_aat.o Source/camd_control.o Source/camd_l_control.o Source/camd_defaults.o Source/camd_l_defaults.o Source/camd_dump.o Source/camd_l_dump.o Source/camd_info.o Source/camd_l_info.o Source/camd_order.o Source/camd_l_order.o Source/camd_postorder.o Source/camd_l_postorder.o Source/camd_preprocess.o Source/camd_l_preprocess.o Source/camd_valid.o Source/camd_l_valid.o Source/camd_version.o ranlib CAMD.a make[4]: Leaving directory '/tmp/Rtmp3bsSDE/R.INSTALL45ac5ce250fd/Matrix/src/SuiteSparse/CAMD' cd SuiteSparse/COLAMD && make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/builddir/build/BUILD/R-4.5.2/include\" -I\"/builddir/build/BUILD/R-4.5.2/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" make[4]: Entering directory '/tmp/Rtmp3bsSDE/R.INSTALL45ac5ce250fd/Matrix/src/SuiteSparse/COLAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/colamd.c -o Source/colamd.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/colamd_l.c -o Source/colamd_l.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/colamd_version.c -o Source/colamd_version.o rm -f COLAMD.a ar -cr COLAMD.a Source/colamd.o Source/colamd_l.o Source/colamd_version.o ranlib COLAMD.a make[4]: Leaving directory '/tmp/Rtmp3bsSDE/R.INSTALL45ac5ce250fd/Matrix/src/SuiteSparse/COLAMD' cd SuiteSparse/AMD && make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/builddir/build/BUILD/R-4.5.2/include\" -I\"/builddir/build/BUILD/R-4.5.2/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" make[4]: Entering directory '/tmp/Rtmp3bsSDE/R.INSTALL45ac5ce250fd/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_1.c -o Source/amd_1.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_l1.c -o Source/amd_l1.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_2.c -o Source/amd_2.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_l2.c -o Source/amd_l2.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_aat.c -o Source/amd_aat.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_l_aat.c -o Source/amd_l_aat.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_control.c -o Source/amd_control.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_l_control.c -o Source/amd_l_control.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_defaults.c -o Source/amd_defaults.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_l_defaults.c -o Source/amd_l_defaults.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_dump.c -o Source/amd_dump.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_l_dump.c -o Source/amd_l_dump.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_info.c -o Source/amd_info.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_l_info.c -o Source/amd_l_info.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_order.c -o Source/amd_order.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_l_order.c -o Source/amd_l_order.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_post_tree.c -o Source/amd_post_tree.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_l_post_tree.c -o Source/amd_l_post_tree.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_postorder.c -o Source/amd_postorder.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_l_postorder.c -o Source/amd_l_postorder.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_preprocess.c -o Source/amd_preprocess.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_l_preprocess.c -o Source/amd_l_preprocess.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_valid.c -o Source/amd_valid.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_l_valid.c -o Source/amd_l_valid.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/amd_version.c -o Source/amd_version.o rm -f AMD.a ar -cr AMD.a Source/amd_1.o Source/amd_l1.o Source/amd_2.o Source/amd_l2.o Source/amd_aat.o Source/amd_l_aat.o Source/amd_control.o Source/amd_l_control.o Source/amd_defaults.o Source/amd_l_defaults.o Source/amd_dump.o Source/amd_l_dump.o Source/amd_info.o Source/amd_l_info.o Source/amd_order.o Source/amd_l_order.o Source/amd_post_tree.o Source/amd_l_post_tree.o Source/amd_postorder.o Source/amd_l_postorder.o Source/amd_preprocess.o Source/amd_l_preprocess.o Source/amd_valid.o Source/amd_l_valid.o Source/amd_version.o ranlib AMD.a make[4]: Leaving directory '/tmp/Rtmp3bsSDE/R.INSTALL45ac5ce250fd/Matrix/src/SuiteSparse/AMD' cd SuiteSparse/CXSparse && make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/builddir/build/BUILD/R-4.5.2/include\" -I\"/builddir/build/BUILD/R-4.5.2/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" make[4]: Entering directory '/tmp/Rtmp3bsSDE/R.INSTALL45ac5ce250fd/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_add.c -o Source/cs_add.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_add.c -o Source/cs_dl_add.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_add.c -o Source/cs_ci_add.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_add.c -o Source/cs_cl_add.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_amd.c -o Source/cs_amd.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_amd.c -o Source/cs_dl_amd.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_amd.c -o Source/cs_ci_amd.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_amd.c -o Source/cs_cl_amd.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_chol.c -o Source/cs_chol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_chol.c -o Source/cs_dl_chol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_chol.c -o Source/cs_ci_chol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_chol.c -o Source/cs_cl_chol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cholsol.c -o Source/cs_cholsol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_cholsol.c -o Source/cs_dl_cholsol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_cholsol.c -o Source/cs_ci_cholsol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_cholsol.c -o Source/cs_cl_cholsol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_compress.c -o Source/cs_compress.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_compress.c -o Source/cs_dl_compress.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_compress.c -o Source/cs_ci_compress.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_compress.c -o Source/cs_cl_compress.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_convert.c -o Source/cs_convert.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_counts.c -o Source/cs_counts.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_counts.c -o Source/cs_dl_counts.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_counts.c -o Source/cs_ci_counts.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_counts.c -o Source/cs_cl_counts.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cumsum.c -o Source/cs_cumsum.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_cumsum.c -o Source/cs_dl_cumsum.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_cumsum.c -o Source/cs_ci_cumsum.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_cumsum.c -o Source/cs_cl_cumsum.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dfs.c -o Source/cs_dfs.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_dfs.c -o Source/cs_dl_dfs.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_dfs.c -o Source/cs_ci_dfs.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_dfs.c -o Source/cs_cl_dfs.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dmperm.c -o Source/cs_dmperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_dmperm.c -o Source/cs_dl_dmperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_dmperm.c -o Source/cs_ci_dmperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_dmperm.c -o Source/cs_cl_dmperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_droptol.c -o Source/cs_droptol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_droptol.c -o Source/cs_dl_droptol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_droptol.c -o Source/cs_ci_droptol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_droptol.c -o Source/cs_cl_droptol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dropzeros.c -o Source/cs_dropzeros.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_dropzeros.c -o Source/cs_dl_dropzeros.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_dropzeros.c -o Source/cs_ci_dropzeros.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_dropzeros.c -o Source/cs_cl_dropzeros.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dupl.c -o Source/cs_dupl.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_dupl.c -o Source/cs_dl_dupl.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_dupl.c -o Source/cs_ci_dupl.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_dupl.c -o Source/cs_cl_dupl.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_entry.c -o Source/cs_entry.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_entry.c -o Source/cs_dl_entry.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_entry.c -o Source/cs_ci_entry.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_entry.c -o Source/cs_cl_entry.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ereach.c -o Source/cs_ereach.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_ereach.c -o Source/cs_dl_ereach.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_ereach.c -o Source/cs_ci_ereach.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_ereach.c -o Source/cs_cl_ereach.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_etree.c -o Source/cs_etree.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_etree.c -o Source/cs_dl_etree.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_etree.c -o Source/cs_ci_etree.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_etree.c -o Source/cs_cl_etree.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_fkeep.c -o Source/cs_fkeep.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_fkeep.c -o Source/cs_dl_fkeep.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_fkeep.c -o Source/cs_ci_fkeep.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_fkeep.c -o Source/cs_cl_fkeep.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_gaxpy.c -o Source/cs_gaxpy.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_gaxpy.c -o Source/cs_dl_gaxpy.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_gaxpy.c -o Source/cs_ci_gaxpy.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_gaxpy.c -o Source/cs_cl_gaxpy.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_happly.c -o Source/cs_happly.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_happly.c -o Source/cs_dl_happly.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_happly.c -o Source/cs_ci_happly.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_happly.c -o Source/cs_cl_happly.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_house.c -o Source/cs_house.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_house.c -o Source/cs_dl_house.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_house.c -o Source/cs_ci_house.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_house.c -o Source/cs_cl_house.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ipvec.c -o Source/cs_ipvec.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_ipvec.c -o Source/cs_dl_ipvec.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_ipvec.c -o Source/cs_ci_ipvec.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_ipvec.c -o Source/cs_cl_ipvec.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_leaf.c -o Source/cs_leaf.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_leaf.c -o Source/cs_dl_leaf.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_leaf.c -o Source/cs_ci_leaf.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_leaf.c -o Source/cs_cl_leaf.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_load.c -o Source/cs_load.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_load.c -o Source/cs_dl_load.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_load.c -o Source/cs_ci_load.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_load.c -o Source/cs_cl_load.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_lsolve.c -o Source/cs_lsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_lsolve.c -o Source/cs_dl_lsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_lsolve.c -o Source/cs_ci_lsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_lsolve.c -o Source/cs_cl_lsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ltsolve.c -o Source/cs_ltsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_ltsolve.c -o Source/cs_dl_ltsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_ltsolve.c -o Source/cs_ci_ltsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_ltsolve.c -o Source/cs_cl_ltsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_lu.c -o Source/cs_lu.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_lu.c -o Source/cs_dl_lu.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_lu.c -o Source/cs_ci_lu.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_lu.c -o Source/cs_cl_lu.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_lusol.c -o Source/cs_lusol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_lusol.c -o Source/cs_dl_lusol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_lusol.c -o Source/cs_ci_lusol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_lusol.c -o Source/cs_cl_lusol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_malloc.c -o Source/cs_malloc.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_malloc.c -o Source/cs_dl_malloc.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_malloc.c -o Source/cs_ci_malloc.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_malloc.c -o Source/cs_cl_malloc.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_maxtrans.c -o Source/cs_maxtrans.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_maxtrans.c -o Source/cs_dl_maxtrans.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_maxtrans.c -o Source/cs_ci_maxtrans.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_maxtrans.c -o Source/cs_cl_maxtrans.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_multiply.c -o Source/cs_multiply.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_multiply.c -o Source/cs_dl_multiply.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_multiply.c -o Source/cs_ci_multiply.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_multiply.c -o Source/cs_cl_multiply.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_norm.c -o Source/cs_norm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_norm.c -o Source/cs_dl_norm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_norm.c -o Source/cs_ci_norm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_norm.c -o Source/cs_cl_norm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_permute.c -o Source/cs_permute.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_permute.c -o Source/cs_dl_permute.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_permute.c -o Source/cs_ci_permute.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_permute.c -o Source/cs_cl_permute.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_pinv.c -o Source/cs_pinv.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_pinv.c -o Source/cs_dl_pinv.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_pinv.c -o Source/cs_ci_pinv.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_pinv.c -o Source/cs_cl_pinv.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_post.c -o Source/cs_post.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_post.c -o Source/cs_dl_post.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_post.c -o Source/cs_ci_post.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_post.c -o Source/cs_cl_post.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_print.c -o Source/cs_print.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_print.c -o Source/cs_dl_print.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_print.c -o Source/cs_ci_print.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_print.c -o Source/cs_cl_print.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_pvec.c -o Source/cs_pvec.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_pvec.c -o Source/cs_dl_pvec.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_pvec.c -o Source/cs_ci_pvec.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_pvec.c -o Source/cs_cl_pvec.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_qr.c -o Source/cs_qr.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_qr.c -o Source/cs_dl_qr.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_qr.c -o Source/cs_ci_qr.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_qr.c -o Source/cs_cl_qr.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_qrsol.c -o Source/cs_qrsol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_qrsol.c -o Source/cs_dl_qrsol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_qrsol.c -o Source/cs_ci_qrsol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_qrsol.c -o Source/cs_cl_qrsol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_randperm.c -o Source/cs_randperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_randperm.c -o Source/cs_dl_randperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_randperm.c -o Source/cs_ci_randperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_randperm.c -o Source/cs_cl_randperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_reach.c -o Source/cs_reach.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_reach.c -o Source/cs_dl_reach.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_reach.c -o Source/cs_ci_reach.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_reach.c -o Source/cs_cl_reach.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_scatter.c -o Source/cs_scatter.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_scatter.c -o Source/cs_dl_scatter.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_scatter.c -o Source/cs_ci_scatter.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_scatter.c -o Source/cs_cl_scatter.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_scc.c -o Source/cs_scc.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_scc.c -o Source/cs_dl_scc.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_scc.c -o Source/cs_ci_scc.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_scc.c -o Source/cs_cl_scc.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_schol.c -o Source/cs_schol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_schol.c -o Source/cs_dl_schol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_schol.c -o Source/cs_ci_schol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_schol.c -o Source/cs_cl_schol.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_spsolve.c -o Source/cs_spsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_spsolve.c -o Source/cs_dl_spsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_spsolve.c -o Source/cs_ci_spsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_spsolve.c -o Source/cs_cl_spsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_sqr.c -o Source/cs_sqr.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_sqr.c -o Source/cs_dl_sqr.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_sqr.c -o Source/cs_ci_sqr.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_sqr.c -o Source/cs_cl_sqr.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_symperm.c -o Source/cs_symperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_symperm.c -o Source/cs_dl_symperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_symperm.c -o Source/cs_ci_symperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_symperm.c -o Source/cs_cl_symperm.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_tdfs.c -o Source/cs_tdfs.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_tdfs.c -o Source/cs_dl_tdfs.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_tdfs.c -o Source/cs_ci_tdfs.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_tdfs.c -o Source/cs_cl_tdfs.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_transpose.c -o Source/cs_transpose.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_transpose.c -o Source/cs_dl_transpose.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_transpose.c -o Source/cs_ci_transpose.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_transpose.c -o Source/cs_cl_transpose.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_updown.c -o Source/cs_updown.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_updown.c -o Source/cs_dl_updown.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_updown.c -o Source/cs_ci_updown.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_updown.c -o Source/cs_cl_updown.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_usolve.c -o Source/cs_usolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_usolve.c -o Source/cs_dl_usolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_usolve.c -o Source/cs_ci_usolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_usolve.c -o Source/cs_cl_usolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_util.c -o Source/cs_util.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_util.c -o Source/cs_dl_util.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_util.c -o Source/cs_ci_util.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_util.c -o Source/cs_cl_util.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_utsolve.c -o Source/cs_utsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_dl_utsolve.c -o Source/cs_dl_utsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_ci_utsolve.c -o Source/cs_ci_utsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cs_cl_utsolve.c -o Source/cs_cl_utsolve.o gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c Source/cxsparse_version.c -o Source/cxsparse_version.o rm -f CXSparse.a ar -cr CXSparse.a Source/cs_add.o Source/cs_dl_add.o Source/cs_ci_add.o Source/cs_cl_add.o Source/cs_amd.o Source/cs_dl_amd.o Source/cs_ci_amd.o Source/cs_cl_amd.o Source/cs_chol.o Source/cs_dl_chol.o Source/cs_ci_chol.o Source/cs_cl_chol.o Source/cs_cholsol.o Source/cs_dl_cholsol.o Source/cs_ci_cholsol.o Source/cs_cl_cholsol.o Source/cs_compress.o Source/cs_dl_compress.o Source/cs_ci_compress.o Source/cs_cl_compress.o Source/cs_convert.o Source/cs_counts.o Source/cs_dl_counts.o Source/cs_ci_counts.o Source/cs_cl_counts.o Source/cs_cumsum.o Source/cs_dl_cumsum.o Source/cs_ci_cumsum.o Source/cs_cl_cumsum.o Source/cs_dfs.o Source/cs_dl_dfs.o Source/cs_ci_dfs.o Source/cs_cl_dfs.o Source/cs_dmperm.o Source/cs_dl_dmperm.o Source/cs_ci_dmperm.o Source/cs_cl_dmperm.o Source/cs_droptol.o Source/cs_dl_droptol.o Source/cs_ci_droptol.o Source/cs_cl_droptol.o Source/cs_dropzeros.o Source/cs_dl_dropzeros.o Source/cs_ci_dropzeros.o Source/cs_cl_dropzeros.o Source/cs_dupl.o Source/cs_dl_dupl.o Source/cs_ci_dupl.o Source/cs_cl_dupl.o Source/cs_entry.o Source/cs_dl_entry.o Source/cs_ci_entry.o Source/cs_cl_entry.o Source/cs_ereach.o Source/cs_dl_ereach.o Source/cs_ci_ereach.o Source/cs_cl_ereach.o Source/cs_etree.o Source/cs_dl_etree.o Source/cs_ci_etree.o Source/cs_cl_etree.o Source/cs_fkeep.o Source/cs_dl_fkeep.o Source/cs_ci_fkeep.o Source/cs_cl_fkeep.o Source/cs_gaxpy.o Source/cs_dl_gaxpy.o Source/cs_ci_gaxpy.o Source/cs_cl_gaxpy.o Source/cs_happly.o Source/cs_dl_happly.o Source/cs_ci_happly.o Source/cs_cl_happly.o Source/cs_house.o Source/cs_dl_house.o Source/cs_ci_house.o Source/cs_cl_house.o Source/cs_ipvec.o Source/cs_dl_ipvec.o Source/cs_ci_ipvec.o Source/cs_cl_ipvec.o Source/cs_leaf.o Source/cs_dl_leaf.o Source/cs_ci_leaf.o Source/cs_cl_leaf.o Source/cs_load.o Source/cs_dl_load.o Source/cs_ci_load.o Source/cs_cl_load.o Source/cs_lsolve.o Source/cs_dl_lsolve.o Source/cs_ci_lsolve.o Source/cs_cl_lsolve.o Source/cs_ltsolve.o Source/cs_dl_ltsolve.o Source/cs_ci_ltsolve.o Source/cs_cl_ltsolve.o Source/cs_lu.o Source/cs_dl_lu.o Source/cs_ci_lu.o Source/cs_cl_lu.o Source/cs_lusol.o Source/cs_dl_lusol.o Source/cs_ci_lusol.o Source/cs_cl_lusol.o Source/cs_malloc.o Source/cs_dl_malloc.o Source/cs_ci_malloc.o Source/cs_cl_malloc.o Source/cs_maxtrans.o Source/cs_dl_maxtrans.o Source/cs_ci_maxtrans.o Source/cs_cl_maxtrans.o Source/cs_multiply.o Source/cs_dl_multiply.o Source/cs_ci_multiply.o Source/cs_cl_multiply.o Source/cs_norm.o Source/cs_dl_norm.o Source/cs_ci_norm.o Source/cs_cl_norm.o Source/cs_permute.o Source/cs_dl_permute.o Source/cs_ci_permute.o Source/cs_cl_permute.o Source/cs_pinv.o Source/cs_dl_pinv.o Source/cs_ci_pinv.o Source/cs_cl_pinv.o Source/cs_post.o Source/cs_dl_post.o Source/cs_ci_post.o Source/cs_cl_post.o Source/cs_print.o Source/cs_dl_print.o Source/cs_ci_print.o Source/cs_cl_print.o Source/cs_pvec.o Source/cs_dl_pvec.o Source/cs_ci_pvec.o Source/cs_cl_pvec.o Source/cs_qr.o Source/cs_dl_qr.o Source/cs_ci_qr.o Source/cs_cl_qr.o Source/cs_qrsol.o Source/cs_dl_qrsol.o Source/cs_ci_qrsol.o Source/cs_cl_qrsol.o Source/cs_randperm.o Source/cs_dl_randperm.o Source/cs_ci_randperm.o Source/cs_cl_randperm.o Source/cs_reach.o Source/cs_dl_reach.o Source/cs_ci_reach.o Source/cs_cl_reach.o Source/cs_scatter.o Source/cs_dl_scatter.o Source/cs_ci_scatter.o Source/cs_cl_scatter.o Source/cs_scc.o Source/cs_dl_scc.o Source/cs_ci_scc.o Source/cs_cl_scc.o Source/cs_schol.o Source/cs_dl_schol.o Source/cs_ci_schol.o Source/cs_cl_schol.o Source/cs_spsolve.o Source/cs_dl_spsolve.o Source/cs_ci_spsolve.o Source/cs_cl_spsolve.o Source/cs_sqr.o Source/cs_dl_sqr.o Source/cs_ci_sqr.o Source/cs_cl_sqr.o Source/cs_symperm.o Source/cs_dl_symperm.o Source/cs_ci_symperm.o Source/cs_cl_symperm.o Source/cs_tdfs.o Source/cs_dl_tdfs.o Source/cs_ci_tdfs.o Source/cs_cl_tdfs.o Source/cs_transpose.o Source/cs_dl_transpose.o Source/cs_ci_transpose.o Source/cs_cl_transpose.o Source/cs_updown.o Source/cs_dl_updown.o Source/cs_ci_updown.o Source/cs_cl_updown.o Source/cs_usolve.o Source/cs_dl_usolve.o Source/cs_ci_usolve.o Source/cs_cl_usolve.o Source/cs_util.o Source/cs_dl_util.o Source/cs_ci_util.o Source/cs_cl_util.o Source/cs_utsolve.o Source/cs_dl_utsolve.o Source/cs_ci_utsolve.o Source/cs_cl_utsolve.o Source/cxsparse_version.o ranlib CXSparse.a make[4]: Leaving directory '/tmp/Rtmp3bsSDE/R.INSTALL45ac5ce250fd/Matrix/src/SuiteSparse/CXSparse' cd SuiteSparse/SuiteSparse_config && make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/builddir/build/BUILD/R-4.5.2/include\" -I\"/builddir/build/BUILD/R-4.5.2/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" make[4]: Entering directory '/tmp/Rtmp3bsSDE/R.INSTALL45ac5ce250fd/Matrix/src/SuiteSparse/SuiteSparse_config' gcc -I/usr/local/include -I"/builddir/build/BUILD/R-4.5.2/include" -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fpic -fvisibility=hidden -c SuiteSparse_config.c -o SuiteSparse_config.o rm -f SuiteSparse_config.a ar -cr SuiteSparse_config.a SuiteSparse_config.o ranlib SuiteSparse_config.a make[4]: Leaving directory '/tmp/Rtmp3bsSDE/R.INSTALL45ac5ce250fd/Matrix/src/SuiteSparse/SuiteSparse_config' gcc -shared -L/builddir/build/BUILD/R-4.5.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o Matrix.so Csparse.o attrib.o bind.o cholmod-common.o cholmod-etc.o coerce.o cs-etc.o dense.o determinant.o expm.o factor.o idz.o init.o kappa.o matmult.o objects.o perm.o solve.o sparse.o subassign.o subscript.o utils-R.o utils.o validity.o vector.o SuiteSparse/CHOLMOD/CHOLMOD.a SuiteSparse/CCOLAMD/CCOLAMD.a SuiteSparse/CAMD/CAMD.a SuiteSparse/COLAMD/COLAMD.a SuiteSparse/AMD/AMD.a SuiteSparse/CXSparse/CXSparse.a SuiteSparse/SuiteSparse_config/SuiteSparse_config.a -lflexiblas -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-4.5.2/lib -lR lto-wrapper: warning: using serial compilation of 31 LTRANS jobs make[3]: Leaving directory '/tmp/Rtmp3bsSDE/R.INSTALL45ac5ce250fd/Matrix/src' installing to /builddir/build/BUILD/R-4.5.2/library/Matrix/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'chol2inv' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix' Creating a generic function for 'diag' from package 'base' in package 'Matrix' Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix' Creating a generic function for 'drop' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csc","RsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.coo","RsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","sparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","sparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","sparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"Matrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"Matrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"Matrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"graphAM","TsparseMatrix"': no definition for class "graphAM" in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","RsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","TsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","sparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph" in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL" in method for 'coerce' with signature '"Matrix","graphNEL"': no definition for class "graphNEL" in method for 'coerce' with signature '"Matrix","graph"': no definition for class "graph" Creating a generic function for 'colSums' from package 'base' in package 'Matrix' Creating a generic function for 'colMeans' from package 'base' in package 'Matrix' Creating a generic function for 'rowSums' from package 'base' in package 'Matrix' Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix' Creating a generic function for 'diag<-' from package 'base' in package 'Matrix' Creating a generic function for 'unname' from package 'base' in package 'Matrix' Creating a generic function for 'norm' from package 'base' in package 'Matrix' Creating a generic function for 'rcond' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'rcond' from package 'base' in package 'Matrix' Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix' Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix' Creating a generic function for 'qr.R' from package 'base' in package 'Matrix' Creating a generic function for 'qr.X' from package 'base' in package 'Matrix' Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix' Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix' Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix' Creating a generic function for 'toeplitz' from 'stats' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix' Creating a generic function for 'which' from package 'base' in package 'Matrix' ** help *** installing help indices converting help for package 'Matrix' finding HTML links ... done BunchKaufman-class html BunchKaufman-methods html CAex html CHMfactor-class html Cholesky-class html Cholesky-methods html CsparseMatrix-class html Diagonal html Hilbert html KNex html KhatriRao html Matrix-class html Matrix-defunct html Matrix-deprecated html Matrix-notyet html Matrix html MatrixClass html MatrixFactorization-class html RsparseMatrix-class html Schur-class html Schur-methods html TsparseMatrix-class html USCounties html abIndex-class html abIseq html all.equal-methods html asUniqueT html band-methods html bandSparse html bdiag html boolmatmult-methods html cbind2-methods html chol-methods html chol2inv-methods html coerce-methods-SparseM html coerce-methods-graph html colSums-methods html condest html dMatrix-class html ddenseMatrix-class html ddiMatrix-class html denseLU-class html denseMatrix-class html dgCMatrix-class html dgRMatrix-class html dgTMatrix-class html dgeMatrix-class html diagU2N html diagonalMatrix-class html dimScale html dmperm html dpoMatrix-class html drop0 html dsCMatrix-class html dsRMatrix-class html dsparseMatrix-class html dsyMatrix-class html dtCMatrix-class html dtRMatrix-class-sparse html dtpMatrix-class html dtrMatrix-class-dense html expand-methods html expm-methods html externalFormats html facmul-methods html fastMisc html forceSymmetric-methods html formatSparseM html generalMatrix-class html image-methods html indMatrix-class html index-class html invertPerm html is.na-methods html is.null.DN html isSymmetric-methods html isTriangular-methods html kronecker-methods html ldenseMatrix-class html ldiMatrix-class html lgeMatrix-class html lsparseMatrix-class html lsyMatrix-class html ltrMatrix-class html lu-methods html mat2triplet html matmult-methods html nMatrix-class html ndenseMatrix-class html nearPD html ngeMatrix-class html nnzero-methods html norm-methods html nsparseMatrix-class html nsyMatrix-class html ntrMatrix-class html pMatrix-class html pack-methods html packedMatrix-class html printSpMatrix html qr-methods html rankMatrix html rcond-methods html rep2abI html rleDiff-class html rsparsematrix html solve-methods html spMatrix html sparse.model.matrix html sparseLU-class html sparseMatrix-class html sparseMatrix html sparseQR-class html sparseVector-class html sparseVector html subassign-methods html subscript-methods html symmetricMatrix-class html symmpart-methods html triangularMatrix-class html unpackedMatrix-class html updown-methods html wrld_1deg html ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Matrix) Making 'packages.html' ... done begin installing recommended package nlme * installing *source* package 'nlme' ... ** this is package 'nlme' version '3.1-168' ** package 'nlme' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (GCC) 11.5.0 20240719 (Red Hat 11.5.0-14)' using Fortran compiler: 'GNU Fortran (GCC) 11.5.0 20240719 (Red Hat 11.5.0-14)' make[3]: Entering directory '/tmp/Rtmp0PJqhS/R.INSTALL4c277c47a15d/nlme/src' gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c chol.f -o chol.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c corStruct.c -o corStruct.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gnls.c -o gnls.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c matrix.c -o matrix.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c nlOptimizer.c -o nlOptimizer.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c nlme.c -o nlme.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c nlmefit.c -o nlmefit.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pdMat.c -o pdMat.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pythag.c -o pythag.o gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c rs.f -o rs.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gcc -shared -L/builddir/build/BUILD/R-4.5.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o pythag.o rs.o -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-4.5.2/lib -lR make[3]: Leaving directory '/tmp/Rtmp0PJqhS/R.INSTALL4c277c47a15d/nlme/src' installing to /builddir/build/BUILD/R-4.5.2/library/nlme/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'nlme' finding HTML links ... done ACF html ACF.gls html ACF.lme html Alfalfa html Assay html BodyWeight html Cefamandole html Coef html Covariate html Covariate.varFunc html Dialyzer html Dim html Dim.corSpatial html Dim.corStruct html Dim.pdMat html Earthquake html Extract.pdMat html Fatigue html Gasoline html Glucose html Glucose2 html Gun html IGF html Initialize html Initialize.corStruct html Initialize.glsStruct html Initialize.lmeStruct html Initialize.reStruct html Initialize.varFunc html LDEsysMat html Machines html MathAchSchool html MathAchieve html Matrix html Matrix.pdMat html Matrix.reStruct html Meat html Milk html Muscle html Names html Names.formula html Names.pdBlocked html Names.pdMat html Names.reStruct html Nitrendipene html Oats html Orthodont html Ovary html Oxboys html Oxide html PBG html Phenobarb html Pixel html Quinidine html Rail html RatPupWeight html Relaxin html Remifentanil html Soybean html Spruce html Tetracycline1 html Tetracycline2 html VarCorr html Variogram html Variogram.corExp html Variogram.corGaus html Variogram.corLin html Variogram.corRatio html Variogram.corSpatial html Variogram.corSpher html Variogram.default html Variogram.gls html Variogram.lme html Wafer html Wheat html Wheat2 html allCoef html anova.gls html anova.lme html as.matrix.corStruct html as.matrix.pdMat html as.matrix.reStruct html asOneFormula html asTable html augPred html balancedGrouped html bdf html coef.corStruct html coef.gnls html coef.lmList html coef.lme html coef.modelStruct html coef.pdMat html coef.reStruct html coef.varFunc html collapse html collapse.groupedData html compareFits html comparePred html corAR1 html corARMA html corCAR1 html corClasses html corCompSymm html corExp html corFactor html corFactor.corStruct html corGaus html corLin html corMatrix html corMatrix.corStruct html corMatrix.pdMat html corMatrix.reStruct html corNatural html corRatio html corSpatial html corSpher html corSymm html ergoStool html fdHess html fitted.glsStruct html fitted.gnlsStruct html fitted.lmList html fitted.lme html fitted.lmeStruct html fitted.nlmeStruct html fixed.effects html fixef.lmList html formula.pdBlocked html formula.pdMat html formula.reStruct html gapply html getCovariate html getCovariate.corStruct html getCovariate.data.frame html getCovariate.varFunc html getCovariateFormula html getData html getData.gls html getData.lmList html getData.lme html getGroups html getGroups.corStruct html getGroups.data.frame html getGroups.gls html getGroups.lmList html getGroups.lme html getGroups.varFunc html getGroupsFormula html getResponse html getResponseFormula html getVarCov html gls-internal html gls html glsControl html glsObject html glsStruct html gnls html gnlsControl html gnlsObject html gnlsStruct html groupedData html gsummary html intervals html intervals.gls html intervals.lmList html intervals.lme html isBalanced html isInitialized html lmList html lmList.groupedData html lme html lme.groupedData html lme.lmList html lmeControl html lmeObject html lmeStruct html logDet html logDet.corStruct html logDet.pdMat html logDet.reStruct html logLik.corStruct html logLik.glsStruct html logLik.gnls html logLik.gnlsStruct html logLik.lmList html logLik.lme html logLik.lmeStruct html logLik.reStruct html logLik.varFunc html model.matrix.reStruct html needUpdate html needUpdate.modelStruct html nlme-deprecated html nlme html nlme.nlsList html nlmeControl html nlmeObject html nlmeStruct html nlsList html nlsList.selfStart html pairs.compareFits html pairs.lmList html pairs.lme html pdBlocked html pdClasses html pdCompSymm html pdConstruct html pdConstruct.pdBlocked html pdDiag html pdFactor html pdFactor.reStruct html pdIdent html pdLogChol html pdMat html pdMatrix html pdMatrix.reStruct html pdNatural html pdSymm html phenoModel html plot.ACF html plot.Variogram html plot.augPred html plot.compareFits html plot.gls html plot.intervals.lmList html plot.lmList html plot.lme html plot.nffGroupedData html plot.nfnGroupedData html plot.nmGroupedData html plot.ranef.lmList html plot.ranef.lme html pooledSD html predict.gls html predict.gnls html predict.lmList html predict.lme html predict.nlme html print.summary.pdMat html print.varFunc html qqnorm.gls html qqnorm.lme html quinModel html random.effects html ranef.lmList html ranef.lme html reStruct html recalc html recalc.corStruct html recalc.modelStruct html recalc.reStruct html recalc.varFunc html residuals.gls html residuals.glsStruct html residuals.gnlsStruct html residuals.lmList html residuals.lme html residuals.lmeStruct html residuals.nlmeStruct html simulate.lme html solve.pdMat html solve.reStruct html splitFormula html summary.corStruct html summary.gls html summary.lmList html summary.lme html summary.modelStruct html summary.nlsList html summary.pdMat html summary.varFunc html update.modelStruct html update.varFunc html varClasses html varComb html varConstPower html varConstProp html varExp html varFixed html varFunc html varIdent html varPower html varWeights html varWeights.glsStruct html varWeights.lmeStruct html ** building package indices ** testing if installed package can be loaded * DONE (nlme) Making 'packages.html' ... done begin installing recommended package survival * installing *source* package 'survival' ... ** this is package 'survival' version '3.8-3' ** package 'survival' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (GCC) 11.5.0 20240719 (Red Hat 11.5.0-14)' make[3]: Entering directory '/tmp/RtmpuEMdIG/R.INSTALL4c7a1d2ac9f4/survival/src' gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c agexact.c -o agexact.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c agfit4.c -o agfit4.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c agfit5.c -o agfit5.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c agmart.c -o agmart.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c agmart3.c -o agmart3.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c agscore2.c -o agscore2.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c agscore3.c -o agscore3.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c agsurv4.c -o agsurv4.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c agsurv5.c -o agsurv5.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cdecomp.c -o cdecomp.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c chinv2.c -o chinv2.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c chinv3.c -o chinv3.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cholesky2.c -o cholesky2.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cholesky3.c -o cholesky3.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cholesky5.c -o cholesky5.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c chsolve2.c -o chsolve2.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c chsolve3.c -o chsolve3.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c chsolve5.c -o chsolve5.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c collapse.c -o collapse.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c concordance1.c -o concordance1.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c concordance3.c -o concordance3.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c concordance5.c -o concordance5.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cox_Rcallback.c -o cox_Rcallback.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxcount1.c -o coxcount1.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxdetail.c -o coxdetail.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxexact.c -o coxexact.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxfit5.c -o coxfit5.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxfit6.c -o coxfit6.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxmart.c -o coxmart.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxmart2.c -o coxmart2.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxph_wtest.c -o coxph_wtest.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxsafe.c -o coxsafe.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxscho.c -o coxscho.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxscore2.c -o coxscore2.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxsurv1.c -o coxsurv1.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxsurv2.c -o coxsurv2.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxsurv3.c -o coxsurv3.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxsurv4.c -o coxsurv4.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dmatrix.c -o dmatrix.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c doloop.c -o doloop.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fastkm.c -o fastkm.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c finegray.c -o finegray.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gchol.c -o gchol.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c multicheck.c -o multicheck.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c norisk.c -o norisk.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pyears1.c -o pyears1.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pyears2.c -o pyears2.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pyears3b.c -o pyears3b.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pystep.c -o pystep.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c residcsum.c -o residcsum.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survConcordance.c -o survConcordance.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survdiff2.c -o survdiff2.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survfit4.c -o survfit4.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survfitaj.c -o survfitaj.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survfitkm.c -o survfitkm.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survfitresid.c -o survfitresid.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survpenal.c -o survpenal.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survreg6.c -o survreg6.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survreg7.c -o survreg7.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survregc1.c -o survregc1.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survregc2.c -o survregc2.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c survsplit.c -o survsplit.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c tmerge.c -o tmerge.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c twoclust.c -o twoclust.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c zph1.c -o zph1.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c zph2.c -o zph2.o gcc -shared -L/builddir/build/BUILD/R-4.5.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart3.o agscore2.o agscore3.o agsurv4.o agsurv5.o cdecomp.o chinv2.o chinv3.o cholesky2.o cholesky3.o cholesky5.o chsolve2.o chsolve3.o chsolve5.o collapse.o concordance1.o concordance3.o concordance5.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore2.o coxsurv1.o coxsurv2.o coxsurv3.o coxsurv4.o dmatrix.o doloop.o fastkm.o finegray.o gchol.o init.o multicheck.o norisk.o pyears1.o pyears2.o pyears3b.o pystep.o residcsum.o survConcordance.o survdiff2.o survfit4.o survfitaj.o survfitkm.o survfitresid.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o twoclust.o zph1.o zph2.o -L/builddir/build/BUILD/R-4.5.2/lib -lR lto-wrapper: warning: using serial compilation of 3 LTRANS jobs make[3]: Leaving directory '/tmp/RtmpuEMdIG/R.INSTALL4c7a1d2ac9f4/survival/src' installing to /builddir/build/BUILD/R-4.5.2/library/survival/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'survival' finding HTML links ... done Surv html Surv2 html Surv2data html Survmethods html aareg html aeqSurv html aggregate.survfit html agreg.fit html aml html anova.coxph html attrassign html basehaz html bladder html blogit html brier html cch html cgd html cgd0 html cipoisson html clogit html cluster html colon html concordance html concordancefit html cox.zph html coxph html coxph.control html coxph.detail html coxph.object html coxph.wtest html coxphms.object html coxsurv.fit html diabetic html dsurvreg html finegray html flchain html frailty html gbsg html heart html hoel html is.ratetable html kidney html levels.Surv html lines.survfit html logLik.coxph html logan html lung html mgus html mgus2 html model.frame.coxph html model.matrix.coxph html myeloid html myeloma html nafld html neardate html nsk html nwtco html ovarian html pbc html pbcseq html plot.aareg html plot.cox.zph html plot.survfit html predict.coxph html predict.survreg html print.aareg html print.summary.coxph html print.summary.survexp html print.summary.survfit html print.survfit html pseudo html pspline html pyears html quantile.survfit html ratetable html ratetableDate html rats html rats2 html reliability html residuals.coxph html residuals.survfit html residuals.survreg html retinopathy html rhDNase html ridge html rotterdam html royston html rttright html solder html stanford2 html statefig html strata html summary.aareg html summary.coxph html summary.pyears html summary.survexp html summary.survfit html survSplit html survcheck html survcondense html survdiff html survexp html survexp.fit html survexp.object html survexp.us html survfit html survfit.coxph html survfit.formula html survfit.matrix html survfit.object html survfit0 html survfitcoxph.fit html survival-deprecated html survival-internal html survobrien html survreg html survreg.control html survreg.distributions html survreg.object html survregDtest html tcut html timeline html tmerge html tobin html transplant html udca html untangle.specials html uspop2 html vcov.coxph html veteran html xtfrm.Surv html yates html yates_setup html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (survival) Making 'packages.html' ... done begin installing recommended package boot * installing *source* package 'boot' ... ** this is package 'boot' version '1.3-32' ** package 'boot' successfully unpacked and MD5 sums checked ** using non-staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'boot' finding HTML links ... done EEF.profile html Imp.Estimates html abc.ci html acme html aids html aircondit html amis html aml html beaver html bigcity html boot-practicals html boot html boot.array html boot.ci html brambles html breslow html calcium html cane html capability html catsM html cav html cd4 html cd4.nested html censboot html channing html claridge html cloth html co.transfer html coal html control html corr html cum3 html cv.glm html darwin html dogs html downs.bc html ducks html empinf html envelope html exp.tilt html fir html freq.array html frets html glm.diag html glm.diag.plots html gravity html hirose html imp.weights html inv.logit html islay html jack.after.boot html k3.linear html linear.approx html lines.saddle.distn html logit html manaus html melanoma html motor html neuro html nitrofen html nodal html norm.ci html nuclear html paulsen html plot.boot html poisons html polar html print.boot html print.bootci html print.saddle.distn html print.simplex html remission html saddle html saddle.distn html saddle.distn.object html salinity html simplex html simplex.object html smooth.f html sunspot html survival html tau html tilt.boot html tsboot html tuna html urine html var.linear html wool html ** building package indices ** testing if installed package can be loaded * DONE (boot) Making 'packages.html' ... done begin installing recommended package cluster * installing *source* package 'cluster' ... ** this is package 'cluster' version '2.1.8.1' ** package 'cluster' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (GCC) 11.5.0 20240719 (Red Hat 11.5.0-14)' make[3]: Entering directory '/tmp/RtmpYk48gp/R.INSTALL4d9b6f0024a6/cluster/src' gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c clara.c -o clara.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c daisy.c -o daisy.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dysta.c -o dysta.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fanny.c -o fanny.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mona.c -o mona.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pam.c -o pam.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sildist.c -o sildist.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c spannel.c -o spannel.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c twins.c -o twins.o gcc -shared -L/builddir/build/BUILD/R-4.5.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -L/builddir/build/BUILD/R-4.5.2/lib -lR make[3]: Leaving directory '/tmp/RtmpYk48gp/R.INSTALL4d9b6f0024a6/cluster/src' installing to /builddir/build/BUILD/R-4.5.2/library/cluster/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cluster' finding HTML links ... done agnes html agnes.object html agriculture html animals html bannerplot html chorSub html clara html clara.object html clusGap html clusplot.default html clusplot.partition html cluster-internal html coef.hclust html daisy html diana html dissimilarity.object html ellipsoidhull html fanny html fanny.object html flower html lower.to.upper.tri.inds html medoids html mona html mona.object html pam html pam.object html partition.object html plantTraits html plot.agnes html plot.diana html plot.mona html plot.partition html pltree html pluton html predict.ellipsoid html print.agnes html print.clara html print.diana html print.dissimilarity html print.fanny html print.mona html print.pam html ruspini html silhouette html sizeDiss html summary.agnes html summary.clara html summary.diana html summary.mona html summary.pam html twins.object html volume.ellipsoid html votes.repub html xclara html ** building package indices ** testing if installed package can be loaded * DONE (cluster) Making 'packages.html' ... done begin installing recommended package codetools * installing *source* package 'codetools' ... ** this is package 'codetools' version '0.2-20' ** package 'codetools' successfully unpacked and MD5 sums checked ** using non-staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'codetools' finding HTML links ... done checkUsage html codetools html findGlobals html showTree html ** building package indices ** testing if installed package can be loaded * DONE (codetools) Making 'packages.html' ... done begin installing recommended package foreign * installing *source* package 'foreign' ... ** this is package 'foreign' version '0.8-90' ** package 'foreign' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (GCC) 11.5.0 20240719 (Red Hat 11.5.0-14)' make[3]: Entering directory '/tmp/Rtmpo4zdUC/R.INSTALL4e0bc20d96f/foreign/src' gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c R_systat.c -o R_systat.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Rdbfread.c -o Rdbfread.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Rdbfwrite.c -o Rdbfwrite.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c SASxport.c -o SASxport.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c avl.c -o avl.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dbfopen.c -o dbfopen.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c file-handle.c -o file-handle.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c format.c -o format.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c minitab.c -o minitab.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pfm-read.c -o pfm-read.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sfm-read.c -o sfm-read.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c spss.c -o spss.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c stataread.c -o stataread.o gcc -shared -L/builddir/build/BUILD/R-4.5.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/builddir/build/BUILD/R-4.5.2/lib -lR lto-wrapper: warning: using serial compilation of 2 LTRANS jobs make[3]: Leaving directory '/tmp/Rtmpo4zdUC/R.INSTALL4e0bc20d96f/foreign/src' installing to /builddir/build/BUILD/R-4.5.2/library/foreign/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'foreign' finding HTML links ... done lookup.xport html read.S html read.arff html read.dbf html read.dta html read.epiinfo html read.mtp html read.octave html read.spss html read.ssd html read.systat html read.xport html write.arff html write.dbf html write.dta html write.foreign html ** building package indices ** testing if installed package can be loaded * DONE (foreign) Making 'packages.html' ... done begin installing recommended package KernSmooth * installing *source* package 'KernSmooth' ... ** this is package 'KernSmooth' version '2.23-26' ** package 'KernSmooth' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (GCC) 11.5.0 20240719 (Red Hat 11.5.0-14)' using Fortran compiler: 'GNU Fortran (GCC) 11.5.0 20240719 (Red Hat 11.5.0-14)' make[3]: Entering directory '/tmp/RtmpuIyZvD/R.INSTALL4e694a42a832/KernSmooth/src' gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c blkest.f -o blkest.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c cp.f -o cp.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c dgedi.f -o dgedi.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c dgefa.f -o dgefa.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c dgesl.f -o dgesl.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c linbin.f -o linbin.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c linbin2D.f -o linbin2D.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c locpoly.f -o locpoly.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c rlbin.f -o rlbin.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c sdiag.f -o sdiag.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -c sstdiag.f -o sstdiag.o f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gcc -shared -L/builddir/build/BUILD/R-4.5.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -lflexiblas -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-4.5.2/lib -lR make[3]: Leaving directory '/tmp/RtmpuIyZvD/R.INSTALL4e694a42a832/KernSmooth/src' installing to /builddir/build/BUILD/R-4.5.2/library/KernSmooth/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'KernSmooth' finding HTML links ... done bkde html bkde2D html bkfe html dpih html dpik html dpill html locpoly html ** building package indices ** testing if installed package can be loaded * DONE (KernSmooth) Making 'packages.html' ... done begin installing recommended package rpart * installing *source* package 'rpart' ... ** this is package 'rpart' version '4.1.24' ** package 'rpart' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (GCC) 11.5.0 20240719 (Red Hat 11.5.0-14)' make[3]: Entering directory '/tmp/RtmpUhue4B/R.INSTALL4ebf63ff3416/rpart/src' gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c anova.c -o anova.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c anovapred.c -o anovapred.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c branch.c -o branch.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bsplit.c -o bsplit.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c choose_surg.c -o choose_surg.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fix_cp.c -o fix_cp.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c free_tree.c -o free_tree.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gini.c -o gini.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c graycode.c -o graycode.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c insert_split.c -o insert_split.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c make_cp_list.c -o make_cp_list.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c make_cp_table.c -o make_cp_table.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mysort.c -o mysort.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c nodesplit.c -o nodesplit.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c partition.c -o partition.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c poisson.c -o poisson.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pred_rpart.c -o pred_rpart.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c print_tree.c -o print_tree.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rpart.c -o rpart.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rpart_callback.c -o rpart_callback.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rpartexp.c -o rpartexp.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rpartexp2.c -o rpartexp2.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rpcountup.c -o rpcountup.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rpmatrix.c -o rpmatrix.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rundown.c -o rundown.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rundown2.c -o rundown2.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c surrogate.c -o surrogate.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c usersplit.c -o usersplit.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c xpred.c -o xpred.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c xval.c -o xval.o gcc -shared -L/builddir/build/BUILD/R-4.5.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/builddir/build/BUILD/R-4.5.2/lib -lR make[3]: Leaving directory '/tmp/RtmpUhue4B/R.INSTALL4ebf63ff3416/rpart/src' installing to /builddir/build/BUILD/R-4.5.2/library/rpart/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rpart' finding HTML links ... done car.test.frame html car90 html cu.summary html kyphosis html labels.rpart html meanvar.rpart html na.rpart html path.rpart html plot.rpart html plotcp html post.rpart html predict.rpart html print.rpart html printcp html prune.rpart html residuals.rpart html rpart-internal html rpart html rpart.control html rpart.exp html rpart.object html rsq.rpart html snip.rpart html solder.balance html stagec html summary.rpart html text.rpart html xpred.rpart html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (rpart) Making 'packages.html' ... done begin installing recommended package class * installing *source* package 'class' ... ** this is package 'class' version '7.3-23' ** package 'class' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (GCC) 11.5.0 20240719 (Red Hat 11.5.0-14)' make[3]: Entering directory '/tmp/RtmptniwgP/R.INSTALL4f4d59d83d7c/class/src' gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c class.c -o class.o gcc -shared -L/builddir/build/BUILD/R-4.5.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o class.so class.o -L/builddir/build/BUILD/R-4.5.2/lib -lR make[3]: Leaving directory '/tmp/RtmptniwgP/R.INSTALL4f4d59d83d7c/class/src' installing to /builddir/build/BUILD/R-4.5.2/library/class/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'class' finding HTML links ... done SOM html batchSOM html condense html knn html knn.cv html knn1 html lvq1 html lvq2 html lvq3 html lvqinit html lvqtest html multiedit html olvq1 html reduce.nn html somgrid html ** building package indices ** testing if installed package can be loaded * DONE (class) Making 'packages.html' ... done begin installing recommended package nnet * installing *source* package 'nnet' ... ** this is package 'nnet' version '7.3-20' ** package 'nnet' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (GCC) 11.5.0 20240719 (Red Hat 11.5.0-14)' make[3]: Entering directory '/tmp/RtmpnBV19Z/R.INSTALL4f8148840784/nnet/src' gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c nnet.c -o nnet.o gcc -shared -L/builddir/build/BUILD/R-4.5.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o nnet.so nnet.o -L/builddir/build/BUILD/R-4.5.2/lib -lR make[3]: Leaving directory '/tmp/RtmpnBV19Z/R.INSTALL4f8148840784/nnet/src' installing to /builddir/build/BUILD/R-4.5.2/library/nnet/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'nnet' finding HTML links ... done class.ind html multinom html nnet.Hess html nnet html predict.nnet html which.is.max html ** building package indices ** testing if installed package can be loaded * DONE (nnet) Making 'packages.html' ... done begin installing recommended package spatial * installing *source* package 'spatial' ... ** this is package 'spatial' version '7.3-18' ** package 'spatial' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (GCC) 11.5.0 20240719 (Red Hat 11.5.0-14)' make[3]: Entering directory '/tmp/RtmpPhXViQ/R.INSTALL4fb5491d0217/spatial/src' gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c krc.c -o krc.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pps.c -o pps.o gcc -shared -L/builddir/build/BUILD/R-4.5.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o spatial.so init.o krc.o pps.o -L/builddir/build/BUILD/R-4.5.2/lib -lR make[3]: Leaving directory '/tmp/RtmpPhXViQ/R.INSTALL4fb5491d0217/spatial/src' installing to /builddir/build/BUILD/R-4.5.2/library/spatial/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'spatial' finding HTML links ... done Kaver html Kenvl html Kfn html Psim html SSI html Strauss html anova.trls html correlogram html expcov html ppgetregion html ppinit html pplik html ppregion html predict.trls html prmat html semat html surf.gls html surf.ls html trls.influence html trmat html variogram html ** building package indices ** testing if installed package can be loaded * DONE (spatial) Making 'packages.html' ... done begin installing recommended package mgcv * installing *source* package 'mgcv' ... ** this is package 'mgcv' version '1.9-3' ** package 'mgcv' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (GCC) 11.5.0 20240719 (Red Hat 11.5.0-14)' make[3]: Entering directory '/tmp/Rtmp0sJqYJ/R.INSTALL4fef2454941f/mgcv/src' gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c coxph.c -o coxph.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c davies.c -o davies.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c discrete.c -o discrete.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gdi.c -o gdi.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c magic.c -o magic.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mat.c -o mat.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c matrix.c -o matrix.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mgcv.c -o mgcv.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c misc.c -o misc.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mvn.c -o mvn.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ncv.c -o ncv.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qp.c -o qp.o qp.c: In function 'QPCLS': qp.c:429:10: warning: unused variable 'x' [-Wunused-variable] 429 | double x; | ^ gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c soap.c -o soap.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sparse-smooth.c -o sparse-smooth.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sparse.c -o sparse.o gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c tprs.c -o tprs.o gcc -shared -L/builddir/build/BUILD/R-4.5.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o mgcv.so coxph.o davies.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o ncv.o qp.o soap.o sparse-smooth.o sparse.o tprs.o -lflexiblas -lgfortran -lm -lquadmath -fopenmp -L/builddir/build/BUILD/R-4.5.2/lib -lR lto-wrapper: warning: using serial compilation of 6 LTRANS jobs make[3]: Leaving directory '/tmp/Rtmp0sJqYJ/R.INSTALL4fef2454941f/mgcv/src' installing to /builddir/build/BUILD/R-4.5.2/library/mgcv/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'mgcv' finding HTML links ... done Beta html FFdes html NCV html Predict.matrix html Predict.matrix.cr.smooth html Predict.matrix.soap.film html Rrank html Sl.initial.repara html Sl.repara html Sl.setup html Tweedie html XWXd html anova.gam html bam html bam.update html bandchol html blas.thread.test html bug.reports.mgcv html cSplineDes html chol.down html choose.k html clog html cnorm html columb html concurvity html coxph html coxpht html cpois html dDeta html dpnorm html exclude.too.far html extract.lme.cov html factor.smooth html family.mgcv html fix.family.link html fixDependence html formXtViX html formula.gam html fs.test html full.score html gam html gam.check html gam.control html gam.convergence html gam.fit html gam.fit3 html gam.fit5.post.proc html gam.mh html gam.models html gam.outer html gam.reparam html gam.scale html gam.selection html gam.side html gam.vcomp html gam2objective html gamObject html gamSim html gamlss.etamu html gamlss.gH html gamm html gammals html gaulss html get.var html gevlss html gfam html ginla html gumbls html identifiability html in.out html inSide html influence.gam html initial.sp html interpret.gam html jagam html k.check html ldTweedie html ldetS html linear.functional.terms html logLik.gam html lp html ls.size html magic html magic.post.proc html mchol html mgcv-FAQ html mgcv-package html mgcv-parallel html mini.roots html missing.data html model.matrix.gam html mono.con html mroot html multinom html mvn html negbin html new.name html notExp html notExp2 html null.space.dimension html ocat html one.se.rule html pcls html pdIdnot html pdTens html pen.edf html place.knots html plot.gam html polys.plot html predict.bam html predict.gam html print.gam html psum.chisq html qq.gam html rTweedie html random.effects html residuals.gam html rig html rmvn html s html scat html sdiag html shash html single.index html slanczos html smooth.construct html smooth.construct.ad.smooth.spec html smooth.construct.bs.smooth.spec html smooth.construct.cr.smooth.spec html smooth.construct.ds.smooth.spec html smooth.construct.fs.smooth.spec html smooth.construct.gp.smooth.spec html smooth.construct.mrf.smooth.spec html smooth.construct.ps.smooth.spec html smooth.construct.re.smooth.spec html smooth.construct.so.smooth.spec html smooth.construct.sos.smooth.spec html smooth.construct.sz.smooth.spec html smooth.construct.t2.smooth.spec html smooth.construct.tensor.smooth.spec html smooth.construct.tp.smooth.spec html smooth.info html smooth.terms html smooth2random html smoothCon html sp.vcov html spasm.construct html step.gam html summary.gam html t2 html te html tensor.prod.model.matrix html totalPenaltySpace html trichol html trind.generator html twlss html uniquecombs html vcov.gam html vis.gam html ziP html ziplss html ** building package indices ** testing if installed package can be loaded * DONE (mgcv) Making 'packages.html' ... done make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/Recommended' make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library/Recommended' make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library' building/updating vignettes for package 'grid' ... building/updating vignettes for package 'parallel' ... building/updating vignettes for package 'utils' ... building/updating vignettes for package 'stats' ... make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library' make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2' configuring Java ... Java interpreter : /usr/bin/java Java version : 17.0.17 Java home path : /usr/lib/jvm/jre Java compiler : /usr/bin/javac Java headers gen.: Java archive tool: /usr/bin/jar trying to compile and link a JNI program detected JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm using C compiler: 'gcc (GCC) 11.5.0 20240719 (Red Hat 11.5.0-14)' make[2]: Entering directory '/tmp/Rjavareconf.6LzdrI' gcc -I"/builddir/build/BUILD/R-4.5.2/include" -DNDEBUG -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c conftest.c -o conftest.o gcc -shared -L/builddir/build/BUILD/R-4.5.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o conftest.so conftest.o -L/usr/lib/jvm/jre/lib/server -ljvm -L/builddir/build/BUILD/R-4.5.2/lib -lR make[2]: Leaving directory '/tmp/Rjavareconf.6LzdrI' JAVA_HOME : /usr/lib/jvm/jre Java library path: $(JAVA_HOME)/lib/server JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm Updating Java configuration in /builddir/build/BUILD/R-4.5.2 Done. make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2' + cd src/nmath/standalone + make (cd ../../include; make Rmath.h) make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/include' make[1]: 'Rmath.h' is up to date. make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/include' Copying source files make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/nmath/standalone' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making qnbinom_mu.d from qnbinom_mu.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c making std_unif.d from std_unif.c make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/nmath/standalone' make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mlutils.c -o mlutils.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c d1mach.c -o d1mach.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c i1mach.c -o i1mach.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fmax2.c -o fmax2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fmin2.c -o fmin2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fprec.c -o fprec.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fround.c -o fround.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ftrunc.c -o ftrunc.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sign.c -o sign.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fsign.c -o fsign.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c imax2.c -o imax2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c imin2.c -o imin2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c chebyshev.c -o chebyshev.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c log1p.c -o log1p.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lgammacor.c -o lgammacor.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gammalims.c -o gammalims.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c stirlerr.c -o stirlerr.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bd0.c -o bd0.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gamma.c -o gamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lgamma.c -o lgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gamma_cody.c -o gamma_cody.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c beta.c -o beta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lbeta.c -o lbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c polygamma.c -o polygamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cospi.c -o cospi.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_i.c -o bessel_i.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_j.c -o bessel_j.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_k.c -o bessel_k.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_y.c -o bessel_y.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c choose.c -o choose.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c snorm.c -o snorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sexp.c -o sexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dgamma.c -o dgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pgamma.c -o pgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qgamma.c -o qgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rgamma.c -o rgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dbeta.c -o dbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pbeta.c -o pbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qbeta.c -o qbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rbeta.c -o rbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dunif.c -o dunif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c punif.c -o punif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qunif.c -o qunif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c runif.c -o runif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnorm.c -o dnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnorm.c -o pnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnorm.c -o qnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnorm.c -o rnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dlnorm.c -o dlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plnorm.c -o plnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qlnorm.c -o qlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rlnorm.c -o rlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c df.c -o df.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pf.c -o pf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qf.c -o qf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rf.c -o rf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnf.c -o dnf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dt.c -o dt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pt.c -o pt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qt.c -o qt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rt.c -o rt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnt.c -o dnt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dchisq.c -o dchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pchisq.c -o pchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qchisq.c -o qchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rchisq.c -o rchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnchisq.c -o rnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dbinom.c -o dbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pbinom.c -o pbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qbinom.c -o qbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rbinom.c -o rbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rmultinom.c -o rmultinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dcauchy.c -o dcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pcauchy.c -o pcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qcauchy.c -o qcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rcauchy.c -o rcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dexp.c -o dexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pexp.c -o pexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qexp.c -o qexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rexp.c -o rexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dgeom.c -o dgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pgeom.c -o pgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qgeom.c -o qgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rgeom.c -o rgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dhyper.c -o dhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c phyper.c -o phyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qhyper.c -o qhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rhyper.c -o rhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnbinom.c -o dnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnbinom.c -o pnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbinom.c -o qnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbinom_mu.c -o qnbinom_mu.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnbinom.c -o rnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dpois.c -o dpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ppois.c -o ppois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qpois.c -o qpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rpois.c -o rpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dweibull.c -o dweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pweibull.c -o pweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qweibull.c -o qweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rweibull.c -o rweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dlogis.c -o dlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plogis.c -o plogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qlogis.c -o qlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rlogis.c -o rlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnchisq.c -o dnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnchisq.c -o pnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnchisq.c -o qnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnbeta.c -o dnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnbeta.c -o pnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbeta.c -o qnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnf.c -o pnf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnt.c -o pnt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnf.c -o qnf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnt.c -o qnt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ptukey.c -o ptukey.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qtukey.c -o qtukey.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c toms708.c -o toms708.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c wilcox.c -o wilcox.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c signrank.c -o signrank.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c std_unif.c -o std_unif.o ar -cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o ranlib libRmath.a make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/nmath/standalone' make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mlutils.c -o mlutils.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c d1mach.c -o d1mach.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c i1mach.c -o i1mach.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fmax2.c -o fmax2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fmin2.c -o fmin2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fprec.c -o fprec.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fround.c -o fround.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ftrunc.c -o ftrunc.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sign.c -o sign.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fsign.c -o fsign.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c imax2.c -o imax2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c imin2.c -o imin2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c chebyshev.c -o chebyshev.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c log1p.c -o log1p.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lgammacor.c -o lgammacor.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gammalims.c -o gammalims.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c stirlerr.c -o stirlerr.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bd0.c -o bd0.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gamma.c -o gamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lgamma.c -o lgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gamma_cody.c -o gamma_cody.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c beta.c -o beta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lbeta.c -o lbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c polygamma.c -o polygamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cospi.c -o cospi.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_i.c -o bessel_i.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_j.c -o bessel_j.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_k.c -o bessel_k.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_y.c -o bessel_y.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c choose.c -o choose.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c snorm.c -o snorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sexp.c -o sexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dgamma.c -o dgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pgamma.c -o pgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qgamma.c -o qgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rgamma.c -o rgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dbeta.c -o dbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pbeta.c -o pbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qbeta.c -o qbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rbeta.c -o rbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dunif.c -o dunif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c punif.c -o punif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qunif.c -o qunif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c runif.c -o runif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnorm.c -o dnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnorm.c -o pnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnorm.c -o qnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnorm.c -o rnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dlnorm.c -o dlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plnorm.c -o plnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qlnorm.c -o qlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rlnorm.c -o rlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c df.c -o df.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pf.c -o pf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qf.c -o qf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rf.c -o rf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnf.c -o dnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dt.c -o dt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pt.c -o pt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qt.c -o qt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rt.c -o rt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnt.c -o dnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dchisq.c -o dchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pchisq.c -o pchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qchisq.c -o qchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rchisq.c -o rchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnchisq.c -o rnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dbinom.c -o dbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pbinom.c -o pbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qbinom.c -o qbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rbinom.c -o rbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rmultinom.c -o rmultinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dcauchy.c -o dcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pcauchy.c -o pcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qcauchy.c -o qcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rcauchy.c -o rcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dexp.c -o dexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pexp.c -o pexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qexp.c -o qexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rexp.c -o rexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dgeom.c -o dgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pgeom.c -o pgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qgeom.c -o qgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rgeom.c -o rgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dhyper.c -o dhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c phyper.c -o phyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qhyper.c -o qhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rhyper.c -o rhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnbinom.c -o dnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnbinom.c -o pnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbinom.c -o qnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbinom_mu.c -o qnbinom_mu.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnbinom.c -o rnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dpois.c -o dpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ppois.c -o ppois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qpois.c -o qpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rpois.c -o rpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dweibull.c -o dweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pweibull.c -o pweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qweibull.c -o qweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rweibull.c -o rweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dlogis.c -o dlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plogis.c -o plogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qlogis.c -o qlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rlogis.c -o rlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnchisq.c -o dnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnchisq.c -o pnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnchisq.c -o qnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnbeta.c -o dnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnbeta.c -o pnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbeta.c -o qnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnf.c -o pnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnt.c -o pnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnf.c -o qnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnt.c -o qnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ptukey.c -o ptukey.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qtukey.c -o qtukey.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c toms708.c -o toms708.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c wilcox.c -o wilcox.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c signrank.c -o signrank.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c std_unif.c -o std_unif.lo gcc -shared -fopenmp -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o libRmath.so mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo qnbinom_mu.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/nmath/standalone' + make pdf make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/doc' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/doc/manual' creating doc/manual/version.tex collecting LaTeX docs for package 'base' ... 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This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-02-18> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. 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(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/usr/share/texliv e/texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [1] [2] (./base-pkg.tex Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) (/usr/share/texlive/texmf-dist/tex/latex/jknapltx/ursfs.fd) [3] [4] Underfull \hbox (badness 6741) in paragraph at lines 143--149 []\T1/ptm/m/n/10 the small-est pos-i-tive floating-point num-ber []\T1/pcr/m/n/ 10 x []\T1/ptm/m/n/10 such that []\T1/pcr/m/n/10 1 + x != 1[]\T1/ptm/m/n/10 . Underfull \hbox (badness 4805) in paragraph at lines 143--149 \T1/ptm/m/n/10 It equals []\T1/pcr/m/n/10 double.base ^ ulp.digits []\T1/ptm/m/ n/10 if ei-ther []\T1/pcr/m/n/10 double.base []\T1/ptm/m/n/10 is Underfull \hbox (badness 4316) in paragraph at lines 143--149 \T1/ptm/m/n/10 2 or []\T1/pcr/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0; oth -er-wise, it is []\T1/pcr/m/n/10 (double.base ^ Underfull \hbox (badness 4454) in paragraph at lines 149--157 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/pcr/m/n/10 x [ ]\T1/ptm/m/n/10 such that []\T1/pcr/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It Underfull \hbox (badness 1028) in paragraph at lines 149--157 \T1/ptm/m/n/10 equals []\T1/pcr/m/n/10 double.base ^ double.neg.ulp.digits []\T 1/ptm/m/n/10 if []\T1/pcr/m/n/10 double.base Underfull \hbox (badness 2980) in paragraph at lines 149--157 []\T1/ptm/m/n/10 is 2 or []\T1/pcr/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0 ; oth-er-wise, it is []\T1/pcr/m/n/10 (double.base Underfull \hbox (badness 1394) in paragraph at lines 149--157 \T1/pcr/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/p cr/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As [5] Underfull \hbox (badness 1142) in paragraph at lines 219--224 []\T1/ptm/m/n/10 the num-ber of \T1/ptm/m/it/10 bytes \T1/ptm/m/n/10 in the C [ ]\T1/pcr/m/n/10 time_t []\T1/ptm/m/n/10 type: a 64-bit []\T1/pcr/m/n/10 time_t []\T1/ptm/m/n/10 (value Underfull \hbox (badness 1478) in paragraph at lines 219--224 []\T1/pcr/m/n/10 8[]\T1/ptm/m/n/10 ) is much pre-ferred these days. Note that t his is the type used by Underfull \hbox (badness 1484) in paragraph at lines 226--231 []\T1/ptm/m/n/10 introduced in \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.0.0. When [][] []\T1/pcr/m/n/10 capabilities[][][]("long.double") []\T1/ptm/m/n/10 is Underfull \hbox (badness 3009) in paragraph at lines 235--247 []\T1/pcr/m/n/10 *.exponent[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 *.min.exp[]\T1/p tm/m/n/10 , and []\T1/pcr/m/n/10 *.max.exp[]\T1/ptm/m/n/10 , com-puted en-tirel y anal-o-gously to their [6] Underfull \hbox (badness 5652) in paragraph at lines 255--260 []\T1/ptm/m/n/10 Note that it is le-gal for a plat-form to have a `[]\T1/pcr/m/ n/10 long double[]\T1/ptm/m/n/10 ' C type which is Underfull \hbox (badness 6691) in paragraph at lines 255--260 \T1/ptm/m/n/10 iden-ti-cal to the `[]\T1/pcr/m/n/10 double[]\T1/ptm/m/n/10 ' ty pe --- this hap-pens on ARM CPUs. In that case Underfull \hbox (badness 1521) in paragraph at lines 255--260 [][][]\T1/pcr/m/n/10 capabilities[][][]("long.double") []\T1/ptm/m/n/10 will be false but on ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 prior to 4.0.4, [7] Underfull \hbox (badness 10000) in paragraph at lines 375--379 [][][]\T1/pcr/m/n/10 R.version[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 Sys.info[][][] []\T1/ptm/m/n/10 give more de-tails about the OS. In par-tic-u-l ar, [8] [9] [10] Underfull \hbox (badness 1072) in paragraph at lines 572--578 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/pcr/m/n/10 insertions[]\T1/ptm/m/n/10 ', [11] Overfull \hbox (4.38043pt too wide) in paragraph at lines 641--641 []\T1/pcr/m/n/9 agrep("laysy", c("1 lazy", "1", "1 LAZY"), max.distance = 2, v alue = TRUE)[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 642--642 []\T1/pcr/m/n/9 agrep("laysy", c("1 lazy", "1", "1 LAZY"), max.distance = 2, i gnore.case = TRUE)[] [12] [13] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Overfull \hbox (60.78088pt too wide) in paragraph at lines 773--773 [] \T1/pcr/m/n/10 ..., check.attributes = TRUE, check.class = TRUE, g iveErr = FALSE)[] [14] [15] Overfull \hbox (4.38043pt too wide) in paragraph at lines 927--927 []\T1/pcr/m/n/9 all.equal(tan(d45), one, tolerance = 0, scale = 1+(-2:2)/1e9) # "absolute"[] [16] Overfull \hbox (4.38043pt too wide) in paragraph at lines 948--948 []\T1/pcr/m/n/9 mtext(paste("mean(all.equal(x1, x2*(1 + eps_k))) {100 x} Mean rel.diff.=",[] Overfull \hbox (69.18036pt too wide) in paragraph at lines 976--976 []\T1/pcr/m/n/9 all.equal(two^20, 2^20, check.attributes = FALSE)# "target is bar, current is numeric"[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 977--977 []\T1/pcr/m/n/9 all.equal(two^20, 2^20, check.attributes = FALSE, check.class = FALSE) # TRUE[] Underfull \vbox (badness 10000) has occurred while \output is active [17] Overfull \hbox (0.78088pt too wide) in paragraph at lines 1002--1002 []\T1/pcr/m/n/10 all.names(expr, functions = TRUE, max.names = -1L, unique = F ALSE) [18] [19] [20] [21] [22] [23] [24] (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [25] Underfull \hbox (badness 1221) in paragraph at lines 1535--1541 []\T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion, where \T1/phv/m/n/10 R \T1/p tm/m/n/10 uses ``floored'' in-te-ger di-vi-sion, i.e., []\T1/pcr/m/n/10 q <- x %/% y := [26] Underfull \hbox (badness 10000) in paragraph at lines 1623--1631 \T1/ptm/m/n/10 Also avail-able at [][]$\T1/pcr/m/n/10 https : / / docs . oracle . com / cd / E19957-[]01 / 806-[]3568 / ncg _ [27] [28] [29] [30] Underfull \vbox (badness 10000) has occurred while \output is active [31] Overfull \hbox (72.78088pt too wide) in paragraph at lines 1966--1966 [] \T1/pcr/m/n/10 cut.names = FALSE, col.names = names(x), fix.em pty.names = TRUE,[] Underfull \hbox (badness 1303) in paragraph at lines 1998--2001 []\T1/ptm/m/n/10 logical or in-te-ger; in-di-cat-ing if col-umn names with more than 256 (or [32] [33] Overfull \hbox (31.3804pt too wide) in paragraph at lines 2089--2089 []\T1/pcr/m/n/9 names(dL <- as.data.frame(L)) # "NA."[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 2090--2090 []\T1/pcr/m/n/9 names(dL1 <- as.data.frame(L, col.names = names(L))) # "NA."[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 2092--2092 []\T1/pcr/m/n/9 names(dL1.<- as.data.frame(L, check.name s=FALSE)) # "NA"[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 2094--2094 []\T1/pcr/m/n/9 names(dL2 <- as.data.frame(L, col.names = names(L), check.name s=FALSE)) # NA[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 2095--2095 []\T1/pcr/m/n/9 names(dLn <- as.data.frame(L, new.names = TRUE, check.name s=FALSE)) # NA[] [34] [35] [36] Overfull \hbox (112.38031pt too wide) in paragraph at lines 2285--2285 []\T1/pcr/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] Underfull \hbox (badness 10000) in paragraph at lines 2323--2325 []\T1/ptm/m/n/10 If [][][]\T1/pcr/m/n/10 is.object[][][](x) []\T1/ptm/m/n/10 is true and it has a [][][]\T1/pcr/m/n/10 class[][][] []\T1/ptm/m/n/10 for which an [37] [38] [39] [40] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2599--2599 []\T1/pcr/m/n/9 (now <- as.POSIXlt(Sys.time())) # the current datetime, as cla ss "POSIXlt"[] [41] Overfull \hbox (121.828pt too wide) in paragraph at lines 2639--2639 []\T1/pcr/m/n/9 if(file.exists(tab)) { # typically on Windows; on Linux when \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 configure --with-internal-tzcode\TS1/cmtt/m/n/9 `[] [42] [43] Underfull \hbox (badness 1107) in paragraph at lines 2807--2809 []\T1/ptm/m/n/10 There are no re-stric-tions on the name given as []\T1/pcr/m/n /10 x[]\T1/ptm/m/n/10 : it can be a non-syntactic name (see [44] [45] [46] Overfull \hbox (42.78088pt too wide) in paragraph at lines 2974--2974 []\T1/pcr/m/n/10 attach(what, pos = 2L, name = deparse1(substitute(what), back tick=FALSE), [47] [48] [49] [50] [51] [52] Underfull \hbox (badness 10000) in paragraph at lines 3443--3446 []\T1/pcr/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[] [][] ver-sion of []\T1/pcr/m/n/10 balancePOSIXlt(x, [53] [54] [55] [56] Overfull \hbox (31.3804pt too wide) in paragraph at lines 3749--3749 []\T1/pcr/m/n/9 legend("topright", legend = paste("nu=", nus), col = nus + 2, lwd = 1, bty="n")[] [57] Overfull \hbox (9.78043pt too wide) in paragraph at lines 3780--3780 []\T1/pcr/m/n/9 plot(range(x0), c(1e-40, 1), log = "xy", xlab = "x", ylab = "" , type = "n",[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 3781--3781 [] \T1/pcr/m/n/9 main = "Bessel Functions J_nu(x) near 0\n log - log sc ale") ; axis(2, at=1)[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3788--3788 []\T1/pcr/m/n/9 plot(range(x0), 10^c(-100, 80), log = "xy", xlab = "x", ylab = "", type = "n",[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 3789--3789 [] \T1/pcr/m/n/9 main = "Bessel Functions K_nu(x) near 0\n log - log sc ale") ; axis(2, at=1)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 3792--3792 []\T1/pcr/m/n/9 legend("topright", legend = paste("nu=", paste(nus, nus + 0.5, sep = ", ")),[] Underfull \vbox (badness 10000) has occurred while \output is active [58] [59] [60] [61] [62] [63] [64] Underfull \hbox (badness 10000) in paragraph at lines 4239--4241 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [65] [66] [67] [68] [69] [70] [71] Overfull \hbox (9.78043pt too wide) in paragraph at lines 4721--4721 []\T1/pcr/m/n/9 L <- as.list(E <- setNames( , c("if", "for", "while", "repeat" , "function",[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 4722--4722 [] \T1/pcr/m/n/9 "(", "{", "[", "<-", "<<-", "->", "=")))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 4723--4723 []\T1/pcr/m/n/9 for(i in seq_along(L)) L[[i]] <- call(E[[i]]) # instead of lap ply(E, call) ..[] Overfull \hbox (73.22806pt too wide) in paragraph at lines 4724--4724 []\T1/pcr/m/n/9 list_ <- function (...) \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 names<- \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 (list(...), vapply(sys.call()[-1L], as.character , ""))[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 4725--4725 []\T1/pcr/m/n/9 (Tab <- noquote(sapply(list_(is.call, typeof, class, mode), \( F) sapply(L, F))))[] [72] Underfull \hbox (badness 4927) in paragraph at lines 4793--4797 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the name of a C func-tion, or an ob-ject Underfull \hbox (badness 2012) in paragraph at lines 4793--4797 \T1/ptm/m/n/10 of class []\T1/pcr/m/n/10 "[][]NativeSymbolInfo[][][]"[]\T1/ptm/ m/n/10 , []\T1/pcr/m/n/10 "[][]RegisteredNativeSymbol[][][]" []\T1/ptm/m/n/10 o r [73] Overfull \hbox (0.78088pt too wide) in paragraph at lines 4877--4877 [] \T1/pcr/m/n/10 Xchk = any(nas %in% c("X11", "jpeg", "png", "tif f")))[] [74] Underfull \hbox (badness 4595) in paragraph at lines 4951--4954 []\T1/ptm/m/n/10 is ICU avail-able for col-la-tion? See the help on [][]Com-par -i-son[][][] and [75] [76] [77] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5114--5114 []\T1/pcr/m/n/9 cat(paste(letters, 100* 1:26), fill = TRUE, labels = paste0("{ ", 1:10, "}:"))[] Underfull \hbox (badness 1199) in paragraph at lines 5143--5149 []\T1/ptm/m/n/10 (generalized) vec-tors or ma-tri-ces. These can be given as na med ar-gu- Underfull \hbox (badness 2573) in paragraph at lines 5155--5158 []\T1/ptm/m/n/10 (only for data frame method:) log-i-cal in-di-cat-ing if uniqu e and valid [78] [79] [80] Overfull \hbox (9.78043pt too wide) in paragraph at lines 5326--5326 []\T1/pcr/m/n/9 rbind(1:4, c = 2, "a++" = 10, dd, deparse.level = 1) # 3 rowna mes (default)[] [81] [82] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5499--5499 []\T1/pcr/m/n/9 as.character(list(A = "Abc", xy = c("x", "y"))) # "Abc" "c(\" x\", \"y\")"[] [83] Underfull \hbox (badness 2521) in paragraph at lines 5587--5589 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [84] [85] [86] [87] [88] [89] [90] [91] Underfull \hbox (badness 1270) in paragraph at lines 6075--6083 []\T1/ptm/m/n/10 When a generic func-tion []\T1/pcr/m/n/10 fun []\T1/ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute []\T1/pcr/m/n/10 c("first", [92] [93] [94] [95] [96] [97] [98] [99] Underfull \hbox (badness 1796) in paragraph at lines 6652--6660 []\T1/ptm/m/n/10 Collation of char-ac-ter strings is a com-plex topic. For an i n-tro-duc-tion see [][]$\T1/pcr/m/n/10 https : / / [100] [101] [102] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6858--6858 []\T1/pcr/m/n/9 NAs <- vapply(list(NA, NA_integer_, NA_real_, NA_character_, N A_complex_),[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 6868--6868 []\T1/pcr/m/n/9 ## The exact result of this *depends* on the platform, compile r, math-library:[] Overfull \hbox (90.78033pt too wide) in paragraph at lines 6870--6870 []\T1/pcr/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [103] [104] Underfull \hbox (badness 1635) in paragraph at lines 7073--7076 []\T1/ptm/m/n/10 User in-ter-rupts sig-nal a con-di-tion of class []\T1/pcr/m/n /10 interrupt []\T1/ptm/m/n/10 that in-her-its di-rectly from class [105] Underfull \hbox (badness 3009) in paragraph at lines 7077--7080 []\T1/ptm/m/n/10 Restarts are used for es-tab-lish-ing re-cov-ery pro-to-cols. They can be es-tab-lished us-ing Underfull \hbox (badness 1308) in paragraph at lines 7120--7128 []\T1/ptm/m/n/10 One ad-di-tional field that can be spec-i-fied for a restart i s []\T1/pcr/m/n/10 interactive[]\T1/ptm/m/n/10 . This should [106] [107] Overfull \hbox (0.78088pt too wide) in paragraph at lines 7291--7291 []\T1/pcr/m/n/10 zstdfile(description, open = "", encoding = getOption("encodi ng"),[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 7294--7294 []\T1/pcr/m/n/10 unz(description, filename, open = "", encoding = getOption("e ncoding"))[] [108] Underfull \hbox (badness 4505) in paragraph at lines 7346--7349 []\T1/ptm/m/n/10 character string, par-tially matched to []\T1/pcr/m/n/10 c("de fault", "internal", [109] [110] Underfull \hbox (badness 10000) in paragraph at lines 7481--7486 []\T1/pcr/m/n/10 file[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pipe[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 fifo[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 url[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 gzfile[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 bzfile[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 xzfile[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 zstdfile[]\T1/ ptm/m/n/10 , []\T1/pcr/m/n/10 unz[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1092) in paragraph at lines 7481--7486 []\T1/pcr/m/n/10 socketConnection[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 socketAcce pt []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 serverSocket []\T1/ptm/m/n/10 re-turn a con-nec-tion ob-ject [111] [112] [113] Underfull \hbox (badness 10000) in paragraph at lines 7744--7746 []\T1/ptm/m/n/10 It may be pos-si-ble to de-duce the cur-rent na-tive en-cod-in g from [114] Underfull \hbox (badness 3302) in paragraph at lines 7786--7793 []\T1/pcr/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/pcr/m/n/10 descri ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/pcr/m/n/10 "r" []\T1/ptm/m/n /10 only. This [115] [116] Underfull \vbox (badness 10000) has occurred while \output is active [117] Underfull \vbox (badness 10000) has occurred while \output is active [118] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8032--8032 []\T1/pcr/m/n/9 A <- read.table(con <- file("students", encoding = "UCS-2LE")) ; close(con)[] [119] [120] [121] [122] [123] Underfull \hbox (badness 10000) in paragraph at lines 8387--8389 []\T1/ptm/m/n/10 The cur-rent eval-u-a-tion depth (in-clud-ing two calls for th e call to [124] [125] Overfull \hbox (9.78043pt too wide) in paragraph at lines 8546--8546 []\T1/pcr/m/n/9 curlGetHeaders("http://bugs.r-project.org") ## this redirect s to https://[] [126] [127] [128] [129] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8780--8780 []\T1/pcr/m/n/9 tm <- seq(as.POSIXct("2012-06-01 06:00"), by = "6 hours", leng th.out = 24)[] [130] [131] Underfull \hbox (badness 10000) in paragraph at lines 8896--8906 []\T1/pcr/m/n/10 data.frame []\T1/ptm/m/n/10 con-verts each of its ar-gu-ments to a data frame by call-ing Underfull \hbox (badness 1975) in paragraph at lines 8896--8906 [][][]\T1/pcr/m/n/10 as.data.frame[][][](optional = TRUE)[]\T1/ptm/m/n/10 . As that is a generic func-tion, meth-ods can be [132] [133] Overfull \hbox (20.58041pt too wide) in paragraph at lines 9064--9064 [] \T1/pcr/m/n/9 c = seq(as.Date("2004-01-01"), by = "week", l ength.out = 3),[] [134] [135] [136] [137] Underfull \hbox (badness 10000) in paragraph at lines 9402--9414 \T1/pcr/m/n/10 23:59:59", format = "%Y-%m-%d %H:%M:%S", tz = "UTC") []\T1/ptm/m /n/10 may give []\T1/pcr/m/n/10 NA[]\T1/ptm/m/n/10 , and [138] [139] [140] [141] [142] [143] [144] [145] [146] Overfull \hbox (9.78043pt too wide) in paragraph at lines 10052--10052 []\T1/pcr/m/n/9 ### Promises in an environment [for advanced users]: -------- -------------[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 10054--10054 []\T1/pcr/m/n/9 e <- (function(x, y = 1, z) environment())(cos, "y", {cat(" HO !\n"); pi+2})[] [147] Overfull \hbox (60.78088pt too wide) in paragraph at lines 10082--10082 [] \T1/pcr/m/n/10 backtick = mode(expr) %in% c("call", "expression", "( ", "function"),[] Overfull \hbox (60.78088pt too wide) in paragraph at lines 10083--10083 [] \T1/pcr/m/n/10 control = c("keepNA", "keepInteger", "niceNames", "sh owAttributes"),[] [148] [149] Underfull \hbox (badness 5403) in paragraph at lines 10210--10212 []\T1/pcr/m/n/10 ..deparseOpts []\T1/ptm/m/n/10 is the [][][]\T1/pcr/m/n/10 cha racter[][][] []\T1/ptm/m/n/10 vec-tor of pos-si-ble de-pars-ing op-tions used b y Underfull \hbox (badness 6063) in paragraph at lines 10229--10231 []\T1/ptm/m/n/10 Surround un-eval-u-ated ex-pres-sions, but not [][][]\T1/pcr/m /n/10 formula[][][][]\T1/ptm/m/n/10 s, with [150] [151] [152] Underfull \hbox (badness 1603) in paragraph at lines 10459--10462 []\T1/ptm/m/n/10 a nu-meric value. The mod-u-lus (ab-so-lute value) of the de-t er-mi-nant if [153] [154] [155] [156] [157] [158] Overfull \hbox (12.78088pt too wide) in paragraph at lines 10932--10932 [] \T1/pcr/m/n/10 z <- as.POSIXct(c("2016-12-31 23:59:59", "2017-01-01 00:0 0:01"))[] [159] [160] [161] Underfull \hbox (badness 1917) in paragraph at lines 11096--11101 []\T1/pcr/m/n/10 provideDimnames(x) []\T1/ptm/m/n/10 pro-vides []\T1/pcr/m/n/10 dimnames []\T1/ptm/m/n/10 where ``miss-ing'', such that its re-sult has [162] Overfull \hbox (36.7804pt too wide) in paragraph at lines 11151--11151 []\T1/pcr/m/n/9 strd(provideDimnames(N, base= list(letters[-(1:9)], tail(LETTE RS)))) # recycling[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 11152--11152 []\T1/pcr/m/n/9 strd(provideDimnames(A, base= list(c("AA","BB")))) # recycling on both levels[] [163] Underfull \hbox (badness 1168) in paragraph at lines 11254--11259 []\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of []\ T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . Cur-rently this is only used by [164] [165] Overfull \hbox (25.98041pt too wide) in paragraph at lines 11356--11356 []\T1/pcr/m/n/9 ## From R 4.1.0 to 4.1.2, ...names() sometimes did not match n ames(list(...));[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 11358--11358 []\T1/pcr/m/n/9 chk.n2 <- function(...) stopifnot(identical(print(...names()), names(list(...))))[] [166] Underfull \hbox (badness 2828) in paragraph at lines 11477--11482 [][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / IEEE _ 754-[]19 85$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . Underfull \hbox (badness 10000) in paragraph at lines 11477--11482 \T1/pcr/m/n/10 org / wiki / IEEE _ 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr /m/n/10 https : / / en . wikipedia . org / wiki / IEEE _ Underfull \hbox (badness 10000) in paragraph at lines 11477--11482 \T1/pcr/m/n/10 754-[]2019$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/ pcr/m/n/10 https : [167] Overfull \hbox (42.78088pt too wide) in paragraph at lines 11508--11508 [] \T1/pcr/m/n/10 control = c("keepNA", "keepInteger", "niceNames", "showA ttributes"))[] [168] Overfull \hbox (15.18042pt too wide) in paragraph at lines 11582--11582 []\T1/pcr/m/n/9 ## Write an ASCII version of the \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 base\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 function mean() to our temp file, ..[] [169] Overfull \hbox (4.38043pt too wide) in paragraph at lines 11659--11659 []\T1/pcr/m/n/9 drop(1:3 %*% 2:4) # scalar product - w/o drop(.), would retur n 1x1 matrix[] [170] Overfull \hbox (9.78043pt too wide) in paragraph at lines 11740--11740 []\T1/pcr/m/n/9 aq <- transform(airquality, Month = factor(Month, labels = mon th.abb[5:9])) [171] [172] [173] Underfull \hbox (badness 6396) in paragraph at lines 11939--11947 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 10000) in paragraph at lines 11948--11950 []\T1/pcr/m/n/10 duplicated(x, fromLast = TRUE) []\T1/ptm/m/n/10 is equiv-a-len t to but faster than [174] [175] [176] Underfull \hbox (badness 10000) in paragraph at lines 12166--12169 []\T1/ptm/m/n/10 Do not use []\T1/pcr/m/n/10 dyn.unload []\T1/ptm/m/n/10 on a D LL loaded by [][][]\T1/pcr/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 : use [177] [178] [179] [180] [181] [182] Underfull \hbox (badness 2744) in paragraph at lines 12609--12611 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [183] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12632--12632 []\T1/pcr/m/n/9 Encoding(x.) # "unknown" (UTF-8 loc.) | "latin1" (8859-1/CP-12 52 loc.) | ....[] [184] [185] [186] Underfull \hbox (badness 5288) in paragraph at lines 12886--12888 []\T1/ptm/m/n/10 The path to the de-fault browser. Used to set the de-fault val ue of Underfull \hbox (badness 3039) in paragraph at lines 12896--12901 []\T1/ptm/m/n/10 Optional. The path to Ghostscript, used by [][][]\T1/pcr/m/n/1 0 dev2bitmap[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 bitmap[][][] []\T1/pt m/m/n/10 and [187] Underfull \hbox (badness 10000) in paragraph at lines 12953--12956 []\T1/ptm/m/n/10 The path to HTML []\T1/pcr/m/n/10 tidy[]\T1/ptm/m/n/10 . Used by []\T1/pcr/m/n/10 R CMD check []\T1/ptm/m/n/10 if Underfull \hbox (badness 10000) in paragraph at lines 12971--12973 []\T1/ptm/m/n/10 (and more). Op-tional. Set-tings for [188] [189] [190] [191] Underfull \hbox (badness 10000) in paragraph at lines 13221--13223 []\T1/ptm/m/n/10 a frame in the call-ing list. Equiv-a-lent to giv-ing []\T1/pc r/m/n/10 where []\T1/ptm/m/n/10 as Underfull \hbox (badness 5970) in paragraph at lines 13264--13266 []\T1/pcr/m/n/10 get0(): []\T1/ptm/m/n/10 The object---as from [][][]\T1/pcr/m/ n/10 get[][][](x, *)[]\T1/ptm/m/n/10 --- if []\T1/pcr/m/n/10 exists(x, *) []\T1 /ptm/m/n/10 is true, oth-er-wise [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] Overfull \hbox (9.78043pt too wide) in paragraph at lines 14081--14081 []\T1/pcr/m/n/9 ## "avector" := vector that keeps attributes. Could provide a constructor[] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] Underfull \hbox (badness 2253) in paragraph at lines 14817--14819 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see Underfull \hbox (badness 1490) in paragraph at lines 14852--14855 []\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m a-tion is given about the [214] [215] Underfull \hbox (badness 2573) in paragraph at lines 14989--14991 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/pcr /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/pcr/m/n/10 fsep = [216] [217] Underfull \hbox (badness 10000) in paragraph at lines 15150--15152 []\T1/ptm/m/n/10 logical: should file dates be pre-served where pos-si-ble? See [218] [219] Underfull \hbox (badness 10000) in paragraph at lines 15271--15275 [][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/pcr/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15282--15285 [][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . Overfull \hbox (47.58038pt too wide) in paragraph at lines 15303--15303 [] \T1/pcr/m/n/9 # |--> (TRUE,FALSE) : ok for A but not B as it exists already[] [220] Overfull \hbox (30.78088pt too wide) in paragraph at lines 15329--15329 []\T1/pcr/m/n/10 dir.create(path, showWarnings = TRUE, recursive = FALSE, mode = "0777")[] [221] Underfull \hbox (badness 10000) in paragraph at lines 15425--15428 [][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil e.exists[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/pcr/m/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/ m/n/10 unlink[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 basename[][][][]\T1/ ptm/m/n/10 , Overfull \hbox (9.78043pt too wide) in paragraph at lines 15435--15435 []\T1/pcr/m/n/9 f <- list.files(".", all.files = TRUE, full.names = TRUE, recu rsive = TRUE)[] [222] Underfull \hbox (badness 10000) in paragraph at lines 15501--15504 []\T1/pcr/m/n/10 packageNotFoundError []\T1/ptm/m/n/10 cre-ates an er-ror con-d i-tion ob-ject of class Overfull \hbox (20.58041pt too wide) in paragraph at lines 15518--15518 []\T1/pcr/m/n/9 ## will not give an error, maybe a warning about *all* locatio ns it is found:[] [223] Overfull \hbox (0.78088pt too wide) in paragraph at lines 15547--15547 []\T1/pcr/m/n/10 findInterval(x, vec, rightmost.closed = FALSE, all.inside = F ALSE, Overfull \hbox (6.78088pt too wide) in paragraph at lines 15548--15548 [] \T1/pcr/m/n/10 left.open = FALSE, checkSorted = TRUE, checkNA = TRUE)[] [224] Underfull \hbox (badness 3965) in paragraph at lines 15586--15590 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, Overfull \hbox (52.98038pt too wide) in paragraph at lines 15638--15638 []\T1/pcr/m/n/9 stopifnot(identical(it, ## suppressing the checks is faster *B UT* dangerous, unless[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 15639--15639 [] \T1/pcr/m/n/9 ## you *know* that X is sorted and tt contains no NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 15640--15640 [] \T1/pcr/m/n/9 findInterval(tt, X, checkSorted=FALSE, che ckNA=FALSE)))[] [225] [226] Overfull \hbox (0.78088pt too wide) in paragraph at lines 15753--15753 [] \T1/pcr/m/n/10 .C(.NAME, ..., NAOK = FALSE, DUP = TRUE, PACKAGE, ENCO DING) Overfull \hbox (0.78088pt too wide) in paragraph at lines 15754--15754 [] \T1/pcr/m/n/10 .Fortran(.NAME, ..., NAOK = FALSE, DUP = TRUE, PACKAGE, ENCO DING)[] [227] [228] [229] [230] Overfull \hbox (63.78036pt too wide) in paragraph at lines 15996--15996 []\T1/pcr/m/n/9 ## formals returns a pairlist. Arguments with no default have type symbol (aka name).[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 15999--15999 []\T1/pcr/m/n/9 ## formals returns NULL for primitive functions. Use it in co mbination with[] [231] Underfull \hbox (badness 1331) in paragraph at lines 16088--16092 []\T1/ptm/m/n/10 either a log-i-cal spec-i-fy-ing whether el-e-ments of a real or com-plex vec- Underfull \hbox (badness 2012) in paragraph at lines 16088--16092 \T1/ptm/m/n/10 tor should be en-coded in sci-en-tific for-mat, or an in-te-ger penalty (see Underfull \hbox (badness 10000) in paragraph at lines 16095--16095 []\T1/pcr/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 big.interval[]\T1/ ptm/m/n/10 , []\T1/pcr/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sma ll.interval[]\T1/ptm/m/n/10 , [232] Underfull \hbox (badness 6944) in paragraph at lines 16184--16187 [][][]\T1/pcr/m/n/10 formatC[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 paste [][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.character[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/pcr/m/n/10 sprintf[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 p rint[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 prettyNum[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/pcr/m/n/10 toString[][][][]\T1/ptm/m/n/10 , [233] Overfull \hbox (4.38043pt too wide) in paragraph at lines 16214--16214 []\T1/pcr/m/n/9 z <- list(a = letters[1:3], b = (-pi+0i)^((-2:2)/2), c = c(1,1 0,100,1000),[] [234] [235] Underfull \hbox (badness 10000) in paragraph at lines 16352--16354 []\T1/pcr/m/n/10 prettyNum() []\T1/ptm/m/n/10 is used for ``pret-ti-fy-ing'' (p os-si-bly for-mat-ted) num-bers, also in Overfull \hbox (48.78088pt too wide) in paragraph at lines 16372--16372 [] \T1/pcr/m/n/10 decimal.mark = getOption("OutDec"), input.d.mark = decimal.mark,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 16378--16378 []\T1/pcr/m/n/10 .format.zeros(x, zero.print, nx = suppressWarnings(as.numeric (x)),[] [236] Underfull \hbox (badness 2790) in paragraph at lines 16385--16388 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/pcr/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for Underfull \hbox (badness 1024) in paragraph at lines 16416--16423 []\T1/pcr/m/n/10 "f" []\T1/ptm/m/n/10 gives num-bers in the usual []\T1/pcr/m/n /10 xxx.xxx []\T1/ptm/m/n/10 for-mat; []\T1/pcr/m/n/10 "e" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "E" []\T1/ptm/m/n/10 give [237] Underfull \hbox (badness 10000) in paragraph at lines 16492--16494 []\T1/ptm/m/n/10 This works via []\T1/pcr/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/pcr/m/n/10 .format.zeros(*, Underfull \hbox (badness 10000) in paragraph at lines 16514--16519 []\T1/ptm/m/n/10 For num-bers, []\T1/pcr/m/n/10 formatC() []\T1/ptm/m/n/10 call s []\T1/pcr/m/n/10 prettyNum() []\T1/ptm/m/n/10 when needed which it-self calls Underfull \hbox (badness 2426) in paragraph at lines 16520--16522 []\T1/ptm/m/n/10 If you set []\T1/pcr/m/n/10 format []\T1/ptm/m/n/10 it over-ri des the set-ting of []\T1/pcr/m/n/10 mode[]\T1/ptm/m/n/10 , so []\T1/pcr/m/n/10 formatC(123.45, mode = [238] Underfull \hbox (badness 10000) in paragraph at lines 16531--16539 []\T1/pcr/m/n/10 prettyNum []\T1/ptm/m/n/10 is the util-ity func-tion for pret- ti-fy-ing []\T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 x []\T1/ptm/m/n /10 can be com-plex (or [239] Overfull \hbox (4.38043pt too wide) in paragraph at lines 16638--16638 []\T1/pcr/m/n/9 fc <- formatC(1.234 + 10^(0:8), format = "fg", width = 11, big .mark = "\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ")[] Underfull \vbox (badness 10000) has occurred while \output is active [240] Overfull \hbox (42.18039pt too wide) in paragraph at lines 16660--16660 []\T1/pcr/m/n/9 doLC <- FALSE # <= R warns, so change to TRUE manually if you want see the effect[] [241] [242] Overfull \hbox (24.78088pt too wide) in paragraph at lines 16846--16846 []\T1/pcr/m/n/10 Reduce(f, x, init, right = FALSE, accumulate = FALSE, simplif y = TRUE) [243] [244] [245] [246] [247] [248] [249] Overfull \hbox (4.38043pt too wide) in paragraph at lines 17331--17331 []\T1/pcr/m/n/9 ## very low-level: get()ing the "missing argument", e.g., insi de browser()[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 17342--17342 [] \T1/pcr/m/n/9 is.symbol(E$m) # => valid argument to get(), and *also* ge ts \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 missing arg\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 :[] [250] [251] [252] Overfull \hbox (20.58041pt too wide) in paragraph at lines 17524--17524 []\T1/pcr/m/n/9 utils::tail(getLoadedDLLs(), 2) # the last 2 loaded ones, stil l a DLLInfoList[] [253] Underfull \hbox (badness 2418) in paragraph at lines 17633--17637 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/pcr/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [254] Underfull \hbox (badness 6510) in paragraph at lines 17640--17643 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 name []\T1/ptm/m/n/10 con-tains only one s ym-bol name and []\T1/pcr/m/n/10 unlist []\T1/ptm/m/n/10 is []\T1/pcr/m/n/10 TR UE[]\T1/ptm/m/n/10 , then the sin-gle Underfull \hbox (badness 2326) in paragraph at lines 17675--17682 [][][]\T1/pcr/m/n/10 getDLLRegisteredRoutines[][][][]\T1/ptm/m/n/10 , [][][]\T1 /pcr/m/n/10 is.loaded[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .C[][][][]\T 1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .Fortran[][][][]\T1/ptm/m/n/10 , [][][]\T1/ pcr/m/n/10 .External[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .Call[][][][] \T1/ptm/m/n/10 , [255] [256] Overfull \hbox (9.78043pt too wide) in paragraph at lines 17835--17835 []\T1/pcr/m/n/9 ## Not run: ## for translation, those strings should appear in R-pkg.pot as[] [257] Overfull \hbox (20.58041pt too wide) in paragraph at lines 17856--17856 []\T1/pcr/m/n/9 if(is.na(thisLang) || !nzchar(thisLang)) thisLang <- "en" # "f actory" default[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 17859--17859 []\T1/pcr/m/n/9 gettext(enT, domain="R-stats")# "leeres Modell angegeben" (if translation works)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 17889--17889 []\T1/pcr/m/n/9 ## Here, we reset to the *original* setting before the full ex ample started:[] [258] [259] Overfull \hbox (0.78088pt too wide) in paragraph at lines 18027--18027 []\T1/pcr/m/n/10 grep(pattern, x, ignore.case = FALSE, perl = FALSE, value = F ALSE, Overfull \hbox (0.78088pt too wide) in paragraph at lines 18030--18030 []\T1/pcr/m/n/10 grepv(pattern, x, ignore.case = FALSE, perl = FALSE, value = TRUE,[] [260] Underfull \hbox (badness 1867) in paragraph at lines 18058--18065 []\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][] [] (or char-ac-ter string for [261] [262] [263] [264] Overfull \hbox (20.58041pt too wide) in paragraph at lines 18387--18387 [] \T1/pcr/m/n/9 nms <- nms[is.na(match(nms, c("F","T")))] # <-- work around "checking hack"[] Underfull \vbox (badness 10000) has occurred while \output is active [265] Overfull \hbox (36.7804pt too wide) in paragraph at lines 18416--18416 []\T1/pcr/m/n/9 name.rex <- "(?[[:upper:]][[:lower:]]+) (?[[:uppe r:]][[:lower:]]+)"[] Underfull \vbox (badness 10000) has occurred while \output is active [266] Overfull \hbox (0.78088pt too wide) in paragraph at lines 18472--18472 [] \T1/pcr/m/n/10 value = FALSE, fixed = FALSE, all = FALSE, invert = F ALSE)[] [267] [268] [269] [270] Overfull \hbox (9.78043pt too wide) in paragraph at lines 18854--18854 []\T1/pcr/m/n/9 (ii <- grouping(x <- c(1, 1, 3:1, 1:4, 3), y <- c(9, 9:1), z < - c(2, 1:9))) [271] Overfull \hbox (4.38043pt too wide) in paragraph at lines 18919--18919 []\T1/pcr/m/n/9 z <- gzcon(url("https://www.stats.ox.ac.uk/pub/datasets/csb/ch 12.dat.gz"))[] [272] [273] [274] [275] Overfull \hbox (0.78088pt too wide) in paragraph at lines 19130--19130 []\T1/pcr/m/n/10 iconv(x, from = "", to = "", sub = NA, mark = TRUE, toRaw = F ALSE) [276] [277] Underfull \hbox (badness 1360) in paragraph at lines 19293--19297 []\T1/ptm/m/n/10 The most portable name for the ISO 8859-15 en-cod-ing, com-mon ly known as `Latin 9', Underfull \hbox (badness 1210) in paragraph at lines 19293--19297 \T1/ptm/m/n/10 is []\T1/pcr/m/n/10 "iso885915"[]\T1/ptm/m/n/10 : most plat-form s sup-port both []\T1/pcr/m/n/10 "latin-9" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/1 0 "latin9" []\T1/ptm/m/n/10 but GNU [278] [279] [280] Underfull \hbox (badness 1163) in paragraph at lines 19513--19515 []\T1/ptm/m/n/10 The ICU user guide chap-ter on col-la-tion ([][]$\T1/pcr/m/n/1 0 https : / / unicode-[]org . github . io / icu / Overfull \hbox (9.78043pt too wide) in paragraph at lines 19521--19521 []\T1/pcr/m/n/9 ## As we don\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 t know the current s ettings, we can only reset to the default.[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 19551--19551 []\T1/pcr/m/n/10 identical(x, y, num.eq = TRUE, single.NA = TRUE, attrib.as.se t = TRUE, [281] [282] Overfull \hbox (30.78088pt too wide) in paragraph at lines 19645--19645 [] \T1/pcr/m/n/10 num.eq = FALSE, single.NA = FALSE, attrib.as.se t = FALSE,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 19646--19646 [] \T1/pcr/m/n/10 ignore.bytecode = FALSE, ignore.environment = F ALSE,[] [283] Overfull \hbox (25.98041pt too wide) in paragraph at lines 19699--19699 []\T1/pcr/m/n/9 ### For functions ("closure"s): ------------------------------ ----------------[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 19705--19705 []\T1/pcr/m/n/9 identical(f, g) # TRUE, as bytecode is ignored by default[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 19708--19708 []\T1/pcr/m/n/9 ## GLM families contain several functions, some of which share an environment:[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 19714--19714 []\T1/pcr/m/n/9 op <- options(keep.source = TRUE) # and so, these have differi ng "srcref" :[] [284] [285] Overfull \hbox (4.38043pt too wide) in paragraph at lines 19841--19841 []\T1/pcr/m/n/9 ## This is a (not atypical) case where it is better *not* to u se ifelse(),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 19849--19849 []\T1/pcr/m/n/9 ## example of different return modes (and \TS1/pcr/m/n/9 '\T1/ pcr/m/n/9 test\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 alone determining length):[] [286] [287] [288] Underfull \hbox (badness 10000) in paragraph at lines 20054--20056 []\T1/ptm/m/n/10 how some er-rors are han-dled and re-ported, e.g. see [][][]\T 1/pcr/m/n/10 stop[][][] []\T1/ptm/m/n/10 and [289] Underfull \hbox (badness 2057) in paragraph at lines 20157--20183 [][][]\T1/pcr/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.double[][][][]\T1/pt m/m/n/10 , [][][]\T1/pcr/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc r/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.raw[][][][] \T1/ptm/m/n/10 , [290] [291] [292] Underfull \hbox (badness 10000) in paragraph at lines 20355--20363 \T1/ptm/m/n/10 Also avail-able at [][]$\T1/pcr/m/n/10 https : / / docs . oracle . com / cd / E19957-[]01 / 806-[]3568 / ncg _ [293] [294] [295] Underfull \hbox (badness 4699) in paragraph at lines 20555--20558 []\T1/pcr/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "numeric"[]\T1/ptm/m/n/10 , [296] [297] Overfull \hbox (0.78088pt too wide) in paragraph at lines 20687--20687 []\T1/pcr/m/n/10 ISOdate(year, month, day, hour = 12, min = 0, sec = 0, tz = " GMT")[] [298] [299] Underfull \hbox (badness 4739) in paragraph at lines 20824--20826 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [300] Overfull \hbox (36.7804pt too wide) in paragraph at lines 20879--20879 []\T1/pcr/m/n/9 isSymmetric(D3) # FALSE (as row and co lumn names differ)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 20880--20880 []\T1/pcr/m/n/9 isSymmetric(D3, check.attributes=FALSE) # TRUE (as names are not checked)[] [301] Overfull \hbox (48.78088pt too wide) in paragraph at lines 20995--20995 []\T1/pcr/m/n/10 .kappa_tri(z, exact = FALSE, LINPACK = TRUE, norm = NULL, upl o = "U", ...)[] [302] Overfull \hbox (12.78088pt too wide) in paragraph at lines 20997--20997 []\T1/pcr/m/n/10 rcond(x, norm = c("O","I","1"), triangular = FALSE, uplo = "U ", ...)[] [303] Underfull \hbox (badness 2961) in paragraph at lines 21081--21084 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/pcr/m/n/10 https : / / n etlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / [304] Overfull \hbox (20.58041pt too wide) in paragraph at lines 21137--21137 []\T1/pcr/m/n/9 ## Moore-Penrose inverse { ~= MASS::ginv(); differing tol (val ue & meaning)}:[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 21159--21159 []\T1/pcr/m/n/9 try( kappa(m76, exact=TRUE, norm="1") )# error in solve().. m ust be square[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 21161--21161 []\T1/pcr/m/n/9 ## ==> use pseudo-inverse instead of solve() for rectangular { and norm != "2"}:[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 21181--21181 [] \T1/pcr/m/n/9 inv_z = solve(A, tol = 1e-19))) # 5.22057e16 on x86_ 64 Linux with GCC[] [305] [306] [307] [308] [309] [310] Underfull \hbox (badness 1975) in paragraph at lines 21583--21586 []\T1/ptm/m/n/10 The value of the in-ter-nal eval-u-a-tion of a top-level \T1/p hv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sion is al-ways as-signed to [311] [312] [313] [314] [315] [316] [317] Underfull \hbox (badness 1077) in paragraph at lines 21999--22004 []\T1/ptm/m/n/10 In late 2017 a []\T1/pcr/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/pcr/m/n/10 libcurl []\T 1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 22013--22020 [][][]$\T1/pcr/m/n/10 https : / / curl . se / docs / sslcerts . html$[][] \T1/p tm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / curl . se / docs / [318] Underfull \hbox (badness 1112) in paragraph at lines 22086--22095 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/pcr/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , Underfull \hbox (badness 2970) in paragraph at lines 22144--22147 []\T1/pcr/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/pcr/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a Underfull \hbox (badness 2951) in paragraph at lines 22144--22147 \T1/ptm/m/n/10 hid-den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [319] [320] Underfull \hbox (badness 10000) in paragraph at lines 22257--22261 []\T1/ptm/m/n/10 To sup-press mes-sages dur-ing the load-ing of pack-ages use Underfull \hbox (badness 1454) in paragraph at lines 22257--22261 [][][]\T1/pcr/m/n/10 suppressPackageStartupMessages[][][][]\T1/ptm/m/n/10 : thi s will sup-press all mes-sages from \T1/phv/m/n/10 R \T1/ptm/m/n/10 it-self Underfull \hbox (badness 1221) in paragraph at lines 22262--22269 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 library []\T1/ptm/m/n/10 is called with no []\T1/pcr/m/n/10 package []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 help []\T1/ptm/m /n/10 ar-gu-ment, it lists all avail-able pack- [321] [322] Underfull \hbox (badness 10000) in paragraph at lines 22391--22398 [][][]\T1/pcr/m/n/10 attach[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 detach [][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 search[][][][]\T1/ptm/m/n/10 , [] [][]\T1/pcr/m/n/10 objects[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 autoloa d[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 requireNamespace[][][][]\T1/ptm/ m/n/10 , [323] [324] Underfull \hbox (badness 10000) in paragraph at lines 22512--22516 []\T1/ptm/m/n/10 Do not use [][][]\T1/pcr/m/n/10 dyn.unload[][][] []\T1/ptm/m/n /10 on a DLL loaded by []\T1/pcr/m/n/10 library.dynam[]\T1/ptm/m/n/10 : use [325] [326] [327] Overfull \hbox (6.78088pt too wide) in paragraph at lines 22750--22750 [] \T1/pcr/m/n/10 ignore.case = FALSE, include.dirs = FALSE, no.. = FALSE)[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 22754--22754 [] \T1/pcr/m/n/10 ignore.case = FALSE, include.dirs = FALSE, no.. = FALSE)[] [328] Underfull \hbox (badness 3343) in paragraph at lines 22815--22819 [][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil e.access[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 files[][][] []\T1/ptm/ m/n/10 for many more file han-dling func-tions and [329] [330] Overfull \hbox (4.38043pt too wide) in paragraph at lines 22953--22953 [] \T1/pcr/m/n/9 identical(L$b, e$b)) # "$" working for environments as for lists[] [331] Overfull \hbox (20.58041pt too wide) in paragraph at lines 22964--22964 [] \T1/pcr/m/n/9 df = data.frame(x = rnorm(20), y = rbinom(20, 1, prob = 0.2))),[] [332] Overfull \hbox (9.78043pt too wide) in paragraph at lines 23075--23075 []\T1/pcr/m/n/9 ## This however annihilates all objects in .GlobalEnv with the same names ![] Overfull \hbox (74.58035pt too wide) in paragraph at lines 23078--23078 []\T1/pcr/m/n/9 attach("all.rda") # safer and will warn about masked objects w / same name in .GlobalEnv[] [333] Underfull \hbox (badness 6380) in paragraph at lines 23125--23133 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup- [334] Underfull \hbox (badness 2564) in paragraph at lines 23229--23232 []\T1/ptm/m/n/10 Almost all the out-put rou-tines used by \T1/phv/m/n/10 R \T1/ ptm/m/n/10 it-self un-der Win-dows ig-nore the set-ting of [335] Overfull \hbox (4.38043pt too wide) in paragraph at lines 23272--23272 []\T1/pcr/m/n/9 Sys.setlocale("LC_TIME", "de_DE.UTF-8") # Linux, macOS, other Unix-alikes[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 23276--23276 []\T1/pcr/m/n/9 c(m = months(then), wd = weekdays(then)) # in C_TIME locale \T S1/pcr/m/n/9 '\T1/pcr/m/n/9 cT\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 ; typically German [] Overfull \hbox (42.18039pt too wide) in paragraph at lines 23280--23280 []\T1/pcr/m/n/9 c(m = months(then), wd = weekdays(then)) # "standard" (still p latform specific ?)[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 23287--23287 []\T1/pcr/m/n/9 ## Not run: Sys.setlocale("LC_COLLATE", "C") # turn off loca le-specific sorting,[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 23289--23289 []\T1/pcr/m/n/9 Sys.setenv("LANGUAGE" = "es") # set the language for error/war ning messages[] [336] [337] [338] Underfull \hbox (badness 1400) in paragraph at lines 23466--23470 [][][]\T1/pcr/m/n/10 raw[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 logical[] [][] []\T1/ptm/m/n/10 or `number-like' vec-tors (i.e., of types [][][]\T1/pcr/m /n/10 double[][][] []\T1/ptm/m/n/10 (class [339] [340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] Overfull \hbox (52.98038pt too wide) in paragraph at lines 24314--24314 []\T1/pcr/m/n/9 zN <- c(complex(real = NA , imaginary = r ), complex(real = r , imaginary = NA ),[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 24315--24315 [] \T1/pcr/m/n/9 complex(real = r , imaginary = NaN), complex(real = N aN, imaginary = r ))[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 24318--24318 []\T1/pcr/m/n/9 zM ##--> many "NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s" (= 1) and th e four non-NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s (3 different ones, at 7,9,10)[] [351] [352] Overfull \hbox (20.58041pt too wide) in paragraph at lines 24415--24415 []\T1/pcr/m/n/9 match.arg(c("a", ""), c("", NA, "bb", "abc"), several.ok=TRUE ) # |--> "abc"[] Underfull \hbox (badness 1655) in paragraph at lines 24449--24453 []\T1/ptm/m/n/10 `function' on this help page means an in-ter-preted func-tion (also known as a `clo-sure'): [353] [354] [355] [356] Underfull \hbox (badness 1292) in paragraph at lines 24700--24703 []\T1/ptm/m/n/10 For ma-trix \T1/ptm/m/it/10 cross \T1/ptm/m/n/10 prod-ucts, [] [][]\T1/pcr/m/n/10 crossprod[][][]() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 tcro ssprod() []\T1/ptm/m/n/10 are typ-i-cally prefer-able. [357] [358] [359] [360] [361] Overfull \hbox (0.78088pt too wide) in paragraph at lines 25007--25007 []\T1/pcr/m/n/10 memCompress(from, type = c("gzip", "bzip2", "xz", "zstd", "no ne")) [362] [363] [364] [365] Underfull \hbox (badness 1014) in paragraph at lines 25328--25336 \T1/ptm/m/n/10 al-low more (up to 3Gb). See [][]$\T1/pcr/m/n/10 https : / / lea rn . microsoft . com / en-[]gb / windows / Underfull \hbox (badness 10000) in paragraph at lines 25328--25336 \T1/pcr/m/n/10 desktop / Memory / physical-[]address-[]extension$[][] \T1/ptm/m /n/10 and [][]$\T1/pcr/m/n/10 https : / / learn . [366] [367] Overfull \hbox (0.78088pt too wide) in paragraph at lines 25402--25402 [] \T1/pcr/m/n/10 by.x = by, by.y = by, all = FALSE, all.x = all, all.y = all,[] [368] [369] [370] [371] [372] [373] [374] [375] Underfull \hbox (badness 1448) in paragraph at lines 25952--25960 []\T1/pcr/m/n/10 anyNA(recursive = FALSE) []\T1/ptm/m/n/10 works the same way a s []\T1/pcr/m/n/10 is.na[]\T1/ptm/m/n/10 ; []\T1/pcr/m/n/10 anyNA(recursive = [376] Underfull \hbox (badness 3849) in paragraph at lines 26067--26072 []\T1/pcr/m/n/10 as.name []\T1/ptm/m/n/10 first co-erces its ar-gu-ment in-ter- nally to a char-ac-ter vec-tor (so meth-ods for [377] Underfull \hbox (badness 2165) in paragraph at lines 26144--26150 []\T1/ptm/m/n/10 For an [][][]\T1/pcr/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, Underfull \hbox (badness 1199) in paragraph at lines 26144--26150 \T1/ptm/m/n/10 i.e., []\T1/pcr/m/n/10 names(as.list(env, all.names = TRUE)) []\ T1/ptm/m/n/10 which are also given by [][][]\T1/pcr/m/n/10 ls[][][](env, Underfull \hbox (badness 3148) in paragraph at lines 26144--26150 \T1/pcr/m/n/10 all.names = TRUE, sorted = FALSE)[]\T1/ptm/m/n/10 . If the en-vi -ron-ment is used as a hash ta-ble, [378] [379] [380] Underfull \hbox (badness 2237) in paragraph at lines 26307--26309 []\T1/ptm/m/n/10 character string: par-tial match-ing to one of []\T1/pcr/m/n/1 0 c("bytes", "chars", [381] [382] [383] Underfull \hbox (badness 6188) in paragraph at lines 26534--26537 []\T1/ptm/m/n/10 optional [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/pcr/m/n/10 print()[]\T1/ptm/m/n/10 , used by [384] [385] [386] Underfull \hbox (badness 1521) in paragraph at lines 26724--26738 \T1/ptm/m/n/10 tion []\T1/pcr/m/n/10 GetFinalPathNameByHandle []\T1/ptm/m/n/10 and in case of an er-ror (such as in-suf-fi-cient per- [387] [388] [389] [390] Underfull \hbox (badness 2197) in paragraph at lines 27040--27044 []\T1/ptm/m/n/10 Loading a names-pace should where pos-si-ble be silent, with s tartup mes-sages given by Underfull \hbox (badness 4048) in paragraph at lines 27040--27044 []\T1/pcr/m/n/10 .onAttach[]\T1/ptm/m/n/10 . These mes-sages (and any es-sen-ti al ones from []\T1/pcr/m/n/10 .onLoad[]\T1/ptm/m/n/10 ) should use [391] Underfull \hbox (badness 2846) in paragraph at lines 27054--27058 []\T1/ptm/m/n/10 Uses of []\T1/pcr/m/n/10 library []\T1/ptm/m/n/10 with ar-gu-m ent []\T1/pcr/m/n/10 help []\T1/ptm/m/n/10 to dis-play ba-sic in-for-ma-tion ab out the pack- Underfull \hbox (badness 1990) in paragraph at lines 27054--27058 \T1/ptm/m/n/10 age should use []\T1/pcr/m/n/10 format []\T1/ptm/m/n/10 on the c om-puted pack-age in-for-ma-tion ob-ject and pass this to Overfull \hbox (12.78088pt too wide) in paragraph at lines 27096--27096 []\T1/pcr/m/n/10 attachNamespace(ns, pos = 2L, depends = NULL, exclude, includ e.only) Overfull \hbox (0.78088pt too wide) in paragraph at lines 27100--27100 [] \T1/pcr/m/n/10 keep.parse.data = getOption("keep.parse.data.pk gs"))[] [392] Underfull \hbox (badness 10000) in paragraph at lines 27149--27155 []\T1/pcr/m/n/10 loadNamespace []\T1/ptm/m/n/10 does not at-tach the name space it loads to the search path. Underfull \hbox (badness 1168) in paragraph at lines 27149--27155 []\T1/pcr/m/n/10 attachNamespace []\T1/ptm/m/n/10 can be used to at-tach a fram e con-tain-ing the ex-ported val-ues of a Underfull \hbox (badness 10000) in paragraph at lines 27162--27164 []\T1/pcr/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/pcr/m/n/10 pkg %in% [393] Overfull \hbox (9.78043pt too wide) in paragraph at lines 27229--27229 [] \T1/pcr/m/n/9 ## The string "foo" and the symbol \TS1/pcr/m/n/9 '\T1/pcr/m/ n/9 foo\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 can be used interchangeably here:[] [394] [395] [396] Underfull \hbox (badness 8189) in paragraph at lines 27428--27434 []\T1/ptm/m/n/10 The de-fault method for []\T1/pcr/m/n/10 is.numeric []\T1/ptm/ m/n/10 re-turns []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode[][][] [397] [398] [399] Underfull \hbox (badness 2591) in paragraph at lines 27653--27661 \T1/ptm/m/n/10 ject as ob-tained by [][][]\T1/pcr/m/n/10 R.version[][][][]\T1/p tm/m/n/10 . For []\T1/pcr/m/n/10 as.numeric_version []\T1/ptm/m/n/10 and [400] [401] [402] [403] [404] Underfull \hbox (badness 1603) in paragraph at lines 27939--27941 []\T1/ptm/m/n/10 date ob-jects or char-ac-ter vec-tors. (Char-ac-ter vec-tors a re con-verted by [405] Underfull \hbox (badness 1210) in paragraph at lines 28073--28082 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini- [406] [407] [408] Underfull \hbox (badness 3271) in paragraph at lines 28294--28297 []\T1/ptm/m/n/10 default PDF viewer. The de-fault is set from the en-vi-ron-men t vari-able [409] [410] [411] Underfull \hbox (badness 3138) in paragraph at lines 28605--28611 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/pcr/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 28605--28611 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/pcr/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 2088) in paragraph at lines 28605--28611 \T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 1389) in paragraph at lines 28644--28646 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [412] Underfull \hbox (badness 10000) in paragraph at lines 28675--28681 []\T1/ptm/m/n/10 logical: should per-directory pack-age lock-ing be used by Underfull \hbox (badness 3826) in paragraph at lines 28690--28695 []\T1/ptm/m/n/10 Used by [][][]\T1/pcr/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly Underfull \hbox (badness 1009) in paragraph at lines 28708--28711 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/pcr/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/pcr/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 28724--28727 []\T1/ptm/m/n/10 The de-fault type of pack-ages to be down-loaded and in-stalle d -- see [413] [414] Underfull \vbox (badness 10000) has occurred while \output is active [415] [416] [417] Overfull \hbox (4.38043pt too wide) in paragraph at lines 29110--29110 []\T1/pcr/m/n/9 system.time(o <- sort.list(xx, method = "radix")) # 0.007 sec, 300X faster[] Underfull \vbox (badness 10000) has occurred while \output is active [418] Underfull \hbox (badness 10000) in paragraph at lines 29123--29127 []\T1/ptm/m/n/10 where el-e-ment []\T1/pcr/m/n/10 A[c(arrayindex.x, arrayindex. y)] = FUN(X[arrayindex.x], [419] [420] Underfull \hbox (badness 1210) in paragraph at lines 29270--29273 []\T1/pcr/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/pcr/m/n/10 parse(tex t=s, [421] [422] Overfull \hbox (25.98041pt too wide) in paragraph at lines 29465--29465 []\T1/pcr/m/n/9 tryCatch(parse(text = txt, srcfile = sf), error = function(e) "Syntax error.")[] [423] Underfull \hbox (badness 1478) in paragraph at lines 29495--29500 \T1/ptm/m/n/10 zero-length [][][]\T1/pcr/m/n/10 character[][][](0)[]\T1/ptm/m/n /10 . Note that when []\T1/pcr/m/n/10 collapse []\T1/ptm/m/n/10 is a string, [424] Underfull \hbox (badness 7133) in paragraph at lines 29554--29560 [][][]\T1/pcr/m/n/10 toString[][][] []\T1/ptm/m/n/10 typ-i-cally calls []\T1/pc r/m/n/10 paste(*, collapse=", ")[]\T1/ptm/m/n/10 . String ma-nip-u-la-tion with Overfull \hbox (42.18039pt too wide) in paragraph at lines 29576--29576 []\T1/pcr/m/n/9 ## Notice that the recycling rules make every input as long as the longest input.[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 29588--29588 []\T1/pcr/m/n/9 paste("1st", "2nd", "3rd", collapse = ", ") # probably not wha t you wanted[] Overfull \hbox (17.87582pt too wide) in paragraph at lines 29601--29601 []\T1/pcr/m/n/9 ## zero length arguments recycled as \TS1/cmtt/m/n/9 `\T1/pcr/ m/n/9 ""\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 -- NB: \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 { }\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 <==> character(0) here[] [425] Overfull \hbox (15.18042pt too wide) in paragraph at lines 29604--29604 []\T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 recycle0 = TRUE\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 allows standard vectorized behaviour, i.e., zero-length[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 29605--29605 []\T1/pcr/m/n/9 ## recycling resulting in zero-length result character(0):[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 29608--29608 []\T1/pcr/m/n/9 paste("The value is", val[valid], "-- not so good!") # -> ".. value is -- not .."[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 29609--29609 []\T1/pcr/m/n/9 paste("The value is", val[valid], "-- good: empty!", recycle0= TRUE) # -> character(0)[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 29612--29612 []\T1/pcr/m/n/9 paste("foo", {}, "bar", collapse = "|") # |-- > "foo bar"[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 29614--29614 []\T1/pcr/m/n/9 ## If all arguments are empty (and collapse a string), "" r esults always[] [426] [427] [428] Overfull \hbox (25.98041pt too wide) in paragraph at lines 29802--29802 []\T1/pcr/m/n/9 mtcars |> subset(cyl == 4) |> nrow() # same as nrow(subset(mt cars, cyl == 4))[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 29820--29820 []\T1/pcr/m/n/9 stop() |> (function(...) {})() # stop() is not used on RHS so is not evaluated[] [429] Underfull \hbox (badness 1360) in paragraph at lines 29875--29879 []\T1/ptm/m/n/10 All other []\T1/pcr/m/n/10 type[]\T1/ptm/m/n/10 s give a warn- ing or an er-ror; us-ing, e.g., []\T1/pcr/m/n/10 type = [430] [431] [432] [433] Underfull \hbox (badness 2277) in paragraph at lines 30189--30195 \T1/ptm/m/n/10 i.e., strictly in-clude the bounds of []\T1/pcr/m/n/10 x[]\T1/pt m/m/n/10 . New from \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0, al-low-ing [434] Overfull \hbox (0.78088pt too wide) in paragraph at lines 30224--30224 [] \T1/pcr/m/n/10 (min.n = 1, shrink.sml = 0.25, high.u.bias = 0.8, u5.bias = 1.7,[] [435] Underfull \hbox (badness 1701) in paragraph at lines 30319--30323 []\T1/ptm/m/n/10 This func-tion is al-most never used: []\TS1/cmtt/m/n/10 `\T1/ pcr/m/n/10 name\TS1/cmtt/m/n/10 ` []\T1/ptm/m/n/10 or, more care-fully, [][][]\ T1/pcr/m/n/10 get[][][](name, envir = Overfull \hbox (96.18033pt too wide) in paragraph at lines 30335--30335 []\T1/pcr/m/n/9 try(structure(mysqrt, comment = "primitive function")) # depre cation warning; soon an error[] [436] Underfull \hbox (badness 1796) in paragraph at lines 30389--30392 []\T1/ptm/m/n/10 character string (or []\T1/pcr/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/pcr/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [437] [438] [439] [440] Underfull \hbox (badness 10000) in paragraph at lines 30600--30603 []\T1/ptm/m/n/10 Option []\T1/pcr/m/n/10 width []\T1/ptm/m/n/10 con-trols the p rint-ing of vec-tors, ma-tri-ces and ar-rays, and op-tion [441] Overfull \hbox (47.58038pt too wide) in paragraph at lines 30671--30671 []\T1/pcr/m/n/9 (x <- 2^seq(-8, 30, by=1/4)) # auto-prints; by default all in "exponential" format[] [442] [443] [444] [445] [446] [447] [448] Underfull \hbox (badness 2961) in paragraph at lines 31156--31159 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/pcr/m/n/10 https : / / n etlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / [449] [450] Overfull \hbox (25.98041pt too wide) in paragraph at lines 31305--31305 [] \T1/pcr/m/n/9 c1 = rep(c(1,0,0), 2), c2 = rep(c(0,1,0), 2), c3 = rep(c(0,0,1),2))[] [451] [452] [453] [454] Overfull \hbox (15.18042pt too wide) in paragraph at lines 31598--31598 []\T1/pcr/m/n/9 (nn <- "\u0126\u0119\u1114\u022d\u2001\u03e2\u0954\u0f3f\u13d3 \u147b\u203c")[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 31609--31609 []\T1/pcr/m/n/9 n2 <- "\U0126\U0119\U1114\U022d\U2001\U03e2\U0954\U0f3f\U13d3\ U147b\U203c"[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 31615--31615 []\T1/pcr/m/n/9 ## https://cran.r-project.org/doc/manuals/r-release/R-lang.htm l#Literal-constants[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 31621--31621 []\T1/pcr/m/n/9 ## nul characters (for terminating strings in C) are not allow ed (parse errors)[] Underfull \vbox (badness 10000) has occurred while \output is active [455] [456] Underfull \hbox (badness 7415) in paragraph at lines 31718--31724 []\T1/ptm/m/n/10 Do \T1/ptm/m/it/10 not \T1/ptm/m/n/10 use []\T1/pcr/m/n/10 R.v ersion$os []\T1/ptm/m/n/10 to test the plat-form the code is run-ning on: use Overfull \hbox (42.18039pt too wide) in paragraph at lines 31742--31742 []\T1/pcr/m/n/9 mtext(R.version.string, side = 1, line = 4, adj = 1) # a usefu l bottom-right note[] [457] Overfull \hbox (6.78088pt too wide) in paragraph at lines 31788--31788 []\T1/pcr/m/n/10 set.seed(seed, kind = NULL, normal.kind = NULL, sample.kind = NULL)[] [458] [459] Underfull \hbox (badness 3713) in paragraph at lines 31931--31942 []\T1/pcr/m/n/10 normal.kind []\T1/ptm/m/n/10 can be []\T1/pcr/m/n/10 "Kinderma n-Ramage"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Buggy Kinderman-Ramage" []\T1/ptm /m/n/10 (not [460] Underfull \hbox (badness 2932) in paragraph at lines 32083--32090 \T1/ptm/m/n/10 Now see [][]$\T1/pcr/m/n/10 https : / / www . math . sci . hiros hima-[]u . ac . jp / ~m-[]mat / MT / VERSIONS / [461] [462] Underfull \hbox (badness 1533) in paragraph at lines 32201--32204 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [463] [464] [465] Overfull \hbox (42.78088pt too wide) in paragraph at lines 32354--32354 [] \T1/pcr/m/n/10 ties.method = c("average", "first", "last", "random", "m ax", "min"))[] Underfull \hbox (badness 1038) in paragraph at lines 32372--32383 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/pcr/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [466] [467] Overfull \hbox (15.18042pt too wide) in paragraph at lines 32520--32520 []\T1/pcr/m/n/9 rapply(X, function(x) x, how = "replace") -> X.; stopifnot(ide ntical(X, X.))[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 32522--32522 []\T1/pcr/m/n/9 rapply(X, deparse, control = "all") # passing extras. argument of deparse()[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 32523--32523 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character", deflt = NA_integer_, h ow = "list")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 32524--32524 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character", deflt = NA_integer_, h ow = "unlist")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 32525--32525 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character", h ow = "unlist")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 32532--32532 []\T1/pcr/m/n/9 rapply(E, nchar, classes = "character", deflt = NA_integer_, h ow = "unlist")[] [468] [469] [470] [471] [472] Overfull \hbox (25.98041pt too wide) in paragraph at lines 32842--32842 []\T1/pcr/m/n/9 ## Bit representation [ sign | exponent | mantissa ] of doubl e prec numbers :[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 32844--32844 []\T1/pcr/m/n/9 bitC <- function(x) noquote(vapply(as.double(x), function(x) { # split one double[] Overfull \hbox (74.58035pt too wide) in paragraph at lines 32854--32854 []\T1/pcr/m/n/9 d2bI <- function(x) vapply(as.double(x), function(x) intToBits (numToInts(x)), raw(64L))[] Overfull \hbox (74.58035pt too wide) in paragraph at lines 32855--32855 []\T1/pcr/m/n/9 d2b <- function(x) vapply(as.double(x), function(x) numToBits(x) , raw(64L))[] Underfull \vbox (badness 10000) has occurred while \output is active [473] Underfull \hbox (badness 6300) in paragraph at lines 32924--32926 []\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr it-ing R Ex-ten-sions' man-ual: [474] Underfull \hbox (badness 4048) in paragraph at lines 32950--32955 []\T1/ptm/m/n/10 Either an ob-ject whose mode will give the mode of the vec-tor to Underfull \hbox (badness 4582) in paragraph at lines 32950--32955 \T1/ptm/m/n/10 be read, or a char-ac-ter vec-tor of length one de-scrib-ing the mode: Underfull \hbox (badness 1824) in paragraph at lines 32950--32955 \T1/ptm/m/n/10 one of []\T1/pcr/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/pcr/m/ n/10 "double"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "integer"[]\T1/ptm/m/n/10 , [] \T1/pcr/m/n/10 "int"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/ 10 , [475] [476] [477] [478] [479] [480] [481] [482] Underfull \hbox (badness 2080) in paragraph at lines 33491--33501 []\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 infoRDS[]\T1/ptm/m/n/10 , an \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 list with el-e-ments []\T1/pcr/m/n/10 version []\T1/ptm/m/n /10 (ver-sion num-ber, cur-rently 2 or 3), Overfull \hbox (4.38043pt too wide) in paragraph at lines 33528--33528 []\T1/pcr/m/n/9 ## or examine the object via a connection, which will be opene d as needed.[] [483] [484] [485] [486] [487] [488] [489] Underfull \hbox (badness 7558) in paragraph at lines 34053--34057 []\T1/pcr/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1968) in paragraph at lines 34063--34065 []\T1/ptm/m/n/10 This help page is based on the TRE doc-u-men-ta-tion and the P OSIX stan-dard, and the [490] Underfull \hbox (badness 10000) in paragraph at lines 34074--34076 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/pcr/m/n/10 https : / / pubs . opengroup . org / onlinepubs / Underfull \hbox (badness 1975) in paragraph at lines 34077--34081 []\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/pc r/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/pcr/m /n/10 https : / / www . [491] [492] [493] [494] [495] Overfull \hbox (4.38043pt too wide) in paragraph at lines 34449--34449 []\T1/pcr/m/n/9 rep(1:4, each = 2, times = 3) # length 24, 3 complete replications[] [496] Underfull \hbox (badness 10000) in paragraph at lines 34520--34524 [][][]\T1/pcr/m/n/10 TRUE[][][] [][]FALSE[][][] [][]NULL[][][] [][]Inf[][][] [] []NaN[][][] [][]NA[][][] [][]NA_integer_[][][] [][]NA_real_[][][] [][]NA_comple x_[][][] [497] [498] [499] Underfull \hbox (badness 2302) in paragraph at lines 34753--34756 []\T1/pcr/m/n/10 signif []\T1/ptm/m/n/10 rounds the val-ues in its first ar-gu- ment to the spec-i-fied num-ber of \T1/ptm/m/it/10 sig-nif-i-cant Underfull \hbox (badness 1824) in paragraph at lines 34753--34756 \T1/ptm/m/n/10 dig-its. Hence, for []\T1/pcr/m/n/10 numeric x[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 signif(x, dig) []\T1/ptm/m/n/10 is the same as []\T1/pcr/m/n/ 10 round(x, dig - [500] [501] Overfull \hbox (12.78088pt too wide) in paragraph at lines 34883--34883 [] \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y ears"))[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 34886--34886 [] \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y ears"),[] [502] Overfull \hbox (12.78088pt too wide) in paragraph at lines 34893--34893 [] \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y ears"),[] [503] [504] [505] [506] [507] [508] Overfull \hbox (66.78088pt too wide) in paragraph at lines 35341--35341 [] \T1/pcr/m/n/10 useHash = (n > 1e+07 && !replace && is.null(prob) && size <= n/2))[] [509] [510] [511] [512] [513] [514] [515] Overfull \hbox (12.78088pt too wide) in paragraph at lines 35782--35782 [] \T1/pcr/m/n/10 fileEncoding = "", encoding = "unknown", text, skipNul = FALSE)[] [516] Underfull \hbox (badness 1158) in paragraph at lines 35886--35891 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [517] [518] Overfull \hbox (15.18042pt too wide) in paragraph at lines 36072--36072 []\T1/pcr/m/n/9 cat("TITLE extra line", "2 3 5 7", "11 13 17", file = "ex.data ", sep = "\n") [519] [520] [521] [522] Underfull \hbox (badness 4752) in paragraph at lines 36332--36335 []\T1/ptm/m/n/10 The fourth form gen-er-ates the in-te-ger se-quence []\T1/pcr/ m/n/10 1, 2, ..., length(along.with)[]\T1/ptm/m/n/10 . Underfull \hbox (badness 5563) in paragraph at lines 36336--36342 []\T1/ptm/m/n/10 The fifth form gen-er-ates the se-quence []\T1/pcr/m/n/10 1, 2 , ..., length(from) []\T1/ptm/m/n/10 (as if ar-gu-ment [523] Underfull \hbox (badness 1845) in paragraph at lines 36445--36448 []\T1/ptm/m/n/10 A vec-tor of class []\T1/pcr/m/n/10 "Date"[]\T1/ptm/m/n/10 . T ype []\T1/pcr/m/n/10 "[][]integer[][][]" []\T1/ptm/m/n/10 is of-ten pre-served on pur-pose, sav-ing [524] Overfull \hbox (31.3804pt too wide) in paragraph at lines 36466--36466 []\T1/pcr/m/n/9 ## find all 7th of the month _strictly_ inside two dates, the last being a 7th.[] [525] [526] [527] [528] [529] [530] [531] Underfull \hbox (badness 6094) in paragraph at lines 36963--36967 []\T1/pcr/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in- te-ger con-nec-tion de-scrip-tors for use Underfull \hbox (badness 6559) in paragraph at lines 36963--36967 \T1/ptm/m/n/10 with []\T1/pcr/m/n/10 getConnection[]\T1/ptm/m/n/10 , cor-re-spo nd-ing to the row names of the ta-ble re-turned by [532] [533] Underfull \hbox (badness 3826) in paragraph at lines 37054--37065 []\T1/ptm/m/n/10 In Win-dows, com-mand line in-ter-pre-ta-tion is done by the a p-pli-ca-tion as well as the Underfull \hbox (badness 3492) in paragraph at lines 37054--37065 \T1/ptm/m/n/10 shell. It may de-pend on the com-piler used: Mi-crosoft's rules for the C run-time Underfull \hbox (badness 10000) in paragraph at lines 37054--37065 \T1/ptm/m/n/10 are given at [][]$\T1/pcr/m/n/10 https : / / learn . microsoft . com / en-[]us / cpp / c-[]language / Underfull \hbox (badness 1635) in paragraph at lines 37054--37065 \T1/pcr/m/n/10 parsing-[]c-[]command-[]line-[]arguments ? view = msvc-[]160$[][ ]\T1/ptm/m/n/10 . It may de-pend on the [534] [535] [536] [537] [538] [539] [540] [541] Overfull \hbox (66.78088pt too wide) in paragraph at lines 37606--37606 [] \T1/pcr/m/n/10 method = c("auto", "shell", "quick", "radix"), index .return = FALSE)[] [542] [543] [544] [545] Overfull \hbox (9.78043pt too wide) in paragraph at lines 37897--37897 []\T1/pcr/m/n/9 sort_by.data.frame(mtcars, ~ list(am, -mpg)) |> subset(select = c(am, mpg))[] [546] Overfull \hbox (6.78088pt too wide) in paragraph at lines 37935--37935 [] \T1/pcr/m/n/10 print. = TRUE, echo = TRUE, max.deparse.length = Inf,[] Overfull \hbox (42.78088pt too wide) in paragraph at lines 37937--37937 [] \T1/pcr/m/n/10 deparseCtrl = c("keepInteger", "showAttributes" , "keepNA"),[] [547] Underfull \hbox (badness 4954) in paragraph at lines 37981--37987 [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 vec-tor, passed as []\T1/ pcr/m/n/10 control []\T1/ptm/m/n/10 to [][][]\T1/pcr/m/n/10 deparse[][][]()[]\T 1/ptm/m/n/10 , see also Underfull \hbox (badness 5050) in paragraph at lines 37981--37987 [][][]\T1/pcr/m/n/10 .deparseOpts[][][][]\T1/ptm/m/n/10 . In \T1/phv/m/n/10 R \ T1/ptm/m/n/10 ver-sion <= 3.3.x, this was hard-coded to [548] Overfull \hbox (20.58041pt too wide) in paragraph at lines 38089--38089 []\T1/pcr/m/n/9 ## (all should look "as if on top level", e.g. non-assignments should print:)[] [549] [550] [551] [552] [553] Overfull \hbox (4.38043pt too wide) in paragraph at lines 38452--38452 []\T1/pcr/m/n/9 ### Calculate \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 z-scores\TS1/pcr/m /n/9 ' \T1/pcr/m/n/9 by group (standardize to mean zero, variance one)[] [554] Overfull \hbox (4.38043pt too wide) in paragraph at lines 38467--38467 []\T1/pcr/m/n/9 ## Notice that assignment form is not used since a variable is being added[] [555] [556] Underfull \hbox (badness 10000) in paragraph at lines 38693--38695 [][][]$\T1/pcr/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / [557] [558] [559] [560] Overfull \hbox (12.78088pt too wide) in paragraph at lines 38919--38919 []\T1/pcr/m/n/10 srcfile(filename, encoding = getOption("encoding"), Enc = "un known") Overfull \hbox (12.78088pt too wide) in paragraph at lines 38920--38920 []\T1/pcr/m/n/10 srcfilecopy(filename, lines, timestamp = Sys.time(), isFile = FALSE)[] [561] [562] Underfull \hbox (badness 2828) in paragraph at lines 39119--39127 []\T1/ptm/m/n/10 Stack over-flow er-rors can be caught and han-dled by ex-it-in g han-dlers es-tab-lished with [563] [564] Overfull \hbox (63.78036pt too wide) in paragraph at lines 39250--39250 []\T1/pcr/m/n/9 startsWith(search(), "package:") # typically at least two FALS E, nowadays often three [565] [566] Underfull \hbox (badness 6110) in paragraph at lines 39346--39356 []\T1/ptm/m/n/10 A func-tion []\T1/pcr/m/n/10 .First []\T1/ptm/m/n/10 (and [][] []\T1/pcr/m/n/10 .Last[][][][]\T1/ptm/m/n/10 ) can be de-fined in ap-pro-pri-at e `\T1/pcr/m/n/10 .Rprofile\T1/ptm/m/n/10 ' or Underfull \hbox (badness 2635) in paragraph at lines 39346--39356 \T1/ptm/m/n/10 `\T1/pcr/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' files or have been saved in `\T1/pcr/m/n/10 .RData\T1/ptm/m/n/10 '. If you want a dif-fer-ent Underfull \hbox (badness 1237) in paragraph at lines 39346--39356 \T1/ptm/m/n/10 set of pack-ages than the de-fault ones when you start, in-sert a call to [][][]\T1/pcr/m/n/10 options[][][] []\T1/ptm/m/n/10 in the Underfull \hbox (badness 1231) in paragraph at lines 39346--39356 \T1/pcr/m/n/10 = character()) []\T1/ptm/m/n/10 will at-tach no ex-tra pack-ages on startup (only the \T1/ptm/b/n/10 base \T1/ptm/m/n/10 pack-age) (or Underfull \hbox (badness 1112) in paragraph at lines 39346--39356 \T1/ptm/m/n/10 set []\T1/pcr/m/n/10 R_DEFAULT_PACKAGES=NULL []\T1/ptm/m/n/10 as an en-vi-ron-ment vari-able be-fore run-ning \T1/phv/m/n/10 R\T1/ptm/m/n/10 ). Us-ing Underfull \hbox (badness 10000) in paragraph at lines 39402--39408 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/pcr/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 39402--39408 \T1/ptm/m/n/10 and `\T1/pcr/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1496) in paragraph at lines 39402--39408 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/pcr/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/pcr/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be [567] Underfull \hbox (badness 1460) in paragraph at lines 39417--39424 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/pcr/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 39417--39424 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 39417--39424 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Overfull \hbox (4.38043pt too wide) in paragraph at lines 39477--39477 []\T1/pcr/m/n/9 # Variable expansion in double quotes, string literals with ba ckslashes in[] [568] [569] Underfull \hbox (badness 5985) in paragraph at lines 39564--39567 []\T1/ptm/m/n/10 The de-fault han-dler stores the er-ror mes-sage in a buffer; it can be re-trieved by Underfull \hbox (badness 1460) in paragraph at lines 39564--39567 []\T1/pcr/m/n/10 geterrmessage()[]\T1/ptm/m/n/10 . It also stores a trace of th e call stack that can be re-trieved by [570] Underfull \hbox (badness 1484) in paragraph at lines 39652--39656 []\T1/ptm/m/n/10 alternative to []\T1/pcr/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/pcr/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [571] Overfull \hbox (60.78088pt too wide) in paragraph at lines 39712--39712 [] \T1/pcr/m/n/10 assert <- function(exprs) eval.parent(substitute(stopifnot(e xprs = exprs))) Overfull \hbox (9.78043pt too wide) in paragraph at lines 39738--39738 []\T1/pcr/m/n/9 stopifnot(all.equal(pi, 3.141593), 2 < 2, (1:10 < 12), "a" < "b") |> try()[] [572] Overfull \hbox (25.98041pt too wide) in paragraph at lines 39754--39754 []\T1/pcr/m/n/9 stopifnot(all.equal(rep(list(pi),4), list(3.1, 3.14, 3.141, 3. 1415))) |> try()[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 39762--39762 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 {Yes, learn how to use do.c all(substitute, ...) in a powerful manner !!}[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 39764--39764 []\T1/pcr/m/n/9 bdy <- do.call(substitute, list(bdy, list(stopifnot = quote(warnifnot))))[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 39765--39765 []\T1/pcr/m/n/9 bdy[[N-1]] <- do.call(substitute, list(bdy[[N-1]], list(stop = quote(warning))))[] [573] Underfull \hbox (badness 1436) in paragraph at lines 39829--39833 []\T1/ptm/m/n/10 integer de-ter-min-ing the []\T1/pcr/m/n/10 format()[]\T1/ptm/ m/n/10 ing of sec-onds when needed. Note [574] [575] [576] [577] [578] Overfull \hbox (8.42813pt too wide) in paragraph at lines 40235--40235 []\T1/pcr/m/n/9 ## time with fractional seconds (setting \TS1/cmtt/m/n/9 `\T1/ pcr/m/n/9 tz = ..\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 for reproducible output)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 40237--40237 []\T1/pcr/m/n/9 z3 # prints without fractional seconds by default, digits.sec = NULL ("= 0")[] [579] Overfull \hbox (9.78043pt too wide) in paragraph at lines 40270--40270 []\T1/pcr/m/n/9 format(s1 <- seq.Date(as.Date(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 19 78-01-01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), by = \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 day \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 , len = 7), "%a")[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 40271--40271 []\T1/pcr/m/n/9 format(s2 <- seq.Date(as.Date(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 20 00-01-01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), by = \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 mon th\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 , len = 12), "%b")[] [580] Overfull \hbox (0.78088pt too wide) in paragraph at lines 40383--40383 [] \T1/pcr/m/n/10 add the string to the left of the match to the ou tput.[] [581] [582] [583] [584] Overfull \hbox (6.78088pt too wide) in paragraph at lines 40661--40661 [] \T1/pcr/m/n/10 exdent = 0, prefix = "", simplify = TRUE, initial = p refix)[] [585] Overfull \hbox (4.38043pt too wide) in paragraph at lines 40705--40705 []\T1/pcr/m/n/9 x <- paste(readLines(file.path(R.home("doc"), "THANKS")), coll apse = "\n")[] [586] [587] [588] [589] [590] [591] [592] Overfull \hbox (52.98038pt too wide) in paragraph at lines 41155--41155 []\T1/pcr/m/n/9 ## In fact, you can pass vectors into several arguments, and e verything gets added.[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 41158--41158 []\T1/pcr/m/n/9 ## If there are missing values, the sum is unknown, i.e., also missing, ....[] [593] Overfull \hbox (36.78088pt too wide) in paragraph at lines 41198--41198 []\T1/pcr/m/n/10 format(x, digits = max(3L, getOption("digits") - 3L), zdigits = 4L, ...)[] Overfull \hbox (36.78088pt too wide) in paragraph at lines 41200--41200 [] \T1/pcr/m/n/10 print(x, digits = max(3L, getOption("digits") - 3L), zdigits = 4L, ...)[] [594] Overfull \hbox (4.38043pt too wide) in paragraph at lines 41270--41270 []\T1/pcr/m/n/9 summary(attenu, digits = 4) #-> summary.data.frame(...), defau lt precision [595] [596] [597] [598] [599] Overfull \hbox (31.3804pt too wide) in paragraph at lines 41590--41590 [] \T1/pcr/m/n/9 cat(ch,":", switch(EXPR = ch, a =, A = 1, b = 2:3, "Otherw ise: last"),"\n")[] [600] [601] [602] Overfull \hbox (20.58041pt too wide) in paragraph at lines 41800--41800 []\T1/pcr/m/n/9 if(.Platform$OS.type == "unix") ## on Unix-alikes such Linux, macOS, FreeBSD:[] Underfull \hbox (badness 2293) in paragraph at lines 41830--41836 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de- Underfull \hbox (badness 1237) in paragraph at lines 41830--41836 \T1/ptm/m/n/10 tails of wild-cards ex-pan-sion, see your sys-tem's doc-u-men-ta -tion on the []\T1/pcr/m/n/10 glob []\T1/ptm/m/n/10 sys-tem call. [603] Underfull \hbox (badness 4792) in paragraph at lines 41848--41853 []\T1/ptm/m/n/10 If a file-name starts with []\T1/pcr/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple Underfull \hbox (badness 1107) in paragraph at lines 41848--41853 []\T1/pcr/m/n/10 Sys.glob("*.RData") []\T1/ptm/m/n/10 may or may not match `\T1 /pcr/m/n/10 .RData\T1/ptm/m/n/10 ' but will not usu-ally match [604] [605] [606] [607] Underfull \hbox (badness 10000) in paragraph at lines 42140--42144 []\T1/pcr/m/n/10 sys.status() []\T1/ptm/m/n/10 re-turns a list with com-po-nent s []\T1/pcr/m/n/10 sys.calls[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sys.parents []\ T1/ptm/m/n/10 and Underfull \hbox (badness 1584) in paragraph at lines 42155--42158 []\T1/pcr/m/n/10 sys.call []\T1/ptm/m/n/10 re-turns a call, []\T1/pcr/m/n/10 sy s.function []\T1/ptm/m/n/10 a func-tion def-i-ni-tion, and []\T1/pcr/m/n/10 sys .frame []\T1/ptm/m/n/10 and [608] [609] Overfull \hbox (25.98041pt too wide) in paragraph at lines 42293--42293 []\T1/pcr/m/n/9 is.symlink <- function(paths) isTRUE(nzchar(Sys.readlink(paths ), keepNA=TRUE))[] [610] Overfull \hbox (19.22812pt too wide) in paragraph at lines 42373--42373 []\T1/pcr/m/n/9 print(Sys.setenv(R_TEST = "testit", "A+C" = 123)) # \TS1/cmtt /m/n/9 `\T1/pcr/m/n/9 A+C\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 could also be used [611] [612] [613] Underfull \hbox (badness 1082) in paragraph at lines 42518--42521 []\T1/ptm/m/n/10 logical. If []\T1/pcr/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see Underfull \hbox (badness 10000) in paragraph at lines 42545--42547 [][][]\T1/pcr/m/n/10 source[][][][]\T1/ptm/m/n/10 , and [][][]\T1/pcr/m/n/10 lo adNamespace[][][] []\T1/ptm/m/n/10 which is called from [][][]\T1/pcr/m/n/10 li brary[][][](.) []\T1/ptm/m/n/10 and uses [614] [615] [616] Underfull \hbox (badness 1038) in paragraph at lines 42712--42715 []\T1/ptm/m/n/10 a log-i-cal (not []\T1/pcr/m/n/10 NA[]\T1/ptm/m/n/10 ) in-di-c at-ing whether mes-sages writ-ten to `\T1/pcr/m/n/10 stdout\T1/ptm/m/n/10 ' or [617] [618] [619] [620] [621] [622] Underfull \hbox (badness 1442) in paragraph at lines 43096--43100 \T1/ptm/m/n/10 con-sider it to be piped or redi-rected: []\T1/pcr/m/n/10 stdout = TRUE []\T1/ptm/m/n/10 uses a pipe whereas []\T1/pcr/m/n/10 stdout = [623] [624] [625] Underfull \hbox (badness 4096) in paragraph at lines 43354--43357 []\T1/ptm/m/n/10 Use [][][]\T1/pcr/m/n/10 ftable[][][] []\T1/ptm/m/n/10 for pri nt-ing (and more) of mul-ti-di-men-sional ta-bles. [][][]\T1/pcr/m/n/10 margin. table[][][][]\T1/ptm/m/n/10 , [626] [627] Underfull \hbox (badness 7888) in paragraph at lines 43469--43473 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/pcr/m/n/10 bin []\T1/ptm/m/n/10 can have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/pcr/ m/n/10 length(bin) > [628] [629] [630] [631] Overfull \hbox (63.78036pt too wide) in paragraph at lines 43731--43731 [] \T1/pcr/m/n/9 matrix(c(1L, 2L, NA, 3L), 2, dimnames = list(c("1" , "2"), c("A", "B")))),[] Overfull \hbox (30.0281pt too wide) in paragraph at lines 43733--43733 [] \T1/pcr/m/n/9 array(list(\TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 2\TS1/cm tt/m/n/9 ` \T1/pcr/m/n/9 = structure(c(2, 5.75, 9.5, 13.25, 17), names = nq),[] Overfull \hbox (55.67578pt too wide) in paragraph at lines 43735--43735 [] \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 4\TS1/cmtt/m/n/9 ` \T1/pcr/m /n/9 = NULL, \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 5\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 = NULL), dim=4, dimnames=list(as.character(2:5)))))[] Underfull \hbox (badness 10000) in paragraph at lines 43748--43750 []\T1/pcr/m/n/10 removeTaskCallback []\T1/ptm/m/n/10 un-registers a func-tion t hat was reg-is-tered ear-lier via [632] [633] [634] Underfull \hbox (badness 3872) in paragraph at lines 43947--43950 []\T1/ptm/m/n/10 Duncan Tem-ple Lang (2001) \T1/ptm/m/it/10 Top-level Task Call -backs in R\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / developer . [635] [636] [637] [638] [639] [640] [641] Underfull \hbox (badness 1655) in paragraph at lines 44436--44443 \T1/ptm/m/n/10 may also be known as `[]\T1/pcr/m/n/10 GB[]\T1/ptm/m/n/10 ', `[] \T1/pcr/m/n/10 GB-Eire[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 Europe/Belfast[]\T1 /ptm/m/n/10 ', `[]\T1/pcr/m/n/10 Europe/Guernsey[]\T1/ptm/m/n/10 ', Underfull \hbox (badness 2253) in paragraph at lines 44444--44449 []\T1/pcr/m/n/10 OlsonNames []\T1/ptm/m/n/10 re-turns a char-ac-ter vec-tor, se e the ex-am-ples for typ-i-cal cases. It may Underfull \hbox (badness 1655) in paragraph at lines 44444--44449 \T1/ptm/m/n/10 have an at-tribute []\T1/pcr/m/n/10 "Version"[]\T1/ptm/m/n/10 , some-thing like `[]\T1/pcr/m/n/10 "2023a"[]\T1/ptm/m/n/10 '. (It does on sys-te ms us-ing [642] Underfull \hbox (badness 4467) in paragraph at lines 44498--44507 []\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 OlsonNames []\T1/ptm/m/n/10 re- turns the time-zone names known to the cur-rently se- Underfull \hbox (badness 3954) in paragraph at lines 44498--44507 \T1/ptm/m/n/10 lected Ol-son/IANA database. The system-specific lo-ca-tion in t he file sys-tem varies, [643] Underfull \hbox (badness 1337) in paragraph at lines 44595--44603 \T1/ptm/m/n/10 a file `\T1/pcr/m/n/10 localtime\T1/ptm/m/n/10 ', usu-ally un-de r `\T1/pcr/m/n/10 /etc\T1/ptm/m/n/10 ' (but pos-si-bly un-der `\T1/pcr/m/n/10 / usr/local/etc\T1/ptm/m/n/10 ' or Underfull \hbox (badness 10000) in paragraph at lines 44604--44607 []\T1/ptm/m/n/10 `Because the time zone iden-ti-fier is ex-tracted from the sym -link tar-get name of [644] Underfull \hbox (badness 3460) in paragraph at lines 44663--44666 [][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / data . iana . org / Underfull \hbox (badness 4429) in paragraph at lines 44667--44669 [][][]$\T1/pcr/m/n/10 https : / / data . iana . org / time-[]zones / theory . h tml$[][] \T1/ptm/m/n/10 for the `rules' of the Ol- Overfull \hbox (31.3804pt too wide) in paragraph at lines 44676--44676 []\T1/pcr/m/n/9 ## typically some acronyms/aliases such as "UTC", "NZ", "MET", "Eire", ..., but[] [645] [646] [647] [648] [649] Overfull \hbox (15.18042pt too wide) in paragraph at lines 45017--45017 []\T1/pcr/m/n/9 trace(pt, tracer = quote(cat(sprintf("tracing pt(*, ncp = %.15 g)\n", ncp))),[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 45019--45019 []\T1/pcr/m/n/9 power.t.test(20, 1, power=0.8, sd=NULL) ##--> showing the ncp root finding:[] [650] [651] Overfull \hbox (84.78088pt too wide) in paragraph at lines 45116--45116 [] \T1/pcr/m/n/10 getOption("deparse .max.lines", -1L)))[] Overfull \hbox (84.78088pt too wide) in paragraph at lines 45118--45118 [] \T1/pcr/m/n/10 getOption("deparse .max.lines", -1L)))[] [652] [653] [654] Underfull \hbox (badness 6542) in paragraph at lines 45392--45394 []\T1/pcr/m/n/10 cospi(x)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sinpi(x)[]\T1/ptm/ m/n/10 , and []\T1/pcr/m/n/10 tanpi(x)[]\T1/ptm/m/n/10 , com-pute []\T1/pcr/m/n /10 cos(pi*x)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sin(pi*x)[]\T1/ptm/m/n/10 , an d [655] [656] Overfull \hbox (30.78088pt too wide) in paragraph at lines 45511--45511 []\T1/pcr/m/n/10 trimws(x, which = c("both", "left", "right"), whitespace = "[ \t\r\n]") [657] Underfull \hbox (badness 1708) in paragraph at lines 45579--45587 []\T1/pcr/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 3713) in paragraph at lines 45579--45587 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/pcr/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [658] Underfull \hbox (badness 4859) in paragraph at lines 45619--45624 [][][]\T1/pcr/m/n/10 options[][][] []\T1/ptm/m/n/10 for set-ting er-ror han-dle rs and sup-press-ing the print-ing of er-ror mes-sages; [659] Underfull \hbox (badness 3895) in paragraph at lines 45681--45694 []\T1/ptm/m/n/10 A char-ac-ter string. The pos-si-ble val-ues are listed in the struc-ture []\T1/pcr/m/n/10 TypeTable []\T1/ptm/m/n/10 in Underfull \hbox (badness 1303) in paragraph at lines 45681--45694 \T1/ptm/m/n/10 `\T1/pcr/m/n/10 src/main/util.c\T1/ptm/m/n/10 '. Cur-rent val-ue s are the vec-tor types []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/ m/n/10 "integer"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 2452) in paragraph at lines 45681--45694 []\T1/pcr/m/n/10 "promise"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "object"[]\T1/ptm /m/n/10 , []\T1/pcr/m/n/10 "language"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "char" []\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "..."[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "a ny"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "expression"[]\T1/ptm/m/n/10 , [660] [661] [662] [663] [664] Overfull \hbox (9.78043pt too wide) in paragraph at lines 46034--46034 []\T1/pcr/m/n/9 ll <- list(as.name("sinc"), quote( a + b ), 1:10, letters, exp ression(1+x))[] [665] [666] [667] Underfull \hbox (badness 1137) in paragraph at lines 46173--46180 []\T1/ptm/m/n/10 When a func-tion call-ing []\T1/pcr/m/n/10 UseMethod("fun") [] \T1/ptm/m/n/10 is ap-plied to an ob-ject with class vec-tor [668] [669] [670] [671] [672] Overfull \hbox (4.38043pt too wide) in paragraph at lines 46552--46552 []\T1/pcr/m/n/9 (xx <- intToUtf8(x, , TRUE)) # will only display in some local es and fonts[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 46561--46561 []\T1/pcr/m/n/9 system(paste("od -x", foo)) # 2-byte units, correct on little- endian platforms[] [673] Underfull \hbox (badness 1721) in paragraph at lines 46623--46640 [][][]\T1/pcr/m/n/10 file.rename[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 f ile.symlink[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 dir.create[][][][]\ T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 dir.exists[][][][]\T1/ptm/m/n/10 , [][][]\ T1/pcr/m/n/10 normalizePath[][][][]\T1/ptm/m/n/10 , [674] Overfull \hbox (36.7804pt too wide) in paragraph at lines 46725--46725 []\T1/pcr/m/n/9 try( substr(x, 1,1) ) # gives \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 in valid multibyte string\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 error in a UTF-8 locale[] [675] Underfull \hbox (badness 1803) in paragraph at lines 46788--46791 []\T1/ptm/m/n/10 The atomic modes are []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/1 0 , []\T1/pcr/m/n/10 "integer"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "numeric" []\ T1/ptm/m/n/10 (syn-onym []\T1/pcr/m/n/10 "double"[]\T1/ptm/m/n/10 ), Underfull \hbox (badness 3471) in paragraph at lines 46792--46798 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 mode = "any"[]\T1/ptm/m/n/10 , []\T1/pcr/m /n/10 is.vector []\T1/ptm/m/n/10 may re-turn []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/ n/10 for the atomic modes, [][][]\T1/pcr/m/n/10 list[][][] []\T1/ptm/m/n/10 and [676] [677] [678] Underfull \hbox (badness 1014) in paragraph at lines 47020--47023 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me -di-ately, even if [679] [680] Overfull \hbox (36.78088pt too wide) in paragraph at lines 47129--47129 [] \T1/pcr/m/n/10 header = ngettext(n, "Warning message:\n", "Warning mes sages:\n"),[] [681] Overfull \hbox (4.38043pt too wide) in paragraph at lines 47206--47206 []\T1/pcr/m/n/9 ## at the end prints all three warnings, from the \TS1/pcr/m/n /9 '\T1/pcr/m/n/9 option(warn = 0)\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 above[] Overfull \hbox (90.78033pt too wide) in paragraph at lines 47214--47214 []\T1/pcr/m/n/9 x <- 1:36; for(n in 1:13) for(m in 1:12) A <- matrix(x, n,m) # There were 105 warnings ...[] [682] Underfull \hbox (badness 1783) in paragraph at lines 47279--47281 []\T1/pcr/m/n/10 weekdays []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 months []\T1/pt m/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e., [683] Overfull \hbox (25.98041pt too wide) in paragraph at lines 47309--47309 []\T1/pcr/m/n/9 ## Show how easily you get month, day, year, day (of {month, w eek, yr}), ... :[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 47321--47321 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 Even simpler: Date -> Matrix - dropping time info {sec,min,hour, isdst}[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 47324--47324 []\T1/pcr/m/n/9 d2mat(seq(as.Date("2000-02-02"), by=1, length.out=30)) # has R 1.0.0\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s release date[] [684] Underfull \hbox (badness 10000) in paragraph at lines 47386--47391 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 arr.ind == TRUE []\T1/ptm/m/n/10 and []\T1 /pcr/m/n/10 x []\T1/ptm/m/n/10 is an [][][]\T1/pcr/m/n/10 array[][][] []\T1/ptm /m/n/10 (has a [][][]\T1/pcr/m/n/10 dim[][][] []\T1/ptm/m/n/10 at-tribute), the re-sult is Underfull \hbox (badness 2564) in paragraph at lines 47386--47391 []\T1/pcr/m/n/10 arrayInd(which(x), dim(x), dimnames(x))[]\T1/ptm/m/n/10 , name ly a ma-trix whose rows each [685] Underfull \hbox (badness 2818) in paragraph at lines 47484--47490 []\T1/ptm/m/n/10 For a [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 vec- tor []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 with both []\T1/pcr/m/n/10 FALSE []\T1/ ptm/m/n/10 and []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 val-ues, []\T1/pcr/m/n/10 which.min(x) []\T1/ptm/m/n/10 and [686] Overfull \hbox (15.18042pt too wide) in paragraph at lines 47519--47519 []\T1/pcr/m/n/9 ## Find the first occurrence, i.e. the first TRUE, if there is at least one:[] [687] [688] [689] [690] [691] [692] [693] Underfull \hbox (badness 2846) in paragraph at lines 48015--48019 []\T1/pcr/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [694] Overfull \hbox (4.38043pt too wide) in paragraph at lines 48055--48055 []\T1/pcr/m/n/9 .packages(all.available = TRUE) # return all available as char acter vector[] Underfull \hbox (badness 3209) in paragraph at lines 48076--48080 []\T1/pcr/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da rd' reg-exps, in-clud-ing el-e-ments named [695]) (./compiler-pkg.tex [696] Chapter 2. [697] Underfull \hbox (badness 2884) in paragraph at lines 107--121 []\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 options []\T1/ptm/m/n/10 ar-gu-ment can b e used to con-trol com-piler op-er-a-tion. There are cur- Underfull \hbox (badness 10000) in paragraph at lines 107--121 \T1/ptm/m/n/10 rently four op-tions: []\T1/pcr/m/n/10 optimize[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 suppressAll[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 suppressUndef ined[]\T1/ptm/m/n/10 , and [698] [699] [700]) (./datasets-pkg.tex Chapter 3. [701] [702] [703] [704] [705] Overfull \hbox (15.18042pt too wide) in paragraph at lines 297--297 [] \T1/pcr/m/n/9 plot(ff, data = anscombe, col = "red", pch = 21, bg = "orang e", cex = 1.2,[] [706] Overfull \hbox (4.38043pt too wide) in paragraph at lines 375--375 []\T1/pcr/m/n/9 coplot(accel ~ dist | as.factor(event), data = attenu, show.gi ven = FALSE)[] [707] [708] [709] Overfull \hbox (4.38043pt too wide) in paragraph at lines 613--613 [] \T1/pcr/m/n/9 start = c(lrc = log(.35)), algorithm = "plinear", t race = TRUE)[] [710] [711] Underfull \hbox (badness 4779) in paragraph at lines 700--703 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr oupedData", "groupedData", [712] [713] Underfull \hbox (badness 4779) in paragraph at lines 832--835 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr oupedData", "groupedData", [714] [715] Underfull \hbox (badness 1097) in paragraph at lines 1034--1038 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [716] [717] Underfull \hbox (badness 4779) in paragraph at lines 1149--1152 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr oupedData", "groupedData", [718] [719] [720] [721] [722] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1463--1463 []\T1/pcr/m/n/9 plot(names(te), te, type = "h", main = f.tit, xlab = "Eruption time (sec)")[] [723] [724] Underfull \hbox (badness 10000) in paragraph at lines 1548--1551 []\T1/ptm/m/n/10 Finally, []\T1/pcr/m/n/10 freeny []\T1/ptm/m/n/10 is a data fr ame with vari-ables []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lag.q uarterly.revenue[]\T1/ptm/m/n/10 , Underfull \hbox (badness 2903) in paragraph at lines 1548--1551 []\T1/pcr/m/n/10 price.index[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 income.level[]\ T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 market.potential []\T1/ptm/m/n/10 ob-taine d from the above [725] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1641--1641 [] \T1/pcr/m/n/9 xlab = "Hip Angle", ylab = "Knee Angle", main = "\TS1/pcr /m/n/9 '\T1/pcr/m/n/9 gait\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 data : Boy 1")[] Overfull \hbox (112.38031pt too wide) in paragraph at lines 1643--1643 []\T1/pcr/m/n/9 matlines(gait[, -1, 1], gait[, -1, 2], type = "l", lty = 1, co l = adjustcolor("thistle", 1/3))[] [726] [727] [728] Underfull \hbox (badness 4779) in paragraph at lines 1809--1812 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr oupedData", "groupedData", [729] [730] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1907--1907 []\T1/pcr/m/n/9 model1 <- glm(case ~ spontaneous+induced, data = infert, famil y = binomial())[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1915--1915 [] \T1/pcr/m/n/9 model3 <- clogit(case ~ spontaneous+induced+strata(stratum), data = infert)[] [731] [732] Overfull \hbox (25.98041pt too wide) in paragraph at lines 2032--2032 []\T1/pcr/m/n/9 ## Iris versicolor "differs twice as much from I. setosa as fr om I. virginica"[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2037--2037 []\T1/pcr/m/n/9 ## equivalence of legacy array (iris3) and data.frame (iris) r epresentation[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2041--2041 [] \T1/pcr/m/n/9 sub(" W.",".Width", dn i3[[2]])))),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2042--2042 [] \T1/pcr/m/n/9 Species = gl(3, 50, labels = sub("S", "s", sub("V", "v", d ni3[[3]]))))[] [733] [734] [735] Underfull \hbox (badness 4779) in paragraph at lines 2245--2248 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr oupedData", "groupedData", [736] [737] [738] [739] [740] [741] [742] [743] [744] [745] Underfull \hbox (badness 4779) in paragraph at lines 2810--2813 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr oupedData", "groupedData", [746] [747] [748] [749] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3084--3084 []\T1/pcr/m/n/9 plot(bill_dep ~ bill_len, data = penguins, pch = sym[sex], col = pal[species])[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 3092--3092 []\T1/pcr/m/n/9 m <- glm(sex ~ bill_len + bill_dep + body_mass, data = adelie, family = binomial)[] [750] [751] [752] [753] [754] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3420--3420 []\T1/pcr/m/n/9 pairs(quakes, main = "Fiji Earthquakes, N = 1000", cex.main = 1.2, pch = ".")[] [755] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3467--3467 []\T1/pcr/m/n/9 myrandu <- matrix(NA_real_, 400, 3, dimnames = list(NULL, c("x ","y","z")))[] [756] [757] [758] [759] [760] Overfull \hbox (47.58038pt too wide) in paragraph at lines 3773--3773 []\T1/pcr/m/n/9 ## Alaska and Hawaii are placed just off the West Coast (for c ompact map drawing):[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 3775--3775 []\T1/pcr/m/n/9 ## state.center2 := version of state.center with "correct" coo rdinates for AK & HI:[] Overfull \hbox (85.38034pt too wide) in paragraph at lines 3776--3776 []\T1/pcr/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis t.html#Geographic%20Centers[] Underfull \hbox (badness 1259) in paragraph at lines 3833--3836 \T1/ptm/m/n/10 Av. Cir-cu-laire, 3, B-1180 BRUS-SELS Cur-rently at [][]$\T1/pcr /m/n/10 https : / / www . sidc . be / SILSO / [761] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3883--3883 []\T1/pcr/m/n/9 ## How to recreate the "old" sunspot.month (R <= 3.0.3) =: sun spot.month.0[] [762] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3936--3936 []\T1/pcr/m/n/9 (t2 <- c(min( end(sm)[1],end(sy)[1]), 12)) # Dec 1983 (will n ot be updated!)[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3940--3940 [] \T1/pcr/m/n/9 ## The yearly series *is* close to the averages of t he monthly one:[] [763] [764] [765] Underfull \hbox (badness 4779) in paragraph at lines 4088--4091 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr oupedData", "groupedData", [766] [767] [768] Overfull \hbox (9.78043pt too wide) in paragraph at lines 4297--4297 [] \T1/pcr/m/n/9 xlab = "ToothGrowth data: length vs dose, given type of supplement")[] Underfull \hbox (badness 10000) in paragraph at lines 4333--4335 []\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/pcr/m/n/10 h ttps : / / web . archive . org / web / Underfull \hbox (badness 10000) in paragraph at lines 4333--4335 \T1/pcr/m/n/10 20110523225828 / http : / / www . ltrr . arizona . edu / ~hallma n / sitephotos / [769] [770] [771] [772] [773] [774] [775] [776] [777] [778] [779] [780] [781] [782]) (./grDevices-pkg.tex Chapter 4. [783] [784] [785] [786] Underfull \hbox (badness 4752) in paragraph at lines 299--304 []\T1/ptm/m/n/10 Apart from that, []\T1/pcr/m/n/10 axisTicks() []\T1/ptm/m/n/10 just calls the C func-tion []\T1/pcr/m/n/10 CreateAtVector() []\T1/ptm/m/n/10 in Underfull \hbox (badness 2865) in paragraph at lines 299--304 \T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R\T1/pcr/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack -age func-tion [787] Overfull \hbox (9.78043pt too wide) in paragraph at lines 351--351 []\T1/pcr/m/n/9 aX(2, print(ya <- axisTicks(pu[3:4], log = TRUE))) # 10 20 50 100 (y axis)[] [788] [789] [790] Overfull \hbox (6.78088pt too wide) in paragraph at lines 537--537 []\T1/pcr/m/n/10 cairo_pdf(filename = if(onefile) "Rplots.pdf" else "Rplot%03d .pdf",[] [791] [792] [793] [794] [795] [796] Underfull \hbox (badness 2245) in paragraph at lines 919--924 []\T1/ptm/m/n/10 Hexadecimal string col-ors can be in the long hex-adec-i-mal f orm (e.g., []\T1/pcr/m/n/10 "#rrggbb" []\T1/ptm/m/n/10 or [797] Overfull \hbox (31.3804pt too wide) in paragraph at lines 983--983 []\T1/pcr/m/n/9 names(clmult) <- sapply(clmult, function(x) paste(crgb[,x[1]], collapse = ","))[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 990--990 [] \T1/pcr/m/n/9 lattice::cloud(blue ~ red + green, data = as.data.frame(tc ), col = cNms)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 993--993 []\T1/pcr/m/n/9 cNms[isC] # "white" "black" "blue" "cyan" "green" "magenta" "r ed" "yellow"[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 1000--1000 [] \T1/pcr/m/n/9 plot3d (tc, col = cNms, size = 11) # --> rotate w/ mouse; e nlarged corners:[] Underfull \vbox (badness 10000) has occurred while \output is active [798] [799] [800] [801] Underfull \hbox (badness 5175) in paragraph at lines 1239--1241 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [802] [803] [804] Overfull \hbox (25.98041pt too wide) in paragraph at lines 1410--1410 []\T1/pcr/m/n/9 zapsmall(lab <- convertColor(cols, from = "sRGB", to = "Lab", scale.in = 255))[] [805] [806] [807] Underfull \hbox (badness 3302) in paragraph at lines 1671--1675 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of Underfull \hbox (badness 10000) in paragraph at lines 1671--1675 []\T1/pcr/m/n/10 c("LinearGradient", "RadialGradient", "TilingPattern") [808] [809] [810] [811] [812] Underfull \hbox (badness 1565) in paragraph at lines 1962--1967 []\T1/ptm/m/n/10 The de-fault for []\T1/pcr/m/n/10 dev.print []\T1/ptm/m/n/10 i s to pro-duce and print a postscript copy. This will not Underfull \hbox (badness 1354) in paragraph at lines 1962--1967 \T1/ptm/m/n/10 sys-tem: see [][][]\T1/pcr/m/n/10 postscript[][][] []\T1/ptm/m/n /10 for how to set this up. Win-dows users may pre-fer to use [813] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2045--2045 []\T1/pcr/m/n/10 dev2bitmap(file, type = "png16m", height = 7, width = 7, res = 72,[] [814] Underfull \hbox (badness 1184) in paragraph at lines 2086--2096 []\T1/ptm/m/n/10 The types avail-able will de-pend on the ver-sion of []\T1/pcr /m/n/10 ghostscript[]\T1/ptm/m/n/10 , but are likely to in- Underfull \hbox (badness 2057) in paragraph at lines 2086--2096 []\T1/pcr/m/n/10 "tiffg4"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiffgray"[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 "tifflzw"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiffp ack"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiff12nc"[]\T1/ptm/m/n/10 , []\T1/pcr/ m/n/10 "tiff24nc"[]\T1/ptm/m/n/10 , [815] Underfull \hbox (badness 10000) in paragraph at lines 2198--2200 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [816] [817] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2335--2335 []\T1/pcr/m/n/10 embedGlyphs(file, glyphInfo, outfile = file, options = charac ter())[] [818] Underfull \hbox (badness 6758) in paragraph at lines 2386--2389 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are Underfull \hbox (badness 4927) in paragraph at lines 2390--2393 []\T1/pcr/m/n/10 embedGlyphs() []\T1/ptm/m/n/10 is rec-om-mended for []\T1/pcr/ m/n/10 pdf() []\T1/ptm/m/n/10 files that con-tain type-set glyphs (see [819] [820] Underfull \hbox (badness 2326) in paragraph at lines 2509--2519 []\T1/ptm/m/n/10 are given, then it uses those in a call to []\T1/pcr/m/n/10 se tGraphicsEventHandlers []\T1/ptm/m/n/10 to re-place Underfull \hbox (badness 2318) in paragraph at lines 2509--2519 \T1/ptm/m/n/10 any ex-ist-ing han-dlers in the cur-rent de-vice. This is for co m-pat-i-bil-ity with pre-2.12.0 Underfull \hbox (badness 2460) in paragraph at lines 2509--2519 \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions. The cur-rent nor-mal way to set up e vent han-dlers is to set them us-ing Underfull \hbox (badness 1221) in paragraph at lines 2509--2519 []\T1/pcr/m/n/10 setGraphicsEventHandlers []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 setGraphicsEventEnv []\T1/ptm/m/n/10 on one or more graph-ics [821] Overfull \hbox (20.58041pt too wide) in paragraph at lines 2612--2612 []\T1/pcr/m/n/9 dragplot <- function(..., xlim = NULL, ylim = NULL, xaxs = "r" , yaxs = "r") {[] [822] [823] [824] [825] Overfull \hbox (30.78088pt too wide) in paragraph at lines 2869--2869 []\T1/pcr/m/n/10 gray.colors(n, start = 0.3, end = 0.9, gamma = 2.2, alpha, re v = FALSE) Overfull \hbox (30.78088pt too wide) in paragraph at lines 2870--2870 []\T1/pcr/m/n/10 grey.colors(n, start = 0.3, end = 0.9, gamma = 2.2, alpha, re v = FALSE)[] [826] [827] [828] [829] Underfull \hbox (badness 10000) in paragraph at lines 3143--3144 [830] [831] [832] [833] [834] Overfull \hbox (24.78088pt too wide) in paragraph at lines 3472--3472 []\T1/pcr/m/n/10 colorConverter(toXYZ, fromXYZ, name, white = NULL, vectorized = FALSE)[] [835] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3556--3556 []\T1/pcr/m/n/9 zapsmall(luv <- convertColor(cols, from = "sRGB", to = "Luv", scale.in = 255))[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3557--3557 []\T1/pcr/m/n/9 (hex <- convertColor(luv, from = "Luv", to = hexcolor, scale. out = NULL))[] [836] [837] [838] Underfull \hbox (badness 10000) in paragraph at lines 3716--3722 []\T1/pcr/m/n/10 nclass.FD []\T1/ptm/m/n/10 uses the Freedman-Diaconis choice b ased on the inter-quartile range [839] Overfull \hbox (30.78088pt too wide) in paragraph at lines 3791--3791 []\T1/pcr/m/n/10 palette.colors(n = NULL, palette = "Okabe-Ito", alpha, recycl e = FALSE,[] [840] Overfull \hbox (9.78043pt too wide) in paragraph at lines 3883--3883 []\T1/pcr/m/n/9 (palette(gray(seq(0,.9,length.out = 25)))) # gray scales; prin t old palette[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 3903--3903 []\T1/pcr/m/n/9 ## Demonstrate the colors 1:8 in different palettes using a cu stom matplot()[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3910--3910 [] \T1/pcr/m/n/9 matplot(x, type = "l", lwd = 4, lty = 1, col = 1:n, ylab = "", main=main)[] [841] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3917--3917 []\T1/pcr/m/n/9 palROB <- colorRampPalette(c("red", "darkorange2", "blue"), sp ace = "Lab")[] Overfull \hbox (54.78088pt too wide) in paragraph at lines 3968--3968 []\T1/pcr/m/n/10 hcl.colors(n, palette = "viridis", alpha = NULL, rev = FALSE, fixup = TRUE) [842] Underfull \hbox (badness 8170) in paragraph at lines 3997--4000 []\T1/ptm/m/n/10 the type of palettes to list: []\T1/pcr/m/n/10 "qualitative"[] \T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sequential"[]\T1/ptm/m/n/10 , [843] Underfull \hbox (badness 2189) in paragraph at lines 4058--4063 []\T1/ptm/m/n/10 For ex-am-ple, []\T1/pcr/m/n/10 "Dark 3" []\T1/ptm/m/n/10 work s well for shad-ing points or lines in up to five groups, Underfull \hbox (badness 10000) in paragraph at lines 4096--4100 \T1/pcr/m/n/10 wikipedia . org / w / index . php ? title = HCL _ color _ space & oldid = 883465135$[][]\T1/ptm/m/n/10 . [844] Underfull \vbox (badness 10000) has occurred while \output is active [845] [846] Underfull \hbox (badness 1112) in paragraph at lines 4263--4267 []\T1/ptm/m/n/10 as `\T1/pcr/m/n/10 "CP1250.enc"\T1/ptm/m/n/10 ' (Cen-tral Eu-r o-pean), []\T1/pcr/m/n/10 "CP1251.enc" [847] [848] Underfull \hbox (badness 1577) in paragraph at lines 4429--4436 \T1/ptm/m/n/10 PostScript fonts fam-i-lies of those names which are in-cluded ( or cloned) in all com-mon [849] Underfull \hbox (badness 1688) in paragraph at lines 4490--4509 \T1/ptm/m/n/10 cod-ings (ex-cept []\T1/pcr/m/n/10 "TeXtext"[]\T1/ptm/m/n/10 ) a gree over that range. Some en-cod-ings are su-per-sets of Underfull \hbox (badness 2012) in paragraph at lines 4490--4509 \T1/ptm/m/n/10 ISO-Latin1. How-ever, if ac-cented and spe-cial char-ac-ters do not come out as you ex- [850] [851] Underfull \hbox (badness 5939) in paragraph at lines 4716--4723 []\T1/ptm/m/n/10 arguments []\T1/pcr/m/n/10 width[]\T1/ptm/m/n/10 , []\T1/pcr/m /n/10 height[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1 /pcr/m/n/10 family[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 title[]\T1/ptm/m/n/10 , [ ]\T1/pcr/m/n/10 fonts[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1448) in paragraph at lines 4716--4723 []\T1/pcr/m/n/10 version[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 paper[]\T1/ptm/m/n/ 10 , []\T1/pcr/m/n/10 encoding[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 bg[]\T1/ptm/m /n/10 , []\T1/pcr/m/n/10 fg[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pointsize[]\T1/p tm/m/n/10 , []\T1/pcr/m/n/10 pagecentre[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4716--4723 []\T1/pcr/m/n/10 colormodel[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 useDingbats[]\T1 /ptm/m/n/10 , []\T1/pcr/m/n/10 useKerning[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 fi llOddEven[]\T1/ptm/m/n/10 , [852] [853] [854]pdfTeX warning (ext4): destination with the same identifier (n ame{Rfn.symbol}) has been already used, duplicate ignored \relax l.4896 \aliasA{symbol}{plotmath}{symbol} [855] [856] Underfull \vbox (badness 10000) has occurred while \output is active [857] [858] [859] [860] [861] [862] Underfull \hbox (badness 1348) in paragraph at lines 5462--5465 []\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, [][]$\T1/pcr/m/n/10 https : / / ww w . iso . org / standard / 34342 . html$[][]\T1/ptm/m/n/10 . See also [863] Overfull \hbox (31.3804pt too wide) in paragraph at lines 5488--5488 []\T1/pcr/m/n/9 ## Not run: dev.print(png, filename = "myplot.png", width = 10 24, height = 768)[] Underfull \hbox (badness 4582) in paragraph at lines 5529--5535 []\T1/ptm/m/n/10 For use with []\T1/pcr/m/n/10 onefile = FALSE[]\T1/ptm/m/n/10 , give a C in-te-ger for-mat such as [864] [865] [866] Underfull \hbox (badness 7344) in paragraph at lines 5768--5770 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso Underfull \hbox (badness 7397) in paragraph at lines 5779--5783 [][][]\T1/pcr/m/n/10 postscriptFonts[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/ 10 Devices[][][][]\T1/ptm/m/n/10 , and [][][]\T1/pcr/m/n/10 check.options[][][] []\T1/ptm/m/n/10 which is called from both [867] [868] Underfull \hbox (badness 1552) in paragraph at lines 5907--5916 []\T1/pcr/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Bookman"[]\T1 /ptm/m/n/10 , []\T1/pcr/m/n/10 "Courier"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "He lvetica"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Helvetica-Narrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5907--5916 []\T1/pcr/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Pal atino" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/pc r/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5907--5916 []\T1/pcr/m/n/10 "URWBookman"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "NimbusMon"[]\ T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "NimbusSan" []\T1/ptm/m/n/10 (syn-onym []\T1/p cr/m/n/10 "URWHelvetica"[]\T1/ptm/m/n/10 ), Underfull \hbox (badness 2221) in paragraph at lines 5917--5919 []\T1/ptm/m/n/10 There are also map-pings for []\T1/pcr/m/n/10 "ComputerModern" []\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ComputerModernItalic" []\T1/ptm/m/n/10 and [869] Underfull \hbox (badness 4686) in paragraph at lines 5948--5954 []\T1/pcr/m/n/10 "Japan1"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Japan1HeiMin"[]\T 1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Japan1GothicBBB"[]\T1/ptm/m/n/10 , and []\T1/p cr/m/n/10 "Japan1Ryumin" []\T1/ptm/m/n/10 for [870] Underfull \hbox (badness 5388) in paragraph at lines 5973--5978 []\T1/pcr/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/p cr/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu / [871] [872] [873] Overfull \hbox (6.78088pt too wide) in paragraph at lines 6185--6185 []\T1/pcr/m/n/10 quartz.save(file, type = "png", device = dev.cur(), dpi = 100 , ...)[] [874] Underfull \hbox (badness 10000) in paragraph at lines 6272--6274 []\T1/ptm/m/n/10 Calling []\T1/pcr/m/n/10 quartz() []\T1/ptm/m/n/10 sets [][][] \T1/pcr/m/n/10 .Device[][][] []\T1/ptm/m/n/10 to []\T1/pcr/m/n/10 "quartz" []\T 1/ptm/m/n/10 for on-screen de-vices and to [875] [876] Overfull \hbox (20.58041pt too wide) in paragraph at lines 6397--6397 [] \T1/pcr/m/n/9 quartzFonts("mono") # the list(mono = ..) sublist o f quartzFonts()[] [877] [878] [879] Underfull \hbox (badness 1803) in paragraph at lines 6558--6561 \T1/ptm/m/n/10 play List", [][]$\T1/pcr/m/n/10 https : / / stattech . wordpress . fos . auckland . ac . nz / 2015 / 12 / 21 / [880] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6648--6648 []\T1/pcr/m/n/9 rgb((0:15)/15, green = 0, blue = 0, names = paste("red", 0:15, sep = "."))[] Underfull \hbox (badness 10000) in paragraph at lines 6662--6665 []\T1/pcr/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r ed/green/blue) into HSV space [881] [882] [883] [884] Overfull \hbox (25.98041pt too wide) in paragraph at lines 6882--6882 []\T1/pcr/m/n/9 p <- persp(x, y, fxy <- outer(x,y), phi = 20, theta = 15, r = 3, ltheta = -75,[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 6893--6893 []\T1/pcr/m/n/9 ## now some "horizontal rays" (going from center to very left or very right):[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 6895--6895 [] \T1/pcr/m/n/9 lines(trans3d(x=seq(x1, x2, by=0.5), y= -0.7, z = z, pmat = p, continuous = CNT),[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 6897--6897 []\T1/pcr/m/n/9 doHor(-10, 0, z = -0.5, col = 2) # x in [-10, 0] -- to the v ery left : fine[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 6898--6898 []\T1/pcr/m/n/9 doHor(-.5, 2, z = -0.52,col = 4) # x in [-0.5, 2] only {to th e right} --> all fine[] Overfull \hbox (117.7803pt too wide) in paragraph at lines 6899--6899 []\T1/pcr/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro blem (without \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 continuous=TRUE\TS1/pcr/m/n/9 '\T1/ pcr/m/n/9 ):[] [885] [886] Overfull \hbox (0.78088pt too wide) in paragraph at lines 7031--7031 []\T1/pcr/m/n/10 windows(width, height, pointsize, record, rescale, xpinch, yp inch, Overfull \hbox (0.78088pt too wide) in paragraph at lines 7038--7038 []\T1/pcr/m/n/10 win.metafile(filename = "", width = 7, height = 7, pointsize = 12,[] [887] [888] [889] [890] Underfull \hbox (badness 10000) in paragraph at lines 7305--7310 []\T1/ptm/m/n/10 arguments []\T1/pcr/m/n/10 width[]\T1/ptm/m/n/10 , []\T1/pcr/m /n/10 height[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pointsize[]\T1/ptm/m/n/10 , []\ T1/pcr/m/n/10 record[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 rescale[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1803) in paragraph at lines 7305--7310 []\T1/pcr/m/n/10 xpinch[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 ypinch[]\T1/ptm/m/n/ 10 , []\T1/pcr/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 canvas[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 gamma[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 xpos[]\T1/ptm/m /n/10 , []\T1/pcr/m/n/10 ypos[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 buffered[]\T1/ ptm/m/n/10 , Underfull \hbox (badness 2941) in paragraph at lines 7305--7310 []\T1/pcr/m/n/10 restoreConsole[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 clickToConfi rm[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 title[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 fillOddEven []\T1/ptm/m/n/10 and [891] [892] Overfull \hbox (36.7804pt too wide) in paragraph at lines 7413--7413 []\T1/pcr/m/n/9 windows() # make sure we have the right device type (availabl e on Windows only)[] Underfull \hbox (badness 3590) in paragraph at lines 7452--7455 []\T1/ptm/m/n/10 The \T1/phv/m/n/10 R \T1/ptm/m/n/10 func-tion is a wrap-per fo r two de-vices, one based on Xlib ([][]$\T1/pcr/m/n/10 https : / / Underfull \hbox (badness 2393) in paragraph at lines 7452--7455 \T1/pcr/m/n/10 en . wikipedia . org / wiki / Xlib$[][]\T1/ptm/m/n/10 ) and one us-ing cairo-graph-ics ([][]$\T1/pcr/m/n/10 https : / / www . Overfull \hbox (12.78088pt too wide) in paragraph at lines 7463--7463 [] \T1/pcr/m/n/10 fonts, family, xpos, ypos, title, type, antialias, symbol family)[] [893] Underfull \hbox (badness 1189) in paragraph at lines 7528--7530 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [894] Underfull \hbox (badness 10000) in paragraph at lines 7633--7635 []\T1/pcr/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ K lan-guages and [895] Underfull \hbox (badness 10000) in paragraph at lines 7678--7685 []\T1/ptm/m/n/10 Problems with in-cor-rect ren-der-ing of sym-bols (e.g., of [] \T1/pcr/m/n/10 quote(pi) []\T1/ptm/m/n/10 and Underfull \hbox (badness 2469) in paragraph at lines 7678--7685 []\T1/pcr/m/n/10 expression(10^degree)[]\T1/ptm/m/n/10 ) have been seen on Linu x sys-tems which have the Wine [896] Underfull \hbox (badness 5607) in paragraph at lines 7760--7764 []\T1/pcr/m/n/10 type = "Xlib" []\T1/ptm/m/n/10 sup-ports `True-Color', `Pseu-d o-Color', `GrayScale', []\T1/pcr/m/n/10 StaticGray []\T1/ptm/m/n/10 and [897] Overfull \hbox (20.58041pt too wide) in paragraph at lines 7812--7812 [] \T1/pcr/m/n/9 function(...) grDevices::X11.options(width = 8, height = 6, xpos = 0,[] [898] [899] Overfull \hbox (63.78036pt too wide) in paragraph at lines 7985--7985 []\T1/pcr/m/n/9 op <- options(warn = 2)# ==> warnings would be errors, we supp ress the one "we know":[] [900] Underfull \hbox (badness 1231) in paragraph at lines 8024--8026 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., []\T1/pcr/m/n/10 number[i] []\T1/ptm/m/n/10 is the mul-ti-plic-ity of Overfull \hbox (9.78043pt too wide) in paragraph at lines 8051--8051 []\T1/pcr/m/n/9 xy <- data.frame(x = round(sort(stats::rnorm(100))), y = stats ::rnorm(100))[] [901] [902] [903]) (./graphics-pkg.tex [904] Chapter 5. Underfull \hbox (badness 4647) in paragraph at lines 17--19 []\T1/ptm/m/n/10 For a com-plete list of func-tions with in-di-vid-ual help pag es, use []\T1/pcr/m/n/10 library(help = [905] [906] [907] [908] [909] [910] [911] Overfull \hbox (6.05087pt too wide) in paragraph at lines 451--451 [] \T1/pcr/m/n/10 gap.axis <- if(perpendicular(side, las)) 0.25 else 1[] Underfull \hbox (badness 4048) in paragraph at lines 483--489 []\T1/ptm/m/n/10 When []\T1/pcr/m/n/10 at = NULL[]\T1/ptm/m/n/10 , pretty tick mark lo-ca-tions are com-puted in-ter-nally (the same way [912] [913] Overfull \hbox (47.58038pt too wide) in paragraph at lines 581--581 []\T1/pcr/m/n/9 ## now shrink the window (in x- and y-direction) and observe t he axis labels drawn[] [914] Overfull \hbox (15.18042pt too wide) in paragraph at lines 698--698 []\T1/pcr/m/n/9 axis.Date(3, at = as.integer(as.Date("2023-04-01")), col.axis = "darkgreen")[] [915] Overfull \hbox (15.18042pt too wide) in paragraph at lines 713--713 []\T1/pcr/m/n/9 axis.POSIXct(3, at = as.POSIXct("2022-10-01 00:01:30"), col.ax is = "orange")[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 718--718 []\T1/pcr/m/n/9 axis.POSIXct(3, at = as.numeric(as.POSIXct("2022-10-01 00:00:3 0")) + 0.25,[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 719--719 [] \T1/pcr/m/n/9 col.axis = "forestgreen", col = "darkgreen", m gp = c(3,2,0))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 725--725 []\T1/pcr/m/n/9 plot(data.frame(HST, y = 1), xaxt = "n", xlab = "Hawaii Standa rd Time (HST)")[] Underfull \hbox (badness 10000) in paragraph at lines 752--756 []\T1/ptm/m/n/10 numeric vec-tor of length three, de-fault-ing to [][][]\T1/pcr /m/n/10 par[][][]("xaxp") []\T1/ptm/m/n/10 or Underfull \hbox (badness 3250) in paragraph at lines 752--756 [][][]\T1/pcr/m/n/10 par[][][]("yaxp") []\T1/ptm/m/n/10 de-pend-ing on the []\T 1/pcr/m/n/10 side []\T1/ptm/m/n/10 ar-gu-ment ([]\T1/pcr/m/n/10 par("xaxp") []\ T1/ptm/m/n/10 if [916] [917] Overfull \hbox (4.38043pt too wide) in paragraph at lines 839--839 [] \T1/pcr/m/n/9 axp = c(get_axp(usr.i), n = 3), log = TRUE, n intLog = 5))[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 876--876 [] \T1/pcr/m/n/10 add = FALSE, ann = !add && par("ann"), args.legend = NULL, ...)[] [918] [919] Underfull \hbox (badness 10000) in paragraph at lines 1021--1025 [][][]\T1/pcr/m/n/10 plot[][][](..., type = "h")[]\T1/ptm/m/n/10 , [][][]\T1/pc r/m/n/10 dotchart[][][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 hist[][][] []\T1 /ptm/m/n/10 for bars of a \T1/ptm/m/it/10 con-tin-u-ous \T1/ptm/m/n/10 vari-abl e. [920] Overfull \hbox (133.98029pt too wide) in paragraph at lines 1038--1038 [] \T1/pcr/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 1040--1040 []\T1/pcr/m/n/9 (xt <- xtabs(Freq ~ Survived + Class + Sex, d.Titanic, subset = Age=="Adult"))[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 1042--1042 []\T1/pcr/m/n/9 mosaicplot(xt[,,"Male"], main = "mosaicplot(Freq ~ Class + Sur vived, *)", color=TRUE)[] [921] [922] [923] [924] Overfull \hbox (31.3804pt too wide) in paragraph at lines 1325--1325 []\T1/pcr/m/n/9 # *add* notches (somewhat funny here <--> warning "notches .. outside hinges"):[] [925] [926] [927] Underfull \hbox (badness 2503) in paragraph at lines 1487--1496 \T1/ptm/m/n/10 when []\T1/pcr/m/n/10 horizontal []\T1/ptm/m/n/10 is false, and []\T1/pcr/m/n/10 xlim []\T1/ptm/m/n/10 hor-i-zon-tally. []\T1/pcr/m/n/10 xaxt[] \T1/ptm/m/n/10 , []\T1/pcr/m/n/10 yaxt[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3375) in paragraph at lines 1522--1524 []\T1/ptm/m/n/10 whisker line type (de-fault: []\T1/pcr/m/n/10 "dashed"[]\T1/pt m/m/n/10 ), [928] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1594--1594 []\T1/pcr/m/n/9 boxplot(z, col.axis = "skyblue3", main = "boxplot(*, col.axi s=..,main=..)")[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1595--1595 []\T1/pcr/m/n/9 plot(z[[1]], col.axis = "skyblue3", main = "plot(*, col.axi s=..,main=..)")[] [929] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1601--1601 []\T1/pcr/m/n/9 splus <- list(boxwex = 0.4, staplewex = 1, outwex = 1, boxfill = "grey40",[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 1602--1602 [] \T1/pcr/m/n/9 medlwd = 3, medcol = "white", whisklty = 3, outl ty = 1, outpch = NA)[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 1635--1635 [] \T1/pcr/m/n/10 yaxlabels = NULL, xlim = NULL, ylim = c(0, 1), weights = NU LL, ...)[] [930] [931] [932] [933] [934] Underfull \hbox (badness 10000) in paragraph at lines 1908--1914 [][][]\T1/pcr/m/n/10 contourLines[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 filled.contour[][][] []\T1/ptm/m/n/10 for color-filled con-tours, [][][]\T1/pcr /m/n/10 contourplot[][][] []\T1/ptm/m/n/10 (and Overfull \hbox (9.78043pt too wide) in paragraph at lines 1928--1928 []\T1/pcr/m/n/9 contour(x, x, z, ylim = c(-6, 6), nlevels = 20, lty = 2, metho d = "simple",[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 1940--1940 []\T1/pcr/m/n/9 contour(z, levels=levs[-c(1,length(levs))], col = 1:5, lwd = 1 :3 *1.5, lty = 1:3)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1956--1956 []\T1/pcr/m/n/9 plot(x = 0, y = 0, type = "n", xlim = rx, ylim = ry, xlab = "" , ylab = "")[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1965--1965 []\T1/pcr/m/n/9 plot(x = 0, y = 0, type = "n", xlim = rx, ylim = ry, xlab = "" , ylab = "")[] [935] [936] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2050--2050 []\T1/pcr/m/n/10 coplot(formula, data, given.values, panel = points, rows, col umns, [937] [938] Overfull \hbox (31.3804pt too wide) in paragraph at lines 2179--2179 []\T1/pcr/m/n/9 coplot(lat ~ long | depth, data = quakes, given.values = given .depth, rows = 1)[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2184--2184 []\T1/pcr/m/n/9 coplot(ll.dm, data = quakes, number = c(4, 7), show.given = c( TRUE, FALSE))[] [939] [940] Overfull \hbox (18.78088pt too wide) in paragraph at lines 2358--2358 []\T1/pcr/m/n/10 dotchart(x, labels = NULL, groups = NULL, gdata = NULL, offse t = 1/8, Overfull \hbox (54.78088pt too wide) in paragraph at lines 2359--2359 [] \T1/pcr/m/n/10 ann = par("ann"), xaxt = par("xaxt"), frame.plot = T RUE, log = "",[] [941] Underfull \hbox (badness 1430) in paragraph at lines 2389--2391 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/pcr/m/n/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [942] Overfull \hbox (78.78088pt too wide) in paragraph at lines 2470--2470 [] \T1/pcr/m/n/10 color.palette = function(n) hcl.colors(n, "YlO rRd", rev = TRUE),[] Overfull \hbox (66.78088pt too wide) in paragraph at lines 2472--2472 [] \T1/pcr/m/n/10 plot.title, plot.axes, key.title, key.axes, ke y.border = NULL,[] Underfull \hbox (badness 1009) in paragraph at lines 2482--2489 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [943] Underfull \hbox (badness 7273) in paragraph at lines 2565--2569 [][][]\T1/pcr/m/n/10 contour[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 image [][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 hcl.colors[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gray.colors[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 palette[][][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 contourplot[][][] []\T1/p tm/m/n/10 and [944] [945] [946] [947] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2822--2822 []\T1/pcr/m/n/9 ## maybe change the desired number of tick marks: par(lab = c (mx, my, 7))[] [948] Overfull \hbox (42.18039pt too wide) in paragraph at lines 2843--2843 []\T1/pcr/m/n/9 plot(8:270, log="xy") ; grid() # at (1, 10, 100); if preferrin g "all" grid lines:[] [949] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2882--2882 [] \T1/pcr/m/n/10 density = NULL, angle = 45, col = "lightgray", border = NULL,[] [950] Underfull \hbox (badness 1226) in paragraph at lines 3008--3012 \T1/pcr/m/n/10 1)[]\T1/ptm/m/n/10 , they are the rel-a-tive fre-quen-cies []\T1 /pcr/m/n/10 counts/n []\T1/ptm/m/n/10 and in gen-eral sat-isfy [951] Overfull \hbox (15.18042pt too wide) in paragraph at lines 3061--3061 []\T1/pcr/m/n/9 ## Extreme outliers; the "FD" rule would take very large numbe r of \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 breaks\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 :[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3065--3065 []\T1/pcr/m/n/9 length(hh$breaks) ## typically 1 million -- though 1e6 was "a suggestion only"[] [952] Underfull \hbox (badness 10000) in paragraph at lines 3127--3130 [][][]\T1/ptm/m/n/10 graphical pa-ram-e-ters[][][], or ar-gu-ments to [][][]\T1 /pcr/m/n/10 hist.default[][][] []\T1/ptm/m/n/10 such as [953] Overfull \hbox (15.18042pt too wide) in paragraph at lines 3178--3178 []\T1/pcr/m/n/9 ## The default fuzz in hist.default() "kills" this, with a "w rong" message:[] [954] [955] Overfull \hbox (36.7804pt too wide) in paragraph at lines 3342--3342 []\T1/pcr/m/n/9 identifyPch <- function(x, y = NULL, n = length(x), plot = FAL SE, pch = 19, ...)[] Overfull \hbox (79.98035pt too wide) in paragraph at lines 3347--3347 [] \T1/pcr/m/n/9 ans <- identify(x[!sel], y[!sel], labels = which(!sel) , n = 1, plot = plot, ...)[] [956] [957] Underfull \hbox (badness 10000) in paragraph at lines 3489--3494 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 useRaster []\T1/ptm/m/n/10 is not spec-i-f ied, raster im-ages are used when the Underfull \hbox (badness 10000) in paragraph at lines 3489--3494 [][][]\T1/pcr/m/n/10 getOption[][][]("preferRaster") []\T1/ptm/m/n/10 is true, the grid is reg-u-lar and ei-ther Underfull \hbox (badness 10000) in paragraph at lines 3489--3494 [][][]\T1/pcr/m/n/10 dev.capabilities[][][]("rasterImage")$rasterImage []\T1/pt m/m/n/10 is []\T1/pcr/m/n/10 "yes" []\T1/ptm/m/n/10 or it is [958] Overfull \hbox (31.3804pt too wide) in paragraph at lines 3524--3524 []\T1/pcr/m/n/9 # Visualize as matrix. Need to transpose matrix and then flip it horizontally:[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 3526--3526 []\T1/pcr/m/n/9 imageM <- function(m, grid = max(dim(m)) <= 25, asp = (nrow(m) -1)/(ncol(m)-1), ...) {[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 3529--3529 [] \T1/pcr/m/n/9 axis(side, at=at, labels=as.character(j+1L), col="gray ", col.axis=1, ...)[] [959] [960] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3686--3686 []\T1/pcr/m/n/9 barplot(yhist$counts, axes = FALSE, xlim = c(0, top), space = 0, horiz = TRUE)[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 3705--3705 [] \T1/pcr/m/n/10 box.lwd = par("lwd"), box.lty = par("lty"), box.col = par("fg"),[] [961] Overfull \hbox (12.78088pt too wide) in paragraph at lines 3709--3709 [] \T1/pcr/m/n/10 text.font = NULL, merge = do.lines && has.pch, trace = FALSE,[] [962] [963] Overfull \hbox (36.7804pt too wide) in paragraph at lines 3894--3894 [] \T1/pcr/m/n/9 text (1, y.leg[i] - 0.1, paste("cex=", formatC(cexv[i])), c ex = 0.8, adj = 0)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3895--3895 [] \T1/pcr/m/n/9 legend(3, y.leg[i], leg.txt, pch = "sSvV", col = c(1, 3), ce x = cexv[i])[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3899--3899 [] \T1/pcr/m/n/9 cex = 1+(-1:2)/8, trace = TRUE)# trace: show computed l engths & coords[] [964] Overfull \hbox (15.18042pt too wide) in paragraph at lines 3909--3909 [] \T1/pcr/m/n/9 title("legend(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 top\TS1/pcr/m/n/ 9 '\T1/pcr/m/n/9 , lty = c(2, -1, 1), pch = c(NA, 3, 4), merge = TRUE)",[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 3940--3940 [] \T1/pcr/m/n/9 "text(c(3,3),2:3,\"c(rect(...)\")"), adj = c(0, 0.3))[] Underfull \vbox (badness 10000) has occurred while \output is active [965] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3966--3966 []\T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 Filled\TS1/pcr/m/n/9 ' \T1/pc r/m/n/9 boxes -- see also example(barplot) which may call legend(*, fill=)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3968--3968 []\T1/pcr/m/n/9 legend("topright", rownames(VADeaths), fill = gray.colors(nrow (VADeaths)))[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3979--3979 []\T1/pcr/m/n/9 legend("bottomright", paste("sin(", 1:7, "pi * x)"), col = 1:7 , lty = 1:7,[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3994--3994 []\T1/pcr/m/n/9 legend(.4,1, "sin(c x)", pch = 21, pt.bg = "white", lty = 1, c ol = "blue")[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 4002--4002 []\T1/pcr/m/n/9 legend("topleft", "(x,y)", pch=1, title= "topleft, inset = .05", inset = .05)[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 4004--4004 []\T1/pcr/m/n/9 legend("topright", "(x,y)", pch=1, title= "topright, inset = .02",inset = .02)[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 4012--4012 [] \T1/pcr/m/n/9 plot(1, type = "n", axes = FALSE, ann = FALSE); title(paste ("text.font =",i))[] Underfull \vbox (badness 10000) has occurred while \output is active [966] Overfull \hbox (15.18042pt too wide) in paragraph at lines 4022--4022 []\T1/pcr/m/n/9 legend("bottomleft", c("This legend", "has", "optimally sized" , "columns."),[] Underfull \hbox (badness 10000) in paragraph at lines 4084--4088 [][][]\T1/pcr/m/n/10 lines.formula[][][] []\T1/ptm/m/n/10 for the for-mula meth od; [][][]\T1/pcr/m/n/10 points[][][][]\T1/ptm/m/n/10 , par-tic-u-larly for []\ T1/pcr/m/n/10 type %in% [967] [968] Overfull \hbox (6.78088pt too wide) in paragraph at lines 4196--4196 [] \T1/pcr/m/n/10 log = "", ..., add = FALSE, verbose = getOption("verb ose"))[] [969] [970] Overfull \hbox (25.98041pt too wide) in paragraph at lines 4344--4344 []\T1/pcr/m/n/9 nd <- length(dv <- seq(as.Date("1959-02-21"), by = "weeks", le ngth.out = 100))[] Underfull \vbox (badness 10000) has occurred while \output is active [971] [972] Underfull \hbox (badness 3930) in paragraph at lines 4431--4433 []\T1/ptm/m/n/10 The mag-ni-fi-ca-tion to be used for axis an-no-ta-tion, as a mul-ti-ple of [973] [974] [975] [976] [977] Underfull \hbox (badness 1286) in paragraph at lines 4747--4750 []\T1/ptm/m/n/10 which draws the ti-tle. You may want to spec-ify []\T1/pcr/m/n /10 oma []\T1/ptm/m/n/10 when chang-ing Underfull \hbox (badness 3229) in paragraph at lines 4755--4760 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [978] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4851--4851 []\T1/pcr/m/n/9 pairs(USJudgeRatings, lower.panel = panel.smooth, upper.panel = panel.cor,[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4856--4856 [] \T1/pcr/m/n/9 main = "Lengths and Widths in [log]", line.main=1.5, oma =c(2,2,3,2))[] [979] [980] Underfull \hbox (badness 1264) in paragraph at lines 5117--5130 \T1/ptm/m/n/10 func-tions such as [][][]\T1/pcr/m/n/10 plot.default[][][][]\T1/ ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.window[][][][]\T1/ptm/m/n/10 , [][][]\T1 /pcr/m/n/10 points[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lines[][][][]\T 1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 abline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc r/m/n/10 axis[][][][]\T1/ptm/m/n/10 , [981] [982] [983] Underfull \hbox (badness 10000) in paragraph at lines 5383--5386 [984 ] Underfull \hbox (badness 10000) in paragraph at lines 5444--5446 Underfull \vbox (badness 10000) has occurred while \output is active [985] [986 ] [987] [988] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5694--5694 []\T1/pcr/m/n/9 c(prof.pilots = 16, lawyers = 11, farmers = 10, salesmen = 9, physicians = 9,[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5695--5695 [] \T1/pcr/m/n/9 mechanics = 6, policemen = 6, managers = 6, engineers = 5, t eachers = 4,[] [989] [990] [991] Overfull \hbox (25.98041pt too wide) in paragraph at lines 5912--5912 []\T1/pcr/m/n/9 points(trans3d(xy[,1], xy[,2], z = 6, pmat = res), co l = 2, pch = 16)[] [992] [993] [994] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6059--6059 []\T1/pcr/m/n/9 pie(c(Sky = 78, "Sunny side of pyramid" = 17, "Shady side of p yramid" = 5),[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 6060--6060 [] \T1/pcr/m/n/9 init.angle = 315, col = c("deepskyblue", "yellow", "yellow 3"), border = FALSE)[] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha s been already used, duplicate ignored \relax l.6119 \aliasA{plot}{plot.default}{plot} [995] [996] [997] [998] [999] [1000] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6462--6462 []\T1/pcr/m/n/9 plot(PlantGrowth$group, axes = FALSE, main = "no axes") # ext remely silly[] [1001] [1002] Overfull \hbox (66.78088pt too wide) in paragraph at lines 6586--6586 [] \T1/pcr/m/n/10 main = paste("Histogram of", paste(x$xname, co llapse = "\n")),[] [1003] [1004] [1005] [1006] Underfull \hbox (badness 10000) in paragraph at lines 6892--6894 []\T1/ptm/m/n/10 background (fill) color for the open plot sym-bols 21:25: see [1007] [1008] Underfull \hbox (badness 1028) in paragraph at lines 6985--6987 []\T1/ptm/m/n/10 character (or sym-bol) ex-pan-sion: a nu-mer-i-cal vec-tor. Th is works as a mul-ti-ple of Overfull \hbox (31.57222pt too wide) in paragraph at lines 7026--7027 [][] [1009 ] Overfull \hbox (20.58041pt too wide) in paragraph at lines 7120--7120 []\T1/pcr/m/n/9 plot(x, sin(x), type = "o", pch = 21, bg = par("bg"), col = "b lue", cex = .6,[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 7124--7124 []\T1/pcr/m/n/9 ## Illustration of pch = 0:25 (as in the figure shown above in PDF/HTML help)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 7125--7125 []\T1/pcr/m/n/9 ## Not run: png("pch.png", height = 0.7, width = 7, res = 100, units = "in")[] [1010] Overfull \hbox (31.3804pt too wide) in paragraph at lines 7149--7149 [] \T1/pcr/m/n/9 plot(rx, ry, type = "n", axes = FALSE, xlab = "", ylab = "", main = main)[] Underfull \vbox (badness 10000) has occurred while \output is active [1011] [1012] Underfull \hbox (badness 10000) in paragraph at lines 7271--7273 []\T1/ptm/m/n/10 The code im-ple-ment-ing poly-gon shad-ing was do-nated by Kev in Buhr Overfull \hbox (15.18042pt too wide) in paragraph at lines 7298--7298 [] \T1/pcr/m/n/9 polygon(x, y, xpd = xpd, col = "orange", lty = 2, lwd = 2, b order = "red")[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7304--7304 []\T1/pcr/m/n/9 yy <- c(c(0, cumsum(stats::rnorm(n))), rev(c(0, cumsum(stats:: rnorm(n)))))[] [1013] Underfull \hbox (badness 2600) in paragraph at lines 7361--7363 []\T1/ptm/m/n/10 character value spec-i-fy-ing the path fill mode: ei-ther []\T 1/pcr/m/n/10 "winding" []\T1/ptm/m/n/10 or [1014] [1015] [1016] [1017] Overfull \hbox (9.78043pt too wide) in paragraph at lines 7593--7593 []\T1/pcr/m/n/9 rect(100+i, 300+i, 150+i, 380+i, col = rainbow(11, start = 0.7 , end = 0.1))[] [1018] [1019] [1020] [1021] [1022] [1023] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7980--7980 []\T1/pcr/m/n/9 Lab.palette <- colorRampPalette(c("blue", "orange", "red"), sp ace = "Lab")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 7984--7984 []\T1/pcr/m/n/9 ## label the 20 very lowest-density points,the "outliers" (wit h obs.number):[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 7996--7996 []\T1/pcr/m/n/9 pairs(y, panel = function(...) smoothScatter(..., nrpoints = 0 , add = TRUE),[] [1024] Overfull \hbox (36.78088pt too wide) in paragraph at lines 8023--8023 [] \T1/pcr/m/n/10 xlim = NULL, ylim = c(0, 1), axes = TRUE, weights = NULL, ...)[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 8032--8032 [] \T1/pcr/m/n/10 subset = NULL, weights = NULL, drop.unused.levels = FALSE)[] [1025] [1026] [1027] [1028] [1029] Overfull \hbox (9.78043pt too wide) in paragraph at lines 8348--8348 []\T1/pcr/m/n/9 stars(USJudgeRatings, locations = c(0, 0), scale = FALSE, radi us = FALSE,[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 8351--8351 []\T1/pcr/m/n/9 stars(USJudgeRatings, locations = c(0, 0), scale = FALSE, radi us = FALSE,[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 8355--8355 [] \T1/pcr/m/n/9 draw.segments = TRUE, col.segments = 0, col.stars = 1:10 , key.loc = 0:1,[] [1030] [1031] [1032] Overfull \hbox (30.78088pt too wide) in paragraph at lines 8541--8541 []\T1/pcr/m/n/10 strwidth(s, units = "user", cex = NULL, font = NULL, vfont = NULL, ...) Overfull \hbox (36.78088pt too wide) in paragraph at lines 8542--8542 []\T1/pcr/m/n/10 strheight(s, units = "user", cex = NULL, font = NULL, vfont = NULL, ...)[] [1033] [1034] Overfull \hbox (0.78088pt too wide) in paragraph at lines 8646--8646 []\T1/pcr/m/n/10 sunflowerplot(formula, data = NULL, xlab = NULL, ylab = NULL, ...,[] [1035] Underfull \hbox (badness 1112) in paragraph at lines 8705--8709 []\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 number[i] == 1[]\T1/ptm/m/n/10 , a (sligh tly en-larged) usual plot-ting sym-bol ([]\T1/pcr/m/n/10 pch[]\T1/ptm/m/n/10 ) is drawn. For [1036] Overfull \hbox (20.58041pt too wide) in paragraph at lines 8767--8767 []\T1/pcr/m/n/9 sunflowerplot(iris[, 3:4], cex = .2, cex.fact = 1, size = .035 , seg.lwd = .8)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8782--8782 []\T1/pcr/m/n/9 sunflowerplot(rnorm(100), rnorm(100), number = rpois(n = 100, lambda = 2),[] [1037] [1038] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8918--8918 []\T1/pcr/m/n/9 text(x, y, apply(format(round(z3, digits = 2)), 1, paste, coll apse = ","),[] [1039] [1040] Overfull \hbox (4.38043pt too wide) in paragraph at lines 9112--9112 [] \T1/pcr/m/n/9 "Le français, c\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 est facile: Règles, Liberté, Egalité, Fraternité...")[] [1041] Underfull \hbox (badness 1215) in paragraph at lines 9140--9142 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/pcr/m /n/10 par(c("font.sub", Underfull \hbox (badness 1584) in paragraph at lines 9174--9180 []\T1/ptm/m/n/10 The po-si-tions of []\T1/pcr/m/n/10 xlab[]\T1/ptm/m/n/10 , []\ T1/pcr/m/n/10 ylab []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 sub []\T1/ptm/m/n/10 a re []\T1/pcr/m/n/10 line []\T1/ptm/m/n/10 (de-fault for []\T1/pcr/m/n/10 xlab [ ]\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 ylab []\T1/ptm/m/n/10 be-ing [1042]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni ts}) has been already used, duplicate ignored \relax l.9222 \HeaderA{units}{Graphical Units}{units} pdfTeX warning (ext4): destinatio n with the same identifier (name{Rfn.units.1}) has been already used, duplicate ignored \relax l.9222 \HeaderA{units}{Graphical Units}{units} [1043] Underfull \hbox (badness 1205) in paragraph at lines 9287--9289 []\T1/ptm/m/n/10 vectors con-tain-ing the co-or-di-nates of the ver-tices of th e poly-gon. See [1044] [1045] Overfull \hbox (25.98041pt too wide) in paragraph at lines 9406--9406 []\T1/pcr/m/n/9 arrows(res$x[nr-3], res$y[nr-3], res$x[nr], res$y[nr], code = 2, length = 0.1)[] [1046]) (./grid-pkg.tex Chapter 6. [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] Underfull \hbox (badness 4859) in paragraph at lines 635--638 []\T1/ptm/m/n/10 Modification of the view-port (should all be valid ar-gu-ments to the [1057] [1058] [1059] [1060] [1061] [1062] Overfull \hbox (31.3804pt too wide) in paragraph at lines 1029--1029 [] \T1/pcr/m/n/9 width=unit(1, "inches"), height=un it(1, "inches")))[] [1063] [1064] [1065] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1240--1240 [] \T1/pcr/m/n/9 vpList(vpStack(viewport(x=0.1, y=0.1, width=0.5 , height=0.5,[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1241--1241 [] \T1/pcr/m/n/9 just=c("left", "bottom" ), name="B"),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1242--1242 [] \T1/pcr/m/n/9 viewport(x=0.1, y=0.1, width=0.5 , height=0.5,[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1243--1243 [] \T1/pcr/m/n/9 just=c("left", "bottom" ), name="C"),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1244--1244 [] \T1/pcr/m/n/9 viewport(x=0.1, y=0.1, width=0.5 , height=0.5,[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1245--1245 [] \T1/pcr/m/n/9 just=c("left", "bottom" ), name="D")),[] [1066] [1067] [1068] [1069] Underfull \hbox (badness 3219) in paragraph at lines 1504--1507 []\T1/ptm/m/n/10 Both func-tions cre-ate a cir-cle grob (a graph-i-cal ob-ject de-scrib-ing a cir-cle), but only [1070] [1071] [1072] [1073] [1074] [1075] [1076] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1892--1892 [] \T1/pcr/m/n/9 do.call("grid.curve", c(list(x1=.25, y1=.25, x2=.75, y2=.75) , list(...)))[] [1077] [1078] [1079] Overfull \hbox (25.98041pt too wide) in paragraph at lines 2106--2106 []\T1/pcr/m/n/9 grid.rect(width=.4, height=.4, x=.25, y=.75, gp=gpar(fill="bla ck"), name="r1")[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2107--2107 []\T1/pcr/m/n/9 grid.rect(width=.4, height=.4, x=.5, y=.5, gp=gpar(fill="grey" ), name="r2")[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 2108--2108 []\T1/pcr/m/n/9 grid.rect(width=.4, height=.4, x=.75, y=.25, gp=gpar(fill="whi te"), name="r3")[] [1080] Underfull \hbox (badness 2961) in paragraph at lines 2143--2148 []\T1/ptm/m/n/10 The meth-ods for grob and gTree call the generic hook func-tio ns []\T1/pcr/m/n/10 preDrawDetails[]\T1/ptm/m/n/10 , [1081] Underfull \hbox (badness 4479) in paragraph at lines 2231--2234 []\T1/ptm/m/n/10 Both func-tions call []\T1/pcr/m/n/10 editDetails []\T1/ptm/m/ n/10 to al-low a grob to per-form cus-tom ac-tions and [1082] [1083] [1084] Underfull \hbox (badness 2894) in paragraph at lines 2438--2445 []\T1/ptm/m/n/10 Both func-tions cre-ate a frame grob (a graph-i-cal ob-ject de -scrib-ing a frame), but only [1085] [1086] [1087] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2594--2594 []\T1/pcr/m/n/10 getGrob(gTree, gPath, strict = FALSE, grep = FALSE, global = FALSE)[] [1088] Underfull \hbox (badness 1014) in paragraph at lines 2680--2685 []\T1/ptm/m/n/10 The jus-ti-fi-ca-tion of the glyphs rel-a-tive to the ([]\T1/p cr/m/n/10 x[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 ) lo-ca-tion. Can be [1089] Overfull \hbox (12.78088pt too wide) in paragraph at lines 2726--2726 []\T1/pcr/m/n/10 grid.grabExpr(expr, warn = 2, wrap = wrap.grobs, wrap.grobs = FALSE,[] [1090] [1091] Overfull \hbox (15.18042pt too wide) in paragraph at lines 2888--2888 [] \T1/pcr/m/n/9 children=gList(grob(name="child", vp ="vp1::vp2")),[] [1092] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2920--2920 [] \T1/pcr/m/n/10 default.units = "npc", gp=gpar(col = "grey"), vp = NULL)[] [1093] [1094] Underfull \hbox (badness 10000) in paragraph at lines 3103--3105 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1095] Underfull \hbox (badness 1077) in paragraph at lines 3120--3139 []\T1/ptm/m/n/10 Another pos-si-ble use of []\T1/pcr/m/n/10 grid.group() []\T1/ ptm/m/n/10 is to spec-ify both []\T1/pcr/m/n/10 src []\T1/ptm/m/n/10 and []\T1/ pcr/m/n/10 dst []\T1/ptm/m/n/10 and com-bine Underfull \hbox (badness 1622) in paragraph at lines 3120--3139 []\T1/ptm/m/n/10 is only drawn where it is NOT over-lapped by []\T1/pcr/m/n/10 src[]\T1/ptm/m/n/10 . The fol-low-ing (ex-tended) Porter- Underfull \hbox (badness 2057) in paragraph at lines 3120--3139 []\T1/pcr/m/n/10 "multiply"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "screen"[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 "overlay"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "darke n"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lighten"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n /10 "color.dodge"[]\T1/ptm/m/n/10 , [1096] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3192--3192 [] \T1/pcr/m/n/9 mask <- as.mask(rectGrob(gp=gpar(col=NA, fill="grey50")), ty pe="luminance")[] [1097] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3308--3308 [] \T1/pcr/m/n/9 pushViewport(viewport(layout=grid.layout(1, 1, widths=unit(1 , "inches"),[] [1098] [1099] [1100] [1101] [1102] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3623--3623 [] \T1/pcr/m/n/9 children=vpList(viewpor t(name="vp2"))))[] [1103] [1104] Overfull \hbox (52.98038pt too wide) in paragraph at lines 3719--3719 []\T1/pcr/m/n/9 pushViewport(viewport(x=0, y=0, width=0.25, height=0.25, just= c("left", "bottom")))[] Underfull \hbox (badness 2799) in paragraph at lines 3756--3762 []\T1/ptm/m/n/10 There are two hooks called []\T1/pcr/m/n/10 "before.grid.newpa ge" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "grid.newpage" []\T1/ptm/m/n/10 (see [1105] [1106] Overfull \hbox (6.78088pt too wide) in paragraph at lines 3848--3848 [] \T1/pcr/m/n/10 force.width = FALSE, force.height = FALSE, border = NULL,[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 3855--3855 [] \T1/pcr/m/n/10 force.width = FALSE, force.height = FALSE, border = NULL,[] [1107] [1108] [1109] Overfull \hbox (9.78043pt too wide) in paragraph at lines 4057--4057 [] \T1/pcr/m/n/9 "Nested rectangles, outer clockwise, inner ant i-clockwise")[] [1110] Overfull \hbox (25.98041pt too wide) in paragraph at lines 4072--4072 [] \T1/pcr/m/n/9 "Overlapping rectangles, one clockwise, other anti-clockwise")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 4093--4093 []\T1/pcr/m/n/9 # Not specifying pathId will treat all points as part of the s ame path, thus[] [1111] [1112] [1113] [1114] [1115] [1116] [1117] [1118] [1119] [1120] [1121] [1122] Underfull \hbox (badness 1067) in paragraph at lines 4843--4846 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1123] [1124] [1125] [1126] Overfull \hbox (31.3804pt too wide) in paragraph at lines 5059--5059 [] \T1/pcr/m/n/9 width=unit(1, "inches"), height=un it(1, "inches")))[] [1127] [1128] Underfull \hbox (badness 7256) in paragraph at lines 5194--5196 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1129] Overfull \hbox (69.18036pt too wide) in paragraph at lines 5261--5261 []\T1/pcr/m/n/9 grid.text(quote(frac(e^{-x^2/2}, sqrt(2*pi))), x=x, y=y, rot=s tats::runif(20, -45,45),[] [1130] [1131] [1132] [1133] [1134] [1135] Underfull \hbox (badness 2726) in paragraph at lines 5648--5652 []\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 gridCoords []\T1/ptm/m/n/10 a nu-meric ve c-tor. For []\T1/pcr/m/n/10 gridGrobCoords []\T1/ptm/m/n/10 a list Underfull \hbox (badness 1231) in paragraph at lines 5648--5652 \T1/ptm/m/n/10 of []\T1/pcr/m/n/10 "GridCoords" []\T1/ptm/m/n/10 ob-jects. For []\T1/pcr/m/n/10 gridGTreeCoords []\T1/ptm/m/n/10 a list of ei-ther [1136] Underfull \hbox (badness 2080) in paragraph at lines 5730--5735 []\T1/ptm/m/n/10 Either a []\T1/pcr/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 ob -ject (a list of lists with com-po-nents []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 an d []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 ) or a [1137] [1138] [1139] Underfull \hbox (badness 10000) in paragraph at lines 5910--5912 []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 grid.legend()[]\T1/ptm/m/n/10 : all the a r-gu-ments above are passed to [1140] [1141] [1142] [1143] [1144] [1145] [1146] [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7009--7009 []\T1/pcr/m/n/9 unitType(min(unit(1, "in"), unit(1, "npc") + unit(1, "mm")), r ecurse=TRUE)[] [1157] [1158] Overfull \hbox (54.78088pt too wide) in paragraph at lines 7129--7129 []\T1/pcr/m/n/10 viewportTransform(group, shear=groupShear(), flip=groupFlip() , device=TRUE) [1159] Underfull \hbox (badness 1867) in paragraph at lines 7231--7233 []\T1/ptm/m/n/10 This func-tion can be used to gen-er-ate a view-port path for use in []\T1/pcr/m/n/10 downViewport []\T1/ptm/m/n/10 or [1160] Underfull \hbox (badness 10000) in paragraph at lines 7268--7274 [][][]\T1/pcr/m/n/10 viewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 push Viewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 popViewport[][][][]\T1/pt m/m/n/10 , [][][]\T1/pcr/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/ pcr/m/n/10 seekViewport[][][][]\T1/ptm/m/n/10 , [1161] [1162] [1163] Underfull \vbox (badness 10000) has occurred while \output is active [1164] [1165] [1166] Overfull \hbox (25.98041pt too wide) in paragraph at lines 7604--7604 []\T1/pcr/m/n/9 invisible(lapply(trace, function(t) grid.lines(t$x, t$y, gp=gp ar(col="red"))))[] [1167]) (./methods-pkg.tex [1168] Chapter 7. [1169] [1170] Underfull \hbox (badness 1688) in paragraph at lines 166--171 []\T1/ptm/m/n/10 func-tion. See that doc-u-men-ta-tion also for de-tails of how co-erce meth-ods work. Use [1171] [1172] [1173] Underfull \hbox (badness 1348) in paragraph at lines 392--395 [][][]\T1/pcr/m/n/10 GroupGenericFunctions[][][] []\T1/ptm/m/n/10 for other in- for-ma-tion about group generic func-tions; [][]Meth- [1174] [1175] Overfull \hbox (15.18042pt too wide) in paragraph at lines 558--558 []\T1/pcr/m/n/9 ## vector. The next method will always be the default, usuall y a primitive.[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 568--568 []\T1/pcr/m/n/9 ## For arithmetic and one rnum with anything, callNextMethod w ith no arguments[] [1176] Overfull \hbox (4.38043pt too wide) in paragraph at lines 619--619 []\T1/pcr/m/n/9 ## Simple examples to illustrate callNextMethod with and witho ut arguments[] Underfull \vbox (badness 10000) has occurred while \output is active [1177] Overfull \hbox (25.98041pt too wide) in paragraph at lines 637--637 []\T1/pcr/m/n/9 ## call f() with 2 arguments: callNextMethod passes both to th e default method[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 640--640 []\T1/pcr/m/n/9 ## call f() with 1 argument: the default "B0" is not passed b y callNextMethod[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 657--657 []\T1/pcr/m/n/9 ## uses the class of the *argument* to consistently select the "B0" method[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 672--672 []\T1/pcr/m/n/9 ## Although the argument here is numeric, it\TS1/pcr/m/n/9 '\T 1/pcr/m/n/9 s still the "B0" method that\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s called[ ] Underfull \vbox (badness 10000) has occurred while \output is active [1178] [1179] [1180] [1181] [1182] [1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] [1191] [1192] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1792--1792 []\T1/pcr/m/n/9 stopifnot(identical(cc(1:10, 1+1i), sum(1:10, 1+1i))) # the "N umber" method[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1794--1794 []\T1/pcr/m/n/9 stopifnot(identical(cc(1:10, 1+1i, TRUE), c(1:10, 1+1i, TRUE)) ) # the default[] [1193] [1194] Underfull \hbox (badness 10000) in paragraph at lines 1979--1984 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/pcr/m/n/10 insertSource []\T1/ptm/m/n/ 10 can be an ob-ject of class [1195] [1196] [1197] Underfull \hbox (badness 1478) in paragraph at lines 2211--2216 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/pcr/m/n/10 where = [1198] [1199] Underfull \hbox (badness 10000) in paragraph at lines 2325--2329 []\T1/ptm/m/n/10 To see the ac-tual ta-ble (an [][][]\T1/pcr/m/n/10 environment [][][][]\T1/ptm/m/n/10 ) used for meth-ods dis-patch, call Overfull \hbox (78.78088pt too wide) in paragraph at lines 2359--2359 []\T1/pcr/m/n/10 getMethods(f, where, table = FALSE) # deprecated -> use getMe thodsForDispatch()[] [1200] [1201] [1202] Underfull \hbox (badness 3792) in paragraph at lines 2572--2575 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/pcr/m/n/10 setGeneric[][][] []\ T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c re-ate ob-jects of class Underfull \hbox (badness 1194) in paragraph at lines 2603--2607 []\T1/ptm/m/n/10 Object of class []\T1/pcr/m/n/10 "optionalMethod" []\T1/ptm/m/ n/10 (a union of classes []\T1/pcr/m/n/10 "function" []\T1/ptm/m/n/10 and [1203] Overfull \hbox (24.78088pt too wide) in paragraph at lines 2659--2659 []\T1/pcr/m/n/10 removeMethods(f, where = topenv(parent.frame()), all = missin g(where))[] [1204] [1205] [1206] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2882--2882 []\T1/pcr/m/n/9 ## get the function "myFun" -- throw an error if 0 or > 1 vers ions visible:[] [1207] [1208] [1209] [1210] [1211] [1212] [1213] Underfull \hbox (badness 10000) in paragraph at lines 3405--3410 []\T1/ptm/m/n/10 Function []\T1/pcr/m/n/10 implicitGeneric() []\T1/ptm/m/n/10 r e-turns the im-plicit generic ver-sion, Underfull \hbox (badness 6268) in paragraph at lines 3405--3410 []\T1/pcr/m/n/10 setGenericImplicit() []\T1/ptm/m/n/10 turns a generic im-plici t, []\T1/pcr/m/n/10 prohibitGeneric() []\T1/ptm/m/n/10 pre-vents [1214] [1215] Underfull \hbox (badness 10000) in paragraph at lines 3533--3537 []\T1/ptm/m/n/10 For a class (or class def-i-ni-tion, see [][][]\T1/pcr/m/n/10 getClass[][][] []\T1/ptm/m/n/10 and the de-scrip-tion of class [1216] Overfull \hbox (14.78088pt too wide) in paragraph at lines 3642--3651 [] [1217] [1218] Underfull \hbox (badness 10000) in paragraph at lines 3762--3763 [] \T1/pcr/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit ude = Underfull \hbox (badness 10000) in paragraph at lines 3809--3810 []\T1/pcr/m/n/10 setMethod("plot", c("Pos", "missing"), function(x, y, ...) { [1219] Underfull \hbox (badness 10000) in paragraph at lines 3846--3847 []\T1/pcr/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character") , Underfull \hbox (badness 6157) in paragraph at lines 3908--3912 []\T1/ptm/m/n/10 A call to [][][]\T1/pcr/m/n/10 selectSuperClasses[][][](cl) [] \T1/ptm/m/n/10 re-turns a list of su-per-classes, sim-i-larly to [1220] [1221] [1222] [1223] [1224] [1225] Overfull \hbox (18.78088pt too wide) in paragraph at lines 4313--4313 []\T1/pcr/m/n/10 makeClassRepresentation(name, slots=list(), superClasses=char acter(), Overfull \hbox (0.78088pt too wide) in paragraph at lines 4314--4314 [] \T1/pcr/m/n/10 prototype=NULL, package, validity, ac cess,[] [1226] Overfull \hbox (0.78088pt too wide) in paragraph at lines 4371--4371 []\T1/pcr/m/n/10 method.skeleton(generic, signature, file, external = FALSE, w here) [1227] [1228] Underfull \hbox (badness 2126) in paragraph at lines 4516--4524 []\T1/ptm/m/n/10 For ad-di-tional in-for-ma-tion see doc-u-men-ta-tion for the im-por-tant steps: ([][][]\T1/pcr/m/n/10 setMethod[][][]()[]\T1/ptm/m/n/10 , [1229] [1230] Underfull \vbox (badness 5681) has occurred while \output is active [1231] Underfull \hbox (badness 10000) in paragraph at lines 4753--4762 []\T1/ptm/m/n/10 In prin-ci-ple, a generic func-tion could be any func-tion tha t eval-u-ates a call to [1232] [1233] [1234] [1235] [1236] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5137--5137 []\T1/pcr/m/n/9 f3 <- function(x)UseMethod("f3") # an S3 generic to illustrate inheritance[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 5165--5165 []\T1/pcr/m/n/9 stopifnot(identical(abs(y), abs(x))) # (version 2.9.0 or earli er fails here)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5179--5179 []\T1/pcr/m/n/9 ## The S3 method for classA and the closest inherited S3 metho d for classB[] Underfull \vbox (badness 10000) has occurred while \output is active [1237] [1238] Underfull \hbox (badness 10000) in paragraph at lines 5297--5298 []\T1/pcr/m/n/10 unique.uncased <- function(x, incomparables = FALSE, ...) [1239] [1240] Underfull \hbox (badness 3803) in paragraph at lines 5452--5454 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1241] [1242] [1243] Underfull \hbox (badness 1087) in paragraph at lines 5683--5688 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1244] [1245] [1246] [1247] [1248] [1249] Underfull \hbox (badness 10000) in paragraph at lines 6149--6165 []\T1/ptm/m/n/10 The de-fault method for []\T1/pcr/m/n/10 $initialize() []\T1/p tm/m/n/10 is equiv-a-lent to in-vok-ing the method [1250] [1251] Underfull \hbox (badness 1248) in paragraph at lines 6282--6286 []\T1/ptm/m/n/10 Typically, a spe-cial-ized []\T1/pcr/m/n/10 $initialize() []\T 1/ptm/m/n/10 method car-ries out its own com-pu-ta-tions, Underfull \hbox (badness 1960) in paragraph at lines 6282--6286 \T1/ptm/m/n/10 then in-vokes []\T1/pcr/m/n/10 $initFields() []\T1/ptm/m/n/10 to per-form stan-dard ini-tial-iza-tion, as shown in the [1252] Underfull \hbox (badness 4647) in paragraph at lines 6437--6439 []\T1/ptm/m/n/10 This method is equiv-a-lent to call-ing the gen-er-a-tor func- tion re-turned by [1253] [1254] Underfull \hbox (badness 2875) in paragraph at lines 6586--6595 []\T1/ptm/m/n/10 Reference classes can have va-lid-ity meth-ods in the same sen se as any S4 class (see Underfull \hbox (badness 1436) in paragraph at lines 6586--6595 [][][]\T1/pcr/m/n/10 setValidity[][][][]\T1/ptm/m/n/10 ). Such meth-ods are of- ten a good idea; they will be called by call-ing [1255] Underfull \vbox (badness 10000) has occurred while \output is active [1256] [1257] [1258]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.S4}) has been already used, duplicate ignored \relax l.6911 \aliasA{S4}{S3Part}{S4} [1259] Overfull \hbox (66.78088pt too wide) in paragraph at lines 6947--6947 []\T1/pcr/m/n/10 ## Create a new object from the class or use the replacement version of as().[] [1260] [1261] Overfull \hbox (25.98041pt too wide) in paragraph at lines 7138--7138 []\T1/pcr/m/n/9 fit <- lm(sepal ~ Petal.Length + Petal.Width + Species, data = datasets::iris)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 7142--7142 []\T1/pcr/m/n/9 myReg <- setClass("myReg", slots = c(title = "character"), con tains = "mlm")[] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex}) has been already used, duplicate ignored \relax l.7167 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7169 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7170 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.matrixOps}) has been already used, duplicate i gnored \relax l.7172 ...sA{matrixOps}{S4groupGeneric}{matrixOps} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7173 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7174 \aliasA{Summary}{S4groupGeneric}{Summary} [1262] Underfull \hbox (badness 3907) in paragraph at lines 7230--7235 []\T1/ptm/m/n/10 There are also S3 groups []\T1/pcr/m/n/10 Math[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Ops[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Summary[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 Complex []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 matrixOps[ ]\T1/ptm/m/n/10 , see Underfull \hbox (badness 2050) in paragraph at lines 7236--7240 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1263] Underfull \hbox (badness 6708) in paragraph at lines 7249--7261 []\T1/pcr/m/n/10 "abs"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sign"[]\T1/ptm/m/n/1 0 , []\T1/pcr/m/n/10 "sqrt"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ceiling"[]\T1/p tm/m/n/10 , []\T1/pcr/m/n/10 "floor"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "trunc" []\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cummax"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 2012) in paragraph at lines 7249--7261 []\T1/pcr/m/n/10 "acosh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "asin"[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 "asinh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "atan"[]\T1/p tm/m/n/10 , []\T1/pcr/m/n/10 "atanh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "exp"[] \T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "expm1"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "c os"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3209) in paragraph at lines 7249--7261 []\T1/pcr/m/n/10 "cosh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cospi"[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 "sin"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sinh"[]\T1/ptm /m/n/10 , []\T1/pcr/m/n/10 "sinpi"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tan"[]\T 1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tanh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tanp i"[]\T1/ptm/m/n/10 , Overfull \hbox (58.38037pt too wide) in paragraph at lines 7323--7323 []\T1/pcr/m/n/9 selectMethod("Re", signature = "testComplex") # shows Generic: .. "Re" & .."Complex"[] [1264] [1265] Underfull \hbox (badness 1694) in paragraph at lines 7412--7414 []\T1/ptm/m/n/10 name of the class or (more ef-fi-ciently) the class def-i-ni-t ion ob-ject (see Underfull \hbox (badness 10000) in paragraph at lines 7436--7439 []\T1/ptm/m/n/10 The typ-i-cal user level func-tion is []\T1/pcr/m/n/10 selectS uperClasses() []\T1/ptm/m/n/10 which calls [1266] Overfull \hbox (20.58041pt too wide) in paragraph at lines 7457--7457 []\T1/pcr/m/n/9 selectSuperClasses("C", dropVirtual=TRUE, directOnly=FALSE)# d itto w/o "Root"[] [1267] [1268] [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] Overfull \hbox (0.78088pt too wide) in paragraph at lines 8571--8571 []\T1/pcr/m/n/10 setGroupGeneric(name, def= , group=list(), valueClass=charact er(), [1280] [1281] Overfull \hbox (6.78088pt too wide) in paragraph at lines 8646--8646 [] \T1/pcr/m/n/10 by = character(), where = topenv(parent.frame()), class Def =,[] [1282] [1283] [1284] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8908--8908 []\T1/pcr/m/n/9 ## "trackMultiCurve", by making the y, smooth slots into 1-col umn matrices[] [1285] [1286] [1287] Overfull \hbox (4.38043pt too wide) in paragraph at lines 9115--9115 [] \T1/pcr/m/n/9 setLoadAction(function(ns) assign("myCount", 0, envir = ns), "setCount")[] [1288] [1289] Underfull \vbox (badness 2302) has occurred while \output is active [1290] Overfull \hbox (15.18042pt too wide) in paragraph at lines 9377--9377 []\T1/pcr/m/n/9 ## Using a short form for the signature, which matches like fo rmal arguments[] [1291] [1292] [1293] [1294] Overfull \hbox (9.78043pt too wide) in paragraph at lines 9685--9685 []\T1/pcr/m/n/9 ## Define a new generic function to compute the residual degre es of freedom[] [1295] Overfull \hbox (15.18042pt too wide) in paragraph at lines 9795--9795 []\T1/pcr/m/n/9 ## Not run: [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,1 0] [,11] [,12][] [1296] Overfull \hbox (15.18042pt too wide) in paragraph at lines 9806--9806 []\T1/pcr/m/n/9 ## Not run: [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,1 0] [,11] [,12][] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] Underfull \hbox (badness 4193) in paragraph at lines 10440--10443 []\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance in R [][]$\T1/pcr/m/n/10 https : / / johnmchambers . su . [1305] Underfull \hbox (badness 10000) in paragraph at lines 10510--10512 []\T1/ptm/m/n/10 Object of the orig-i-nal class; e.g., []\T1/pcr/m/n/10 "functi on" []\T1/ptm/m/n/10 for class Underfull \hbox (badness 1852) in paragraph at lines 10518--10522 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., Underfull \hbox (badness 1681) in paragraph at lines 10518--10522 []\T1/pcr/m/n/10 "functionWithTrace" []\T1/ptm/m/n/10 ex-tends []\T1/pcr/m/n/10 "function"[]\T1/ptm/m/n/10 . Each of the spe-cific classes ex-tends [1306] [1307] [1308] [1309]) (./parallel-pkg.tex [1310] Chapter 8. Underfull \hbox (badness 2418) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/p cr/m/n/10 "L\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][] RNG[][][]: see [1311] Underfull \hbox (badness 4242) in paragraph at lines 96--98 []\T1/ptm/m/n/10 a vec-tor for []\T1/pcr/m/n/10 clusterApply []\T1/ptm/m/n/10 a nd []\T1/pcr/m/n/10 clusterApplyLB[]\T1/ptm/m/n/10 , a ma-trix for [1312] [1313] Underfull \hbox (badness 1024) in paragraph at lines 213--216 []\T1/ptm/m/n/10 Two ex-cep-tions: []\T1/pcr/m/n/10 parLapply []\T1/ptm/m/n/10 has ar-gu-ment []\T1/pcr/m/n/10 X []\T1/ptm/m/n/10 not []\T1/pcr/m/n/10 x []\T1 /ptm/m/n/10 for con-sis-tency with [][][]\T1/pcr/m/n/10 lapply[][][][]\T1/ptm/m /n/10 , and [1314] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1315] [1316] Underfull \hbox (badness 10000) in paragraph at lines 447--449 []\T1/ptm/m/n/10 Character vec-tor of ad-di-tional ar-gu-ments for []\T1/pcr/m/ n/10 Rscript []\T1/ptm/m/n/10 such as [1317] [1318] [1319] [1320] [1321] Underfull \hbox (badness 1917) in paragraph at lines 795--804 []\T1/pcr/m/n/10 mcfork []\T1/ptm/m/n/10 re-turns an ob-ject of the class []\T1 /pcr/m/n/10 "childProcess" []\T1/ptm/m/n/10 to the mas-ter and of class Underfull \hbox (badness 1178) in paragraph at lines 795--804 []\T1/pcr/m/n/10 "masterProcess" []\T1/ptm/m/n/10 to the child: both the classe s in-herit from class []\T1/pcr/m/n/10 "process"[]\T1/ptm/m/n/10 . If [1322] [1323] Overfull \hbox (60.78088pt too wide) in paragraph at lines 888--888 [] \T1/pcr/m/n/10 mc.cleanup = TRUE, mc.allow.recursive = TRUE, affini ty.list = NULL)[] [1324] [1325] [1326] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1079--1079 []\T1/pcr/m/n/9 mclapply(list(A, A, A), first, mc.preschedule = FALSE, affinit y.list = affL)[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 1083--1083 []\T1/pcr/m/n/9 # To optimize the overall execution time elements of X are sch eduled to suitable CPUs[] [1327] Underfull \hbox (badness 5388) in paragraph at lines 1198--1203 []\T1/pcr/m/n/10 mcparallel []\T1/ptm/m/n/10 re-turns an ob-ject of the class [ ]\T1/pcr/m/n/10 "parallelJob" []\T1/ptm/m/n/10 which in-her-its from [1328] Underfull \hbox (badness 10000) in paragraph at lines 1222--1230 []\T1/ptm/m/n/10 The be-haviour with []\T1/pcr/m/n/10 mc.set.seed = TRUE []\T1/ ptm/m/n/10 is dif-fer-ent only if Overfull \hbox (9.78043pt too wide) in paragraph at lines 1258--1258 []\T1/pcr/m/n/9 mccollect(p, wait = FALSE, 10) # will retrieve the result (sin ce it\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s fast)[] [1329] [1330] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1373--1373 [] \T1/pcr/m/n/9 as.integer(runif(N, 1, 12)), as.integer(runif (N, 1, 28)))[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1387--1387 []\T1/pcr/m/n/9 system.time(c <- unlist(mclapply(dates, as.POSIXct, format = "%Y-%m-%d")))[] [1331] Underfull \hbox (badness 1577) in paragraph at lines 1416--1419 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/pcr/m/n/10 .Random.seed []\T1/ptm/m/n/10 when the Underfull \hbox (badness 3375) in paragraph at lines 1463--1465 []\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 nextRNGStream []\T1/ptm/m/n/10 and []\T1/ pcr/m/n/10 nextRNGSubStream[]\T1/ptm/m/n/10 , a value which can be as-signed to [1332] [1333]) (./splines-pkg.tex [1334] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/pcr/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] Overfull \hbox (4.38043pt too wide) in paragraph at lines 508--508 []\T1/pcr/m/n/9 ispl <- polySpline(interpSpline( weight ~ height, women, bSpl ine = TRUE))[] [1343] Underfull \hbox (badness 1043) in paragraph at lines 609--611 []\T1/ptm/m/n/10 An in-te-ger be-tween 0 and []\T1/pcr/m/n/10 splineOrder(objec t) - 1 []\T1/ptm/m/n/10 spec-i-fy-ing the [1344] [1345] Overfull \hbox (25.98041pt too wide) in paragraph at lines 723--723 []\T1/pcr/m/n/9 Matrix::drop0(zapsmall(6*splineDesign(knots = 1:40, x = 4:37, sparse = TRUE)))[] [1346] [1347] [1348]) (./stats-pkg.tex Chapter 10. [1349] Underfull \hbox (badness 1077) in paragraph at lines 71--74 []\T1/pcr/m/n/10 .MFclass() []\T1/ptm/m/n/10 re-turns a char-ac-ter string, one of []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ordered"[]\T 1/ptm/m/n/10 , []\T1/pcr/m/n/10 "factor"[]\T1/ptm/m/n/10 , Overfull \hbox (69.18036pt too wide) in paragraph at lines 91--91 []\T1/pcr/m/n/9 (xl <- .getXlevels(terms(mf), mf)) # a list with one entry " $ Species" with 3 levels:[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 94--94 [] \T1/pcr/m/n/9 identical(.getXlevels(terms(mc), mc), xl[0]) # a empty named list, as no factors[] [1350] [1351] [1352] [1353] [1354] Overfull \hbox (20.58041pt too wide) in paragraph at lines 445--445 []\T1/pcr/m/n/9 add1(glm.D93, scope = ~outcome*treatment, test = "Rao") ## Pea rson Chi-square[] [1355] Overfull \hbox (6.78088pt too wide) in paragraph at lines 468--468 []\T1/pcr/m/n/10 addmargins(A, margin = seq_along(dim(A)), FUN = sum, quiet = FALSE) [1356] [1357] [1358] [1359] [1360] [1361] Underfull \hbox (badness 1024) in paragraph at lines 901--903 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/pcr/m/n/10 l m []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] Overfull \hbox (12.78088pt too wide) in paragraph at lines 1645--1645 [] \T1/pcr/m/n/10 yleft, yright, rule = 1, f = 0, ties = mean, na.rm = TRUE)[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 1648--1648 [] \T1/pcr/m/n/10 yleft, yright, rule = 1, f = 0, ties = mean, na.rm = TRUE)[] [1374] [1375] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1795--1795 [] \T1/pcr/m/n/9 approx(xn, yn, xout=xout, method=M, rule=R, n a.rm=na.)$y),[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 1807--1807 []\T1/pcr/m/n/9 (amy <- approx(x, y, xout = x)$y) # warning, can be avoided by specifying \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ties=\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 :[ ] [1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2826--2826 []\T1/pcr/m/n/10 ARMAacf(ar = numeric(), ma = numeric(), lag.max = r, pacf = F ALSE) [1391] [1392] [1393] [1394] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3081--3081 []\T1/pcr/m/n/9 lines(ave(breaks, wool, tension, FUN = median), type = "s", co l = "green")[] [1395] [1396] [1397] Underfull \hbox (badness 10000) in paragraph at lines 3295--3297 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Bartlett test of homo geneity of [1398] Overfull \hbox (6.78088pt too wide) in paragraph at lines 3344--3344 []\T1/pcr/m/n/10 pbeta(q, shape1, shape2, ncp = 0, lower.tail = TRUE, log.p = FALSE)[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 3345--3345 []\T1/pcr/m/n/10 qbeta(p, shape1, shape2, ncp = 0, lower.tail = TRUE, log.p = FALSE)[] [1399] [1400] [1401] [1402] Package amsmath Warning: Foreign command \atopwithdelims; (amsmath) \frac or \genfrac should be used instead (amsmath) on input line 3684. [1403] Overfull \hbox (9.78043pt too wide) in paragraph at lines 3750--3750 []\T1/pcr/m/n/9 plot (k, dbinom(k, n, pi/10, log = TRUE), type = "l", ylab = " log density",[] [1404] [1405] [1406] [1407] Overfull \hbox (12.78088pt too wide) in paragraph at lines 4029--4029 []\T1/pcr/m/n/10 Box.test(x, lag = 1, type = c("Box-Pierce", "Ljung-Box"), fit df = 0) [1408] [1409] [1410] [1411] [1412] Overfull \hbox (18.78088pt too wide) in paragraph at lines 4318--4318 []\T1/pcr/m/n/10 pcauchy(q, location = 0, scale = 1, lower.tail = TRUE, log.p = FALSE)[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 4319--4319 []\T1/pcr/m/n/10 qcauchy(p, location = 0, scale = 1, lower.tail = TRUE, log.p = FALSE)[] [1413] [1414] [1415] [1416] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4560--4560 []\T1/pcr/m/n/9 chisq.test(x, p = p) # maybe doubtful , but is ok![] [1417] [1418] Overfull \hbox (20.58041pt too wide) in paragraph at lines 4735--4735 [] \T1/pcr/m/n/9 plot(pp, sort(pchisq(rr <- rchisq(n, df = df, ncp = L), df = df, ncp = L)),[] [1419] [1420] Underfull \hbox (badness 3989) in paragraph at lines 4830--4837 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1421] [1422] [1423] Overfull \hbox (66.78088pt too wide) in paragraph at lines 5058--5058 []\T1/pcr/m/n/10 confint(object, parm, level = 0.95, trace = FALSE, test=c("LR T", "Rao"), ...)[] [1424] [1425] Overfull \hbox (25.98041pt too wide) in paragraph at lines 5232--5232 []\T1/pcr/m/n/9 constrOptim(c(-1.2,0.9), fr, grr, ui = rbind(c(-1,0), c(0,-1)) , ci = c(-1,-1))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5234--5234 []\T1/pcr/m/n/9 constrOptim(c(.5,0), fr, grr, ui = rbind(c(-1,0), c(1,-1)), ci = c(-0.9,0.1))[] [1426] [1427] [1428] [1429] Overfull \hbox (9.78043pt too wide) in paragraph at lines 5456--5456 []\T1/pcr/m/n/9 ## using sparse contrasts: % useful, once model.matrix() works with these :[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 5474--5474 []\T1/pcr/m/n/10 convolve(x, y, conj = TRUE, type = c("circular", "open", "fil ter")) [1430] [1431] [1432] Underfull \hbox (badness 1436) in paragraph at lines 5684--5689 []\T1/ptm/m/n/10 an op-tional char-ac-ter string giv-ing a method for com-put-i ng co-vari-ances Underfull \hbox (badness 1377) in paragraph at lines 5684--5689 \T1/ptm/m/n/10 in the pres-ence of miss-ing val-ues. This must be (an ab-bre-vi -a-tion of) Underfull \hbox (badness 1448) in paragraph at lines 5684--5689 \T1/ptm/m/n/10 one of the strings []\T1/pcr/m/n/10 "everything"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "all.obs"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "complete.obs" []\T1/ptm/m/n/10 , [1433] [1434] Underfull \vbox (badness 10000) has occurred while \output is active [1435] Overfull \hbox (0.78088pt too wide) in paragraph at lines 5885--5885 [] \T1/pcr/m/n/10 exact = NULL, conf.level = 0.95, continuity = FALSE, ...)[] [1436] [1437] Overfull \hbox (6.78088pt too wide) in paragraph at lines 6052--6052 []\T1/pcr/m/n/10 cov.wt(x, wt = rep(1/nrow(x), nrow(x)), cor = FALSE, center = TRUE, [1438] [1439] [1440] Overfull \hbox (6.78088pt too wide) in paragraph at lines 6236--6236 []\T1/pcr/m/n/10 decompose(x, type = c("additive", "multiplicative"), filter = NULL) [1441] [1442] Overfull \hbox (84.78088pt too wide) in paragraph at lines 6345--6345 []\T1/pcr/m/n/10 reformulate(termlabels, response = NULL, intercept = TRUE, en v = parent.frame())[] Underfull \hbox (badness 10000) in paragraph at lines 6364--6369 []\T1/ptm/m/n/10 a nu-meric vec-tor in-dex-ing []\T1/pcr/m/n/10 labels(termobj) []\T1/ptm/m/n/10 (that is, the [1443] [1444] [1445] [1446] Underfull \hbox (badness 5954) in paragraph at lines 6614--6616 []\T1/ptm/m/n/10 logical in-di-cat-ing if a box around the plot should be drawn , see [1447] Underfull \hbox (badness 2503) in paragraph at lines 6695--6698 []\T1/ptm/m/n/10 Objects of class []\T1/pcr/m/n/10 "hclust" []\T1/ptm/m/n/10 ca n be con-verted to class []\T1/pcr/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 5563) in paragraph at lines 6699--6701 []\T1/pcr/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g ram []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also Underfull \hbox (badness 1655) in paragraph at lines 6702--6707 \T1/ptm/m/n/10 has []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 y [ ]\T1/ptm/m/n/10 (and op-tional fur-ther ar-gu-ments) as branches. Note that be- fore \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.1.2, [1448] Underfull \hbox (badness 7238) in paragraph at lines 6738--6741 [][][]\T1/pcr/m/n/10 dendrapply[][][] []\T1/ptm/m/n/10 for ap-ply-ing a func-ti on to \T1/ptm/m/it/10 each \T1/ptm/m/n/10 node. [][][]\T1/pcr/m/n/10 order.dend rogram[][][] []\T1/ptm/m/n/10 and Overfull \hbox (4.38043pt too wide) in paragraph at lines 6750--6750 []\T1/pcr/m/n/9 str(dend1, max.level = 2, last.str = "\TS1/pcr/m/n/9 '\T1/pcr /m/n/9 ") # only the first two sub-levels[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6773--6773 []\T1/pcr/m/n/9 plot(dend2$lower[[3]], nodePar = list(col = 4), horiz = TRUE, type = "tr")[] [1449] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6788--6788 []\T1/pcr/m/n/9 ## merge() all parts back (using default \TS1/pcr/m/n/9 '\T1/p cr/m/n/9 height\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 instead of original one):[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6803--6803 []\T1/pcr/m/n/9 plot(d3, nodePar= nP, edgePar = list(col = "gray", lwd = 2), h oriz = TRUE)[] [1450] [1451] [1452] [1453] Overfull \hbox (25.98041pt too wide) in paragraph at lines 7088--7088 []\T1/pcr/m/n/9 abline(h = 1/1022, v = range(x), lty=2); axis(2, at=1/1022, "1 /(2n-2)", las=1)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7093--7093 [] \T1/pcr/m/n/9 function(k) density(kernel = k, give.Rker n = TRUE))))[] [1454] [1455] [1456] [1457] [1458] [1459] Underfull \hbox (badness 10000) in paragraph at lines 7493--7497 []\T1/pcr/m/n/10 "maximum"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "manhattan"[]\T1/ ptm/m/n/10 , []\T1/pcr/m/n/10 "canberra"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "bi nary" []\T1/ptm/m/n/10 or [1460] Underfull \hbox (badness 6493) in paragraph at lines 7595--7598 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from []\T1/ pcr/m/n/10 dist()[]\T1/ptm/m/n/10 , the [1461] [1462] Underfull \hbox (badness 10000) in paragraph at lines 7732--7735 []\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/pcr/m/n/10 ht tps : / / CRAN . R-[]project . org / view = [1463] [1464] [1465] [1466] [1467] [1468] [1469] Underfull \hbox (badness 10000) in paragraph at lines 8144--8149 []\T1/ptm/m/n/10 Each row of the re-sult-ing ma-trix con-sists of se-quences [] \T1/pcr/m/n/10 x[t][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 x[t-1][]\T1/ptm/m/n/10 , ..., [1470] [1471] [1472] [1473] [1474] Underfull \hbox (badness 1107) in paragraph at lines 8472--8475 []\T1/ptm/m/n/10 the [][][]\T1/pcr/m/n/10 na.action[][][] []\T1/ptm/m/n/10 to b e used if []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 is used as a for-mula, in which c ase [1475] [1476] [1477] [1478] [1479] [1480] [1481] Overfull \hbox (15.18042pt too wide) in paragraph at lines 8970--8970 []\T1/pcr/m/n/9 glm.qD93 <- glm(counts ~ outcome + treatment, d.AD, family = q uasipoisson())[] Underfull \vbox (badness 10000) has occurred while \output is active [1482] Overfull \hbox (31.3804pt too wide) in paragraph at lines 9015--9015 []\T1/pcr/m/n/9 ## Not run: glm(y ~ x, family = quasi(variance = "mu^3", link = "log")) # fails[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 9018--9018 []\T1/pcr/m/n/9 glm(y ~ x, family = quasi(variance = "mu(1-mu)", link = "logit "), start = c(0,1))[] [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] Overfull \hbox (15.18042pt too wide) in paragraph at lines 9591--9591 [] \T1/pcr/m/n/9 dimnames = list(income = c("< 15k", "15-25k", "25-4 0k", "> 40k"),[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 9592--9592 [] \T1/pcr/m/n/9 satisfaction = c("VeryD", "LittleD", "Mod erateS", "VeryS")))[] [1491] [1492] [1493] Underfull \hbox (badness 7291) in paragraph at lines 9772--9774 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Fligner-Killeen test of homogeneity of [1494] [1495] [1496] [1497] [1498] [1499] [1500] Underfull \hbox (badness 6944) in paragraph at lines 10265--10271 [][][]\T1/pcr/m/n/10 ftable.formula[][][] []\T1/ptm/m/n/10 for the for-mula in- ter-face (which al-lows a []\T1/pcr/m/n/10 data = . []\T1/ptm/m/n/10 ar-gu-ment ); [1501] [1502] [1503] Underfull \hbox (badness 3758) in paragraph at lines 10479--10482 []\T1/ptm/m/n/10 See also [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [1504] [1505] [1506] [1507] Overfull \hbox (6.78088pt too wide) in paragraph at lines 10724--10724 [] \T1/pcr/m/n/10 x = FALSE, y = TRUE, singular.ok = TRUE, contrasts = NULL , ...)[] Underfull \hbox (badness 4518) in paragraph at lines 10750--10755 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1508] Underfull \hbox (badness 4132) in paragraph at lines 10791--10795 []\T1/ptm/m/n/10 the method to be used in fit-ting the model. The de-fault meth od Underfull \hbox (badness 1112) in paragraph at lines 10845--10851 []\T1/ptm/m/n/10 A spec-i-fi-ca-tion of the form []\T1/pcr/m/n/10 first:second []\T1/ptm/m/n/10 in-di-cates the set of terms ob-tained by tak- [1509] Underfull \hbox (badness 10000) in paragraph at lines 10901--10904 []\T1/ptm/m/n/10 The generic ac-ces-sor func-tions [][][]\T1/pcr/m/n/10 coeffic ients[][][][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 effects[]\T1/ptm/m/n/10 , []\T1/ pcr/m/n/10 fitted.values []\T1/ptm/m/n/10 and [1510] [1511] [1512] Underfull \hbox (badness 2142) in paragraph at lines 11118--11121 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ [1513] Underfull \hbox (badness 1708) in paragraph at lines 11199--11203 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1514] Underfull \hbox (badness 10000) in paragraph at lines 11241--11247 [][][]\T1/pcr/m/n/10 glm[][][] []\T1/ptm/m/n/10 for com-put-ing []\T1/pcr/m/n/1 0 glm.obj[]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 anova.glm[][][][]\T1/ptm/m/n/1 0 ; the cor-re-spond-ing \T1/ptm/m/it/10 generic \T1/ptm/m/n/10 func-tions, Underfull \hbox (badness 1418) in paragraph at lines 11279--11284 []\T1/pcr/m/n/10 "average" []\T1/ptm/m/n/10 (= UP-GMA), []\T1/pcr/m/n/10 "mcqui tty" []\T1/ptm/m/n/10 (= WPGMA), []\T1/pcr/m/n/10 "median" []\T1/ptm/m/n/10 (= [1515] [1516] Underfull \hbox (badness 2635) in paragraph at lines 11412--11415 \T1/ptm/m/n/10 There are [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/n/10 , [][ ][]\T1/pcr/m/n/10 plot[][][] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 identify []\ T1/ptm/m/n/10 (see [][][]\T1/pcr/m/n/10 identify.hclust[][][][]\T1/ptm/m/n/10 ) meth-ods and the [1517] [1518] [1519] Underfull \hbox (badness 1694) in paragraph at lines 11597--11600 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1520] [1521] Overfull \hbox (25.98041pt too wide) in paragraph at lines 11710--11710 []\T1/pcr/m/n/9 heatmap(Ca, Rowv = FALSE, symm = TRUE, RowSideColors = cc, Col SideColors = cc,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 11743--11743 [] \T1/pcr/m/n/10 optim.start = c(alpha = 0.3, beta = 0.1, gamma = 0.1),[] Underfull \hbox (badness 10000) in paragraph at lines 11756--11760 []\T1/ptm/m/n/10 Character string to se-lect an []\T1/pcr/m/n/10 "additive" []\ T1/ptm/m/n/10 (the de-fault) or [1522] [1523] [1524] [1525] [1526] [1527] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12080--12080 []\T1/pcr/m/n/9 identify(hci, function(k) barplot(table(iris[k,5]), col = 2:4) , DEV.FUN = nD)[] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has been already used, duplicate ignored \relax l.12095 \aliasA{hat}{influence.measures}{hat} [1528] Overfull \hbox (0.78088pt too wide) in paragraph at lines 12158--12158 []\T1/pcr/m/n/10 cooks.distance(model, infl = lm.influence(model, do.coef = FA LSE),[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 12170--12170 []\T1/pcr/m/n/10 hatvalues(model, infl = lm.influence(model, do.coef = FALSE), ...)[] [1529] Underfull \hbox (badness 1062) in paragraph at lines 12223--12228 []\T1/ptm/m/n/10 The op-tional []\T1/pcr/m/n/10 infl[]\T1/ptm/m/n/10 , []\T1/pc r/m/n/10 res []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 sd []\T1/ptm/m/n/10 ar-gu-me nts are there to en-cour-age the use of these di- Underfull \hbox (badness 1052) in paragraph at lines 12240--12242 []\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1530] Underfull \vbox (badness 10000) has occurred while \output is active [1531] [1532] [1533] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12476--12476 []\T1/pcr/m/n/9 integrate(dnorm, 0, 20000) ## "fails" on many systems -- "wron gly" giving \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 0\TS1/pcr/m/n/9 '[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 12495--12495 [] \T1/pcr/m/n/10 type = c("l", "p", "b", "o", "c"), legend = TRUE,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 12496--12496 [] \T1/pcr/m/n/10 trace.label = deparse1(substitute(trace.fact or)),[] [1534] [1535] [1536] [1537] [1538] Underfull \hbox (badness 10000) in paragraph at lines 12827--12829 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/pcr/m/n/10 solve.de fault[][][] []\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 SSinit = Underfull \hbox (badness 4739) in paragraph at lines 12850--12852 []\T1/ptm/m/n/10 the es-ti-mate at time $\OML/cmm/m/it/10 t \OMS/cmsy/m/n/10 ^^ @ \OT1/cmr/m/n/10 1$ \T1/ptm/m/n/10 of the state un-cer-tainty ma-trix $\OML/cm m/m/it/10 Q$ \T1/ptm/m/n/10 (not up-dated by [1539] [1540] [1541] [1542] [1543] Underfull \hbox (badness 3417) in paragraph at lines 13163--13165 []\T1/ptm/m/n/10 an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of class []\T1/pcr/ m/n/10 "kmeans"[]\T1/ptm/m/n/10 , typ-i-cally the re-sult []\T1/pcr/m/n/10 ob [ ]\T1/ptm/m/n/10 of []\T1/pcr/m/n/10 ob <- Underfull \hbox (badness 2894) in paragraph at lines 13169--13173 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method Underfull \hbox (badness 1038) in paragraph at lines 13169--13173 \T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 "Hartigan-Wong"[]\T1/ptm/m/n/10 ): if pos-i-ti ve (or true), trac-ing in-for-ma-tion on the [1544] [1545] [1546] [1547] [1548] [1549] Underfull \hbox (badness 1496) in paragraph at lines 13597--13603 []\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran- dom-iza-tion Dis-tri-bu-tions of [1550] [1551] [1552] [1553] Overfull \hbox (4.38043pt too wide) in paragraph at lines 13852--13852 []\T1/pcr/m/n/9 lag.plot(sqrt(sunspots), set.lags = c(1:4, 9:12), pch = ".", c ol = "gold")[] [1554] [1555] Overfull \hbox (9.78043pt too wide) in paragraph at lines 13952--13952 []\T1/pcr/m/n/9 dimnames(cAS) <- list(paste("it =", format(1:10)), c("intercep t", "slope"))[] Underfull \hbox (badness 4518) in paragraph at lines 14000--14005 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1556] [1557] [1558] Underfull \hbox (badness 10000) in paragraph at lines 14203--14207 []\T1/ptm/m/n/10 More []\T1/pcr/m/n/10 lm() []\T1/ptm/m/n/10 ex-am-ples are ava il-able e.g., in [][][]\T1/pcr/m/n/10 anscombe[][][][]\T1/ptm/m/n/10 , [][][]\T 1/pcr/m/n/10 attitude[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 freeny[][][] []\T1/ptm/m/n/10 , [1559] [1560] [1561] [1562] [1563] [1564] Underfull \hbox (badness 1163) in paragraph at lines 14570--14578 \T1/ptm/m/n/10 els, [][][]\T1/pcr/m/n/10 influence[][][] []\T1/ptm/m/n/10 (etc on that page) for re-gres-sion di-ag-nos-tics, [][][]\T1/pcr/m/n/10 weighted.re siduals[][][][]\T1/ptm/m/n/10 , [1565] Underfull \hbox (badness 4518) in paragraph at lines 14692--14697 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1566] [1567] [1568] Overfull \hbox (12.78088pt too wide) in paragraph at lines 14882--14882 []\T1/pcr/m/n/10 plogis(q, location = 0, scale = 1, lower.tail = TRUE, log.p = FALSE)[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 14883--14883 []\T1/pcr/m/n/10 qlogis(p, location = 0, scale = 1, lower.tail = TRUE, log.p = FALSE)[] [1569] [1570] [1571] [1572] [1573] Overfull \hbox (6.78088pt too wide) in paragraph at lines 15227--15227 []\T1/pcr/m/n/10 plnorm(q, meanlog = 0, sdlog = 1, lower.tail = TRUE, log.p = FALSE)[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 15228--15228 []\T1/pcr/m/n/10 qlnorm(p, meanlog = 0, sdlog = 1, lower.tail = TRUE, log.p = FALSE)[] [1574] [1575] Overfull \hbox (18.78088pt too wide) in paragraph at lines 15321--15321 []\T1/pcr/m/n/10 lowess(x, y = NULL, f = 2/3, iter = 3, delta = 0.01 * diff(ra nge(x))) [1576] [1577] [1578] [1579] [1580] [1581] Underfull \hbox (badness 2726) in paragraph at lines 15730--15733 []\T1/ptm/m/n/10 character; one of []\T1/pcr/m/n/10 "logit"[]\T1/ptm/m/n/10 , [ ]\T1/pcr/m/n/10 "probit"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cauchit"[]\T1/ptm/ m/n/10 , []\T1/pcr/m/n/10 "cloglog"[]\T1/ptm/m/n/10 , [1582] Overfull \hbox (4.38043pt too wide) in paragraph at lines 15824--15824 []\T1/pcr/m/n/9 stopifnot(all.equal(pfm, pf2)) ## was off (rel.diff. 0.0766) i n R <= 3.5.0[] [1583] [1584] [1585] [1586] [1587] Overfull \hbox (42.78088pt too wide) in paragraph at lines 16081--16081 [] \T1/pcr/m/n/10 T = Thin.row(Proj(M) - Proj(X)), M = diag(nrow = p), X = ~0,[] [1588] [1589] [1590] [1591] [1592] Overfull \hbox (31.3804pt too wide) in paragraph at lines 16454--16454 []\T1/pcr/m/n/9 a <- model.frame(cbind(ncases,ncontrols) ~ agegp + tobgp + alc gp, data = esoph) [1593] [1594] Underfull \hbox (badness 1490) in paragraph at lines 16607--16612 \T1/ptm/m/n/10 those spec-i-fied in []\T1/pcr/m/n/10 ... []\T1/ptm/m/n/10 which are re-cy-cled to the num-ber of data frame rows. Un-like [1595] Overfull \hbox (4.38043pt too wide) in paragraph at lines 16643--16643 []\T1/pcr/m/n/9 model.frame(dist ~ speed, data = cars, subset = speed < 10, z = log(dist))[] Underfull \hbox (badness 1648) in paragraph at lines 16679--16681 []\T1/ptm/m/n/10 a data frame cre-ated with [][][]\T1/pcr/m/n/10 model.frame[][ ][][]\T1/ptm/m/n/10 . If an-other sort of ob-ject, [1596] Overfull \hbox (36.7804pt too wide) in paragraph at lines 16764--16764 []\T1/pcr/m/n/9 model.matrix(~ a + b, dd, contrasts.arg = list(a = "contr.sum" , b = contr.poly))[] [1597] Overfull \hbox (9.78043pt too wide) in paragraph at lines 16765--16765 []\T1/pcr/m/n/9 m.orth <- model.matrix(~a+b, dd, contrasts.arg = list(a = "con tr.helmert"))[] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605] Overfull \hbox (9.78043pt too wide) in paragraph at lines 17320--17320 []\T1/pcr/m/n/9 stopifnot(all(na.omit(1:3) == 1:3)) # does not affect objects with no NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s[] [1606] [1607] [1608] Overfull \hbox (25.98041pt too wide) in paragraph at lines 17553--17553 []\T1/pcr/m/n/9 persp(x, size, dnb <- outer(x, size, function(x,s) dnbinom(x, s, prob = 0.4)),[] [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616] [1617] [1618] Underfull \vbox (badness 10000) has occurred while \output is active [1619] Overfull \hbox (42.18039pt too wide) in paragraph at lines 18273--18273 []\T1/pcr/m/n/9 ## adjusting the convergence test by adding \TS1/pcr/m/n/9 '\T 1/pcr/m/n/9 scaleOffset\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 to its denominator RSS:[] Underfull \vbox (badness 10000) has occurred while \output is active [1620] Overfull \hbox (74.58035pt too wide) in paragraph at lines 18292--18292 []\T1/pcr/m/n/9 ## Here, requiring close convergence, must use more accurate n umerical differentiation,[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 18293--18293 []\T1/pcr/m/n/9 ## as this typically gives Error: "step factor .. reduced belo w \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 minFactor\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 .."[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 18297--18297 []\T1/pcr/m/n/9 ## central differencing works here typically (PR#18165: not co nverging on *some*):[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 18298--18298 []\T1/pcr/m/n/9 ctr2 <- nls.control(nDcentral=TRUE, tol = 8e-8, # <- even smal ler than above[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 18301--18301 [] \T1/pcr/m/n/9 (grepl("^aarch64.*linux", R.version$platform) && grepl ("^NixOS", osVersion)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 18333--18333 [] \T1/pcr/m/n/9 start = list(a = rep(b[2], 21), b = rep(b[3], 21 ), th = b[1]))[] [1621] [1622] [1623] Overfull \hbox (9.78043pt too wide) in paragraph at lines 18509--18509 []\T1/pcr/m/n/9 DN.srt <- sortedXyData(expression(log(conc)), expression(densi ty), DNase.2)[] [1624] Overfull \hbox (20.58041pt too wide) in paragraph at lines 18556--18556 []\T1/pcr/m/n/9 DN.srt <- sortedXyData( expression(log(conc)), expression(dens ity), DNase.2 )[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 18603--18603 []\T1/pcr/m/n/9 DN.srt <- sortedXyData( expression(log(conc)), expression(dens ity), DNase.2 )[] [1625] [1626] [1627] [1628] Overfull \hbox (102.78088pt too wide) in paragraph at lines 18820--18820 [] \T1/pcr/m/n/10 eps = .Machine$double.eps ^ (1/if(central) 3 els e 2), central = FALSE)[] [1629] [1630] [1631] [1632] Underfull \hbox (badness 10000) in paragraph at lines 19105--19111 []\T1/ptm/m/n/10 Method []\T1/pcr/m/n/10 "Brent" []\T1/ptm/m/n/10 is for one-di mensional prob-lems only, us-ing [][][]\T1/pcr/m/n/10 optimize[][][](, [1633] Underfull \hbox (badness 1248) in paragraph at lines 19141--19144 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 1661) in paragraph at lines 19154--19158 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 1478) in paragraph at lines 19162--19166 \T1/ptm/m/n/10 if []\T1/pcr/m/n/10 control$trace []\T1/ptm/m/n/10 is pos-i-tive . De-faults to ev-ery 10 it-er-a-tions for []\T1/pcr/m/n/10 "BFGS" []\T1/ptm/m/ n/10 and [1634] Underfull \hbox (badness 2042) in paragraph at lines 19220--19222 []\T1/ptm/m/n/10 indicates an er-ror from the []\T1/pcr/m/n/10 "L-BFGS-B" []\T1 /ptm/m/n/10 method; see com-po-nent [1635] Overfull \hbox (15.18042pt too wide) in paragraph at lines 19326--19326 [] \T1/pcr/m/n/9 lower = rep(2, 25), upper = rep(4, 25)) # par[24] is *no t* at boundary[] [1636] Overfull \hbox (9.78043pt too wide) in paragraph at lines 19369--19369 [] \T1/pcr/m/n/9 main = "initial solution of traveling salesman problem", axes = FALSE)[] Overfull \hbox (123.1803pt too wide) in paragraph at lines 19387--19387 []\T1/pcr/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (96.18033pt too wide) in paragraph at lines 19390--19390 []\T1/pcr/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1637] Overfull \hbox (36.78088pt too wide) in paragraph at lines 19410--19410 []\T1/pcr/m/n/10 optimize(f, interval, ..., lower = min(interval), upper = max (interval), Overfull \hbox (36.78088pt too wide) in paragraph at lines 19413--19413 []\T1/pcr/m/n/10 optimise(f, interval, ..., lower = min(interval), upper = max (interval),[] Underfull \hbox (badness 2564) in paragraph at lines 19448--19459 []\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 f []\T1/ptm/m/n/10 is never eva l-u-ated at two points closer to-gether than $\OML/cmm/m/it/10 ^^O$$\OMS/cmsy/m /n/10 j\OML/cmm/m/it/10 x[]\OMS/cmsy/m/n/10 j \OT1/cmr/m/n/10 + (\OML/cmm/m/it/ 10 tol=\OT1/cmr/m/n/10 3)$\T1/ptm/m/n/10 , Underfull \hbox (badness 1082) in paragraph at lines 19448--19459 \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 ^^O$ \T1/ptm/m/n/10 is ap-prox-i-mately []\T1/pcr/m/n/10 sqrt([][].Machine[][][]$double.eps) []\T1/ptm/m/n/10 and $\OML /cmm/m/it/10 x[]$ \T1/ptm/m/n/10 is the fi-nal ab-scissa [1638] Overfull \hbox (9.78043pt too wide) in paragraph at lines 19511--19511 []\T1/pcr/m/n/9 f <- function(x) ifelse(x > -1, ifelse(x < 4, exp(-1/abs(x - 1)), 10), 10)[] [1639] [1640] [1641] Overfull \hbox (9.78043pt too wide) in paragraph at lines 19741--19741 []\T1/pcr/m/n/9 matplot(p, p.adj, ylab="p.adjust(p, meth)", type = "l", asp = 1, lty = 1:6,[] [1642] [1643] Underfull \hbox (badness 1337) in paragraph at lines 19852--19855 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1644] [1645] [1646] [1647] [1648] Overfull \hbox (0.78088pt too wide) in paragraph at lines 20170--20170 [] \T1/pcr/m/n/10 par.fit = list(col = "red", cex = 1.5, pch = 13, lwd = 1.5),[] [1649] [1650] Overfull \hbox (24.78088pt too wide) in paragraph at lines 20257--20257 [] \T1/pcr/m/n/10 expression("Cook\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 s dist vs Leverage* " * h[ii] / (1 - h[ii]))),[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 20259--20259 [] \T1/pcr/m/n/10 panel.smooth(x, y, iter=iter.smooth, ...) else points,[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 20261--20261 [] \T1/pcr/m/n/10 ask = prod(par("mfcol")) < length(which) && dev.interact ive(),[] [1651] Underfull \hbox (badness 10000) in paragraph at lines 20321--20327 \T1/pcr/m/n/10 "bottomleft", legend = "Cook\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 s di stance", lty = cook.lty, Underfull \hbox (badness 10000) in paragraph at lines 20321--20327 \T1/pcr/m/n/10 col = cook.col, text.col = cook.col, bty = "n", x.intersp Underfull \hbox (badness 10000) in paragraph at lines 20329--20335 []\T1/ptm/m/n/10 the num-ber of ro-bust-ness it-er-a-tions, the ar-gu-ment []\T 1/pcr/m/n/10 iter []\T1/ptm/m/n/10 in Underfull \hbox (badness 10000) in paragraph at lines 20340--20343 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 1 or 2, to be used in []\T1/pcr/m /n/10 ylim <- [1652] [1653] [1654] [1655] Overfull \hbox (9.78043pt too wide) in paragraph at lines 20607--20607 []\T1/pcr/m/n/9 nlmod <- nls(y ~ Const + A * exp(B * x), start=list(Const=100 , A=10, B=1))[] [1656] [1657] Overfull \hbox (0.78088pt too wide) in paragraph at lines 20738--20738 [] \T1/pcr/m/n/10 main = NULL, ci.col = "blue", ci.lty = 3, ...)[] [1658] Underfull \hbox (badness 1194) in paragraph at lines 20748--20751 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1659] Underfull \hbox (badness 1107) in paragraph at lines 20806--20808 []\T1/ptm/m/n/10 numeric vec-tor of ab-scissa val-ues at which to eval-u-ate [] \T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . De-faults to Overfull \hbox (20.58041pt too wide) in paragraph at lines 20861--20861 []\T1/pcr/m/n/9 plot(sfun.2);plot(sfun.2, xval = tt, add = TRUE, col = "orange ") # all colors[] [1660] Overfull \hbox (31.3804pt too wide) in paragraph at lines 20868--20868 []\T1/pcr/m/n/9 legend(2.5, 1.9, paste("f =", c(0, 0.2, 1)), col = 1:3, lty = 1, y.intersp = 1)[] [1661] Overfull \hbox (20.58041pt too wide) in paragraph at lines 20962--20962 []\T1/pcr/m/n/9 title("plot(ts(..), axes=FALSE, ann=FALSE, frame.plot=TRUE, ma r..., oma...)")[] [1662] [1663] Overfull \hbox (4.38043pt too wide) in paragraph at lines 21090--21090 [] \T1/pcr/m/n/9 ppois(10*(15:25), lambda = 100, lower.tail = FALSE) # no cancellation[] [1664] Underfull \hbox (badness 7740) in paragraph at lines 21153--21155 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Exact Poisson test" [ ]\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 "Comparison of [1665] Overfull \hbox (6.78088pt too wide) in paragraph at lines 21201--21201 []\T1/pcr/m/n/10 poly(x, ..., degree = 1, coefs = NULL, raw = FALSE, simple = FALSE) [1666] Underfull \hbox (badness 10000) in paragraph at lines 21262--21264 []\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 poly(*, simple=TRUE)[]\T1/ptm/m/n/10 , [] \T1/pcr/m/n/10 polym(*, coefs=)[]\T1/ptm/m/n/10 , and Overfull \hbox (4.38043pt too wide) in paragraph at lines 21299--21299 [] \T1/pcr/m/n/9 zm <- zapsmall(polym ( 1:4, c(1, 4:6), degree = 3)) # or just poly():[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 21304--21304 []\T1/pcr/m/n/9 ## poly(, df) --- used to fail till July 14 (vive la F rance!), 2017:[] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] Overfull \hbox (58.38037pt too wide) in paragraph at lines 22158--22158 [] \T1/pcr/m/n/9 all.equal(pz3$sdev, pZ$sdev, tolerance = 1e-15)) # e xactly equal typically[] [1681] Underfull \hbox (badness 6859) in paragraph at lines 22225--22232 [][][]\T1/pcr/m/n/10 predict.glm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 p redict.lm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.loess[][][][]\T1 /ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.nls[][][][]\T1/ptm/m/n/10 , [][][]\T 1/pcr/m/n/10 predict.poly[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 22236--22242 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/pcr/m/n/10 predict.ar[ ][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/pcr/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1682] [1683] [1684] [1685] [1686] Overfull \hbox (54.78088pt too wide) in paragraph at lines 22524--22524 [] \T1/pcr/m/n/10 rankdeficient = c("warnif", "simple", "non-estim", "N A", "NAwarn"),[] Underfull \hbox (badness 10000) in paragraph at lines 22550--22553 []\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string spec-i-fy-ing what should hap-pen in the Underfull \hbox (badness 10000) in paragraph at lines 22550--22553 \T1/ptm/m/n/10 case of a rank de-fi-cient model, i.e., when []\T1/pcr/m/n/10 ob ject$rank < Underfull \hbox (badness 5832) in paragraph at lines 22555--22560 \T1/ptm/m/n/10 cases, i.e., vec-tors not in the same pre-dic-tor sub-space as t he Underfull \hbox (badness 8151) in paragraph at lines 22555--22560 \T1/ptm/m/n/10 orig-i-nal data (with tol-er-ance []\T1/pcr/m/n/10 tol[]\T1/ptm/ m/n/10 ). In that case, the non- Underfull \hbox (badness 1184) in paragraph at lines 22555--22560 \T1/ptm/m/n/10 estimable in-dices are also re-turned as at-tribute []\T1/pcr/m/ n/10 "non-estim" []\T1/ptm/m/n/10 (see [1687] [1688] [1689] [1690] [1691] [1692] [1693] [1694] Overfull \hbox (48.78088pt too wide) in paragraph at lines 23023--23023 [] \T1/pcr/m/n/10 subset = rep_len(TRUE, nrow(as.matrix(x))), fix_sign = TRUE, ...)[] [1695] [1696] [1697] [1698] Overfull \hbox (0.78088pt too wide) in paragraph at lines 23307--23307 [] \T1/pcr/m/n/10 has.Pvalue = nc >= 4L && length(cn <- colnames(x )) &&[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 23308--23308 [] \T1/pcr/m/n/10 substr(cn[nc], 1L, 3L) %in% c("Pr(" , "p-v"),[] [1699] [1700] [1701] [1702] [1703] [1704] [1705] Underfull \hbox (badness 1337) in paragraph at lines 23712--23718 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1706] [1707] [1708] [1709] [1710] Overfull \hbox (15.18042pt too wide) in paragraph at lines 24024--24024 []\T1/pcr/m/n/9 with(d, qqplot(Female, Male, pch = 19, xlim = c(-31, 31), ylim = c(-31, 31),[] [1711] [1712] [1713] [1714] Underfull \hbox (badness 10000) in paragraph at lines 24356--24358 []\T1/ptm/m/n/10 Wicklin, R. (2017) Sam-ple quan-tiles: A com-par-i-son of 9 de f-i-ni-tions; Underfull \hbox (badness 10000) in paragraph at lines 24356--24358 \T1/ptm/m/n/10 SAS Blog. [][]$\T1/pcr/m/n/10 https : / / blogs . sas . com / co ntent / iml / 2017 / 05 / 24 / Underfull \hbox (badness 10000) in paragraph at lines 24359--24360 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . or g / wiki / Quantile # Estimating _ [1715] [1716] Overfull \hbox (48.78088pt too wide) in paragraph at lines 24470--24470 [] \T1/pcr/m/n/10 method = c("non.compact", "row.compact", "col.compact" , "compact"),[] [1717] Underfull \hbox (badness 1028) in paragraph at lines 24528--24531 []\T1/ptm/m/n/10 further ar-gu-ments to be passed to or from meth-ods; for []\T 1/pcr/m/n/10 write() []\T1/ptm/m/n/10 and [1718] [1719] Underfull \hbox (badness 10000) in paragraph at lines 24643--24646 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by [1720] Underfull \hbox (badness 7099) in paragraph at lines 24698--24700 []\T1/ptm/m/n/10 This, as [][][]\T1/pcr/m/n/10 reorder[][][]()[]\T1/ptm/m/n/10 , is a spe-cial case of sim-ply call-ing [][][]\T1/pcr/m/n/10 factor[][][](x, l evels = [1721] Underfull \hbox (badness 7099) in paragraph at lines 24762--24764 []\T1/ptm/m/n/10 This, as [][][]\T1/pcr/m/n/10 relevel[][][]()[]\T1/ptm/m/n/10 , is a spe-cial case of sim-ply call-ing [][][]\T1/pcr/m/n/10 factor[][][](x, l evels = Overfull \hbox (31.3804pt too wide) in paragraph at lines 24797--24797 []\T1/pcr/m/n/9 bymedianR <- with(InsectSprays, reorder(spray, count, median, decreasing=TRUE))[] [1722] [1723] Overfull \hbox (9.78043pt too wide) in paragraph at lines 24873--24873 []\T1/pcr/m/n/9 plot(reorder(dd, 10:1, agglo.FUN = mean), main = "reorder(dd, 10:1, mean)")[] [1724] [1725] Overfull \hbox (0.78088pt too wide) in paragraph at lines 24990--24990 []\T1/pcr/m/n/10 # varying = ___, # list / matrix / vector (use with care)[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 24991--24991 []\T1/pcr/m/n/10 # v.names = ___, # vector of variable names in long format[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 24992--24992 []\T1/pcr/m/n/10 # timevar, times, # name / values of constructed time variable[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 24993--24993 []\T1/pcr/m/n/10 # idvar, ids) # name / values of constructed id v ariable[] [1726] [1727] Underfull \hbox (badness 10000) in paragraph at lines 25150--25155 [][][]\T1/pcr/m/n/10 stack[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 aperm[] [][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 relist[][][] []\T1/ptm/m/n/10 for r e-shap-ing the re-sult of [][][]\T1/pcr/m/n/10 unlist[][][][]\T1/ptm/m/n/10 . [ ][][]\T1/pcr/m/n/10 xtabs[][][] []\T1/ptm/m/n/10 and Underfull \hbox (badness 2495) in paragraph at lines 25150--25155 [][][]\T1/pcr/m/n/10 as.data.frame.table[][][] []\T1/ptm/m/n/10 for cre-at-ing con-tin-gency ta-bles and con-vert-ing them back to Overfull \hbox (15.18042pt too wide) in paragraph at lines 25163--25163 []\T1/pcr/m/n/9 ## long to wide (direction = "wide") requires idvar and timeva r at a minimum[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 25164--25164 []\T1/pcr/m/n/9 reshape(Indometh, direction = "wide", idvar = "Subject", timev ar = "time")[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 25183--25183 []\T1/pcr/m/n/9 reshape(df, timevar = "visit", idvar = "id", direction = "wide ", v.names = "x")[] [1728] [1729] Overfull \hbox (60.78088pt too wide) in paragraph at lines 25288--25288 [] \T1/pcr/m/n/10 na.action = c("+Big_alternate", "-Big_alternate", "na. omit", "fail"),[] Underfull \hbox (badness 1033) in paragraph at lines 25331--25337 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1730] Underfull \hbox (badness 10000) in paragraph at lines 25352--25355 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/pcr/m/n/10 y = r unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/pcr/m/n/10 y[j] = [1731] Overfull \hbox (9.78043pt too wide) in paragraph at lines 25430--25430 []\T1/pcr/m/n/9 plot(myNHT, type = "b", ylim = c(48, 60), main = "Running Medi ans Example")[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 25456--25456 []\T1/pcr/m/n/9 ## An example with initial NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s - used to fail badly (notably for "Turlach"):[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 25468--25468 []\T1/pcr/m/n/9 matplot(y = cbind(x15, rT15), type = "b", ylim = c(1,9), pch=1 :5, xlab = NA,[] [1732] [1733] [1734] [1735] [1736] [1737] Underfull \vbox (badness 10000) has occurred while \output is active [1738] [1739] Underfull \hbox (badness 6268) in paragraph at lines 25927--25932 [][][]\T1/pcr/m/n/10 SSasympOrig[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 S Sbiexp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSfol[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSfpl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSgo mpertz[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSlogis[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/pcr/m/n/10 SSmicmen[][][][]\T1/ptm/m/n/10 , [1740] [1741] [1742] Underfull \hbox (badness 1867) in paragraph at lines 26137--26139 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 26153--26157 []\T1/ptm/m/n/10 where []\T1/pcr/m/n/10 NN <- [][]nobs[][][](object, use.fallba ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 PP Underfull \hbox (badness 10000) in paragraph at lines 26153--26157 \T1/pcr/m/n/10 <- sum(!is.na([][]coef[][][](object))) []\T1/ptm/m/n/10 -- where in older \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions this was [1743] Overfull \hbox (20.58041pt too wide) in paragraph at lines 26195--26195 []\T1/pcr/m/n/9 sigma(lm1) # ~= 7.165 = "Residual standard error" printed fr om summary(lm1)[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 26202--26202 []\T1/pcr/m/n/9 stopifnot(all.equal(sigma(fm.DN1), summary(fm.DN1)$sigma, tole rance=1e-15))[] [1744] [1745] [1746] Underfull \hbox (badness 2495) in paragraph at lines 26384--26393 []\T1/ptm/m/n/10 For an in-verse gaus-sian GLM the model as-sumed is $\OML/cmm/ m/it/10 IG\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 ^^V[]; ^^Uw[]\OT1/cmr/m/n/10 )$ \T1 /ptm/m/n/10 (see [][]$\T1/pcr/m/n/10 https : / / en . [1747] [1748] Underfull \hbox (badness 2197) in paragraph at lines 26530--26533 []\T1/pcr/m/n/10 psmirnov []\T1/ptm/m/n/10 gives the dis-tri-bu-tion func-tion, []\T1/pcr/m/n/10 qsmirnov []\T1/ptm/m/n/10 gives the quan-tile func-tion, and Overfull \hbox (24.78088pt too wide) in paragraph at lines 26550--26550 [] \T1/pcr/m/n/10 twiceit = FALSE, endrule = c("Tukey", "copy"), do.ends = FALSE)[] Underfull \hbox (badness 1412) in paragraph at lines 26557--26559 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing the kind of smoother re-qui red; de-faults to [1749] [1750] Overfull \hbox (25.98041pt too wide) in paragraph at lines 26642--26642 []\T1/pcr/m/n/9 matlines(cbind(smooth(x, "3R"), smooth(x, "S"), smooth(x, "3RS S"), smooth(x)))[] Overfull \hbox (84.78088pt too wide) in paragraph at lines 26667--26667 []\T1/pcr/m/n/10 smooth.spline(x, y = NULL, w = NULL, df, spar = NULL, lambda = NULL, cv = FALSE, Overfull \hbox (66.78088pt too wide) in paragraph at lines 26670--26670 [] \T1/pcr/m/n/10 control.spar = list(), tol = 1e-6 * IQR(x), kee p.stuff = FALSE)[] [1751] [1752] [1753] Overfull \hbox (6.78088pt too wide) in paragraph at lines 26895--26895 [] \T1/pcr/m/n/10 nx <- length(x) - sum(duplicated( round((x - mean(x)) / t ol) ))[] Underfull \hbox (badness 2547) in paragraph at lines 26899--26905 []\T1/ptm/m/n/10 The de-fault []\T1/pcr/m/n/10 all.knots = FALSE []\T1/ptm/m/n/ 10 and []\T1/pcr/m/n/10 nknots = .nknots.smspl[]\T1/ptm/m/n/10 , en-tails us-in g only [1754] Overfull \hbox (4.38043pt too wide) in paragraph at lines 26946--26946 []\T1/pcr/m/n/9 plot(dist ~ speed, data = cars, main = "data(cars) & smoothi ng splines")[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 26967--26967 []\T1/pcr/m/n/9 with(cars.spl$fit, min + range * knot[-c(1:3, nk+1 +1:3)]) # = = unique(cars$speed)[] [1755] [1756] [1757] Overfull \hbox (0.78088pt too wide) in paragraph at lines 27159--27159 []\T1/pcr/m/n/10 spec.ar(x, n.freq, order = NULL, plot = TRUE, na.action = na. fail, [1758] [1759] [1760] [1761] Underfull \hbox (badness 10000) in paragraph at lines 27424--27429 \T1/ptm/m/n/10 This makes the spec-tral den-sity a den-sity over the range []\T 1/pcr/m/n/10 (-frequency(x)/2, [1762] [1763] Overfull \hbox (36.78088pt too wide) in paragraph at lines 27538--27538 [] \T1/pcr/m/n/10 method = c("fmm", "periodic", "natural", "monoH.FC" , "hyman"),[] [1764] [1765] Overfull \hbox (69.18036pt too wide) in paragraph at lines 27720--27720 []\T1/pcr/m/n/9 set.seed(8); x <- sort(round(rnorm(30), 1)); y <- round(sin(pi * x) + rnorm(30)/10, 3)[] [1766] Overfull \hbox (52.98038pt too wide) in paragraph at lines 27726--27726 []\T1/pcr/m/n/9 plot(x, y, main = "spline(x,y, ties=list(\"ordered\", mean)) for when x has ties")[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 27735--27735 []\T1/pcr/m/n/9 curve(splinefun(x., y., method = "monoH.FC")(x), add = TRUE, c ol = 3, n = 1001)[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 27736--27736 []\T1/pcr/m/n/9 curve(splinefun(x., y., method = "hyman") (x), add = TRUE, c ol = 4, n = 1001)[] [1767] Underfull \hbox (badness 2922) in paragraph at lines 27805--27810 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion Overfull \hbox (9.78043pt too wide) in paragraph at lines 27842--27842 [] \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(0,5.2), xlim = c(-.3, 5),[] [1768] Overfull \hbox (42.18039pt too wide) in paragraph at lines 27845--27845 [] \T1/pcr/m/n/9 {f[phi](x) == phi[1] + (phi[2]-phi[1])*~e^ {-e^{phi[3]}*~x}}))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 27854--27854 [] \T1/pcr/m/n/9 c(0 , 1 ), 1, length = 0.08, angle = 25); text(0. 5, 1, quote(1))[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 27855--27855 [] \T1/pcr/m/n/9 y0 <- 1 + 4*exp(-3/4) ; t.5 <- log(2) / exp(-3/4) ; AR2 <- 3 # (Asym + R0)/2[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 27859--27859 [] \T1/pcr/m/n/9 axis(2, at = c(1,AR2,5), labels= expression(phi[2], frac(phi [1]+phi[2],2), phi[1]),[] [1769] Underfull \hbox (badness 3240) in paragraph at lines 27913--27916 [][][]\T1/pcr/m/n/10 nls[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 selfStart [][][][]\T1/ptm/m/n/10 ; []\T1/pcr/m/n/10 example(SSasympOff) []\T1/ptm/m/n/10 gives graph show-ing the []\T1/pcr/m/n/10 SSasympOff Overfull \hbox (36.7804pt too wide) in paragraph at lines 27934--27934 [] \T1/pcr/m/n/9 stopifnot( all.equal(yy, SSasympOff(xx, Asym = 5, lrc = log( 0.4), c0 = 3/4)) )[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 27937--27937 [] \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(-.5,6), xlim = c(-1, 8),[] [1770] Overfull \hbox (4.38043pt too wide) in paragraph at lines 28020--28020 [] \T1/pcr/m/n/9 stopifnot( all.equal(yy, SSasympOrig(xx, Asym = 5, lrc = log (log(2)))) )[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 28024--28024 [] \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(0,5), xlim = c(-1/4, 5),[] [1771] Overfull \hbox (58.38037pt too wide) in paragraph at lines 28034--28034 [] \T1/pcr/m/n/9 axis(2, at = 5*c(1/2,1), labels= expression(frac(phi[1],2), phi[1]), pos=0, las=1)[] Overfull \hbox (106.98032pt too wide) in paragraph at lines 28039--28039 [] \T1/pcr/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] Underfull \hbox (badness 2922) in paragraph at lines 28075--28081 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1772] Overfull \hbox (4.38043pt too wide) in paragraph at lines 28097--28097 []\T1/pcr/m/n/9 print(getInitial(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), dat a = Indo.1),[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 28113--28113 [] \T1/pcr/m/n/9 legend("topright", c("y1+y2", "y1 = 3.5 * exp(-4*x)", "y2 = 1.5 * exp(-x)"),[] Overfull \hbox (74.58035pt too wide) in paragraph at lines 28127--28127 []\T1/pcr/m/n/9 ## Fails by default (scaleOffset=0) on most platforms {also af ter increasing maxiter !}[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 28129--28129 [] \T1/pcr/m/n/9 nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d atN, trace=TRUE)[] Overfull \hbox (128.58029pt too wide) in paragraph at lines 28135--28135 [] \T1/pcr/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol= 1e-11, nDcentral=TRUE), trace=TRUE)[] [1773] [1774] Overfull \hbox (30.78088pt too wide) in paragraph at lines 28246--28246 []\T1/pcr/m/n/10 Dose * exp(lKe+lKa-lCl) * (exp(-exp(lKe)*input) - exp(-exp(lK a)*input)) [1775] Underfull \hbox (badness 2922) in paragraph at lines 28308--28313 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1776] Overfull \hbox (69.18036pt too wide) in paragraph at lines 28346--28346 [] \T1/pcr/m/n/9 mtext(quote(list(phi[1] == "A", phi[2] == "B", phi[3] == "xm id", phi[4] == "scal")))[] Underfull \hbox (badness 2922) in paragraph at lines 28395--28400 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1777] Overfull \hbox (4.38043pt too wide) in paragraph at lines 28426--28426 []\T1/pcr/m/n/9 lines(x, do.call(SSgompertz, c(list(x=x), coef(fm1))), col = " red", lwd=2)[] Underfull \hbox (badness 2922) in paragraph at lines 28460--28465 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1778] Overfull \hbox (25.98041pt too wide) in paragraph at lines 28485--28485 []\T1/pcr/m/n/9 ## Initial values are in fact the converged one here, "Number of iter...: 0" :[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 28489--28489 []\T1/pcr/m/n/9 fm2 <- update(fm1, control=nls.control(tol = 1e-9, warnOnly=TR UE), trace = TRUE)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 28509--28509 [] \T1/pcr/m/n/9 mtext(quote(list(phi[1] == "Asym", phi[2] == "xmid", phi[3] == "scal")))[] [1779] Overfull \hbox (20.58041pt too wide) in paragraph at lines 28519--28519 [] \T1/pcr/m/n/9 segments(c(2,2.6,2.6), c(0, 2.5,3.5), # NB. SSlogis(x = xmid = 2) = 2.5[] Underfull \hbox (badness 2922) in paragraph at lines 28554--28559 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion Overfull \hbox (4.38043pt too wide) in paragraph at lines 28576--28576 []\T1/pcr/m/n/9 print(getInitial(rate ~ SSmicmen(conc, Vm, K), data = PurTrt), digits = 3)[] [1780] Overfull \hbox (15.18042pt too wide) in paragraph at lines 28594--28594 [] \T1/pcr/m/n/9 ann = FALSE, axes = FALSE, main = "Parameters in the SS micmen model")[] [1781] Underfull \hbox (badness 6493) in paragraph at lines 28646--28651 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 x[]\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion Overfull \hbox (4.38043pt too wide) in paragraph at lines 28674--28674 []\T1/pcr/m/n/9 getInitial(weight ~ SSweibull(Time, Asym, Drop, lrc, pwr), dat a = Chick.6)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 28676--28676 []\T1/pcr/m/n/9 fm1 <- nls(weight ~ SSweibull(Time, Asym, Drop, lrc, pwr), dat a = Chick.6)[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 28680--28680 []\T1/pcr/m/n/9 plot(weight ~ Time, Chick.6, xlim = c(0, 21), main = "SSweibul l() fit to Chick.6")[] Overfull \hbox (69.18036pt too wide) in paragraph at lines 28683--28683 []\T1/pcr/m/n/9 As <- coef(fm1)[["Asym"]]; abline(v = 0, h = c(As, As - coef(f m1)[["Drop"]]), lty = 3)[] [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] Underfull \hbox (badness 3396) in paragraph at lines 29564--29566 []\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.glm"[]\T1/ptm/m/ n/10 , usu-ally, a re-sult of a call to [1796] [1797] [1798] Underfull \hbox (badness 2237) in paragraph at lines 29743--29745 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /pcr/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1799] [1800] Underfull \hbox (badness 2591) in paragraph at lines 29907--29909 []\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.nls"[]\T1/ptm/m/ n/10 , usu-ally the re-sult of a call to [1801] Underfull \hbox (badness 2237) in paragraph at lines 29953--29956 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /pcr/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1802] Overfull \hbox (48.78088pt too wide) in paragraph at lines 30026--30026 []\T1/pcr/m/n/10 supsmu(x, y, wt =, span = "cv", periodic = FALSE, bass = 0, t race = FALSE) [1803] [1804] Underfull \hbox (badness 3407) in paragraph at lines 30135--30139 []\T1/ptm/m/n/10 character vec-tor, one shorter than (the \T1/ptm/m/it/10 aug-m ented\T1/ptm/m/n/10 , see []\T1/pcr/m/n/10 corr []\T1/ptm/m/n/10 be-low) [1805] Overfull \hbox (47.58038pt too wide) in paragraph at lines 30205--30205 []\T1/pcr/m/n/9 symnum(ii, cutpoints = 2*(0:4), symbols = c(".", "-", "+", "$ "), show.max = TRUE)[] [1806] Underfull \hbox (badness 1337) in paragraph at lines 30268--30272 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1807] [1808] [1809] [1810] Overfull \hbox (9.78043pt too wide) in paragraph at lines 30547--30547 []\T1/pcr/m/n/9 persp(tt, ncp, ptn, zlim = 0:1, r = 2, phi = 20, theta = 200, main = t.tit,[] [1811] Overfull \hbox (0.78088pt too wide) in paragraph at lines 30590--30590 [] \T1/pcr/m/n/10 use.factor.levels = TRUE, smooth = NULL, ylim = "com mon",[] Underfull \hbox (badness 1616) in paragraph at lines 30616--30619 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1812] Overfull \hbox (20.58041pt too wide) in paragraph at lines 30695--30695 []\T1/pcr/m/n/9 termplot(model, partial.resid = TRUE, smooth = panel.smooth, s pan.smth = 1/4)[] [1813] Underfull \hbox (badness 10000) in paragraph at lines 30733--30738 []\T1/ptm/m/n/10 There are meth-ods for classes []\T1/pcr/m/n/10 "aovlist"[]\T1 /ptm/m/n/10 , []\T1/pcr/m/n/10 "terms"[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 " formula" []\T1/ptm/m/n/10 (see [1814] Overfull \hbox (0.78088pt too wide) in paragraph at lines 30773--30773 []\T1/pcr/m/n/10 terms(x, specials = NULL, abb = NULL, data = NULL, neg.out = TRUE,[] [1815] [1816] [1817] Overfull \hbox (12.78088pt too wide) in paragraph at lines 31007--31007 []\T1/pcr/m/n/10 toeplitz2(x, nrow = length(x) +1 - ncol, ncol = length(x) +1 - nrow)[] Underfull \hbox (badness 2913) in paragraph at lines 31013--31017 []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 toeplitz(x, *)[]\T1/ptm/m/n/10 : the firs t col-umn of the Toeplitz ma-trix; for [1818] Overfull \hbox (36.7804pt too wide) in paragraph at lines 31050--31050 []\T1/pcr/m/n/9 # Matrix of character (could also have logical, raw, complex . .) {also warning}:[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 31063--31063 [] \T1/pcr/m/n/9 colnames(W) <- paste0(",", if(n <= 9) 1:n else c(1:9, lette rs[seq_len(n-9)]))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 31074--31074 []\T1/pcr/m/n/9 y.hat <- W. %*% y # y.hat := smoothed(y) ("mass preserving" -> longer than y)[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 31076--31076 []\T1/pcr/m/n/9 plot(x,y, type="b", xlim=c(1,m)); curve(f(x), 1,n, col="gray", lty=2, add=TRUE)[] [1819] Overfull \hbox (30.78088pt too wide) in paragraph at lines 31108--31108 [] \T1/pcr/m/n/10 class = if(nseries > 1) c("mts", "ts", "matrix", "array") else "ts",[] [1820] Underfull \hbox (badness 1655) in paragraph at lines 31186--31189 []\T1/pcr/m/n/10 is.mts(x) []\T1/ptm/m/n/10 tests if an ob-ject []\T1/pcr/m/n/1 0 x []\T1/ptm/m/n/10 is a mul-ti-vari-ate time se-ries, i.e., ful-fills []\T1/p cr/m/n/10 is.ts(x)[]\T1/ptm/m/n/10 , Overfull \hbox (20.58041pt too wide) in paragraph at lines 31224--31224 []\T1/pcr/m/n/9 utils:: methods(class = "ts") # all functions with methods ava ilable for "ts"[] [1821] [1822] [1823] [1824] [1825] Overfull \hbox (12.78088pt too wide) in paragraph at lines 31558--31558 []\T1/pcr/m/n/10 ptukey(q, nmeans, df, nranges = 1, lower.tail = TRUE, log.p = FALSE) [1826] Overfull \hbox (12.78088pt too wide) in paragraph at lines 31559--31559 []\T1/pcr/m/n/10 qtukey(p, nmeans, df, nranges = 1, lower.tail = TRUE, log.p = FALSE)[] [1827] [1828] [1829] [1830] Overfull \hbox (30.78088pt too wide) in paragraph at lines 31859--31859 [] \T1/pcr/m/n/10 extendInt = c("no", "yes", "downX", "upX"), check.con v = FALSE,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 31860--31860 [] \T1/pcr/m/n/10 tol = .Machine$double.eps^0.25, maxiter = 1000, trace = 0)[] [1831] [1832] Overfull \hbox (31.3804pt too wide) in paragraph at lines 31989--31989 []\T1/pcr/m/n/9 ##--- uniroot() with new interval extension + checking feature s: --------------[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 31998--31998 []\T1/pcr/m/n/9 ## where as \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 extendInt="yes"\TS1 /pcr/m/n/9 ' \T1/pcr/m/n/9 simply first enlarges the search interval:[] [1833] [1834] [1835] [1836] Underfull \hbox (badness 1337) in paragraph at lines 32215--32219 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1837] [1838] [1839] [1840] [1841] [1842] [1843] [1844] Underfull \hbox (badness 1337) in paragraph at lines 32743--32747 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1845] [1846] [1847] Overfull \hbox (117.7803pt too wide) in paragraph at lines 32951--32951 []\T1/pcr/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] Overfull \hbox (74.58035pt too wide) in paragraph at lines 32953--32953 []\T1/pcr/m/n/9 wilcox.test((4:2)/10, (3:1)/10, paired=TRUE, digits.rank = 9) # same ties as (4:2, 3:1)[] [1848] [1849] Overfull \hbox (138.78088pt too wide) in paragraph at lines 33112--33112 [] \T1/pcr/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps = getOption("ts.eps"), ...)[] [1850] Overfull \hbox (0.78088pt too wide) in paragraph at lines 33197--33197 []\T1/pcr/m/n/10 xtabs(formula = ~., data = parent.frame(), subset, sparse = F ALSE, Overfull \hbox (0.78088pt too wide) in paragraph at lines 33199--33199 [] \T1/pcr/m/n/10 exclude = if(!addNA) c(NA, NaN), drop.unused.levels = F ALSE)[] [1851] [1852] [1853] [1854]) (./stats4-pkg.tex Chapter 11. [1855] [1856] [1857] Overfull \hbox (15.18042pt too wide) in paragraph at lines 224--224 [] \T1/pcr/m/n/9 -sum(stats::dpois(y, lambda = exp(lymax)/(1+x/exp(lxhalf)) , log = TRUE))[] Underfull \vbox (badness 10000) has occurred while \output is active [1858] Overfull \hbox (9.78043pt too wide) in paragraph at lines 278--278 []\T1/pcr/m/n/9 ## Boundary case: This works, but fails if limits are set clos er to 0 and 1[] [1859] [1860] [1861] [1862]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1863] [1864] [1865]) (./tcltk-pkg.tex [1866] Chapter 12. [1867] [1868] [1869] [1870] [1871] Overfull \hbox (36.7804pt too wide) in paragraph at lines 372--372 []\T1/pcr/m/n/9 ls(envir = .TkRoot$env, all.names = TRUE) # .Tcl.args put a ca llback ref in here[] [1872] [1873] Underfull \vbox (badness 10000) has occurred while \output is active [1874] Underfull \hbox (badness 1292) in paragraph at lines 683--690 []\T1/pcr/m/n/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-i ng any Tk or Tcl com-mand by sim-ply run-ning Underfull \vbox (badness 1603) has occurred while \output is active [1875] [1876] [1877] [1878] [1879] Underfull \vbox (badness 10000) has occurred while \output is active [1880] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1096--1096 []\T1/pcr/m/n/9 eval.txt <- function() eval(str2lang(tclvalue(tkget(txt.w, "0. 0", "end"))))[] [1881] [1882] [1883] [1884] [1885] Underfull \hbox (badness 1189) in paragraph at lines 1424--1427 [][][]\T1/pcr/m/n/10 select.list[][][] []\T1/ptm/m/n/10 (a text ver-sion ex-cep t on Win-dows and the ma-cOS GUI), [][][]\T1/pcr/m/n/10 menu[][][] []\T1/ptm/m/ n/10 (whose [1886]) (./tools-pkg.tex Chapter 13. [1887] Overfull \hbox (9.78043pt too wide) in paragraph at lines 69--69 []\T1/pcr/m/n/9 ## is used for simple print methods in R, and as prototype for new methods.[] [1888] Underfull \hbox (badness 1253) in paragraph at lines 167--170 []\T1/pcr/m/n/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing will be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1889] Overfull \hbox (4.38043pt too wide) in paragraph at lines 218--218 []\T1/pcr/m/n/9 assertCondition(ff(), "error", "warning") # ok (quietly, catch ing warning)[] [1890] Underfull \hbox (badness 5147) in paragraph at lines 326--339 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 Underfull \hbox (badness 4792) in paragraph at lines 326--339 \T1/ptm/m/n/10 types of bib-li-o-graphic en-try sup-ported by [][][]\T1/pcr/m/n /10 bibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou- Underfull \hbox (badness 2237) in paragraph at lines 326--339 \T1/ptm/m/n/10 tines de-scribed be-low. The for-mer must be named []\T1/pcr/m/n /10 formatArticle[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 formatBook[]\T1/ptm/m/n/10 , [1891] [1892] Overfull \hbox (42.78088pt too wide) in paragraph at lines 411--411 []\T1/pcr/m/n/10 buildVignette(file, dir = ".", weave = TRUE, latex = TRUE, ta ngle = TRUE, Underfull \hbox (badness 2460) in paragraph at lines 430--432 []\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gin e to use. Over-rides any [1893] Underfull \hbox (badness 1142) in paragraph at lines 502--506 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1894] [1895] [1896] [1897] [1898] [1899] [1900] Underfull \hbox (badness 1024) in paragraph at lines 913--920 \T1/ptm/m/n/10 by \T1/pcr/m/n/10 \donttest\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \dont diff \T1/ptm/m/n/10 or \T1/pcr/m/n/10 \dontshow\T1/ptm/m/n/10 , and \T1/pcr/m/n /10 \title \T1/ptm/m/n/10 re-placed by \T1/pcr/m/n/10 \section \T1/ptm/m/n/10 o r [1901] Overfull \hbox (0.78088pt too wide) in paragraph at lines 985--985 []\T1/pcr/m/n/10 resaveRdaFiles(paths, compress = c("auto", "gzip", "bzip2", " xz"),[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 1040--1040 []\T1/pcr/m/n/9 bad <- is.na(res$ASCII) | res$ASCII | (res$size > 1e4 & res$co mpress == "none")[] [1902] [1903] [1904] Overfull \hbox (12.78088pt too wide) in paragraph at lines 1210--1210 [] \T1/pcr/m/n/10 outputs = FALSE, sources = FALS E, ...)[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 1211--1211 []\T1/pcr/m/n/10 check_packages_in_dir_details(dir, logs = NULL, drop_ok = TRU E, ...)[] [1905] Underfull \hbox (badness 1014) in paragraph at lines 1258--1260 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1264--1266 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [1906] Underfull \hbox (badness 10000) in paragraph at lines 1301--1304 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us- Underfull \hbox (badness 10000) in paragraph at lines 1301--1304 \T1/ptm/m/n/10 ing []\T1/pcr/m/n/10 summarize_check_packages_in_dir_results []\ T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 1309--1312 []\T1/pcr/m/n/10 check_packages_in_dir []\T1/ptm/m/n/10 re-turns an ob-ject in- her-it-ing from class [1907] [1908] Underfull \hbox (badness 10000) in paragraph at lines 1456--1459 []\T1/pcr/m/n/10 codocClasses []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 codocData [ ]\T1/ptm/m/n/10 re-turn ob-jects of class []\T1/pcr/m/n/10 "codocClasses" []\T1 /ptm/m/n/10 and [1909] [1910] Underfull \hbox (badness 4647) in paragraph at lines 1639--1644 []\T1/pcr/m/n/10 CRAN_package_db() []\T1/ptm/m/n/10 re-turns a data frame with char-ac-ter columns con-tain-ing most Underfull \hbox (badness 7869) in paragraph at lines 1639--1644 \T1/ptm/m/n/10 `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' meta-data for the cu r-rent pack-ages in the CRAN pack-age repos-i- Underfull \hbox (badness 1681) in paragraph at lines 1639--1644 \T1/ptm/m/n/10 tory, in-clud-ing in par-tic-u-lar the De-scrip-tion and Main-ta iner in-for-ma-tion not pro-vided by [1911] Underfull \hbox (badness 10000) in paragraph at lines 1716--1726 []\T1/ptm/m/n/10 Functions []\T1/pcr/m/n/10 CRAN_current_db()[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 CRAN_aliases_db()[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 CRAN_rdx refs_db()[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1716--1726 []\T1/pcr/m/n/10 CRAN_authors_db() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 CRAN_a rchive_db() []\T1/ptm/m/n/10 (also used by []\T1/pcr/m/n/10 R CMD check[]\T1/pt m/m/n/10 ) Underfull \hbox (badness 4120) in paragraph at lines 1716--1726 \T1/ptm/m/n/10 use []\T1/pcr/m/n/10 R_CRAN_SRC []\T1/ptm/m/n/10 rather than []\ T1/pcr/m/n/10 R_CRAN_WEB[]\T1/ptm/m/n/10 . The mir-ror to be used is re-ported by [1912] [1913] Overfull \hbox (24.78088pt too wide) in paragraph at lines 1840--1840 [] \T1/pcr/m/n/10 utils::installed.packages(lib.loc, fields = "En hances"))[] Underfull \hbox (badness 7981) in paragraph at lines 1847--1855 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of Underfull \hbox (badness 10000) in paragraph at lines 1847--1855 []\T1/pcr/m/n/10 c("Depends", "Imports", "LinkingTo", "Suggests", Underfull \hbox (badness 1558) in paragraph at lines 1847--1855 \T1/pcr/m/n/10 "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string []\T1/pcr/m/n/1 0 "all" []\T1/ptm/m/n/10 is short-hand for that vec-tor, [1914] [1915] [1916] [1917] [1918]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.2102 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ig nored \relax l.2103 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1919] [1920] [1921] [1922] [1923] Underfull \hbox (badness 1142) in paragraph at lines 2439--2445 []\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 loadPkgRdMacros []\T1/ptm/m/n/10 func-tio n first looks for an []\T1/pcr/m/n/10 "RdMacros" []\T1/ptm/m/n/10 en-try in the pack-age [1924] Underfull \hbox (badness 2359) in paragraph at lines 2503--2510 []\T1/ptm/m/n/10 Package main-tain-ers can use these func-tions to em-ploy user and site spe-cific com-pi-la- Underfull \hbox (badness 1102) in paragraph at lines 2503--2510 \T1/ptm/m/n/10 tion set-tings also for com-pi-la-tions not us-ing \T1/phv/m/n/1 0 R\T1/ptm/m/n/10 's mech-a-nisms (in par-tic-u-lar, cus-tom com- Underfull \hbox (badness 4168) in paragraph at lines 2503--2510 \T1/ptm/m/n/10 pi-la-tions in sub-di-rec-to-ries of `\T1/pcr/m/n/10 src\T1/ptm/ m/n/10 '), e.g., by adding con-fig-ure code call-ing \T1/phv/m/n/10 R \T1/ptm/m /n/10 with [1925] Underfull \hbox (badness 1342) in paragraph at lines 2555--2561 \T1/ptm/m/n/10 This al-lows e.g. the trans-la-tions shipped in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.x.y to be up-dated to those cur-rently in Underfull \hbox (badness 10000) in paragraph at lines 2580--2587 []\T1/pcr/m/n/10 matchConcordance []\T1/ptm/m/n/10 con-verts from out-put lo-ca -tions to source lo-ca-tions. The [1926] Underfull \hbox (badness 1259) in paragraph at lines 2644--2647 []\T1/ptm/m/n/10 The de-fault method of []\T1/pcr/m/n/10 as.Rconcordance []\T1/ ptm/m/n/10 searches for strings match-ing the pat-tern of Underfull \hbox (badness 1648) in paragraph at lines 2648--2654 []\T1/pcr/m/n/10 followConcordance []\T1/ptm/m/n/10 is used when a file is tran s-formed more than once. The first Underfull \hbox (badness 1708) in paragraph at lines 2648--2654 \T1/ptm/m/n/10 trans-for-ma-tion records a con-cor-dance in the file which is r ead as []\T1/pcr/m/n/10 prevConcordance[]\T1/ptm/m/n/10 . [1927] [1928] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2776--2776 []\T1/pcr/m/n/10 package_dependencies(packages = NULL, db = NULL, which = "str ong", Underfull \hbox (badness 7981) in paragraph at lines 2791--2799 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of Underfull \hbox (badness 10000) in paragraph at lines 2791--2799 []\T1/pcr/m/n/10 c("Depends", "Imports", "LinkingTo", "Suggests", Underfull \hbox (badness 1558) in paragraph at lines 2791--2799 \T1/pcr/m/n/10 "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string []\T1/pcr/m/n/1 0 "all" []\T1/ptm/m/n/10 is short-hand for that vec-tor, Overfull \hbox (15.18042pt too wide) in paragraph at lines 2827--2827 []\T1/pcr/m/n/9 myPkgs <- c("MASS", "Matrix", "KernSmooth", "class", "cluster" , "codetools")[] [1929] Overfull \hbox (18.78088pt too wide) in paragraph at lines 2860--2860 [] \T1/pcr/m/n/10 align = TRUE, character_only = TRUE, include_declarations = TRUE)[] [1930] [1931] [1932] [1933] Overfull \hbox (0.78088pt too wide) in paragraph at lines 3158--3158 [] \T1/pcr/m/n/10 macros = file.path(R.home("share"), "Rd", "macros", "system. Rd"),[] [1934] Underfull \hbox (badness 2486) in paragraph at lines 3203--3211 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sion 3.2.0, User-d efined macros may be given in a sep-a-rate file us-ing [1935] Overfull \hbox (12.78088pt too wide) in paragraph at lines 3259--3259 [] \T1/pcr/m/n/10 stylesheet = file.path(R.home("doc"), "html", "R-nav .css"),[] Overfull \hbox (36.78088pt too wide) in paragraph at lines 3260--3260 [] \T1/pcr/m/n/10 hooks = list(pkg_href = function(pkg) sprintf("%s.ht ml", pkg)),[] Overfull \hbox (84.78088pt too wide) in paragraph at lines 3267--3267 [] \T1/pcr/m/n/10 mathjax_config = file.path(R.home("doc"), "html", "m athjax-config.js"),[] [1936] [1937] [1938] Overfull \hbox (0.78088pt too wide) in paragraph at lines 3527--3527 []\T1/pcr/m/n/10 checkDocFiles (package, dir, lib.loc = NULL, chkInternal = NULL) [1939] Overfull \hbox (0.78088pt too wide) in paragraph at lines 3531--3531 []\T1/pcr/m/n/10 checkRdContents (package, dir, lib.loc = NULL, chkInternal = NULL)[] [1940] [1941] [1942] Overfull \hbox (48.78088pt too wide) in paragraph at lines 3762--3762 [] \T1/pcr/m/n/10 fragment = FALSE, ..., writeEncoding = outputEncodin g != "UTF-8",[] [1943] Underfull \hbox (badness 1072) in paragraph at lines 3815--3817 []\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec- tor of links, as re-turned by [1944] [1945] [1946] [1947] [1948] Overfull \hbox (72.78088pt too wide) in paragraph at lines 4153--4153 [] \T1/pcr/m/n/10 macros = file.path(R.home("share"), "Rd", "macro s", "system.Rd"))[] Underfull \hbox (badness 5417) in paragraph at lines 4191--4201 []\T1/ptm/m/n/10 By de-fault, the tags \T1/pcr/m/n/10 \S3method\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \S4method\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \command\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \docType\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \email\T1/ptm/m/n/10 , [1949] [1950] [1951] [1952] [1953] Underfull \hbox (badness 4108) in paragraph at lines 4462--4469 []\T1/ptm/m/n/10 This func-tion starts the in-ter-nal HTTP server, which runs o n the loop-back in-ter-face [1954] Overfull \hbox (0.78088pt too wide) in paragraph at lines 4563--4563 [] \T1/pcr/m/n/10 types = c("examples", "tests", "vignett es"),[] [1955] Overfull \hbox (48.78088pt too wide) in paragraph at lines 4566--4566 []\T1/pcr/m/n/10 testInstalledBasic(scope = c("basic", "devel", "both", "inter net", "all"),[] Underfull \hbox (badness 10000) in paragraph at lines 4591--4593 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1956] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4650--4650 []\T1/pcr/m/n/9 (prio <- sapply(as.vector(pNms), packageDescription, fields = "Priority"))[] [1957] Underfull \hbox (badness 4954) in paragraph at lines 4715--4720 []\T1/ptm/m/n/10 On Unix-alikes, the de-fault op-tion for []\T1/pcr/m/n/10 texi 2dvi []\T1/ptm/m/n/10 is set from en-vi-ron-ment vari-able [1958] [1959] [1960] Overfull \hbox (20.58041pt too wide) in paragraph at lines 4917--4917 []\T1/pcr/m/n/9 toTitleCase("ensemble tool for predictions from species distri bution models")[] Overfull \hbox (128.58029pt too wide) in paragraph at lines 4921--4921 []\T1/pcr/m/n/9 toTitleCase("a small fox is jumping") # "a Small Fox is .." (the \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 a\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 may cha nge)% i.e. BUG[] Overfull \hbox (69.18036pt too wide) in paragraph at lines 4925--4925 []\T1/pcr/m/n/9 toTitleCase("asking -- \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 is a smal l fox jumping?\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ") # ".. -- Is a Small ..." (fi ne)[] [1961] [1962] Overfull \hbox (0.78088pt too wide) in paragraph at lines 5008--5008 [] \T1/pcr/m/n/10 "mac.binary", "win.binary"), verbose.level = as.integer(dry run),[] [1963] [1964] Underfull \hbox (badness 10000) in paragraph at lines 5192--5195 []\T1/ptm/m/n/10 optional char-ac-ter strings for the `[]\T1/pcr/m/n/10 Copyrig ht[]\T1/ptm/m/n/10 ' and [1965] Underfull \hbox (badness 6859) in paragraph at lines 5208--5213 []\T1/ptm/m/n/10 All ex-ist-ing files in di-rec-tory []\T1/pcr/m/n/10 po []\T1/ ptm/m/n/10 with names `\T1/pcr/m/n/10 R-\T1/ptm/m/sl/10 lang\T1/pcr/m/n/10 .po\ T1/ptm/m/n/10 ' are up-dated from Underfull \hbox (badness 1184) in paragraph at lines 5216--5222 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/pcr/m/n/10 po /\T1/ptm/m/sl/10 pkgname\T1/pcr/m/n/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. T he Underfull \hbox (badness 2941) in paragraph at lines 5216--5222 \T1/ptm/m/n/10 `\T1/pcr/m/n/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in t he pack-age are ex-am-ined to cre-ate a file [1966] Overfull \hbox (9.78043pt too wide) in paragraph at lines 5325--5325 []\T1/pcr/m/n/9 parse_URI_reference(c("foo://example.com:8042/over/there?name= ferret#nose",[] [1967] [1968] [1969] Underfull \hbox (badness 10000) in paragraph at lines 5521--5523 []\T1/ptm/m/n/10 the [][][]\T1/pcr/m/n/10 vignetteEngine[][][][]\T1/ptm/m/n/10 , such as []\T1/pcr/m/n/10 "utils::Sweave" []\T1/ptm/m/n/10 or [1970] Overfull \hbox (0.78088pt too wide) in paragraph at lines 5550--5550 [] \T1/pcr/m/n/10 verbose = FALSE, unpacked = FALSE, subdirs = F ALSE,[] Overfull \hbox (36.78088pt too wide) in paragraph at lines 5551--5551 [] \T1/pcr/m/n/10 latestOnly = TRUE, addFiles = FALSE, rds_compr ess = "xz",[] Underfull \hbox (badness 3240) in paragraph at lines 5564--5567 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T 1/pcr/m/n/10 PACKAGES\T1/ptm/m/n/10 ', Underfull \hbox (badness 1742) in paragraph at lines 5568--5578 []\T1/pcr/m/n/10 "Package"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Version"[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 "Priority"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Depe nds"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Imports"[]\T1/ptm/m/n/10 , [1971] Underfull \hbox (badness 1127) in paragraph at lines 5606--5612 []\T1/pcr/m/n/10 write_PACKAGES []\T1/ptm/m/n/10 scans the named di-rec-tory fo r R pack-ages, ex-tracts in-for-ma-tion from Underfull \hbox (badness 1635) in paragraph at lines 5606--5612 \T1/ptm/m/n/10 each pack-age's `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' file , and writes this in-for-ma-tion into the `\T1/pcr/m/n/10 PACKAGES\T1/ptm/m/n/1 0 ', Underfull \hbox (badness 1571) in paragraph at lines 5634--5638 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by Underfull \hbox (badness 2772) in paragraph at lines 5660--5665 \T1/ptm/m/n/10 and `\T1/pcr/m/n/10 PACKAGES.gz\T1/ptm/m/n/10 ' files. See [][][ ]\T1/pcr/m/n/10 update_PACKAGES[][][] []\T1/ptm/m/n/10 for ef-fi-ciently up-dat -ing ex-ist-ing [1972] [1973] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5798--5798 [] \T1/pcr/m/n/9 " stop(errorCondition(gettext(\TS1/pcr/m/n/9 '\T1/pcr/m/n /9 needs Deep Thought\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), class=\TS1/pcr/m/n/9 '\T1 /pcr/m/n/9 myError\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ))",[] [1974] [1975]) (./utils-pkg.tex [1976] Chapter 14. Underfull \hbox (badness 1072) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/pcr/m/n/10 insertions[]\T1/ptm/m/n/10 ', [1977] [1978] [1979] [1980] Overfull \hbox (4.38043pt too wide) in paragraph at lines 260--260 []\T1/pcr/m/n/9 find("cor", numeric = TRUE) # numbers with these names[] [1981] [1982] Underfull \hbox (badness 10000) in paragraph at lines 378--383 \T1/ptm/m/n/10 are []\T1/pcr/m/n/10 c("vertical", "horizontal", "cascade", "min imize", Underfull \hbox (badness 10000) in paragraph at lines 384--386 []\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 list[][][] []\T1/ptm/m/n/10 of win-dow han-dles, by de-fault pro-duced by [1983] Overfull \hbox (9.78043pt too wide) in paragraph at lines 450--450 []\T1/pcr/m/n/9 # This default is useful only in SDI mode: it will tile any F irefox window[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 452--452 []\T1/pcr/m/n/9 .arrangeWindowsDefaults <- list(c("R", "all"), pattern = c("", "Firefox"))[] Overfull \hbox (60.78088pt too wide) in paragraph at lines 469--469 [] \T1/pcr/m/n/10 prompts = getOption("askYesNo", gettext(c("Yes", "No ", "Cancel"))),[] [1984] [1985] [1986] Overfull \hbox (6.78088pt too wide) in paragraph at lines 691--691 []\T1/pcr/m/n/10 aspell_package_R_files(dir, ignore = character(), control = l ist(),[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 692--692 [] \T1/pcr/m/n/10 program = NULL, dictionaries = charact er())[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 693--693 []\T1/pcr/m/n/10 aspell_package_C_files(dir, ignore = character(), control = l ist(),[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 694--694 [] \T1/pcr/m/n/10 program = NULL, dictionaries = charact er())[] [1987] Underfull \hbox (badness 10000) in paragraph at lines 728--734 []\T1/ptm/m/n/10 Functions []\T1/pcr/m/n/10 aspell_package_Rd_files[]\T1/ptm/m/ n/10 , []\T1/pcr/m/n/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 4416) in paragraph at lines 728--734 []\T1/pcr/m/n/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 a spell_package_C_files []\T1/ptm/m/n/10 per-form spell check- [1988] Overfull \hbox (6.78088pt too wide) in paragraph at lines 797--797 [] \T1/pcr/m/n/10 fields = getOption("available_packages_fie lds"),[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 802--802 [] \T1/pcr/m/n/10 str2logical(Sys.getenv("R_PACKAGES_CAC HE_USER_DIR",[] Underfull \hbox (badness 10000) in paragraph at lines 842--845 [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 in-di-cat-ing if caching sh ould hap-pen in \T1/ptm/b/n/10 tools\T1/ptm/m/n/10 ' [1989] Underfull \hbox (badness 1552) in paragraph at lines 936--942 []\T1/ptm/m/n/10 A char-ac-ter ma-trix with one row per pack-age, row names the pack-age names and col- [1990] Overfull \hbox (31.3804pt too wide) in paragraph at lines 963--963 []\T1/pcr/m/n/9 db <- available.packages(repos = findCRANmirror("web"), filter s = "duplicates")[] [1991] Overfull \hbox (6.78088pt too wide) in paragraph at lines 1065--1065 []\T1/pcr/m/n/10 bibentry(bibtype, textVersion = NULL, header = NULL, footer = NULL, [1992] [1993] Underfull \hbox (badness 7649) in paragraph at lines 1139--1145 [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 in-di-cat-ing if Bib-TeX co de should be given ad-di-tion-ally; Underfull \hbox (badness 5533) in paragraph at lines 1139--1145 \T1/ptm/m/n/10 cur-rently ap-plies only to []\T1/pcr/m/n/10 style = "citation"[ ]\T1/ptm/m/n/10 . The de-fault for Underfull \hbox (badness 4739) in paragraph at lines 1139--1145 \T1/ptm/m/n/10 the []\T1/pcr/m/n/10 print() []\T1/ptm/m/n/10 method de-pends on the num-ber of (bib) en-tries and Underfull \hbox (badness 1215) in paragraph at lines 1139--1145 \T1/ptm/m/n/10 For ex-am-ple, to see no Bib-TeX at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1148--1150 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1994] Underfull \hbox (badness 10000) in paragraph at lines 1266--1269 []\T1/ptm/m/n/10 The DOI ([][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Digital _ Object _ [1995] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1349--1349 [] \T1/pcr/m/n/9 author = as.person("Anthony C. Davison [aut], David V. Hi nkley [aut]"),[] [1996] [1997] [1998] [1999] [2000] [2001] Underfull \hbox (badness 1859) in paragraph at lines 1758--1767 []\T1/ptm/m/n/10 For ex-am-ple, sup-pose that on a data set which you know to b e quite large the com- Underfull \hbox (badness 2042) in paragraph at lines 1758--1767 \T1/ptm/m/n/10 mand []\T1/pcr/m/n/10 data.frame(x, y, z, monday, tuesday) []\T1 /ptm/m/n/10 never re-turns. Do not re-port that [2002] [2003] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1863--1863 [] \T1/pcr/m/n/9 data = infert, family = b inomial())))[] [2004] Overfull \hbox (66.78088pt too wide) in paragraph at lines 1898--1898 []\T1/pcr/m/n/10 changedFiles(before, after, path = before$path, timestamp = b efore$timestamp,[] [2005] Overfull \hbox (20.58041pt too wide) in paragraph at lines 2044--2044 []\T1/pcr/m/n/9 snapshot <- fileSnapshot(dir, timestamp = tempfile("timestamp" ), md5sum=TRUE)[] [2006] Underfull \hbox (badness 2277) in paragraph at lines 2113--2118 []\T1/pcr/m/n/10 charClass []\T1/ptm/m/n/10 was added in \T1/phv/m/n/10 R \T1/p tm/m/n/10 4.1.0. A less di-rect way to ex-am-ine char-ac-ter classes [2007] Overfull \hbox (36.7804pt too wide) in paragraph at lines 2145--2145 []\T1/pcr/m/n/9 cl <- c("alnum", "alpha", "blank", "digit", "graph", "punct", "upper", "xdigit")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 2147--2147 []\T1/pcr/m/n/9 X <- as.data.frame(X); row.names(X) <- sQuote(intToUtf8(x, mul tiple = TRUE))[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2155--2155 []\T1/pcr/m/n/9 ## How many printable characters are there? (Around 280,000 in Unicode 13.)[] [2008] [2009] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2303--2303 []\T1/pcr/m/n/10 chooseBioCmirror(graphics = getOption("menu.graphics"), ind = NULL, [2010] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2355--2355 []\T1/pcr/m/n/10 chooseCRANmirror(graphics = getOption("menu.graphics"), ind = NULL, [2011] [2012] Underfull \hbox (badness 1117) in paragraph at lines 2481--2488 []\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/pcr/m/n/10 citation() []\T1/ ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print Underfull \hbox (badness 1400) in paragraph at lines 2481--2488 \T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I f a pack-age has more [2013] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2564--2564 []\T1/pcr/m/n/10 citeNatbib(keys, bib, textual = FALSE, before = NULL, after = NULL,[] [2014] [2015] Overfull \hbox (15.18042pt too wide) in paragraph at lines 2684--2684 [] \T1/pcr/m/n/9 author = as.person("Anthony C. Davison [aut], David V. Hi nkley [aut]"),[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 2724--2724 []\T1/pcr/m/n/10 citEntry(entry, textVersion = NULL, header = NULL, footer = N ULL, ...) [2016] Underfull \hbox (badness 1082) in paragraph at lines 2753--2757 [][][]\T1/pcr/m/n/10 citation[][][] []\T1/ptm/m/n/10 for more in-for-ma-tion ab out cit-ing R and R pack-ages and `\T1/pcr/m/n/10 CITATION\T1/ptm/m/n/10 ' file s; pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard }) has been already used, duplicate ignored \relax l.2758 ... the Clipboard in MS Windows}{clipboard} [2017] [2018] Underfull \hbox (badness 10000) in paragraph at lines 2882--2884 []\T1/ptm/m/n/10 Compiling in sup-port for sock-ets was op-tional prior to \T1/ phv/m/n/10 R \T1/ptm/m/n/10 3.3.0: see [2019] [2020] [2021] [2022] Underfull \hbox (badness 10000) in paragraph at lines 3103--3105 []\T1/ptm/m/n/10 character string, in-di-cat-ing which type of pack-ages: see [2023] [2024] [2025] [2026] Underfull \hbox (badness 1762) in paragraph at lines 3396--3399 []\T1/ptm/m/n/10 To just look in the `\T1/pcr/m/n/10 data\T1/ptm/m/n/10 ' di-re c-tory of the cur-rent work-ing di-rec-tory, set []\T1/pcr/m/n/10 package = [2027] Overfull \hbox (63.78036pt too wide) in paragraph at lines 3484--3484 []\T1/pcr/m/n/9 try(data(package = "rpart"), silent = TRUE) # list the data se ts in the rpart package[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3485--3485 []\T1/pcr/m/n/9 data(USArrests, "VADeaths") # load the data sets \TS1/pcr/m /n/9 '\T1/pcr/m/n/9 USArrests\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 and \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 VADeaths\TS1/pcr/m/n/9 '[] [2028] Underfull \hbox (badness 2452) in paragraph at lines 3559--3562 []\T1/ptm/m/n/10 The data en-try win-dow re-sponds to X re-sources of class []\ T1/pcr/m/n/10 R_dataentry[]\T1/ptm/m/n/10 . Re-sources [2029] [2030] [2031] [2032] [2033] [2034] Overfull \hbox (74.58035pt too wide) in paragraph at lines 3987--3987 [] \T1/pcr/m/n/9 DLL.version(file.path(R.home(), "library/stats/libs", .Platf orm$r_arch, "stats.dll"))[] [2035] [2036] Underfull \hbox (badness 4779) in paragraph at lines 4068--4073 []\T1/ptm/m/n/10 Support for method []\T1/pcr/m/n/10 "libcurl" []\T1/ptm/m/n/10 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use Underfull \hbox (badness 1072) in paragraph at lines 4131--4135 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/pcr/m/n/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [2037] Underfull \hbox (badness 7238) in paragraph at lines 4192--4197 []\T1/ptm/m/n/10 For the []\T1/pcr/m/n/10 "libcurl" []\T1/ptm/m/n/10 and []\T1/ pcr/m/n/10 "curl" []\T1/ptm/m/n/10 meth-ods, prox-ies can be set \T1/ptm/m/it/1 0 via \T1/ptm/m/n/10 the en-vi-ron- Underfull \hbox (badness 1337) in paragraph at lines 4192--4197 \T1/ptm/m/n/10 ment vari-ables []\T1/pcr/m/n/10 http_proxy []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 ftp_proxy[]\T1/ptm/m/n/10 . See [][]$\T1/pcr/m/n/10 https : / / curl . se / libcurl / c / Underfull \hbox (badness 1184) in paragraph at lines 4207--4223 \T1/ptm/m/n/10 string con-tain-ing `[]\T1/pcr/m/n/10 "Schannel"[]\T1/ptm/m/n/10 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron- [2038] [2039] Underfull \hbox (badness 4660) in paragraph at lines 4333--4336 \T1/ptm/m/n/10 able at the repos-i-to-ries, or []\T1/pcr/m/n/10 NULL []\T1/ptm/ m/n/10 which makes an in-ter-nal call to Underfull \hbox (badness 10000) in paragraph at lines 4357--4359 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/pcr/m/n/10 do wnload.file[][][] []\T1/ptm/m/n/10 and [2040] [2041] [2042] Underfull \hbox (badness 1565) in paragraph at lines 4544--4548 []\T1/ptm/m/n/10 Data frame columns are co-erced on in-put to \T1/ptm/m/it/10 c har-ac-ter \T1/ptm/m/n/10 un-less nu-meric (in the sense of [2043] Overfull \hbox (0.78088pt too wide) in paragraph at lines 4627--4627 [] \T1/pcr/m/n/10 character.only = FALSE, give.lines = FALSE, local = F ALSE,[] [2044] Underfull \hbox (badness 1910) in paragraph at lines 4662--4669 \T1/ptm/m/n/10 is saved, then ini-tial-ized to a spec-i-fied state, the ex-am-p le is run and Underfull \hbox (badness 1655) in paragraph at lines 4662--4669 \T1/ptm/m/n/10 the (saved) state is re-stored. []\T1/pcr/m/n/10 setRNG = TRUE [ ]\T1/ptm/m/n/10 sets the same state as Underfull \hbox (badness 2846) in paragraph at lines 4662--4669 []\T1/pcr/m/n/10 R CMD [][]check[][][] []\T1/ptm/m/n/10 does for run-ning a pac k-age's ex-am-ples. This is cur- Underfull \hbox (badness 3460) in paragraph at lines 4662--4669 \T1/ptm/m/n/10 rently equiv-a-lent to []\T1/pcr/m/n/10 setRNG = {RNGkind("defau lt", "default", Underfull \hbox (badness 1931) in paragraph at lines 4669--4676 []\T1/ptm/m/n/10 logical (or []\T1/pcr/m/n/10 "default"[]\T1/ptm/m/n/10 ) in-di -cat-ing if [][][]\T1/pcr/m/n/10 devAskNewPage[][][](ask = TRUE) [2045] [2046] [2047] [2048] Underfull \hbox (badness 5939) in paragraph at lines 4922--4924 []\T1/ptm/m/n/10 An en-try in []\T1/pcr/m/n/10 getOption("repos") []\T1/ptm/m/n /10 named `[]\T1/pcr/m/n/10 CRAN[]\T1/ptm/m/n/10 ' which is not the de-fault [2049] [2050] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5065--5065 []\T1/pcr/m/n/9 # Set a breakpoint in both copies of that function, assuming o ne is in the[] [2051]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.for mat}) has been already used, duplicate ignored \relax l.5136 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.5136 ...mat Unordered and Ordered Lists}{format} [2052] [2053] [2054] [2055] [2056] [2057] [2058] [2059] Underfull \hbox (badness 1622) in paragraph at lines 5659--5663 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2060] [2061] [2062] [2063] [2064] [2065] Underfull \hbox (badness 1448) in paragraph at lines 6044--6049 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2066] [2067] Overfull \hbox (96.78088pt too wide) in paragraph at lines 6193--6193 []\T1/pcr/m/n/10 ## NB: The methods for \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 data.f rame\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 and \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 array\ TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 are identical to the \TS1/pcr/m/n/10 '\T1/pcr/ m/n/10 matrix\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 one[] Overfull \hbox (66.78088pt too wide) in paragraph at lines 6205--6205 []\T1/pcr/m/n/10 tail(x, n = 6L, keepnums = TRUE, addrownums, ...) # exported as tail.matrix()[] [2068] [2069] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6347--6347 [] \T1/pcr/m/n/9 ## BUT if I use "useAttrib(.)", this is *not* ok, when n i s of length 2:[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 6348--6348 [] \T1/pcr/m/n/9 ## --- because [i,j]-indexing of data frames *also* drops "other" attributes ..[] [2070] [2071] [2072] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6558--6558 [] \T1/pcr/m/n/9 ## -> nicely formatted pdf -- including math formula -- for h elp(dgamma):[] [2073] Underfull \hbox (badness 10000) in paragraph at lines 6642--6644 []\T1/ptm/m/n/10 The post-ing guide ([][]$\T1/pcr/m/n/10 https : / / www . r-[] project . org / posting-[]guide . html$[][]\T1/ptm/m/n/10 ), also [2074] Underfull \hbox (badness 1502) in paragraph at lines 6691--6697 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6691--6697 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2075] [2076] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6812--6812 []\T1/pcr/m/n/9 help.search("linear models") # In case you forgot how to fit linear models[] Underfull \hbox (badness 10000) in paragraph at lines 6871--6880 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in- Underfull \hbox (badness 10000) in paragraph at lines 6871--6880 \T1/ptm/m/n/10 dex, `\T1/ptm/m/sl/10 R_DOC_DIR\T1/pcr/m/n/10 /html/packages.htm l\T1/ptm/m/n/10 ', which can be re-made by [2077] Underfull \hbox (badness 2150) in paragraph at lines 6933--6936 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2078] Underfull \hbox (badness 5175) in paragraph at lines 6949--6952 []\T1/pcr/m/n/10 hsearch_db() []\T1/ptm/m/n/10 builds and caches the help searc h database for sub-se-quent use by [2079] Underfull \hbox (badness 3118) in paragraph at lines 7072--7074 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2080] [2081] [2082] Underfull \hbox (badness 10000) in paragraph at lines 7277--7284 []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 means to use []\T1/pcr/m/n/10 c("Depends ", "Imports", "LinkingTo", Underfull \hbox (badness 10000) in paragraph at lines 7277--7284 \T1/pcr/m/n/10 "Suggests") []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pkgs []\T1/ptm /m/n/10 and []\T1/pcr/m/n/10 c("Depends", "Imports", Underfull \hbox (badness 1270) in paragraph at lines 7277--7284 \T1/pcr/m/n/10 "LinkingTo") []\T1/ptm/m/n/10 for added de-pen-den-cies: this in -stalls all the pack-ages Underfull \hbox (badness 1270) in paragraph at lines 7292--7302 \T1/ptm/m/n/10 for the `[]\T1/pcr/m/n/10 --configure-args[]\T1/ptm/m/n/10 ' fla g in the call to []\T1/pcr/m/n/10 R CMD INSTALL[]\T1/ptm/m/n/10 . If [2083] Underfull \hbox (badness 1975) in paragraph at lines 7334--7338 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be passed to []\T1/pcr/m/n/10 R Underfull \hbox (badness 4913) in paragraph at lines 7334--7338 \T1/pcr/m/n/10 CMD INSTALL []\T1/ptm/m/n/10 for a source pack-age in-stall. E.g ., []\T1/pcr/m/n/10 c("--html", Underfull \hbox (badness 10000) in paragraph at lines 7334--7338 \T1/pcr/m/n/10 "--no-multiarch", "--no-test-load") []\T1/ptm/m/n/10 or, for ma- cOS, Underfull \hbox (badness 1424) in paragraph at lines 7343--7346 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to Underfull \hbox (badness 10000) in paragraph at lines 7356--7360 []\T1/ptm/m/n/10 further ar-gu-ments to be passed to [][][]\T1/pcr/m/n/10 downl oad.file[][][][]\T1/ptm/m/n/10 , [2084] Underfull \hbox (badness 2376) in paragraph at lines 7424--7431 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/pcr/m/n /10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7424--7431 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7424--7431 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1087) in paragraph at lines 7432--7435 []\T1/ptm/m/n/10 Using pack-ages with []\T1/pcr/m/n/10 type = "source" []\T1/pt m/m/n/10 al-ways works pro-vided the pack-age con-tains no [2085] Underfull \hbox (badness 1314) in paragraph at lines 7505--7512 []\T1/pcr/m/n/10 install.packages []\T1/ptm/m/n/10 needs to be able to com-pute all the de-pen-den-cies of []\T1/pcr/m/n/10 pkgs []\T1/ptm/m/n/10 from [2086] Underfull \hbox (badness 10000) in paragraph at lines 7588--7593 [][][]\T1/pcr/m/n/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/ 10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 download.pac kages[][][][]\T1/ptm/m/n/10 , Overfull \hbox (25.98041pt too wide) in paragraph at lines 7611--7611 [] \T1/pcr/m/n/9 configure.args = c(RNetCDF = "--with-netcdf-include=/usr/inc lude/udunits2"))[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 7629--7629 [] \T1/pcr/m/n/10 str2logical(Sys.getenv("R_PACKAGES_CAC HE_USER_DIR",[] [2087] Underfull \hbox (badness 10000) in paragraph at lines 7650--7653 [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 in-di-cat-ing if caching sh ould hap-pen in \T1/ptm/b/n/10 tools\T1/ptm/m/n/10 ' Underfull \hbox (badness 5133) in paragraph at lines 7654--7658 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each pack-age's Underfull \hbox (badness 1983) in paragraph at lines 7668--7671 []\T1/pcr/m/n/10 installed.packages []\T1/ptm/m/n/10 scans the `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' files of each pack-age found along Overfull \hbox (9.78043pt too wide) in paragraph at lines 7715--7715 []\T1/pcr/m/n/9 plic <- installed.packages(.Library, priority = "high", fields = "License")[] [2088] Overfull \hbox (15.18042pt too wide) in paragraph at lines 7720--7720 []\T1/pcr/m/n/9 ## Keep packages that come with R (priority="high") and all ot hers separate![] [2089] [2090] Underfull \hbox (badness 4132) in paragraph at lines 7846--7848 []\T1/ptm/m/n/10 The ac-tual link-ing com-mand is con-structed by the ver-sion of []\T1/pcr/m/n/10 libtool []\T1/ptm/m/n/10 in-stalled at [2091] [2092] [2093] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8013--8013 []\T1/pcr/m/n/9 ls.str(mode = "list") #- what are the structured objects I h ave defined?[] [2094] [2095] Overfull \hbox (0.78088pt too wide) in paragraph at lines 8156--8156 []\T1/pcr/m/n/10 make.socket(host = "localhost", port, fail = TRUE, server = F ALSE) [2096] Underfull \hbox (badness 10000) in paragraph at lines 8196--8198 []\T1/ptm/m/n/10 Compiling in sup-port for sock-ets was op-tional prior to \T1/ phv/m/n/10 R \T1/ptm/m/n/10 3.3.0: see [2097] Overfull \hbox (36.78088pt too wide) in paragraph at lines 8288--8288 [] \T1/pcr/m/n/10 methods(generic.function, class, all.names = FALSE, dropPa th = FALSE)[] Overfull \hbox (132.78088pt too wide) in paragraph at lines 8290--8290 [] \T1/pcr/m/n/10 all.names = FALSE, dropPa th = FALSE, useEnv = FALSE)[] Underfull \hbox (badness 10000) in paragraph at lines 8303--8305 []\T1/ptm/m/n/10 a sym-bol or char-ac-ter string nam-ing a class: only used if Underfull \hbox (badness 10000) in paragraph at lines 8321--8323 []\T1/ptm/m/n/10 typically the re-sult of []\T1/pcr/m/n/10 methods(..)[]\T1/ptm /m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2098] [2099] [2100] [2101] Underfull \hbox (badness 1859) in paragraph at lines 8553--8556 []\T1/ptm/m/n/10 logical spec-i-fy-ing that the news should be opened in the br owser (by [2102] [2103] Overfull \hbox (25.98041pt too wide) in paragraph at lines 8681--8681 []\T1/pcr/m/n/9 db4 <- news(Version == "4.0.0" & grepl("^BUG", Category) & gre pl("PR#", Text),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8687--8687 []\T1/pcr/m/n/9 ## News from a date range (\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 Matri x\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 is there in a regular R installation):[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 8695--8695 []\T1/pcr/m/n/9 ## Which categories have been in use? % R-core maybe should st andardize a bit more[] [2104] Underfull \hbox (badness 1917) in paragraph at lines 8782--8784 []\T1/pcr/m/n/10 "B"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "KiB"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "MiB"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "GiB"[]\T1/ptm/m/n/1 0 , []\T1/pcr/m/n/10 "TiB"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "PiB"[]\T1/ptm/m/ n/10 , Underfull \hbox (badness 1331) in paragraph at lines 8790--8794 []\T1/ptm/m/n/10 For all stan-dards, []\T1/pcr/m/n/10 units = "auto" []\T1/ptm/ m/n/10 is also al-lowed. If []\T1/pcr/m/n/10 standard = [2105] [2106] [2107] Underfull \hbox (badness 7099) in paragraph at lines 8954--8959 []\T1/ptm/m/n/10 optionally a [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/ n/10 string with an en-cod-ing for an op-tional [2108] Overfull \hbox (66.78088pt too wide) in paragraph at lines 9056--9056 [] \T1/pcr/m/n/10 date.fields = c("Date", "Packaged", "Date/Publica tion", "Built"),[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 9057--9057 [] \T1/pcr/m/n/10 tryFormats = c("%Y-%m-%d", "%Y/%m/%d", "%D", "%m/ %d/%y"),[] Overfull \hbox (84.78088pt too wide) in paragraph at lines 9058--9058 [] \T1/pcr/m/n/10 desc = packageDescription(pkg, lib.loc=lib.loc, f ields=date.fields))[] [2109] Underfull \hbox (badness 10000) in paragraph at lines 9086--9088 []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 asDateBuilt()[]\T1/ptm/m/n/10 , a [][][]\ T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string as from Underfull \hbox (badness 10000) in paragraph at lines 9100--9102 []\T1/pcr/m/n/10 packageVersion() []\T1/ptm/m/n/10 is a con-ve-nience short-cut , al-low-ing things like []\T1/pcr/m/n/10 if Underfull \hbox (badness 1259) in paragraph at lines 9108--9113 []\T1/ptm/m/n/10 If a `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2110] Overfull \hbox (9.78043pt too wide) in paragraph at lines 9152--9152 [] \T1/pcr/m/n/9 identical(pu, packageDate("stats"))) # as "utils" an d "stats" are[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 9153--9153 [] \T1/pcr/m/n/9 # both \TS1/pcr/m/n/9 '\T1/ pcr/m/n/9 base R\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 and "Built" at same time[] [2111] [2112] Underfull \hbox (badness 10000) in paragraph at lines 9279--9284 []\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 "Status"[]\T1/ptm/m/n/10 , a fac-tor wit h lev-els []\T1/pcr/m/n/10 c("ok", "upgrade", Underfull \hbox (badness 10000) in paragraph at lines 9286--9289 []\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 "Status"[]\T1/ptm/m/n/10 , a fac-tor wit h lev-els []\T1/pcr/m/n/10 c("installed", "not [2113] [2114] Overfull \hbox (0.78088pt too wide) in paragraph at lines 9403--9403 [] \T1/pcr/m/n/10 include = c("given", "family", "email", "role", "comme nt"),[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 9404--9404 [] \T1/pcr/m/n/10 braces = list(given = "", family = "", email = c("<", ">"),[] [2115] [2116] Overfull \hbox (4.38043pt too wide) in paragraph at lines 9591--9591 [] \T1/pcr/m/n/9 "S original, "),[] [2117] [2118] [2119] Underfull \hbox (badness 1789) in paragraph at lines 9764--9766 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2120] [2121] [2122] [2123] Underfull \hbox (badness 2600) in paragraph at lines 9988--9991 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic; de-faults to [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] Overfull \hbox (30.78088pt too wide) in paragraph at lines 10611--10611 [] \T1/pcr/m/n/10 dec = ".", numerals = c("allow.loss", "warn.loss", " no.loss"),[] [2132] [2133] Overfull \hbox (20.58041pt too wide) in paragraph at lines 10772--10772 []\T1/pcr/m/n/9 dd <- read.DIF(file.path(udir, "exDIF.dif"), header = TRUE, tr anspose = TRUE)[] [2134] [2135] [2136] Overfull \hbox (4.38043pt too wide) in paragraph at lines 10953--10953 []\T1/pcr/m/n/9 read.fwf(ff, widths = list(c(1,0, 2,3), c(2,2,2))) #> 1 NA 23 456 98 76 54[] [2137] Overfull \hbox (42.78088pt too wide) in paragraph at lines 11039--11039 [] \T1/pcr/m/n/10 dec = ".", numerals = c("allow.loss", "warn.loss", "no.loss"),[] [2138] Overfull \hbox (72.78088pt too wide) in paragraph at lines 11040--11040 [] \T1/pcr/m/n/10 row.names, col.names, as.is = !stringsAsFactors, t ryLogical = TRUE,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 11042--11042 [] \T1/pcr/m/n/10 skip = 0, check.names = TRUE, fill = !blank.lines. skip,[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 11047--11047 [] \T1/pcr/m/n/10 fileEncoding = "", encoding = "unknown", text, ski pNul = FALSE)[] [2139] Underfull \hbox (badness 2027) in paragraph at lines 11119--11122 []\T1/ptm/m/n/10 Using []\T1/pcr/m/n/10 row.names = NULL []\T1/ptm/m/n/10 force s row num-ber-ing. Miss-ing or []\T1/pcr/m/n/10 NULL Underfull \hbox (badness 2435) in paragraph at lines 11142--11146 []\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 de-ter-m in-ing if columns con-sist-ing en-tirely of []\T1/pcr/m/n/10 "F"[]\T1/ptm/m/n/1 0 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1824) in paragraph at lines 11142--11146 []\T1/pcr/m/n/10 "FALSE"[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 "TRUE" []\T1/pt m/m/n/10 should be con-verted to [][][]\T1/pcr/m/n/10 logical[][][][]\T1/ptm/m/ n/10 ; passed to [2140] [2141] [2142] Overfull \hbox (12.78088pt too wide) in paragraph at lines 11404--11404 []\T1/pcr/m/n/10 readRegistry(key, hive = c("HLM", "HCR", "HCU", "HU", "HCC", "HPD"), Overfull \hbox (6.78088pt too wide) in paragraph at lines 11405--11405 [] \T1/pcr/m/n/10 maxdepth = 1, view = c("default", "32-bit", "64- bit"))[] Underfull \hbox (badness 10000) in paragraph at lines 11412--11417 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are Underfull \hbox (badness 10000) in paragraph at lines 11412--11417 \T1/ptm/m/n/10 for []\T1/pcr/m/n/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/ pcr/m/n/10 HKEY_CLASSES_ROOT[]\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 11412--11417 []\T1/pcr/m/n/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 HKEY_USER S[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 HKEY_CURRENT_CONFIG [2143] [2144] [2145] [2146] Overfull \hbox (18.78088pt too wide) in paragraph at lines 11644--11644 [] \T1/pcr/m/n/10 ipar <- list(mean = c(0, 1), vcov = c bind(c(1, 1), c (1, 0))) [2147] [2148] [2149] [2150] Underfull \hbox (badness 2469) in paragraph at lines 11910--11914 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2024). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 10000) in paragraph at lines 11910--11914 [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = [2151] Overfull \hbox (25.98041pt too wide) in paragraph at lines 11928--11928 []\T1/pcr/m/n/9 as.roman(c(NA, 1:3, "", strrep("I", 1:7))) # + NA with a warni ng for the last.[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 11933--11933 []\T1/pcr/m/n/9 ## simple consistency checks -- arithmetic when result is in {1,2,..,4999} :[] [2152] [2153] Overfull \hbox (18.78088pt too wide) in paragraph at lines 12087--12087 []\T1/pcr/m/n/10 4. | \-base:::tryCatchOne(expr, names, parentenv, handler s[[1L]])[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 12088--12088 []\T1/pcr/m/n/10 5. | \-base:::doTryCatch(return(expr), name, parentenv, handler)[] [2154] Underfull \hbox (badness 10000) in paragraph at lines 12190--12192 []\T1/ptm/m/n/10 The chap-ter on ``Tidy-ing and pro-fil-ing R code'' in `Writ-i ng R Ex-ten-sions': [2155] Overfull \hbox (0.78088pt too wide) in paragraph at lines 12223--12223 []\T1/pcr/m/n/10 Rprofmem(filename = "Rprofmem.out", append = FALSE, threshold = 0) [2156] [2157] Underfull \hbox (badness 1917) in paragraph at lines 12356--12359 []\T1/ptm/m/n/10 If `[]\T1/pcr/m/n/10 --default-packages[]\T1/ptm/m/n/10 ' is n ot used, then []\T1/pcr/m/n/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-me nt vari- Underfull \hbox (badness 4328) in paragraph at lines 12356--12359 \T1/ptm/m/n/10 able []\T1/pcr/m/n/10 R_SCRIPT_DEFAULT_PACKAGES[]\T1/ptm/m/n/10 . If this is set, then it takes prece-dence over Overfull \hbox (106.98032pt too wide) in paragraph at lines 12379--12379 []\T1/pcr/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 sessionInfo()\TS1/pcr/m/n/9 '[] [2158] Overfull \hbox (54.78088pt too wide) in paragraph at lines 12471--12471 [] \T1/pcr/m/n/10 restrict = c("functions", "descriptions", "news", "Rfunctions",[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 12472--12472 [] \T1/pcr/m/n/10 "Rmanuals", "READMEs", "views", "vig nettes"),[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 12474--12474 [] \T1/pcr/m/n/10 sortby = c("score", "date:late", "date:early", "s ubject",[] [2159] Overfull \hbox (36.78088pt too wide) in paragraph at lines 12475--12475 [] \T1/pcr/m/n/10 "subject:descending", "size", "size:de scending"),[] Underfull \hbox (badness 6725) in paragraph at lines 12498--12506 \T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 score[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 date: late []\T1/ptm/m/n/10 for sort-ing by date with lat-est re-sults first, Underfull \hbox (badness 2662) in paragraph at lines 12498--12506 \T1/ptm/m/n/10 der, []\T1/pcr/m/n/10 subject:descending []\T1/ptm/m/n/10 for re -verse al-pha-bet-i-cal or-der, []\T1/pcr/m/n/10 size []\T1/ptm/m/n/10 or [2160] Overfull \hbox (9.78043pt too wide) in paragraph at lines 12543--12543 []\T1/pcr/m/n/9 fullquery <- RSiteSearch("lattice", restrict = c("vignettes"," Rfunctions"))[] Underfull \hbox (badness 1377) in paragraph at lines 12599--12602 []\T1/ptm/m/n/10 Character string spec-i-fy-ing whether emacs style ([]\T1/pcr/ m/n/10 "etags"[]\T1/ptm/m/n/10 ) or vi style [2161] Underfull \hbox (badness 3646) in paragraph at lines 12634--12636 [][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p tm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / www . gnu . org / software / Overfull \hbox (30.78088pt too wide) in paragraph at lines 12672--12672 [] \T1/pcr/m/n/10 split = FALSE, quiet = FALSE, drop.evalFALSE = F ALSE, ...)[] [2162] [2163] [2164] Underfull \hbox (badness 10000) in paragraph at lines 12854--12858 []\T1/ptm/m/n/10 The de-fault for []\T1/pcr/m/n/10 stylepath []\T1/ptm/m/n/10 i s now taken from the en-vi-ron-ment vari-able [2165] Underfull \hbox (badness 10000) in paragraph at lines 12887--12893 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a Underfull \hbox (badness 2027) in paragraph at lines 12902--12908 []\T1/ptm/m/n/10 The use of fancy quotes (see [][][]\T1/pcr/m/n/10 sQuote[][][] []\T1/ptm/m/n/10 ) can cause prob-lems when set-ting \T1/phv/m/n/10 R \T1/ptm/m /n/10 out-put in [2166] [2167] Overfull \hbox (6.78088pt too wide) in paragraph at lines 13059--13059 [] \T1/pcr/m/n/10 units = "in", type = "quartz", bg = "transpa rent")[] Underfull \hbox (badness 1009) in paragraph at lines 13077--13089 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If Underfull \hbox (badness 2600) in paragraph at lines 13117--13119 []\T1/ptm/m/n/10 The file `\T1/pcr/m/n/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ures the R GUI ([]\T1/pcr/m/n/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows and [2168] Underfull \hbox (badness 1043) in paragraph at lines 13160--13165 []\T1/ptm/m/n/10 At the time of writ-ing `\T1/pcr/m/n/10 Rdevga\T1/ptm/m/n/10 ' con-fig-ured the map-ping of font num-bers to fonts, and [2169] [2170] [2171] [2172] [2173] Underfull \hbox (badness 10000) in paragraph at lines 13479--13482 []\T1/ptm/m/n/10 (not al-ways present): a named list of the re-sults of call-in g Underfull \hbox (badness 10000) in paragraph at lines 13482--13485 []\T1/ptm/m/n/10 (not al-ways present): a named list of the re-sults of call-in g [2174] Overfull \hbox (9.78043pt too wide) in paragraph at lines 13528--13528 []\T1/pcr/m/n/9 toLatex(sI, locale = FALSE) # shortest; possibly desirable at end of report[] Underfull \hbox (badness 2158) in paragraph at lines 13590--13593 []\T1/ptm/m/n/10 Repository `[]\T1/pcr/m/n/10 CRAN[]\T1/ptm/m/n/10 ' is treated spe-cially: the value is taken from the cur-rent set-ting of [2175] Overfull \hbox (0.78088pt too wide) in paragraph at lines 13643--13643 []\T1/pcr/m/n/10 setWindowTitle(suffix, title = paste(getIdentification(), suf fix)) [2176] [2177] Underfull \hbox (badness 2302) in paragraph at lines 13800--13802 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2178] [2179] Underfull \hbox (badness 3333) in paragraph at lines 13908--13910 []\T1/pcr/m/n/10 getSrcFilename []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 getSrcDir ectory []\T1/ptm/m/n/10 re-turn char-ac-ter vec-tors hold-ing the file- [2180] [2181] [2182] Overfull \hbox (42.78088pt too wide) in paragraph at lines 14075--14075 [] \T1/pcr/m/n/10 format(x, trim = TRUE, drop0trailing = TRUE, ...))[] Underfull \hbox (badness 5970) in paragraph at lines 14108--14111 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive Underfull \hbox (badness 2600) in paragraph at lines 14108--14111 [][][]\T1/pcr/m/n/10 options[][][]("width")[]\T1/ptm/m/n/10 ; note that this ha s only a weak ef-fect, un-less Underfull \hbox (badness 1052) in paragraph at lines 14119--14128 []\T1/ptm/m/n/10 (see [][][]\T1/pcr/m/n/10 options[][][][]\T1/ptm/m/n/10 ) whic h de-faults to []\T1/pcr/m/n/10 "no" []\T1/ptm/m/n/10 for back com-pat-i-bil-it y rea-sons; [2183] Underfull \hbox (badness 1442) in paragraph at lines 14135--14139 []\T1/ptm/m/n/10 numeric or []\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 as by de-fau lt, de-ter-min-ing the []\T1/pcr/m/n/10 nlines []\T1/ptm/m/n/10 ar-gu-ment to Overfull \hbox (36.7804pt too wide) in paragraph at lines 14181--14181 []\T1/pcr/m/n/9 str(.Machine, digits.d = 20) # extra digits for identification of binary numbers[] [2184] Overfull \hbox (15.18042pt too wide) in paragraph at lines 14208--14208 []\T1/pcr/m/n/9 ## Truncation behavior (<-> correct width measurement) for "lo ng" non-ASCII:[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 14215--14215 []\T1/pcr/m/n/9 ## nchar.max: 1st line needs an increase of 2 in order to se e 1 (in UTF-8!):[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 14217--14217 []\T1/pcr/m/n/9 invisible(lapply(60:66, function(N) str( ch , nchar.max = N))) # "1 is 1" here[] [2185] [2186] [2187] Underfull \hbox (badness 10000) in paragraph at lines 14382--14384 []\T1/ptm/m/n/10 Options other than []\T1/pcr/m/n/10 memory = "none" []\T1/ptm/ m/n/10 ap-ply only to files pro-duced by Underfull \hbox (badness 10000) in paragraph at lines 14428--14430 []\T1/ptm/m/n/10 The chap-ter on `Tidy-ing and pro-fil-ing R code' in `Writ-ing R Ex-ten-sions': [2188] Underfull \hbox (badness 10000) in paragraph at lines 14491--14494 []\T1/ptm/m/n/10 further ar-gu-ments passed to the driver's setup func-tion. Se e Underfull \hbox (badness 1389) in paragraph at lines 14491--14494 [][][]\T1/pcr/m/n/10 RweaveLatexSetup[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/ m/n/10 RtangleSetup[][][][]\T1/ptm/m/n/10 , re-spec-tively, for the ar-gu- [2189] Underfull \hbox (badness 6300) in paragraph at lines 14539--14546 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fau lt) then the avail-able syn-tax ob-jects are con-sulted in Underfull \hbox (badness 6252) in paragraph at lines 14539--14546 \T1/ptm/m/n/10 turn, and se-lected if their []\T1/pcr/m/n/10 extension []\T1/pt m/m/n/10 com-po-nent matches (as a reg-exp) the file Underfull \hbox (badness 4556) in paragraph at lines 14539--14546 \T1/ptm/m/n/10 name. Ob-jects []\T1/pcr/m/n/10 SweaveSyntaxNoweb []\T1/ptm/m/n/ 10 (with []\T1/pcr/m/n/10 extension = "[.][rsRS]nw$"[]\T1/ptm/m/n/10 ) and [2190] [2191] Underfull \hbox (badness 2020) in paragraph at lines 14704--14710 \T1/ptm/m/n/10 si-bly use-ful val-ues in-clude `[]\T1/pcr/m/n/10 -h[]\T1/ptm/m/ n/10 ' (fol-low sym-bolic links, also `[]\T1/pcr/m/n/10 -L[]\T1/ptm/m/n/10 ' on some plat-forms), Underfull \hbox (badness 1194) in paragraph at lines 14704--14710 \T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 --acls[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 -- exclude-backups[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 --exclude-vcs[]\T1/ptm/m/n /10 ' (and sim-i-lar) and on Win-dows [2192] Underfull \hbox (badness 1622) in paragraph at lines 14711--14718 []\T1/ptm/m/n/10 A con-ve-nient and ro-bust way to set op-tions for GNU []\T1/p cr/m/n/10 tar []\T1/ptm/m/n/10 is via en-vi-ron-ment vari-able [2193] Underfull \hbox (badness 5022) in paragraph at lines 14867--14871 []\T1/ptm/m/n/10 When ar-gu-ment []\T1/pcr/m/n/10 tar []\T1/ptm/m/n/10 is set t o the com-mand []\T1/pcr/m/n/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-able [2194] Underfull \hbox (badness 10000) in paragraph at lines 14874--14877 [][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ f ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / pubs . Underfull \hbox (badness 10000) in paragraph at lines 14874--14877 \T1/pcr/m/n/10 opengroup . org / onlinepubs / 9699919799 / utilities / pax . ht ml # tag _ 20 _ 92 _ [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] Overfull \hbox (6.78088pt too wide) in paragraph at lines 15493--15493 [] \T1/pcr/m/n/10 instPkgs = installed.packages(lib.loc = lib.loc, ...),[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 15499--15499 [] \T1/pcr/m/n/10 instPkgs = installed.packages(lib.loc = lib.loc, ...),[] [2203] Underfull \hbox (badness 4660) in paragraph at lines 15536--15540 \T1/ptm/m/n/10 able at the repos-i-to-ries, or []\T1/pcr/m/n/10 NULL []\T1/ptm/ m/n/10 which makes an in-ter-nal call to Underfull \hbox (badness 1694) in paragraph at lines 15550--15554 []\T1/ptm/m/n/10 by de-fault all in-stalled pack-ages, [][][]\T1/pcr/m/n/10 ins talled.packages[][][](lib.loc = Underfull \hbox (badness 10000) in paragraph at lines 15556--15561 []\T1/ptm/m/n/10 Arguments such as []\T1/pcr/m/n/10 destdir []\T1/ptm/m/n/10 an d []\T1/pcr/m/n/10 dependencies []\T1/ptm/m/n/10 to be Underfull \hbox (badness 10000) in paragraph at lines 15556--15561 \T1/ptm/m/n/10 passed to [][][]\T1/pcr/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 and []\T1/pcr/m/n/10 ignore_repo_cache[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15556--15561 []\T1/pcr/m/n/10 max_repo_cache_age []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 noCac he []\T1/ptm/m/n/10 to [][][]\T1/pcr/m/n/10 available.packages[][][] Underfull \hbox (badness 1052) in paragraph at lines 15562--15564 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2204] Underfull \hbox (badness 10000) in paragraph at lines 15592--15597 []\T1/pcr/m/n/10 available = NULL []\T1/ptm/m/n/10 make a call to []\T1/pcr/m/n /10 available.packages(contriburl = Underfull \hbox (badness 1226) in paragraph at lines 15592--15597 \T1/pcr/m/n/10 contriburl, method = method) []\T1/ptm/m/n/10 and hence by de-fa ult fil-ters on \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sion, OS type Underfull \hbox (badness 10000) in paragraph at lines 15613--15618 []\T1/ptm/m/n/10 Take care when us-ing []\T1/pcr/m/n/10 dependencies []\T1/ptm/ m/n/10 (passed to [][][]\T1/pcr/m/n/10 install.packages[][][][]\T1/ptm/m/n/10 ) with Underfull \hbox (badness 10000) in paragraph at lines 15621--15624 [][][]\T1/pcr/m/n/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n /10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 download.pa ckages[][][][]\T1/ptm/m/n/10 , [2205] Overfull \hbox (15.18042pt too wide) in paragraph at lines 15698--15698 []\T1/pcr/m/n/9 ## Not run: url.show("https://www.stats.ox.ac.uk/pub/datasets/ csb/ch3a.txt") [2206] [2207] [2208] Underfull \hbox (badness 4832) in paragraph at lines 15899--15902 [][][]\T1/pcr/m/n/10 browseVignettes[][][] []\T1/ptm/m/n/10 for an HTML-based v i-gnette browser; [][][]\T1/pcr/m/n/10 RShowDoc[][][]("\T1/ptm/m/sl/10 basename \T1/pcr/m/n/10 ", [2209] Overfull \hbox (42.18039pt too wide) in paragraph at lines 15915--15915 []\T1/pcr/m/n/9 ## Note that \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 package = *\TS1/pcr /m/n/9 ' \T1/pcr/m/n/9 is much faster in the case of many installed packages:[] [2210] Overfull \hbox (4.38043pt too wide) in paragraph at lines 15982--15982 [] \T1/pcr/m/n/9 lm(weight ~ (Time + I(Time^2)) * Diet, d ata = DAT)))[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 16004--16004 [] \T1/pcr/m/n/9 nls(weight ~ SSlogis(Time, Asym, xmid, scal), data = DD)))[] [2211] [2212] Underfull \hbox (badness 1297) in paragraph at lines 16136--16138 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the ac-tion when that menu i s se-lected, or [2213] Underfull \hbox (badness 4036) in paragraph at lines 16183--16185 []\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 winMenuDel []\T1/ptm/m/n/10 func-tion wil l delete a menu and all of its items and sub-menus. [2214] [2215] Overfull \hbox (0.78088pt too wide) in paragraph at lines 16303--16303 []\T1/pcr/m/n/10 write.table(x, file = "", append = FALSE, quote = TRUE, sep = " ", [2216] Underfull \hbox (badness 1715) in paragraph at lines 16355--16358 []\T1/ptm/m/n/10 arguments to []\T1/pcr/m/n/10 write.table[]\T1/ptm/m/n/10 : [] \T1/pcr/m/n/10 append[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 col.names[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 sep[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 dec []\T1/ptm/m/n /10 and Underfull \hbox (badness 10000) in paragraph at lines 16400--16402 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion e.g. []\T1/pcr/m/n/10 file = [2217] [2218] [2219]) [2220] [2221] [2222] (./KernSmooth-pkg.tex Chapter 15. [2223] Overfull \hbox (24.78088pt too wide) in paragraph at lines 123--123 []\T1/pcr/m/n/10 bkde2D(x, bandwidth, gridsize = c(51L, 51L), range.x, truncat e = TRUE) [2224] [2225] [2226] [2227] [2228] Overfull \hbox (18.78088pt too wide) in paragraph at lines 518--518 []\T1/pcr/m/n/10 dpill(x, y, blockmax = 5, divisor = 20, trim = 0.01, proptrun = 0.05, [2229] [2230] [2231] [2232]) (./MASS-pkg.tex Chapter 16. [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] [2241] [2242] [2243] Overfull \hbox (20.58041pt too wide) in paragraph at lines 774--774 []\T1/pcr/m/n/9 dreg <- cbind(sin = sin(2*pi*beav2$hours/24), cos = cos(2*pi*b eav2$hours/24))[] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252] [2253]pdfTeX war ning (ext4): destination with the same identifier (name{Rfn.confint.glm}) has b een already used, duplicate ignored \relax l.1477 ...{confint.glm}{confint-MASS}{confint.glm} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.confint.nls}) has been already used, d uplicate ignored \relax l.1478 ...{confint.nls}{confint-MASS}{confint.nls} [2254] [2255] [2256] [2257] [2258] [2259] [2260] [2261] [2262] [2263] [2264] [2265] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2328--2328 []\T1/pcr/m/n/10 dropterm(object, scope, scale = 0, test = c("none", "Chisq", "F"),[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2332--2332 []\T1/pcr/m/n/10 dropterm(object, scope, scale = 0, test = c("none", "Chisq", "F"),[] [2266] [2267] [2268] [2269] Underfull \hbox (badness 6559) in paragraph at lines 2616--2619 []\T1/ptm/m/n/10 further ar-gu-ments for []\T1/pcr/m/n/10 plot []\T1/ptm/m/n/10 and graph-i-cal pa-ram-e-ters. Note that [2270] [2271] [2272] Underfull \hbox (badness 10000) in paragraph at lines 2790--2795 []\T1/pcr/m/n/10 "gamma"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "geometric"[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 "log-normal"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lo gnormal"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2790--2795 []\T1/pcr/m/n/10 "logistic"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "negative binomi al"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "normal"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n /10 "Poisson"[]\T1/ptm/m/n/10 , [2273] [2274] Underfull \hbox (badness 4686) in paragraph at lines 2962--2964 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2275] [2276] [2277] Overfull \hbox (18.78088pt too wide) in paragraph at lines 3162--3162 [] \T1/pcr/m/n/10 eps.max = .Machine$double.eps^0.25, verbose = FAL SE, ...)[] [2278] [2279] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3292--3292 []\T1/pcr/m/n/9 survreg(Surv(time, cens) ~ factor(pair) + treat, gehan, dist = "exponential")[] [2280] [2281] [2282] [2283] [2284] [2285] [2286] [2287] [2288] [2289] [2290] Underfull \hbox (badness 1845) in paragraph at lines 4091--4093 []\T1/ptm/m/n/10 The va-ri-ety of bar-ley ([]\T1/pcr/m/n/10 "manchuria"[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 "svansota"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "velv et"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "trebi" []\T1/ptm/m/n/10 and [2291] [2292] [2293] [2294] [2295] [2296] [2297] Overfull \hbox (0.78088pt too wide) in paragraph at lines 4585--4585 [] \T1/pcr/m/n/10 col = 5, xlab = deparse(substitute(data)), bty = "n", ...)[] [2298] [2299] [2300] Overfull \hbox (18.78088pt too wide) in paragraph at lines 4807--4807 []\T1/pcr/m/n/10 lm.ridge(formula, data, subset, na.action, lambda = 0, model = FALSE, [2301] [2302] [2303] [2304] [2305] [2306] [2307] [2308] [2309] [2310] [2311] [2312] [2313] [2314] Overfull \hbox (42.78088pt too wide) in paragraph at lines 5864--5864 []\T1/pcr/m/n/10 mvrnorm(n = 1, mu, Sigma, tol = 1e-6, empirical = FALSE, EISP ACK = FALSE) [2315] Overfull \hbox (48.78088pt too wide) in paragraph at lines 5925--5925 []\T1/pcr/m/n/10 negative.binomial(theta = stop("\TS1/pcr/m/n/10 '\T1/pcr/m/n/ 10 theta\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 must be specified"), link = "log") [2316] [2317]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.npk}) has been already used, duplicate ignored \relax l.6085 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica te ignored \relax l.6085 ...sical N, P, K Factorial Experiment}{npk} [2318] [2319] [2320] [2321] [2322] [2323] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6504--6504 [] \T1/pcr/m/n/9 start = list(fixed=c(L75=c(48.7, -0.03), lsc=0.24)), verb ose = TRUE)))[] [2324] Overfull \hbox (18.78088pt too wide) in paragraph at lines 6592--6592 [] \T1/pcr/m/n/10 dimen, abbrev = FALSE, ..., cex=0.7, type = c("std", "tr ellis"))[] [2325] [2326] [2327] [2328] [2329] Overfull \hbox (24.78088pt too wide) in paragraph at lines 6979--6979 [] \T1/pcr/m/n/10 method = c("logistic", "probit", "loglog", "cloglog", "c auchit"))[] [2330] Underfull \hbox (badness 3138) in paragraph at lines 7057--7063 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2331] Overfull \hbox (9.78043pt too wide) in paragraph at lines 7127--7127 []\T1/pcr/m/n/9 house.plr <- polr(Sat ~ Infl + Type + Cont, weights = Freq, da ta = housing)[] [2332] [2333] Underfull \hbox (badness 1389) in paragraph at lines 7236--7239 []\T1/ptm/m/n/10 the di-men-sion of the space to be used. If this is less than []\T1/pcr/m/n/10 min(p, [2334] [2335] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7366--7366 []\T1/pcr/m/n/9 fm <- lqs(stack.loss ~ ., data = stackloss, method = "S", nsam p = "exact")[] [2336] Overfull \hbox (24.78088pt too wide) in paragraph at lines 7431--7431 [] \T1/pcr/m/n/10 method = c("plug-in", "predictive", "debiased", "looC V"), ...)[] [2337]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.pro file.glm}) has been already used, duplicate ignored \relax l.7513 ... for Profiling glm Objects}{profile.glm} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.profile.glm.1}) has been already used, duplicate ignored \relax l.7513 ... for Profiling glm Objects}{profile.glm} [2338] [2339] [2340] [2341] Underfull \hbox (badness 4686) in paragraph at lines 7808--7810 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2342] [2343] Overfull \hbox (6.78088pt too wide) in paragraph at lines 7927--7927 [] \T1/pcr/m/n/10 maxit = 20, acc = 1e-4, test.vec = "resid", lqs.control = NULL)[] Underfull \hbox (badness 1590) in paragraph at lines 7951--7955 []\T1/ptm/m/n/10 A func-tion to spec-ify the ac-tion to be taken if []\T1/pcr/m /n/10 NA[]\T1/ptm/m/n/10 s are found. The [2344] [2345] [2346] [2347] [2348] [2349] [2350] [2351] [2352] [2353] [2354] [2355] [2356] [2357] [2358] [2359] [2360] [2361] [2362] [2363] Overfull \hbox (12.78088pt too wide) in paragraph at lines 9331--9331 []\T1/pcr/m/n/10 summary(object, method = c("XtX", "XtWX"), correlation = FALS E, ...)[] [2364] Underfull \hbox (badness 2035) in paragraph at lines 9443--9445 []\T1/ptm/m/n/10 ``Fold your arms! Which is on top'' (Fac-tor, with lev-els []\ T1/pcr/m/n/10 "R on L"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "L on R"[]\T1/ptm/m/n /10 , Underfull \hbox (badness 1158) in paragraph at lines 9458--9461 []\T1/ptm/m/n/10 how much the stu-dent smokes. (Fac-tor, lev-els []\T1/pcr/m/n/ 10 "Heavy"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Regul" []\T1/ptm/m/n/10 (reg-u-l arly), [2365] Overfull \hbox (42.78088pt too wide) in paragraph at lines 9540--9540 []\T1/pcr/m/n/10 theta.md(y, mu, dfr, weights, limit = 20, eps = .Machine$doub le.eps^0.25) Overfull \hbox (30.78088pt too wide) in paragraph at lines 9542--9542 []\T1/pcr/m/n/10 theta.ml(y, mu, n, weights, limit = 10, eps = .Machine$double .eps^0.25,[] Overfull \hbox (42.78088pt too wide) in paragraph at lines 9545--9545 []\T1/pcr/m/n/10 theta.mm(y, mu, dfr, weights, limit = 10, eps = .Machine$doub le.eps^0.25)[] [2366] [2367] [2368] [2369] [2370] Underfull \hbox (badness 2951) in paragraph at lines 9905--9907 []\T1/ptm/m/n/10 The orig-i-nal data are avail-able at [][]$\T1/pcr/m/n/10 http s : / / lib . stat . cmu . edu / datasets / 1993 . [2371] [2372] [2373] [2374] [2375] [2376] [2377] [2378]) (./Matrix-pkg.tex Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 35--38 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 35--38 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2379] Underfull \hbox (badness 1769) in paragraph at lines 89--92 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2380] Underfull \hbox (badness 2229) in paragraph at lines 153--156 []\T1/ptm/m/n/10 in gen-eral an ar-bi-trary num-ber of \T1/phv/m/n/10 R \T1/ptm /m/n/10 ob-jects; here, when the first is Underfull \hbox (badness 1147) in paragraph at lines 153--156 \T1/ptm/m/n/10 an []\T1/pcr/m/n/10 "[][]abIndex[][][]" []\T1/ptm/m/n/10 vec-tor , these ar-gu-ments will be con-cate-nated to a new pdfTeX warning (ext4): destination with the same identifier (name{Rfn.all.equal }) has been already used, duplicate ignored \relax l.182 ...{all.equal}{all.equal-methods}{all.equal} Underfull \hbox (badness 10000) in paragraph at lines 209--212 []\T1/ptm/m/n/10 these three meth-ods are sim-ply us-ing Underfull \hbox (badness 10000) in paragraph at lines 215--217 []\T1/ptm/m/n/10 There are more meth-ods, no-tably also for []\T1/pcr/m/n/10 "[ ][]sparseVector[][][]"[]\T1/ptm/m/n/10 's, see [2381] Underfull \hbox (badness 3098) in paragraph at lines 264--266 []\T1/ptm/m/n/10 optional ar-gu-ments passed to the de-fault method for generic func-tion [2382] [2383] Overfull \hbox (15.18042pt too wide) in paragraph at lines 452--452 [] \T1/pcr/m/n/9 band(sm5, -1, 1)# "dsyMatrix": symmetric band preserves sym metry property[] [2384] Underfull \hbox (badness 5119) in paragraph at lines 492--496 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class Underfull \hbox (badness 1668) in paragraph at lines 496--501 [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string, one of []\T1/pcr/ m/n/10 "C"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 , or []\T1/pc r/m/n/10 "R"[]\T1/ptm/m/n/10 , spec-i-fy-ing the sparse Overfull \hbox (4.38043pt too wide) in paragraph at lines 527--527 []\T1/pcr/m/n/9 s1 <- bandSparse(13, k = -c(0:2, 6), diag = c(diags, diags[2]) , symm=TRUE)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 529--529 []\T1/pcr/m/n/9 s2 <- bandSparse(13, k = c(0:2, 6), diag = c(diags, diags[2]) , symm=TRUE)[] [2385] Overfull \hbox (36.7804pt too wide) in paragraph at lines 538--538 []\T1/pcr/m/n/9 lLis <- lapply(list(rpois(20, 2), rpois(20, 1), rpois(20, 3))[ c(1:3, 2:3, 3:2)],[] [2386] Overfull \hbox (52.98038pt too wide) in paragraph at lines 654--654 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 Fast version of Matrix :: .bd iag() -- for the case of *many* (k x k) matrices:[] [2387] Overfull \hbox (96.18033pt too wide) in paragraph at lines 655--655 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 @param lmat list(, , ....., ) where each mat_j is a k x k \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 matrix\TS1/pcr/m/n/9 '[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 656--656 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 @return a sparse (N*k x N*k) matrix of class \code{"\linkS4class{dgCMatrix}"}.[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 669--669 [] \T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 i :\TS1/pcr/m/n/9 ' \ T1/pcr/m/n/9 maybe there\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s a faster way (w/o matri x indexing), but elegant?[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 670--670 [] \T1/pcr/m/n/9 i = as.vector(matrix(0L:(M-1L), nrow=k)[, rep(seq_len( N), each=k)]),[] [2388] Overfull \hbox (9.78043pt too wide) in paragraph at lines 837--837 []\T1/pcr/m/n/9 L. <- L; L.[1:2,1] <- TRUE; L.@x[1:2] <- FALSE; L. # has "zero s" to drop0()[] [2389] Underfull \hbox (badness 1635) in paragraph at lines 919--924 []\T1/pcr/m/n/10 new("pBunchKaufman", ...)[]\T1/ptm/m/n/10 , but they are more typ-i-cally ob-tained as the value of Underfull \hbox (badness 10000) in paragraph at lines 929--932 []\T1/pcr/m/n/10 signature(from = "BunchKaufman", to = "dtrMatrix")[]\T1/ptm/m/ n/10 : re-turns a Underfull \hbox (badness 10000) in paragraph at lines 932--935 []\T1/pcr/m/n/10 signature(from = "pBunchKaufman", to = "dtpMatrix")[]\T1/ptm/m /n/10 : re-turns a Underfull \hbox (badness 10000) in paragraph at lines 935--938 []\T1/pcr/m/n/10 signature(from = "p?BunchKaufman", logarithm = [2390] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1008--1008 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m atrix"), ...)[] [2391] Underfull \hbox (badness 10000) in paragraph at lines 1081--1086 []\T1/ptm/m/n/10 An ob-ject rep-re-sent-ing the fac-tor-iza-tion, in-her-it-ing from vir-tual class [2392] Overfull \hbox (3.02814pt too wide) in paragraph at lines 1137--1137 []\T1/pcr/m/n/9 stopifnot(all.equal(as(A, "matrix"), as(Reduce(\TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 %*%\TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 , e.bk.A), "matrix")))[] [2393]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.cbi nd2.Rdash.methods}) has been already used, duplicate ignored \relax l.1185 ... on cbind2/rbind2}{cbind2.Rdash.methods} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.cbind2}) has been already used, duplic ate ignored \relax l.1186 \aliasA{cbind2}{cbind2-methods}{cbind2} pdfTeX warning (ext4): destinatio n with the same identifier (name{Rfn.rbind2}) has been already used, duplicate ignored \relax l.1195 \aliasA{rbind2}{cbind2-methods}{rbind2} pdfTeX warning (ext4): destinatio n with the same identifier (name{Rfn.rbind2.Rdash.methods}) has been already us ed, duplicate ignored \relax l.1204 ...s}{cbind2-methods}{rbind2.Rdash.methods} [2394] Underfull \hbox (badness 10000) in paragraph at lines 1267--1272 []\T1/ptm/m/n/10 Our class def-i-ni-tion help pages men-tion-ing []\T1/pcr/m/n/ 10 cbind2() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 rbind2() []\T1/ptm/m/n/10 met h-ods: Underfull \hbox (badness 10000) in paragraph at lines 1322--1329 []\T1/ptm/m/n/10 The im-ple-men-ta-tion of class []\T1/pcr/m/n/10 CHMfactor []\ T1/ptm/m/n/10 is based on CHOLMOD's C-level [2395] [2396] Underfull \hbox (badness 5008) in paragraph at lines 1484--1499 []\T1/pcr/m/n/10 signature(from = "CHMfactor", logarithm = "logical")[]\T1/ptm/ m/n/10 : be- [2397] Underfull \hbox (badness 10000) in paragraph at lines 1534--1536 []\T1/pcr/m/n/10 signature(update = ., C = ., object = "CHMfactor")[]\T1/ptm/m/ n/10 : see Underfull \hbox (badness 1917) in paragraph at lines 1542--1546 []\T1/ptm/m/n/10 The CHOLMOD source code; see [][]$\T1/pcr/m/n/10 https : / / g ithub . com / DrTimothyAldenDavis / Underfull \hbox (badness 8132) in paragraph at lines 1542--1546 \T1/pcr/m/n/10 SuiteSparse$[][]\T1/ptm/m/n/10 , no-tably the header file `\T1/p cr/m/n/10 CHOLMOD/Include/cholmod.h\T1/ptm/m/n/10 ' defin-ing [2398] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1592--1592 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m atrix"), ...)[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1600--1600 [] \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list( NULL), dn[2L]),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1609--1609 [] \T1/pcr/m/n/9 ae2(A[ch.A@perm + 1L, ch.A@perm + 1L], with(e.ch.A, L1 %*% D %*% L1.))[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1610--1610 [] \T1/pcr/m/n/9 ae2(A[ch.A@perm + 1L, ch.A@perm + 1L], with(E.ch.A, L %*% L. ))[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1620--1620 []\T1/pcr/m/n/9 u2 <- update(ch.A, t(M), mult = sqrt(2)) # updating with cross prod(M), not M[] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol}) ha s been already used, duplicate ignored \relax l.1625 \aliasA{chol}{chol-methods}{chol} [2399] Underfull \hbox (badness 10000) in paragraph at lines 1730--1734 \T1/pcr/m/n/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 htt ps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and Underfull \hbox (badness 1917) in paragraph at lines 1735--1739 []\T1/ptm/m/n/10 The CHOLMOD source code; see [][]$\T1/pcr/m/n/10 https : / / g ithub . com / DrTimothyAldenDavis / Underfull \hbox (badness 8132) in paragraph at lines 1735--1739 \T1/pcr/m/n/10 SuiteSparse$[][]\T1/ptm/m/n/10 , no-tably the header file `\T1/p cr/m/n/10 CHOLMOD/Include/cholmod.h\T1/ptm/m/n/10 ' defin-ing [2400] [2401]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.chol2inv}) has been already used, duplicate ignored \relax l.1854 ...sA{chol2inv}{chol2inv-methods}{chol2inv} [2402] [2403] Underfull \hbox (badness 1931) in paragraph at lines 1990--1995 []\T1/ptm/m/n/10 a nu-meric vec-tor of length []\T1/pcr/m/n/10 n*n []\T1/ptm/m/ n/10 ([]\T1/pcr/m/n/10 Cholesky[]\T1/ptm/m/n/10 ) or []\T1/pcr/m/n/10 n*(n+1)/2 []\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 pCholesky[]\T1/ptm/m/n/10 ), where Underfull \hbox (badness 1226) in paragraph at lines 2005--2008 []\T1/ptm/m/n/10 Class [][][]\T1/pcr/m/n/10 CholeskyFactorization[][][][]\T1/pt m/m/n/10 , di-rectly. Class [][][]\T1/pcr/m/n/10 MatrixFactorization[][][][]\T1 /ptm/m/n/10 , by class Underfull \hbox (badness 3000) in paragraph at lines 2011--2019 []\T1/ptm/m/n/10 Objects can be gen-er-ated di-rectly by calls of the form []\T 1/pcr/m/n/10 new("Cholesky", ...) []\T1/ptm/m/n/10 or Underfull \hbox (badness 10000) in paragraph at lines 2028--2032 []\T1/pcr/m/n/10 signature(from = "pCholesky", to = "dtpMatrix")[]\T1/ptm/m/n/1 0 : re-turns a Underfull \hbox (badness 10000) in paragraph at lines 2032--2035 []\T1/pcr/m/n/10 signature(from = "p?Cholesky", logarithm = "logical")[]\T1/ptm /m/n/10 : [2404] Underfull \hbox (badness 10000) in paragraph at lines 2066--2070 \T1/pcr/m/n/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 htt ps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and [2405] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2113--2113 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m atrix"), ...)[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 2121--2121 [] \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list( NULL), dn[2L]),[] [2406] Underfull \hbox (badness 10000) in paragraph at lines 2252--2259 []\T1/ptm/m/n/10 a [][]fi-nite[][][] num-ber. The ma-trix that is fac-tor-ized is []\T1/pcr/m/n/10 A + Imult * Underfull \hbox (badness 1946) in paragraph at lines 2252--2259 \T1/pcr/m/n/10 - diag(abs(A))) []\T1/ptm/m/n/10 en-sures that []\T1/pcr/m/n/10 A + Imult * diag(nrow(A)) []\T1/ptm/m/n/10 is di- [2407] Underfull \hbox (badness 10000) in paragraph at lines 2299--2312 []\T1/ptm/m/n/10 An ob-ject rep-re-sent-ing the fac-tor-iza-tion, in-her-it-ing from vir-tual class Underfull \hbox (badness 10000) in paragraph at lines 2315--2319 \T1/pcr/m/n/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 htt ps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and Underfull \hbox (badness 1917) in paragraph at lines 2320--2324 []\T1/ptm/m/n/10 The CHOLMOD source code; see [][]$\T1/pcr/m/n/10 https : / / g ithub . com / DrTimothyAldenDavis / Underfull \hbox (badness 8132) in paragraph at lines 2320--2324 \T1/pcr/m/n/10 SuiteSparse$[][]\T1/ptm/m/n/10 , no-tably the header file `\T1/p cr/m/n/10 CHOLMOD/Include/cholmod.h\T1/ptm/m/n/10 ' defin-ing [2408] [2409] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2437--2437 [] \T1/pcr/m/n/9 list(simpl1 = Cholesky(A4, perm = TRUE, super = FALSE, L DL = TRUE),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2438--2438 [] \T1/pcr/m/n/9 simpl0 = Cholesky(A4, perm = TRUE, super = FALSE, L DL = FALSE),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2439--2439 [] \T1/pcr/m/n/9 super0 = Cholesky(A4, perm = TRUE, super = TRUE )),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2441--2441 [] \T1/pcr/m/n/9 list(simpl1 = Cholesky(A4, perm = FALSE, super = FALSE, L DL = TRUE),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2442--2442 [] \T1/pcr/m/n/9 simpl0 = Cholesky(A4, perm = FALSE, super = FALSE, L DL = FALSE),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2443--2443 [] \T1/pcr/m/n/9 super0 = Cholesky(A4, perm = FALSE, super = TRUE )))[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 2447--2447 []\T1/pcr/m/n/9 rapply2 <- function(object, f, ...) rapply(object, f, , , how = "list", ...)[] Underfull \vbox (badness 10000) has occurred while \output is active [2410] Overfull \hbox (42.18039pt too wide) in paragraph at lines 2514--2514 [] \T1/pcr/m/n/9 x = c(1, 6, 38, 10, 60, 103, -4, 6, -32, -247, -2, - 16, -128, -2, -67))[] Underfull \vbox (badness 10000) has occurred while \output is active [2411] Overfull \hbox (20.58041pt too wide) in paragraph at lines 2610--2610 [] \T1/pcr/m/n/9 show(a1 <- sparseMatrix(i= c(1:4), j=c(2:4,1), x = 2, dimnames=dns))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 2614--2614 [] \T1/pcr/m/n/9 show(a2 <- sparseMatrix(i= c(1:4,4), j=c(2:4,1:2), x = TRUE, dimnames=dns))[] [2412] Overfull \hbox (15.18042pt too wide) in paragraph at lines 2621--2621 [] \T1/pcr/m/n/9 a. <- sparseMatrix(i=4:1, j=1:4, dimnames=list(n4, n4), repr ="T") # no \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 x\TS1/pcr/m/n/9 '[] [2413]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col Means}) has been already used, duplicate ignored \relax l.2696 ...asA{colMeans}{colSums-methods}{colMeans} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colSums}) has been already used, dupli cate ignored \relax l.2704 \aliasA{colSums}{colSums-methods}{colSums} pdfTeX warning (ext4): destina tion with the same identifier (name{Rfn.rowMeans}) has been already used, dupli cate ignored \relax l.2711 ...asA{rowMeans}{colSums-methods}{rowMeans} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.rowSums}) has been already used, dupli cate ignored \relax l.2719 \aliasA{rowSums}{colSums-methods}{rowSums} Underfull \hbox (badness 2922) in paragraph at lines 2771--2775 []\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sparse, i.e., i n-her-it-ing from Underfull \hbox (badness 1728) in paragraph at lines 2771--2775 \T1/ptm/m/n/10 class [][][]\T1/pcr/m/n/10 sparseVector[][][][]\T1/ptm/m/n/10 . Only ap-pli-ca-ble when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 is in-her-it-ing fr om a Underfull \hbox (badness 1237) in paragraph at lines 2782--2785 [][][]\T1/pcr/m/n/10 dimnames[][][](x) []\T1/ptm/m/n/10 are only kept (as [][][ ]\T1/pcr/m/n/10 names[][][](v)[]\T1/ptm/m/n/10 ) when the re-sult-ing []\T1/pcr /m/n/10 v []\T1/ptm/m/n/10 is [][][]\T1/pcr/m/n/10 numeric[][][][]\T1/ptm/m/n/1 0 , since [2414] [2415] Underfull \hbox (badness 3547) in paragraph at lines 2888--2891 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2416] [2417] [2418] [2419] [2420] Underfull \hbox (badness 10000) in paragraph at lines 3290--3293 []\T1/pcr/m/n/10 signature(from = "denseLU", logarithm = "logical")[]\T1/ptm/m/ n/10 : com- [2421] Overfull \hbox (9.78043pt too wide) in paragraph at lines 3345--3345 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m atrix"), ...)[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 3352--3352 [] \T1/pcr/m/n/9 new( "pMatrix", Dim = c(n, n), Dimnames = c(dn[ 1L], list(NULL)),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3355--3355 [] \T1/pcr/m/n/9 new("dtrMatrix", Dim = c(n, n), Dimnames = list( NULL, NULL),[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 3358--3358 [] \T1/pcr/m/n/9 new("dtrMatrix", Dim = c(n, n), Dimnames = c(lis t(NULL), dn[2L]),[] [2422] Underfull \hbox (badness 7379) in paragraph at lines 3486--3488 []\T1/pcr/m/n/10 signature(x = "dgCMatrix")[]\T1/ptm/m/n/10 : com-putes the LU de-com-po-si-tion of a square [2423] [2424] [2425] Underfull \hbox (badness 4846) in paragraph at lines 3707--3711 []\T1/ptm/m/n/10 Note that both []\T1/pcr/m/n/10 new(.) []\T1/ptm/m/n/10 and [] [][]\T1/pcr/m/n/10 spMatrix[][][] []\T1/ptm/m/n/10 con-struc-tors for []\T1/pcr /m/n/10 "dgTMatrix" []\T1/ptm/m/n/10 (and other Underfull \hbox (badness 2717) in paragraph at lines 3712--3716 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in more than one pos-si-ble [2426] Underfull \hbox (badness 5231) in paragraph at lines 3757--3762 []\T1/ptm/m/n/10 Construct a for-mally di-ag-o-nal [][][]\T1/pcr/m/n/10 Matrix[ ][][][]\T1/ptm/m/n/10 , i.e., an ob-ject in-her-it-ing from vir-tual class Overfull \hbox (84.78088pt too wide) in paragraph at lines 3768--3768 []\T1/pcr/m/n/10 .sparseDiagonal(n, x = NULL, uplo = "U", shape = "t", unitri = TRUE, kind, cols)[] [2427] Underfull \hbox (badness 10000) in paragraph at lines 3824--3827 []\T1/pcr/m/n/10 .trDiagonal() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 .symDiagon al() []\T1/ptm/m/n/10 are sim-ple wrap-pers, for Underfull \hbox (badness 6792) in paragraph at lines 3824--3827 []\T1/pcr/m/n/10 .sparseDiagonal(shape = "t") []\T1/ptm/m/n/10 and []\T1/pcr/m/ n/10 .sparseDiagonal(shape = "s")[]\T1/ptm/m/n/10 , re-spec- [2428] Underfull \hbox (badness 3646) in paragraph at lines 3901--3904 []\T1/ptm/m/n/10 the [][][]\T1/pcr/m/n/10 dimnames[][][][]\T1/ptm/m/n/10 , a [] [][]\T1/pcr/m/n/10 list[][][][]\T1/ptm/m/n/10 , see the [][][]\T1/pcr/m/n/10 Ma trix[][][] []\T1/ptm/m/n/10 class de-scrip-tion. Typ-i-cally Underfull \hbox (badness 6542) in paragraph at lines 3936--3940 []\T1/pcr/m/n/10 signature(x = "diagonalMatrix")[]\T1/ptm/m/n/10 : all these gr oup meth-ods re-turn a Underfull \hbox (badness 4518) in paragraph at lines 3945--3951 []\T1/pcr/m/n/10 signature(e1 = "ddiMatrix", e2="denseMatrix")[]\T1/ptm/m/n/10 : the re-sult is from class [2429] Underfull \hbox (badness 10000) in paragraph at lines 3952--3956 []\T1/pcr/m/n/10 (object = "diagonalMatrix")[]\T1/ptm/m/n/10 : Re-turns an ob-j ect of S3 class Underfull \hbox (badness 2318) in paragraph at lines 3962--3966 [][][]\T1/pcr/m/n/10 Diagonal[][][]() []\T1/ptm/m/n/10 as con-struc-tor of thes e ma-tri-ces, and [][][]\T1/pcr/m/n/10 isDiagonal[][][][]\T1/ptm/m/n/10 . [][][ ]\T1/pcr/m/n/10 ddiMatrix[][][] []\T1/ptm/m/n/10 and [2430] [2431] [2432] Underfull \hbox (badness 10000) in paragraph at lines 4219--4221 []\T1/pcr/m/n/10 signature(x = "dMatrix", digits = "numeric")[]\T1/ptm/m/n/10 : this group con-tains [2433] [2434] Overfull \hbox (69.18036pt too wide) in paragraph at lines 4360--4360 []\T1/pcr/m/n/9 stopifnot(all.equal(S9p0, S9p))# same as as default, but diffe rent from the random one[] [2435] Underfull \hbox (badness 2469) in paragraph at lines 4474--4477 []\T1/pcr/m/n/10 signature(x = "dpoMatrix")[]\T1/ptm/m/n/10 : Re-turns the [][] []\T1/pcr/m/n/10 determinant[][][] []\T1/ptm/m/n/10 of []\T1/pcr/m/n/10 x[]\T1/ ptm/m/n/10 , via [2436] Underfull \hbox (badness 10000) in paragraph at lines 4497--4502 []\T1/ptm/m/n/10 Currently the va-lid-ity meth-ods for these classes such as Underfull \hbox (badness 2020) in paragraph at lines 4497--4502 [][][]\T1/pcr/m/n/10 getValidity[][][](getClass("dpoMatrix")) []\T1/ptm/m/n/10 for ef-fi-ciency rea-sons only check the di- Underfull \hbox (badness 1748) in paragraph at lines 4503--4512 \T1/pcr/m/n/10 error=identity), "error") []\T1/ptm/m/n/10 . In-deed, when \T1/p tm/m/it/10 co-erc-ing \T1/ptm/m/n/10 to these classes, a ver-sion Underfull \hbox (badness 1590) in paragraph at lines 4503--4512 \T1/ptm/m/n/10 of [][][]\T1/pcr/m/n/10 Cholesky[][][]() []\T1/ptm/m/n/10 or [][ ][]\T1/pcr/m/n/10 chol[][][]() []\T1/ptm/m/n/10 is typ-i-cally used, e.g., see []\T1/pcr/m/n/10 selectMethod("coerce", Underfull \hbox (badness 6675) in paragraph at lines 4559--4566 []\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 Matrix[][][][]\T1/ptm/m/n/10 , typ-i-ca lly in-her-it-ing from vir-tual class [][][]\T1/pcr/m/n/10 sparseMatrix[][][][] \T1/ptm/m/n/10 . Underfull \hbox (badness 6493) in paragraph at lines 4559--4566 [][][]\T1/pcr/m/n/10 denseMatrix[][][] []\T1/ptm/m/n/10 and tra-di-tional vec-t ors and ma-tri-ces are co-erced to [2437] Underfull \hbox (badness 10000) in paragraph at lines 4574--4582 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing if the re-sult must in-herit from vi r-tual class Underfull \hbox (badness 1365) in paragraph at lines 4574--4582 [][][]\T1/pcr/m/n/10 CsparseMatrix[][][][]\T1/ptm/m/n/10 . If []\T1/pcr/m/n/10 FALSE []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 in-her-its from [][][]\T1/pcr/m/n/10 RsparseMatrix[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4597--4600 []\T1/ptm/m/n/10 Function [][][]\T1/pcr/m/n/10 sparseMatrix[][][][]\T1/ptm/m/n/ 10 , for con-struct-ing ob-jects in-her-it-ing from vir-tual class [2438] Underfull \hbox (badness 10000) in paragraph at lines 4641--4645 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form []\T1/pcr/m/n/10 new("dsCMatrix", ...) []\T1/ptm/m/n/10 or Underfull \hbox (badness 2103) in paragraph at lines 4641--4645 []\T1/pcr/m/n/10 new("dsTMatrix", ...)[]\T1/ptm/m/n/10 , or au-to-mat-i-cally v ia e.g., []\T1/pcr/m/n/10 as(*, "symmetricMatrix")[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1571) in paragraph at lines 4691--4694 []\T1/pcr/m/n/10 signature(x = "dsCMatrix", pivot = "logical")[]\T1/ptm/m/n/10 : Re-turns (and stores) the [2439] [2440] Underfull \hbox (badness 1221) in paragraph at lines 4834--4837 []\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "dMatrix"[]\T1/ptm/m/n/10 , by class [] \T1/pcr/m/n/10 "dsparseMatrix"[]\T1/ptm/m/n/10 ; class []\T1/pcr/m/n/10 "sparse Matrix"[]\T1/ptm/m/n/10 , by classes Underfull \hbox (badness 1400) in paragraph at lines 4844--4847 []\T1/pcr/m/n/10 signature(x = "dsRMatrix", uplo = "character")[]\T1/ptm/m/n/10 : if []\T1/pcr/m/n/10 uplo == [2441] Underfull \hbox (badness 10000) in paragraph at lines 4896--4898 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form []\T1/pcr/m/n/10 new("dsyMatrix", ...) []\T1/ptm/m/n/10 or Underfull \hbox (badness 1365) in paragraph at lines 4932--4935 []\T1/pcr/m/n/10 signature(x = "dspMatrix", type = "character")[]\T1/ptm/m/n/10 , or []\T1/pcr/m/n/10 x = "dsyMatrix" [2442] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4978--4978 []\T1/pcr/m/n/9 stopifnot(all(S1 == S2)) # equal "seen as matrix", but differ internally :[] [2443] [2444] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5084--5084 []\T1/pcr/m/n/9 U5 <- new("dtCMatrix", i= c(1L, 0:3), p=c(0L,0L,0:2, 5L), Dim = c(5L, 5L),[] Underfull \hbox (badness 3635) in paragraph at lines 5139--5143 []\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ddenseMatrix"[]\T1/ptm/m/n/10 , di-rec tly. Class []\T1/pcr/m/n/10 "triangularMatrix"[]\T1/ptm/m/n/10 , di-rectly. Cla ss Underfull \hbox (badness 10000) in paragraph at lines 5148--5151 []\T1/pcr/m/n/10 signature(x = "dtpMatrix", y = "dgeMatrix")[]\T1/ptm/m/n/10 : Ma-trix mul-ti-pli-ca-tion; Underfull \hbox (badness 10000) in paragraph at lines 5151--5155 []\T1/pcr/m/n/10 signature(x = "dtpMatrix", logarithm = "logical")[]\T1/ptm/m/n /10 : the [2445] [2446] [2447] [2448] Underfull \hbox (badness 10000) in paragraph at lines 5399--5401 []\T1/ptm/m/n/10 a ma-trix fac-tor-iza-tion, typ-i-cally in-her-it-ing from vir -tual class Overfull \hbox (29.27832pt too wide) in paragraph at lines 5418--5418 [] \T1/pcr/m/n/10 all.equal(as(x, "matrix"), as(Reduce(\TS1/cmtt/m/n/10 `\T 1/pcr/m/n/10 %*%\TS1/cmtt/m/n/10 `\T1/pcr/m/n/10 , expand2(y)), "matrix")) Overfull \hbox (37.71342pt too wide) in alignment at lines 5449--5449 [] [] [2449] Underfull \hbox (badness 7064) in paragraph at lines 5477--5494 []\T1/pcr/m/n/10 signature(x = "p?BunchKaufman")[]\T1/ptm/m/n/10 : ex-pands the fac-tor-iza-tion $\OML/cmm/m/it/10 A \OT1/cmr/m/n/10 = Underfull \hbox (badness 3000) in paragraph at lines 5506--5513 []\T1/pcr/m/n/10 signature(x = "denseLU")[]\T1/ptm/m/n/10 : ex-pands the fac-to r-iza-tion $\OML/cmm/m/it/10 A \OT1/cmr/m/n/10 = \OML/cmm/m/it/10 P[]LU$ \T1/pt m/m/n/10 as Underfull \hbox (badness 2735) in paragraph at lines 5522--5529 []\T1/pcr/m/n/10 signature(x = "CHMfactor")[]\T1/ptm/m/n/10 : as []\T1/pcr/m/n/ 10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/pcr/m/n/10 list(P, L)[]\T1/p tm/m/n/10 . Underfull \hbox (badness 1337) in paragraph at lines 5529--5544 []\T1/pcr/m/n/10 signature(x = "sparseLU")[]\T1/ptm/m/n/10 : as []\T1/pcr/m/n/1 0 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/pcr/m/n/10 list(P, L, U, Underfull \hbox (badness 2680) in paragraph at lines 5529--5544 \T1/pcr/m/n/10 Q)[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 expand(x)[["Q"]] []\T1/ptm /m/n/10 and []\T1/pcr/m/n/10 expand2(x)[["P2."]] []\T1/ptm/m/n/10 rep-re-sent t he same per- Underfull \hbox (badness 5374) in paragraph at lines 5529--5544 \T1/ptm/m/n/10 mu-ta-tion ma-trix $\OML/cmm/m/it/10 P[]$ \T1/ptm/m/n/10 but hav e op-po-site []\T1/pcr/m/n/10 margin []\T1/ptm/m/n/10 slots and in-verted []\T1 /pcr/m/n/10 perm []\T1/ptm/m/n/10 slots. Underfull \hbox (badness 2073) in paragraph at lines 5544--5549 []\T1/pcr/m/n/10 signature(x = "denseLU")[]\T1/ptm/m/n/10 : as []\T1/pcr/m/n/10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/pcr/m/n/10 list(L, U, P)[]\T1/ ptm/m/n/10 . [2450] [2451] [2452] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5752--5752 []\T1/pcr/m/n/9 str(pores <- readMM(system.file("external/pores_1.mtx", packag e = "Matrix")))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5753--5753 []\T1/pcr/m/n/9 str(utm <- readHB(system.file("external/utm300.rua" , packag e = "Matrix")))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5754--5754 []\T1/pcr/m/n/9 str(lundA <- readMM(system.file("external/lund_a.mtx" , packag e = "Matrix")))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5755--5755 []\T1/pcr/m/n/9 str(lundA <- readHB(system.file("external/lund_a.rsa" , packag e = "Matrix")))[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 5756--5756 []\T1/pcr/m/n/9 ## https://math.nist.gov/MatrixMarket/data/Harwell-Boeing/coun terx/counterx.htm[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5757--5757 []\T1/pcr/m/n/9 str(jgl <- readMM(system.file("external/jgl009.mtx" , packag e = "Matrix")))[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 5763--5763 []\T1/pcr/m/n/9 u. <- url("https://www.cise.ufl.edu/research/sparse/RB/Boeing/ msc00726.tar.gz")[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5768--5768 []\T1/pcr/m/n/9 ## Store as MatrixMarket (".mtx") file, here inside temporary dir./folder:[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5771--5771 []\T1/pcr/m/n/9 file.info(MMfile)[,c("size", "ctime")] # (some confirmation of the file\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s)[] [2453] Overfull \hbox (58.38037pt too wide) in paragraph at lines 5781--5781 []\T1/pcr/m/n/9 ## has columns (i, j, x) -> we can use via do.call() as argume nts to sparseMatrix():[] [2454] Overfull \hbox (25.98041pt too wide) in paragraph at lines 5843--5843 [] \T1/pcr/m/n/9 all.equal(facmul(x, nm, y, trans = TRUE, left = TRUE), crossprod(L, y))[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 5844--5844 [] \T1/pcr/m/n/9 all.equal(facmul(x, nm, y, trans = TRUE, left = FALSE), t crossprod(y, L))[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 5923--5923 []\T1/pcr/m/n/10 .diag2dense(from, kind = ".", shape = "t", packed = FALSE, up lo = "U")[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 5925--5925 []\T1/pcr/m/n/10 .m2dense(from, class = ".ge", uplo = "U", diag = "N", trans = FALSE)[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 5928--5928 []\T1/pcr/m/n/10 .diag2sparse(from, kind = ".", shape = "t", repr = "C", uplo = "U")[] [2455] Overfull \hbox (18.78088pt too wide) in paragraph at lines 5930--5930 []\T1/pcr/m/n/10 .m2sparse(from, class = ".gC", uplo = "U", diag = "N", trans = FALSE)[] Underfull \hbox (badness 10000) in paragraph at lines 6000--6002 []\T1/ptm/m/n/10 a string in []\T1/pcr/m/n/10 c("trace", "sumLog", "prod", "min ", "max", [2456] Underfull \hbox (badness 10000) in paragraph at lines 6073--6079 [][]\T1/pcr/m/n/10 .solve.dgC.*(a, b)[]\T1/ptm/b/n/10 : []\T1/pcr/m/n/10 .solv e.dgC.lu(a, b) []\T1/ptm/m/n/10 needs a square ma-trix []\T1/pcr/m/n/10 a[]\T1/ ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 6073--6079 []\T1/pcr/m/n/10 .solve.dgC.qr(a, b) []\T1/ptm/m/n/10 needs a ``long'' ma-trix []\T1/pcr/m/n/10 a[]\T1/ptm/m/n/10 , with []\T1/pcr/m/n/10 nrow(a) >= ncol(a)[] \T1/ptm/m/n/10 . [2457] Underfull \hbox (badness 10000) in paragraph at lines 6087--6096 [][]\T1/pcr/m/n/10 .updateCHMfactor(object, parent, mult)[]\T1/ptm/b/n/10 : [] \T1/pcr/m/n/10 .updateCHMfactor []\T1/ptm/m/n/10 up- Underfull \hbox (badness 10000) in paragraph at lines 6087--6096 \T1/ptm/m/n/10 dates []\T1/pcr/m/n/10 object []\T1/ptm/m/n/10 with the re-sult of Cholesky fac-tor-iz-ing []\T1/pcr/m/n/10 F(parent) + mult[1] * Underfull \hbox (badness 2443) in paragraph at lines 6087--6096 \T1/pcr/m/n/10 diag(nrow(parent))[]\T1/ptm/m/n/10 , i.e., []\T1/pcr/m/n/10 F(pa rent) []\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 mult[1] []\T1/ptm/m/n/10 times the iden-tity ma-trix, [2458] [2459] [2460] [2461]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.image}) has been already used, duplicate ignored \relax l.6399 \aliasA{image}{image-methods}{image} [2462] [2463] Underfull \hbox (badness 4120) in paragraph at lines 6495--6498 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ][]\T1/pcr/m/n/10 dgTMatrix[][][] []\T1/ptm/m/n/10 class. Use Overfull \hbox (47.58038pt too wide) in paragraph at lines 6514--6514 []\T1/pcr/m/n/9 stopifnot(!is.null(leg <- imgC$legend), is.list(leg$right)) # failed for 2 days ..[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6534--6534 []\T1/pcr/m/n/9 ## Using (xlim,ylim) has advantage : matrix dimension and (col /row) indices:[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 6540--6540 [] \T1/pcr/m/n/9 I2 <- image(USCounties, c(1,100), c(1,100), useAbs=FALSE, border.col=NA)[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 6541--6541 [] \T1/pcr/m/n/9 I3 <- image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd =2, border.col=NA)[] Overfull \hbox (144.78027pt too wide) in paragraph at lines 6545--6545 []\T1/pcr/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor der.col = adjustcolor("skyblue", 1/2))[] [2464] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6553--6553 []\T1/pcr/m/n/9 image(USCounties, useRaster = TRUE) # should not suffer from a nti-aliasing[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 6556--6556 [] \T1/pcr/m/n/9 ## and now look at the *.png image in a viewer you can easi ly zoom in and out[] [2465] Underfull \hbox (badness 10000) in paragraph at lines 6684--6687 []\T1/pcr/m/n/10 signature(x = "indMatrix", y = "Matrix") []\T1/ptm/m/n/10 and oth-ers listed by Underfull \hbox (badness 1286) in paragraph at lines 6684--6687 []\T1/pcr/m/n/10 showMethods("%*%", classes = "indMatrix")[]\T1/ptm/m/n/10 : ma -trix prod-ucts im-ple-mented Underfull \hbox (badness 10000) in paragraph at lines 6687--6690 []\T1/pcr/m/n/10 signature(from = "numeric", to = "indMatrix")[]\T1/ptm/m/n/10 : sup-port-ing typ-i-cal Underfull \hbox (badness 3375) in paragraph at lines 6690--6695 []\T1/pcr/m/n/10 signature(from = "list", to = "indMatrix")[]\T1/ptm/m/n/10 : s up-port-ing []\T1/pcr/m/n/10 indMatrix Underfull \hbox (badness 4156) in paragraph at lines 6701--6703 []\T1/pcr/m/n/10 signature(x = "indMatrix")[]\T1/ptm/m/n/10 : row and Underfull \hbox (badness 1337) in paragraph at lines 6707--6711 []\T1/pcr/m/n/10 signature(X = "indMatrix", Y = "indMatrix")[]\T1/ptm/m/n/10 : Kro-necker prod-uct of [2466] Underfull \hbox (badness 1776) in paragraph at lines 6717--6726 []\T1/ptm/m/n/10 Fabian Scheipl at `\T1/pcr/m/n/10 uni-muenchen.de\T1/ptm/m/n/1 0 ', build-ing on the ex-ist-ing class [][][]\T1/pcr/m/n/10 pMatrix[][][] []\T1 /ptm/m/n/10 af-ter Underfull \hbox (badness 1253) in paragraph at lines 6717--6726 \T1/ptm/m/n/10 a nice hike's con-ver-sa-tion with Mar-tin Maech-ler. Meth-ods f or [][][]\T1/pcr/m/n/10 crossprod[][][](x, y) []\T1/ptm/m/n/10 and [2467] Underfull \hbox (badness 1509) in paragraph at lines 6810--6812 []\T1/ptm/m/n/10 an in-te-ger off-set, in-di-cat-ing that the re-sult should be a per-mu-ta-tion of Underfull \hbox (badness 10000) in paragraph at lines 6837--6841 []\T1/pcr/m/n/10 invertPerm(p) []\T1/ptm/m/n/10 re-turns an in-te-ger vec-tor o f length []\T1/pcr/m/n/10 length(p) []\T1/ptm/m/n/10 such that Underfull \hbox (badness 4441) in paragraph at lines 6837--6841 []\T1/pcr/m/n/10 p[invertPerm(p)] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 invertP erm(p)[p] []\T1/ptm/m/n/10 are both []\T1/pcr/m/n/10 seq_along(p)[]\T1/ptm/m/n/ 10 , i.e., the [2468] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6874--6874 []\T1/pcr/m/n/9 ## Product of transpositions (1 2)(2 1)(4 3)(6 8)(10 1) = (3 4 )(6 8)(1 10)[] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.anyNA}) h as been already used, duplicate ignored \relax l.6888 \aliasA{anyNA}{is.na-methods}{anyNA} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.is.finite}) has been already used, duplicate ignored \relax l.6895 ...asA{is.finite}{is.na-methods}{is.finite} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.is.infinite}) has been already used, d uplicate ignored \relax l.6903 ...is.infinite}{is.na-methods}{is.infinite} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.is.na}) has been already used, duplica te ignored \relax l.6911 \aliasA{is.na}{is.na-methods}{is.na} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.is.nan}) has been already used, duplicate ign ored \relax l.6918 \aliasA{is.nan}{is.na-methods}{is.nan} [2469] [2470]pdfTeX warning (ext4 ): destination with the same identifier (name{Rfn.isSymmetric}) has been alread y used, duplicate ignored \relax l.7077 ...etric}{isSymmetric-methods}{isSymmetric} [2471] Overfull \hbox (138.78088pt too wide) in paragraph at lines 7124--7124 []\T1/pcr/m/n/10 isSymmetric(object, checkDN = TRUE, tol = 100 * .Machine$doub le.eps, tol1 = 8 * tol, ...)[] Overfull \hbox (42.78088pt too wide) in paragraph at lines 7126--7126 []\T1/pcr/m/n/10 isSymmetric(object, checkDN = TRUE, tol = 100 * .Machine$doub le.eps, ...)[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 7181--7181 []\T1/pcr/m/n/9 isSymmetric(as(M, "generalMatrix")) # still symmetric, even if not "formally"[] [2472] Overfull \hbox (25.98041pt too wide) in paragraph at lines 7185--7185 []\T1/pcr/m/n/9 showMethods("isSymmetric", includeDefs = TRUE) # includes S3 g eneric from base[] [2473] Overfull \hbox (31.3804pt too wide) in paragraph at lines 7268--7268 []\T1/pcr/m/n/9 isTriangular(as(M, "generalMatrix")) # still triangular, even if not "formally"[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 7295--7295 []\T1/pcr/m/n/10 KhatriRao(X, Y = X, FUN = "*", sparseY = TRUE, make.dimnames = FALSE) [2474] Overfull \hbox (15.18042pt too wide) in paragraph at lines 7371--7371 []\T1/pcr/m/n/9 stopifnot(all(K1 <- KhatriRao(nd, zm) == 0), identical(dim(K1) , c(12L, 4L)),[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 7372--7372 [] \T1/pcr/m/n/9 all(K2 <- KhatriRao(zm, nd) == 0), identical(dim(K2) , c(12L, 4L)))[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 7379--7379 [] \T1/pcr/m/n/9 identical(dimnames(KhatriRao(m, d0, make.dimnames=TRUE)), di mnames(Kmd)))[] [2475]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.kro necker}) has been already used, duplicate ignored \relax l.7453 ...kronecker}{kronecker-methods}{kronecker} [2476] Underfull \hbox (badness 1062) in paragraph at lines 7552--7555 []\T1/pcr/m/n/10 ldenseMatrix []\T1/ptm/m/n/10 is the vir-tual class of all den se \T1/ptm/b/n/10 l\T1/ptm/m/n/10 ogical (S4) ma-tri-ces. It ex-tends both [2477] Underfull \hbox (badness 6063) in paragraph at lines 7578--7581 []\T1/pcr/m/n/10 signature(x = "ndenseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2478pdfTeX warning (ext4): destination with the same identifier (name{Rfn.*,nd iMatrix,Matrix.Rdash.method}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box l.7707 crossprod(nM) # pattern sparse ] Underfull \hbox (badness 2635) in paragraph at lines 7738--7743 []\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ldenseMatrix"[]\T1/ptm/m/n/10 , di-rec tly. Class []\T1/pcr/m/n/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/ 10 "ldenseMatrix"[]\T1/ptm/m/n/10 . Underfull \hbox (badness 4229) in paragraph at lines 7738--7743 \T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "denseMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/10 "ldenseMatrix"[]\T1/ptm/m/n/10 . Class []\T1/pcr/m/n/10 "Matri x"[]\T1/ptm/m/n/10 , by class Underfull \hbox (badness 10000) in paragraph at lines 7746--7749 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n /10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/ 10 ); use, e.g., [2479] Underfull \hbox (badness 10000) in paragraph at lines 7804--7814 []\T1/pcr/m/n/10 lsTMatrix[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 ltTMatrix[]\T 1/ptm/m/n/10 ) or in com-pressed column-oriented form (class Underfull \hbox (badness 1242) in paragraph at lines 7804--7814 [][][]\T1/pcr/m/n/10 CsparseMatrix[][][][]\T1/ptm/m/n/10 , sub-classes []\T1/pc r/m/n/10 lgCMatrix[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lsCMatrix[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 ltCMatrix[]\T1/ptm/m/n/10 ) or--\T1/ptm/m/it/10 rarely\ T1/ptm/m/n/10 --in [2480] Underfull \hbox (badness 3179) in paragraph at lines 7886--7889 []\T1/pcr/m/n/10 signature(x = "lsparseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cal ly equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2481] Underfull \hbox (badness 10000) in paragraph at lines 7971--7974 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n /10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/ 10 ; use, e.g., [2482] Underfull \hbox (badness 10000) in paragraph at lines 8032--8035 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n /10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/ 10 ; use, e.g., [2483] [2484] [2485] Underfull \hbox (badness 10000) in paragraph at lines 8270--8273 []\T1/ptm/m/n/10 vector of all non-zero en-tries of []\T1/pcr/m/n/10 x[]\T1/ptm /m/n/10 ; ex-ists \T1/ptm/b/n/10 only \T1/ptm/m/n/10 when []\T1/pcr/m/n/10 as(x , Underfull \hbox (badness 1490) in paragraph at lines 8292--8294 []\T1/pcr/m/n/10 mat2triplet() []\T1/ptm/m/n/10 is con-cep-tu-ally the \T1/ptm/ m/it/10 in-verse \T1/ptm/m/n/10 func-tion of [][][]\T1/pcr/m/n/10 spMatrix[][][ ] []\T1/ptm/m/n/10 and (one case of) [2486]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp cent.*.Rpcent.}) has been already used, duplicate ignored \relax l.8313 ...*\%}{matmult-methods}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.crossprod}) has been already used, dup licate ignored \relax l.8387 ...A{crossprod}{matmult-methods}{crossprod} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du plicate ignored \relax l.8463 ...tcrossprod}{matmult-methods}{tcrossprod} Underfull \hbox (badness 1881) in paragraph at lines 8549--8555 \T1/ptm/m/n/10 ally im-ple-mented ef-fi-ciently with-out com-put-ing [][][]\T1/ pcr/m/n/10 t[][][](.)[]\T1/ptm/m/n/10 's un-nec-es-sar-ily. They also re-turn [2487] Underfull \hbox (badness 10000) in paragraph at lines 8618--8621 []\T1/pcr/m/n/10 signature(x = "dgeMatrix", y = "dgeMatrix")[]\T1/ptm/m/n/10 : Ma-trix mul-ti-pli-ca-tion; Underfull \hbox (badness 10000) in paragraph at lines 8621--8626 []\T1/pcr/m/n/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and other sig-na-tures (use Underfull \hbox (badness 3557) in paragraph at lines 8621--8626 []\T1/pcr/m/n/10 showMethods("%*%", class="dtrMatrix")[]\T1/ptm/m/n/10 ): ma-tr ix mul-ti-pli-ca-tion. Mul-ti- Underfull \hbox (badness 6608) in paragraph at lines 8626--8630 \T1/ptm/m/n/10 sig-na-tures, use []\T1/pcr/m/n/10 showMethods("crossprod", clas s = "dgeMatrix")[]\T1/ptm/m/n/10 , ma-trix Underfull \hbox (badness 1552) in paragraph at lines 8636--8637 []\T1/pcr/m/n/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and other sig-na- [2488] [2489] [2490]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det}) has been already used, duplicate ignored \relax l.8859 \aliasA{det}{Matrix-class}{det} Underfull \hbox (badness 1337) in paragraph at lines 8933--8936 []\T1/pcr/m/n/10 signature(x = "Matrix", value = "list")[]\T1/ptm/m/n/10 : set the []\T1/pcr/m/n/10 dimnames []\T1/ptm/m/n/10 to a Underfull \hbox (badness 10000) in paragraph at lines 8949--8952 Underfull \hbox (badness 10000) in paragraph at lines 8958--8960 []\T1/pcr/m/n/10 signature(from = "ANY", to = "Matrix")[]\T1/ptm/m/n/10 : This re-lies on a cor-rect [2491] [2492] [2493] Underfull \hbox (badness 10000) in paragraph at lines 9128--9132 []\T1/pcr/m/n/10 CholeskyFactorization[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Bunch KaufmanFactorization[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9151--9153 []\T1/pcr/m/n/10 signature(x = "MatrixFactorization", logarithm = Underfull \hbox (badness 10000) in paragraph at lines 9168--9171 []\T1/pcr/m/n/10 signature(obj = "MatrixFactorization")[]\T1/ptm/m/n/10 : re-tu rns []\T1/pcr/m/n/10 obj []\T1/ptm/m/n/10 with Underfull \hbox (badness 3019) in paragraph at lines 9177--9180 []\T1/ptm/m/n/10 Classes ex-tend-ing []\T1/pcr/m/n/10 CholeskyFactorization[]\T 1/ptm/m/n/10 , namely [][][]\T1/pcr/m/n/10 Cholesky[][][][]\T1/ptm/m/n/10 , [][ ][]\T1/pcr/m/n/10 pCholesky[][][][]\T1/ptm/m/n/10 , and [2494] Underfull \hbox (badness 10000) in paragraph at lines 9181--9183 []\T1/ptm/m/n/10 Classes ex-tend-ing []\T1/pcr/m/n/10 BunchKaufmanFactorization []\T1/ptm/m/n/10 , namely [][][]\T1/pcr/m/n/10 BunchKaufman[][][] []\T1/ptm/m/n /10 and Underfull \hbox (badness 10000) in paragraph at lines 9196--9199 []\T1/ptm/m/n/10 Generic func-tions [][][]\T1/pcr/m/n/10 expand1[][][] []\T1/pt m/m/n/10 and [][][]\T1/pcr/m/n/10 expand2[][][] []\T1/ptm/m/n/10 for con-struct -ing ma-trix fac-tors from Underfull \hbox (badness 1062) in paragraph at lines 9225--9228 []\T1/pcr/m/n/10 ndenseMatrix []\T1/ptm/m/n/10 is the vir-tual class of all den se \T1/ptm/b/n/10 l\T1/ptm/m/n/10 ogical (S4) ma-tri-ces. It ex-tends both Underfull \hbox (badness 6063) in paragraph at lines 9257--9260 []\T1/pcr/m/n/10 signature(x = "ndenseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2495] Underfull \hbox (badness 3312) in paragraph at lines 9314--9316 []\T1/ptm/m/n/10 logical in-di-cat-ing if []\T1/pcr/m/n/10 X <- (X + t(X))/2 [] \T1/ptm/m/n/10 should be done, af-ter []\T1/pcr/m/n/10 X <- [2496] [2497] Overfull \hbox (85.38034pt too wide) in paragraph at lines 9417--9417 [] \T1/pcr/m/n/9 all.equal(n.A.m, unname(as.matrix(n.A$mat)), tolerance = 1e -15)# seen rel.d.= 1.46e-16[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 9457--9457 []\T1/pcr/m/n/9 stopifnot(all.equal(ncr, ncF))# norm type does not matter at a ll in this example[] [2498] Underfull \hbox (badness 2635) in paragraph at lines 9510--9515 []\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ndenseMatrix"[]\T1/ptm/m/n/10 , di-rec tly. Class []\T1/pcr/m/n/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/ 10 "ndenseMatrix"[]\T1/ptm/m/n/10 . Underfull \hbox (badness 4229) in paragraph at lines 9510--9515 \T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "denseMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/10 "ndenseMatrix"[]\T1/ptm/m/n/10 . Class []\T1/pcr/m/n/10 "Matri x"[]\T1/ptm/m/n/10 , by class Underfull \hbox (badness 10000) in paragraph at lines 9518--9521 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n /10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/ 10 ); use, e.g., [2499] Underfull \hbox (badness 2521) in paragraph at lines 9586--9592 []\T1/pcr/m/n/10 signature(from = "matrix", to = "nMatrix")[]\T1/ptm/m/n/10 : N ote that these co-er-cions [2500] Underfull \hbox (badness 1867) in paragraph at lines 9699--9701 []\T1/ptm/m/n/10 fast sim- [2501]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.nor m}) has been already used, duplicate ignored \relax l.9741 \aliasA{norm}{norm-methods}{norm} [2502] Overfull \hbox (4.38043pt too wide) in paragraph at lines 9836--9836 []\T1/pcr/m/n/9 A <- sparseMatrix(i, j, x = x) ## 8 x 10 "dgCMatrix"[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 9837--9837 []\T1/pcr/m/n/9 (sA <- sparseMatrix(i, j, x = x, symmetric = TRUE)) ## 10 x 10 "dsCMatrix"[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 9838--9838 []\T1/pcr/m/n/9 (tA <- sparseMatrix(i, j, x = x, triangular= TRUE)) ## 10 x 10 "dtCMatrix"[] Underfull \hbox (badness 2401) in paragraph at lines 9883--9893 []\T1/ptm/m/n/10 These can be stored in the ``triplet'' form ([][][]\T1/pcr/m/n /10 TsparseMatrix[][][][]\T1/ptm/m/n/10 , sub-classes []\T1/pcr/m/n/10 ngTMatri x[]\T1/ptm/m/n/10 , [2503] Underfull \hbox (badness 3179) in paragraph at lines 9954--9957 []\T1/pcr/m/n/10 signature(x = "lsparseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cal ly equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2504] Underfull \hbox (badness 10000) in paragraph at lines 10034--10037 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n /10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/ 10 ; use, e.g., [2505] Underfull \hbox (badness 10000) in paragraph at lines 10098--10101 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n /10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/ 10 ; use, e.g., [2506] Underfull \hbox (badness 10000) in paragraph at lines 10172--10174 []\T1/ptm/m/n/10 typically a []\T1/pcr/m/n/10 "packedMatrix"[]\T1/ptm/m/n/10 , though [2507] [2508] [2509] Underfull \hbox (badness 10000) in paragraph at lines 10386--10389 []\T1/pcr/m/n/10 signature(x = "pMatrix", y = "Matrix") []\T1/ptm/m/n/10 and ot h-ers listed by Underfull \hbox (badness 8189) in paragraph at lines 10386--10389 []\T1/pcr/m/n/10 showMethods("%*%", classes = "pMatrix")[]\T1/ptm/m/n/10 : ma-t rix prod-ucts im-ple-mented Underfull \hbox (badness 10000) in paragraph at lines 10389--10393 []\T1/pcr/m/n/10 signature(from = "numeric", to = "pMatrix")[]\T1/ptm/m/n/10 : sup-port-ing typ-i-cal Underfull \hbox (badness 2460) in paragraph at lines 10397--10403 []\T1/pcr/m/n/10 signature(a = "pMatrix", b = "missing")[]\T1/ptm/m/n/10 : the in-verse per-mu-ta-tion ma-trix, [2510] Overfull \hbox (36.78088pt too wide) in paragraph at lines 10467--10467 [] \T1/pcr/m/n/10 col.names, note.dropping.colnames = TRUE, uniD iag = TRUE,[] Overfull \hbox (42.78088pt too wide) in paragraph at lines 10470--10470 []\T1/pcr/m/n/10 printSpMatrix(x, digits = NULL, maxp = max(100L, getOption("m ax.print")),[] Overfull \hbox (42.78088pt too wide) in paragraph at lines 10472--10472 [] \T1/pcr/m/n/10 zero.print = ".", col.names, note.dropping.coln ames = TRUE,[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 10476--10476 []\T1/pcr/m/n/10 printSpMatrix2(x, digits = NULL, maxp = max(100L, getOption(" max.print")),[] [2511] Overfull \hbox (42.78088pt too wide) in paragraph at lines 10477--10477 [] \T1/pcr/m/n/10 zero.print = ".", col.names, note.dropping.coln ames = TRUE,[] Underfull \hbox (badness 3989) in paragraph at lines 10502--10512 []\T1/ptm/m/n/10 logical or string spec-i-fy-ing if and how col-umn names of [] \T1/pcr/m/n/10 x []\T1/ptm/m/n/10 should Underfull \hbox (badness 10000) in paragraph at lines 10502--10512 \T1/ptm/m/n/10 be printed, pos-si-bly ab-bre-vi-ated. The de-fault is taken fro m [2512]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr} ) has been already used, duplicate ignored \relax l.10604 \aliasA{qr}{qr-methods}{qr} [2513] [2514] Overfull \hbox (25.98041pt too wide) in paragraph at lines 10736--10736 [] \T1/pcr/m/n/9 all.equal(qr.coef(qr.A1, b), drop(solve(crossprod(A1), cro ssprod(A1, b))))[] [2515] Overfull \hbox (9.78043pt too wide) in paragraph at lines 10752--10752 [] \T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 qr.coef\TS1/pcr/m/n/9 ' \ T1/pcr/m/n/9 computes unique least squares solution of "nearby" problem[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 10753--10753 [] \T1/pcr/m/n/9 ## Z x = b for some full rank Z ~ A, currently without war ning {FIXME} ![] Overfull \hbox (9.78043pt too wide) in paragraph at lines 10796--10796 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m atrix"), ...)[] Underfull \vbox (badness 10000) has occurred while \output is active [2516] Underfull \hbox (badness 2005) in paragraph at lines 10848--10854 []\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of [][][]\T1/pcr/m/n/10 qr[][][](x, tol, Underfull \hbox (badness 10000) in paragraph at lines 10865--10868 []\T1/ptm/m/n/10 is for back com-pat-i-bil-ity; for dense []\T1/pcr/m/n/10 x[]\ T1/ptm/m/n/10 , it cor-re-sponds to [2517] [2518] Overfull \hbox (85.38034pt too wide) in paragraph at lines 10962--10962 []\T1/pcr/m/n/9 ## The meaning of \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 tol\TS1/pcr/m/ n/9 ' \T1/pcr/m/n/9 for method="qrLINPACK" and *dense* x is not entirely "scale free"[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 10978--10978 []\T1/pcr/m/n/9 sapply(meths, function(.m.) rankMatrix(M15, method = .m., tol = 1e-7)) # all 14[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 10985--10985 []\T1/pcr/m/n/9 (st1 <- system.time(r1 <- rankMatrix(L))) # war ning+ ~1.5 sec (2013)[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 10986--10986 []\T1/pcr/m/n/9 (st2 <- system.time(r2 <- rankMatrix(L, method = "qr"))) # con siderably faster![] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rcond}) h as been already used, duplicate ignored \relax l.11005 \aliasA{rcond}{rcond-methods}{rcond} [2519] [2520] Overfull \hbox (20.58041pt too wide) in paragraph at lines 11121--11121 []\T1/pcr/m/n/9 rcond(x2 <- cbind(x1, 2:11))# practically 0, since x2 does not have full rank[] [2521] [2522] Underfull \hbox (badness 2150) in paragraph at lines 11287--11295 \T1/ptm/m/n/10 dices, if not []\T1/pcr/m/n/10 symmetric [][]sample.int[][][](nr ow*ncol, nnz)[]\T1/ptm/m/n/10 , then---if []\T1/pcr/m/n/10 rand.x []\T1/ptm/m/n /10 is not [2523] [2524] Underfull \hbox (badness 5147) in paragraph at lines 11444--11447 []\T1/ptm/m/n/10 Class [][][]\T1/pcr/m/n/10 SchurFactorization[][][][]\T1/ptm/m /n/10 , di-rectly. Class [][][]\T1/pcr/m/n/10 MatrixFactorization[][][][]\T1/pt m/m/n/10 , by class [2525] Underfull \hbox (badness 3179) in paragraph at lines 11459--11462 []\T1/pcr/m/n/10 signature(from = "Schur", logarithm = "logical")[]\T1/ptm/m/n/ 10 : com-putes [2526] [2527] Overfull \hbox (9.78043pt too wide) in paragraph at lines 11623--11623 [] \T1/pcr/m/n/9 all.equal(e1, e3[order(Mod(e3), decreasing = TRUE)], toler ance = 1e-13)[] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solve}) h as been already used, duplicate ignored \relax l.11633 \aliasA{solve}{solve-methods}{solve} [2528] Overfull \hbox (90.78088pt too wide) in paragraph at lines 11757--11757 []\T1/pcr/m/n/10 solve(a, b, system = c("A", "LDLt", "LD", "DLt", "L", "Lt", " D", "P", "Pt"), ...)[] Underfull \hbox (badness 1147) in paragraph at lines 11769--11775 []\T1/ptm/m/n/10 a vec-tor, [][][]\T1/pcr/m/n/10 sparseVector[][][][]\T1/ptm/m/ n/10 , ma-trix, or [][][]\T1/pcr/m/n/10 Matrix[][][] []\T1/ptm/m/n/10 sat-is-fy -ing []\T1/pcr/m/n/10 NROW(b) == Underfull \hbox (badness 3460) in paragraph at lines 11819--11824 []\T1/ptm/m/n/10 Methods for dense []\T1/pcr/m/n/10 a []\T1/ptm/m/n/10 are buil t on 14 LA-PACK rou-tines: class []\T1/pcr/m/n/10 d..Matrix[]\T1/ptm/m/n/10 , w here Underfull \hbox (badness 2359) in paragraph at lines 11825--11839 []\T1/ptm/m/n/10 Methods for sparse []\T1/pcr/m/n/10 a []\T1/ptm/m/n/10 are bui lt on CXS-parse rou-tines []\T1/pcr/m/n/10 cs_lsolve[]\T1/ptm/m/n/10 , []\T1/pc r/m/n/10 cs_usolve[]\T1/ptm/m/n/10 , and [2529] Overfull \hbox (52.98038pt too wide) in paragraph at lines 11892--11892 []\T1/pcr/m/n/9 image(ia0 <- solve(a, tol = 0)) # checker board, dense [but re ally, a is singular!][] Overfull \hbox (25.98041pt too wide) in paragraph at lines 11896--11896 [] \T1/pcr/m/n/9 ## Fails on 32-bit [Fedora 19, R 3.0.2] from Matrix 1.1-0 on [FIXME ??] only[] [2530] Underfull \hbox (badness 10000) in paragraph at lines 11919--11922 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu la and data frame Overfull \hbox (6.78088pt too wide) in paragraph at lines 11936--11936 [] \T1/pcr/m/n/10 drop.unused.levels = TRUE, repr = c("C", "R", "T"), giveCs parse)[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 11938--11938 [] \T1/pcr/m/n/10 drop.unused.levels = TRUE, repr = c("C", "R", "T"), giveCs parse,[] Underfull \hbox (badness 1648) in paragraph at lines 11947--11949 []\T1/ptm/m/n/10 a data frame cre-ated with [][][]\T1/pcr/m/n/10 model.frame[][ ][][]\T1/ptm/m/n/10 . If an-other sort of ob-ject, Underfull \hbox (badness 10000) in paragraph at lines 11955--11958 []\T1/ptm/m/n/10 character string or []\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or (co-er-ca-ble to) Underfull \hbox (badness 2591) in paragraph at lines 11955--11958 []\T1/pcr/m/n/10 "[][]sparseMatrix[][][]"[]\T1/ptm/m/n/10 , spec-i-fy-ing the c on-trasts to be ap-plied to the Underfull \hbox (badness 10000) in paragraph at lines 11966--11970 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for Underfull \hbox (badness 2828) in paragraph at lines 11966--11970 []\T1/pcr/m/n/10 sparse.model.matrix []\T1/ptm/m/n/10 has been changed to []\T1 /pcr/m/n/10 FALSE[]\T1/ptm/m/n/10 , 2010-07, for [2531] Underfull \hbox (badness 1668) in paragraph at lines 11981--11986 [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string, one of []\T1/pcr/ m/n/10 "C"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 , or []\T1/pc r/m/n/10 "R"[]\T1/ptm/m/n/10 , spec-i-fy-ing the sparse Underfull \hbox (badness 3291) in paragraph at lines 12008--12013 []\T1/pcr/m/n/10 model.Matrix(sparse = TRUE) []\T1/ptm/m/n/10 from pack-age [][ ]\T1/ptm/b/n/10 Ma-trix-Mod-els[][] \T1/ptm/m/n/10 may be nowa-days be Underfull \hbox (badness 2073) in paragraph at lines 12008--12013 \T1/ptm/m/n/10 prefer-able to []\T1/pcr/m/n/10 sparse.model.matrix[]\T1/ptm/m/n /10 , as []\T1/pcr/m/n/10 model.Matrix []\T1/ptm/m/n/10 re-turns an ob-ject of class [2532] Overfull \hbox (4.38043pt too wide) in paragraph at lines 12061--12061 [] \T1/pcr/m/n/9 is(M <- fac2sparse(f30, drop= TRUE),"CsparseMatrix"), dim(M) == c(0, 0),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 12062--12062 [] \T1/pcr/m/n/9 is(M <- fac2sparse(f30, drop=FALSE),"CsparseMatrix"), dim(M) == c(3, 0),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 12063--12063 [] \T1/pcr/m/n/9 is(M <- fac2sparse(f12, drop= TRUE),"CsparseMatrix"), dim(M) == c(0,12),[] [2533] Underfull \hbox (badness 2961) in paragraph at lines 12125--12128 []\T1/pcr/m/n/10 signature(from = "sparseLU", logarithm = "logical")[]\T1/ptm/m /n/10 : com- Overfull \hbox (9.78043pt too wide) in paragraph at lines 12168--12168 []\T1/pcr/m/n/9 A <- as(readMM(system.file("external", "pores_1.mtx", package = "Matrix")),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 12179--12179 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m atrix"), ...)[] [2534] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12186--12186 [] \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(dn[1L ], list(NULL)),[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12189--12189 [] \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list( NULL), dn[2L]),[] Underfull \hbox (badness 10000) in paragraph at lines 12214--12216 []\T1/ptm/m/n/10 This in-ter-face is rec-om-mended over di-rect con-struc-tion via calls such as Overfull \hbox (0.78088pt too wide) in paragraph at lines 12221--12221 [] \T1/pcr/m/n/10 symmetric = FALSE, triangular = FALSE, index1 = TRUE,[] [2535] Underfull \hbox (badness 2261) in paragraph at lines 12259--12265 \T1/ptm/m/n/10 of the sparse ma-trix re-sult, i.e., spec-i-fy-ing one of the vi r-tual classes [2536] Underfull \hbox (badness 10000) in paragraph at lines 12348--12351 []\T1/ptm/m/n/10 The stan-dard \T1/phv/m/n/10 R [][][]\T1/pcr/m/n/10 xtabs[][][ ](*, sparse=TRUE)[]\T1/ptm/m/n/10 , for sparse ta-bles and Overfull \hbox (4.38043pt too wide) in paragraph at lines 12361--12361 []\T1/pcr/m/n/9 (A <- sparseMatrix(i, j, x = x)) ## 8 x 10 "dgCMatrix"[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 12365--12365 []\T1/pcr/m/n/9 (sA <- sparseMatrix(i, j, x = x, symmetric = TRUE)) ## 10 x 10 "dsCMatrix"[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 12366--12366 []\T1/pcr/m/n/9 (tA <- sparseMatrix(i, j, x = x, triangular= TRUE)) ## 10 x 10 "dtCMatrix"[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 12371--12371 []\T1/pcr/m/n/9 (AA <- sparseMatrix(c(1,3:8), c(2,9,6:10), x = 7 * (1:7), dims = c(10,20)))[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 12374--12374 []\T1/pcr/m/n/9 ## i, j and x can be in an arbitrary order, as long as they ar e consistent[] [2537] Overfull \hbox (15.18042pt too wide) in paragraph at lines 12397--12397 []\T1/pcr/m/n/9 ## pointer vectors can be used, and the (i,x) slots are sorted if necessary:[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 12398--12398 []\T1/pcr/m/n/9 m <- sparseMatrix(i = c(3,1, 3:2, 2:1), p= c(0:2, 4,4,6), x = 1:6, dimnames = dn)[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 12424--12424 []\T1/pcr/m/n/9 ## pointers example in converting from other sparse matrix rep resentations.[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 12427--12427 [] \T1/pcr/m/n/9 nzchar(dfil <- system.file("extdata", "rua_32_ax.rua", pack age = "SparseM"))) {[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 12429--12429 [] \T1/pcr/m/n/9 XX <- sparseMatrix(j = X@ja, p = X@ia - 1L, x = X@ra, dims = X@dimension)[] [2538] Underfull \hbox (badness 6842) in paragraph at lines 12519--12522 []\T1/pcr/m/n/10 (x = "sparseMatrix", logarithm=TRUE)[]\T1/ptm/m/n/10 : [][][]\ T1/pcr/m/n/10 determinant[][][]() []\T1/ptm/m/n/10 meth-ods Underfull \hbox (badness 10000) in paragraph at lines 12554--12558 [][][]\T1/pcr/m/n/10 sparseMatrix[][][][]\T1/ptm/m/n/10 , and its ref-er-ences, such as [][][]\T1/pcr/m/n/10 xtabs[][][](*, sparse=TRUE)[]\T1/ptm/m/n/10 , or [2539] [2540] Underfull \hbox (badness 2961) in paragraph at lines 12738--12741 []\T1/pcr/m/n/10 signature(from = "sparseQR", logarithm = "logical")[]\T1/ptm/m /n/10 : com- [2541] Underfull \hbox (badness 3229) in paragraph at lines 12816--12820 []\T1/ptm/m/n/10 The many aux-il-iary func-tions for QR fac-tor-iza-tions: [][] []\T1/pcr/m/n/10 qr.Q[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 qr.R[][][][] \T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 qr.X[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc r/m/n/10 qr.coef[][][][]\T1/ptm/m/n/10 , [2542] Overfull \hbox (9.78043pt too wide) in paragraph at lines 12856--12856 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m atrix"), ...)[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12864--12864 [] \T1/pcr/m/n/9 new("pMatrix", Dim = c(m, m), Dimnames = c(dn[1L ], list(NULL)),[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12867--12867 [] \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list( NULL), dn[2L]),[] Underfull \vbox (badness 10000) has occurred while \output is active [2543] Overfull \hbox (42.18039pt too wide) in paragraph at lines 12886--12886 [] \T1/pcr/m/n/9 ae2(qrc <- qr.coef (qr.A, b), with(e.qr.A, solve(R1 %*% P 2., t(qrQ)) %*% b))[] Underfull \hbox (badness 5036) in paragraph at lines 12921--12923 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2544] Underfull \hbox (badness 2970) in paragraph at lines 13044--13050 []\T1/ptm/m/n/10 Sparse Vec-tor Classes: The vir-tual mother class []\T1/pcr/m/ n/10 "sparseVector" []\T1/ptm/m/n/10 has the five ac- Underfull \hbox (badness 3679) in paragraph at lines 13044--13050 \T1/ptm/m/n/10 tual daugh-ter classes []\T1/pcr/m/n/10 "dsparseVector"[]\T1/ptm /m/n/10 , []\T1/pcr/m/n/10 "isparseVector"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 " lsparseVector"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 13089--13092 []\T1/pcr/m/n/10 signature(x = "sparseVector", mode = "character") []\T1/ptm/m/ n/10 co-erces sparse [2545] Underfull \hbox (badness 10000) in paragraph at lines 13123--13128 []\T1/pcr/m/n/10 (x = "nsparseVector")[]\T1/ptm/m/n/10 : re-turn [][][]\T1/pcr/ m/n/10 logical[][][] []\T1/ptm/m/n/10 or Underfull \hbox (badness 10000) in paragraph at lines 13141--13143 [][][]\T1/pcr/m/n/10 sparseVector[][][]() []\T1/ptm/m/n/10 for friendly con-str uc-tion of sparse vec-tors (apart from []\T1/pcr/m/n/10 as(*, [2546] Underfull \vbox (badness 10000) has occurred while \output is active [2547] Overfull \hbox (24.78088pt too wide) in paragraph at lines 13237--13237 []\T1/pcr/m/n/10 spMatrix(nrow, ncol, i = integer(0L), j = integer(0L), x = do uble(0L)) Underfull \hbox (badness 2310) in paragraph at lines 13264--13270 [][][]\T1/pcr/m/n/10 Matrix[][][](*, sparse=TRUE) []\T1/ptm/m/n/10 for the more usual con-struc-tor of such ma-tri-ces. Then, [2548]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.[<. Rdash.}) has been already used, duplicate ignored \relax l.13316 ...\Rdash{}}{subassign-methods}{[<.Rdash.} Underfull \hbox (badness 6910) in paragraph at lines 13403--13405 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2549]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.[}) has been already used, duplicate ignored \relax l.13450 \aliasA{[}{subscript-methods}{[} [2550] Underfull \hbox (badness 2591) in paragraph at lines 13585--13590 \T1/ptm/m/n/10 Classes [][][]\T1/pcr/m/n/10 triangularMatrix[][][][]\T1/ptm/m/n /10 , and, e.g., [][][]\T1/pcr/m/n/10 dsyMatrix[][][] []\T1/ptm/m/n/10 for nu-m eric \T1/ptm/m/it/10 dense \T1/ptm/m/n/10 ma-tri-ces, or [2551] Underfull \hbox (badness 2057) in paragraph at lines 13661--13663 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., Underfull \hbox (badness 6396) in paragraph at lines 13670--13674 []\T1/pcr/m/n/10 symmpart(x) []\T1/ptm/m/n/10 re-turns a sym-met-ric ma-trix, i n-her-it-ing from [][][]\T1/pcr/m/n/10 symmetricMatrix[][][] []\T1/ptm/m/n/10 o r [2552] Underfull \hbox (badness 7722) in paragraph at lines 13675--13680 []\T1/pcr/m/n/10 skewpart(x) []\T1/ptm/m/n/10 re-turns a skew-symmetric ma-trix , in-her-it-ing from [][][]\T1/pcr/m/n/10 generalMatrix[][][][]\T1/ptm/m/n/10 , [2553] Underfull \hbox (badness 6641) in paragraph at lines 13752--13755 []\T1/ptm/m/n/10 Currently, [][][]\T1/pcr/m/n/10 Schur[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 isSymmetric[][][] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 as () []\T1/ptm/m/n/10 (i.e. [][][]\T1/pcr/m/n/10 coerce[][][][]\T1/ptm/m/n/10 ) h ave meth-ods with Underfull \hbox (badness 5133) in paragraph at lines 13788--13792 []\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 "TsparseMatrix" []\T1/ptm/m/n/10 class is the vir-tual class of all sparse ma-tri-ces coded in Underfull \hbox (badness 2818) in paragraph at lines 13788--13792 \T1/ptm/m/n/10 triplet form. Since it is a vir-tual class, no ob-jects may be c re-ated from it. See [2554] [2555] Underfull \hbox (badness 1668) in paragraph at lines 13915--13918 [][][]\T1/pcr/m/n/10 pack[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 unpac k[][][][]\T1/ptm/m/n/10 ; its vir-tual "com-ple-ment" []\T1/pcr/m/n/10 "[][]pac kedMatrix[][][]"[]\T1/ptm/m/n/10 ; its proper sub-classes [2556] Underfull \hbox (badness 10000) in paragraph at lines 14026--14032 []\T1/ptm/m/n/10 GAL lat-tice file `\T1/pcr/m/n/10 usc_q.GAL\T1/ptm/m/n/10 ' (r e-trieved in 2008 from [2557] [2558] [2559]) (./boot-pkg.tex [2560] Chapter 18. [2561] [2562] [2563] [2564] [2565] [2566] [2567] Overfull \hbox (12.78088pt too wide) in paragraph at lines 532--532 []\T1/pcr/m/n/10 boot(data, statistic, R, sim = "ordinary", stype = c("i", "f" , "w"), [2568] Underfull \hbox (badness 1325) in paragraph at lines 570--577 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sim-u-la-tion r e-quired. Pos-si-ble Underfull \hbox (badness 1275) in paragraph at lines 585--590 []\T1/ptm/m/n/10 An in-te-ger vec-tor or fac-tor spec-i-fy-ing the strata for m ulti-sample prob- [2569] [2570] [2571] Underfull \hbox (badness 1881) in paragraph at lines 826--828 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. Underfull \hbox (badness 6493) in paragraph at lines 853--857 [][][]\T1/pcr/m/n/10 boot.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 bo ot.ci[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 censboot[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/pcr/m/n/10 empinf[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 j ack.after.boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 tilt.boot[][][][]\T 1/ptm/m/n/10 , [2572] Overfull \hbox (4.38043pt too wide) in paragraph at lines 887--887 []\T1/pcr/m/n/9 nuke.lm <- glm(log(cost) ~ date+log(cap)+ne+ct+log(cum.n)+pt, data = nuke)[] Underfull \vbox (badness 10000) has occurred while \output is active [2573] [2574] [2575] Underfull \hbox (badness 1496) in paragraph at lines 1084--1093 []\T1/ptm/m/n/10 If sup-plied, a value to be used as an es-ti-mate of the vari- ance of the Underfull \hbox (badness 2005) in paragraph at lines 1084--1093 \T1/ptm/m/n/10 statis-tic for the nor-mal ap-prox-i-ma-tion and stu-den-tized i n-ter-vals. If it Underfull \hbox (badness 2343) in paragraph at lines 1084--1093 \T1/ptm/m/n/10 is not sup-plied and []\T1/pcr/m/n/10 length(index) []\T1/ptm/m/ n/10 is 2 then []\T1/pcr/m/n/10 var.t0 []\T1/ptm/m/n/10 de-faults to Underfull \hbox (badness 2150) in paragraph at lines 1105--1111 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2576] [2577] [2578] [2579] Underfull \hbox (badness 1571) in paragraph at lines 1445--1447 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2580] [2581] [2582] [2583] [2584] Overfull \hbox (12.78088pt too wide) in paragraph at lines 1738--1738 []\T1/pcr/m/n/10 censboot(data, statistic, R, F.surv, G.surv, strata = matrix( 1,n,2), [2585] [2586] [2587] Underfull \vbox (badness 10000) has occurred while \output is active [2588] Overfull \hbox (31.3804pt too wide) in paragraph at lines 2013--2013 []\T1/pcr/m/n/9 mel.cox <- coxph(Surv(time, status == 1) ~ ns(thickness, df=4) + strata(ulcer),[] [2589] Underfull \hbox (badness 6268) in paragraph at lines 2084--2086 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2590] [2591] [2592] Underfull \hbox (badness 1565) in paragraph at lines 2338--2343 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2593] Underfull \hbox (badness 4595) in paragraph at lines 2363--2368 \T1/ptm/m/n/10 are passed un-changed ev-ery time []\T1/pcr/m/n/10 boot.out$stat istic []\T1/ptm/m/n/10 is called. Underfull \hbox (badness 1881) in paragraph at lines 2432--2434 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. Underfull \hbox (badness 2057) in paragraph at lines 2440--2441 [][][]\T1/pcr/m/n/10 boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 empinf[] [][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 k3.linear[][][][]\T1/ptm/m/n/10 , [ ][][]\T1/pcr/m/n/10 linear.approx[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 saddle.distn[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 smooth.spline[][][][] \T1/ptm/m/n/10 , [2594] [2595] Underfull \hbox (badness 1077) in paragraph at lines 2536--2540 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of []\T1/pcr/m /n/10 n/((n-1)*(n-2)) []\T1/ptm/m/n/10 where []\T1/pcr/m/n/10 n []\T1/ptm/m/n/1 0 is the sam-ple Underfull \hbox (badness 1112) in paragraph at lines 2536--2540 \T1/ptm/m/n/10 size, if []\T1/pcr/m/n/10 unbiased []\T1/ptm/m/n/10 is []\T1/pcr /m/n/10 FALSE []\T1/ptm/m/n/10 then a mul-ti-plier of []\T1/pcr/m/n/10 1/n []\T 1/ptm/m/n/10 is used. This is mul-ti-plied by [2596] [2597] [2598] [2599] [2600] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2895--2895 []\T1/pcr/m/n/10 EEF.profile(y, tmin = min(y) + 0.1, tmax = max(y) - 0.1, n.t = 25, Overfull \hbox (18.78088pt too wide) in paragraph at lines 2897--2897 []\T1/pcr/m/n/10 EL.profile(y, tmin = min(y) + 0.1, tmax = max(y) - 0.1, n.t = 25,[] [2601] [2602] [2603] Underfull \hbox (badness 3861) in paragraph at lines 3105--3108 [][][]\T1/pcr/m/n/10 boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 boot.arr ay[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 boot.ci[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 control[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 jack .after.boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 linear.approx[][][][]\ T1/ptm/m/n/10 , [2604] Overfull \hbox (36.78088pt too wide) in paragraph at lines 3158--3158 []\T1/pcr/m/n/10 envelope(boot.out = NULL, mat = NULL, level = 0.95, index = 1 :ncol(mat)) [2605] [2606] [2607] Overfull \hbox (9.78043pt too wide) in paragraph at lines 3378--3378 []\T1/pcr/m/n/9 # Example 9.8 of Davison and Hinkley (1997) requires tilting t he resampling [2608] [2609] [2610] [2611] [2612] [2613] [2614] Overfull \hbox (18.78088pt too wide) in paragraph at lines 3838--3838 [] \T1/pcr/m/n/10 t = boot.out$t[, index], w = NULL, def = TRUE, q = NULL)[] [2615] [2616] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3977--3977 []\T1/pcr/m/n/9 grav.p <- imp.prob(grav.tilt.boot, w = grav.w, index = 3, t0 = grav.z0[3])[] [2617] [2618] [2619] [2620] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4259--4259 []\T1/pcr/m/n/9 # To draw the jackknife-after-bootstrap plot for the head siz e data as in [2621] [2622] Underfull \hbox (badness 10000) in paragraph at lines 4362--4364 []\T1/ptm/m/n/10 The in-dex of the vari-able of in-ter-est within the out-put o f Underfull \hbox (badness 1430) in paragraph at lines 4371--4375 \T1/ptm/m/n/10 If []\T1/pcr/m/n/10 t0 []\T1/ptm/m/n/10 is sup-plied but nei-the r []\T1/pcr/m/n/10 t []\T1/ptm/m/n/10 nor []\T1/pcr/m/n/10 L []\T1/ptm/m/n/10 a re sup-plied then []\T1/pcr/m/n/10 t0 []\T1/ptm/m/n/10 is set to [2623] [2624] [2625] [2626] [2627] [2628] [2629] [2630] [2631] Underfull \hbox (badness 3000) in paragraph at lines 4959--4962 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2632] [2633] [2634] [2635] Underfull \hbox (badness 2293) in paragraph at lines 5238--5241 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5238--5241 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2636] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5317--5317 []\T1/pcr/m/n/9 grav.boot <- boot(grav1, grav.fun, R = 499, stype = "w", strat a = grav1[, 2])[] [2637] [2638] [2639] [2640] [2641] [2642] [2643] [2644] Overfull \hbox (15.18042pt too wide) in paragraph at lines 5866--5866 []\T1/pcr/m/n/9 city.sp1$spa[1] <- jacobian(city, 1.25, city.sp1$zeta.hat) * c ity.sp1$spa[1][] [2645] Underfull \hbox (badness 1127) in paragraph at lines 5988--6006 []\T1/ptm/m/n/10 etc. un-til a point is found with a cdf ap-prox-i-ma-tion less than []\T1/pcr/m/n/10 min(alpha)/10[]\T1/ptm/m/n/10 , then [2646] Underfull \hbox (badness 2837) in paragraph at lines 6021--6024 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class []\T1/pcr/m/n/10 "s addle.distn"[]\T1/ptm/m/n/10 . See the help file for [2647] [2648] [2649] [2650] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6306--6306 []\T1/pcr/m/n/9 # This example is taken from Exercise 7.5 of Gill, Murray and Wright (1991). [2651] [2652] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6495--6495 []\T1/pcr/m/n/9 # Example 9.8 of Davison and Hinkley (1997) requires tilting t he resampling Overfull \hbox (20.58041pt too wide) in paragraph at lines 6497--6497 []\T1/pcr/m/n/9 # value of the test statistic 1.84. In the book exponential t ilting was used[] [2653] [2654] [2655] Underfull \hbox (badness 1596) in paragraph at lines 6742--6746 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2656] [2657] Overfull \hbox (20.58041pt too wide) in paragraph at lines 6902--6902 [] \T1/pcr/m/n/9 stype = "i", sim = "balanced", alpha = c(0.05, 0.95),[] [2658] [2659] [2660] [2661] [2662] [2663] [2664] [2665]) (./class-pkg.tex [2666] Chapter 19. [2667] [2668] [2669] [2670] [2671] [2672] [2673] [2674] [2675] [2676] [2677] [2678] [2679] [2680] Overfull \hbox (42.18039pt too wide) in paragraph at lines 1006--1006 [] \T1/pcr/m/n/9 alpha = list(seq(0.05, 0, length.out = 1e4), seq(0.02, 0, length.out = 1e5)),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1007--1007 [] \T1/pcr/m/n/9 radii = list(seq(8, 1, length.out = 1e4), seq(4, 1, length .out = 1e5)))[] [2681] [2682]) (./cluster-pkg.tex Chapter 20. [2683] [2684] [2685] Overfull \hbox (42.18039pt too wide) in paragraph at lines 253--253 [] \T1/pcr/m/n/9 all.equal(a.wgt [iC], agnes(d.vr, method="flexible", par.met hod = 0.5)[iC]) ,[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 254--254 [] \T1/pcr/m/n/9 all.equal(a.sing[iC], agnes(d.vr, method="flex", par.method= c(.5,.5,0, -.5))[iC]),[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 255--255 [] \T1/pcr/m/n/9 all.equal(a.comp[iC], agnes(d.vr, method="flex", par.method= c(.5,.5,0, +.5))[iC]))[] [2686] [2687] Underfull \vbox (badness 10000) has occurred while \output is active [2688] [2689] Overfull \hbox (18.78088pt too wide) in paragraph at lines 519--519 [] \T1/pcr/m/n/10 col = c(2, 0), border = 0, axes = TRUE, frame.plot = axes,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 523--523 [] \T1/pcr/m/n/10 yaxRight = fromLeft, y.mar = 2.4 + max.strlen/2.5, ...)[] [2690] [2691] Overfull \hbox (66.78088pt too wide) in paragraph at lines 638--638 [] \T1/pcr/m/n/10 keep.data = medoids.x, rngR = FALSE, pamLike = FALSE, c orrect.d = TRUE)[] [2692] [2693] [2694] Underfull \hbox (badness 2941) in paragraph at lines 792--795 [][][]\T1/pcr/m/n/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-en ces; [][][]\T1/pcr/m/n/10 clara.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/ n/10 pam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 partition.object[][][][]\ T1/ptm/m/n/10 , Overfull \hbox (4.38043pt too wide) in paragraph at lines 833--833 [] \T1/pcr/m/n/9 cl[,i] <- clara(xclara, nCl, medoids.x = FALSE, rngR = TRUE )$clustering[] [2695] Overfull \hbox (9.78043pt too wide) in paragraph at lines 835--835 []\T1/pcr/m/n/9 ## those that are not always in same cluster (5 out of 3000 fo r this seed):[] Underfull \hbox (badness 10000) in paragraph at lines 882--884 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2696] Overfull \hbox (24.78088pt too wide) in paragraph at lines 947--947 [] \T1/pcr/m/n/10 arrowArgs = list(col="red3", length=1/16, angle=90, code =3), ...)[] [2697] Underfull \hbox (badness 4872) in paragraph at lines 992--994 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 1006--1010 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2698] Underfull \hbox (badness 2503) in paragraph at lines 1092--1096 []\T1/ptm/m/n/10 Per Broberg (2006). SAGx: Sta-tis-ti-cal Anal-y-sis of the Gen eChip. R pack-age ver- [2699] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1118--1118 [] \T1/pcr/m/n/9 sapply(mets, function(M) maxSE(fk, sk, method = M, SE. factor = SEf)))[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 1135--1135 []\T1/pcr/m/n/9 ## You can manually set it before running this : doExtras < - TRUE # or FALSE[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1144--1144 [] \T1/pcr/m/n/9 gskmn <- clusGap(x, FUNcluster = kmeans, nstart = 20, K.max = 8, B = 60)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1146--1146 [] \T1/pcr/m/n/9 plot(gskmn, main = "clusGap(., FUNcluster = kmeans, n.start= 20, B= 60)")[] Underfull \vbox (badness 10000) has occurred while \output is active [2700] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1173--1173 []\T1/pcr/m/n/9 plot(gsP.Z, main = "clusGap() ==> k = 1 clust er is optimal")[] Underfull \hbox (badness 4144) in paragraph at lines 1205--1209 []\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 does not have a []\T1 /pcr/m/n/10 diss []\T1/ptm/m/n/10 nor a []\T1/pcr/m/n/10 data []\T1/ptm/m/n/10 com-po-nent, e.g., for [2701] Overfull \hbox (60.78088pt too wide) in paragraph at lines 1281--1281 [] \T1/pcr/m/n/10 col.clus = if(color) c(2, 4, 6, 3) else 5, cex = 1, cex.txt = cex,[] Overfull \hbox (72.78088pt too wide) in paragraph at lines 1287--1287 [] \T1/pcr/m/n/10 round(100 * var.dec, digits = 2), "% of the poin t variability."),[] [2702] [2703] [2704] Underfull \hbox (badness 10000) in paragraph at lines 1474--1477 Underfull \hbox (badness 10000) in paragraph at lines 1488--1492 [][][]\T1/pcr/m/n/10 princomp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cmds cale[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pam[][][][]\T1/ptm/m/n/10 , [ ][][]\T1/pcr/m/n/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 daisy[][ ][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 par[][][][]\T1/ptm/m/n/10 , [][][]\T 1/pcr/m/n/10 identify[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cov.mve[][][ ][]\T1/ptm/m/n/10 , Overfull \hbox (31.3804pt too wide) in paragraph at lines 1512--1512 []\T1/pcr/m/n/9 clusplot(pamv, col.p = votes.clus, labels = 4)# color points a nd label ellipses[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 1522--1522 [] \T1/pcr/m/n/9 clusplot(votes.diss, votes.clus, diss = TRUE, labels = 5)# i dent. only points[] [2705] Underfull \hbox (badness 5741) in paragraph at lines 1562--1565 []\T1/pcr/m/n/10 coefHier() []\T1/ptm/m/n/10 di-rectly in-ter-faces to the un-d er-ly-ing C code, and ``proves'' that \T1/ptm/m/it/10 only [2706] Overfull \hbox (12.78088pt too wide) in paragraph at lines 1631--1631 [] \T1/pcr/m/n/10 warnBin = warnType, warnAsym = warnType, warnConst = wa rnType,[] [2707] Underfull \hbox (badness 1552) in paragraph at lines 1680--1682 []\T1/ptm/b/n/10 A\T1/ptm/m/n/10 symmetric bi-nary vari-able, aka []\T1/pcr/m/n /10 "A" []\T1/ptm/m/n/10 in re-sult []\T1/pcr/m/n/10 Types[]\T1/ptm/m/n/10 , se e Underfull \hbox (badness 1629) in paragraph at lines 1694--1698 []\T1/ptm/b/n/10 I\T1/ptm/m/n/10 nterval scaled -- the \T1/ptm/b/n/10 de-fault \T1/ptm/m/n/10 for all nu-meric Underfull \hbox (badness 3746) in paragraph at lines 1694--1698 \T1/ptm/m/n/10 (incl []\T1/pcr/m/n/10 integer[]\T1/ptm/m/n/10 ) columns of []\T 1/pcr/m/n/10 x[]\T1/ptm/m/n/10 , aka []\T1/pcr/m/n/10 "I" []\T1/ptm/m/n/10 in r e-sult []\T1/pcr/m/n/10 Types[]\T1/ptm/m/n/10 , see [2708] Underfull \hbox (badness 1540) in paragraph at lines 1769--1777 \T1/ptm/m/n/10 In other words, $\OML/cmm/m/it/10 d[]$ \T1/ptm/m/n/10 is a weigh ted mean of $\OML/cmm/m/it/10 d[]$ \T1/ptm/m/n/10 with weights $\OML/cmm/m/it/1 0 w[]^^N[]$\T1/ptm/m/n/10 , where $\OML/cmm/m/it/10 w[]$[]\T1/pcr/m/n/10 = [2709] Overfull \hbox (25.98041pt too wide) in paragraph at lines 1856--1856 []\T1/pcr/m/n/9 ## Example 2 in reference, extended --- different ways of "m ixed" / "gower":[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1860--1860 []\T1/pcr/m/n/9 summary(d0 <- daisy(flower)) # -> the first 3 {0,1} treate d as *N*ominal[] Overfull \hbox (90.78033pt too wide) in paragraph at lines 1861--1861 []\T1/pcr/m/n/9 summary(dS123 <- daisy(flower, type = list(symm = 1:3))) # fi rst 3 treated as *S*ymmetric[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 1862--1862 []\T1/pcr/m/n/9 stopifnot(dS123 == d0) # i.e., *S*ymmetric <==> *N*ominal {fo r 2-level factor}[] Overfull \hbox (106.98032pt too wide) in paragraph at lines 1866--1866 []\T1/pcr/m/n/9 summary(dA123 <- daisy(flowerN)) # .. all 3 logicals treated * A*symmetric binary (w/ warning)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1868--1868 []\T1/pcr/m/n/9 summary(dA13 <- daisy(flower, type = list(asymm = c(1, 3), ord ratio = 7)))[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1875--1875 []\T1/pcr/m/n/9 Nflow[,1:3] <- lapply(flower[,1:3], function(f) as.integer(as. character(f)))[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1876--1876 []\T1/pcr/m/n/9 summary(dN <- daisy(Nflow)) # w/ warning: treated binary .. 1: 3 as interval[] Overfull \hbox (117.7803pt too wide) in paragraph at lines 1877--1877 []\T1/pcr/m/n/9 ## Still, using Euclidean/Manhattan distance for {0-1} *is* id entical to treating them as "N" :[] Overfull \hbox (42.78088pt too wide) in paragraph at lines 1893--1893 []\T1/pcr/m/n/10 diana(x, diss = inherits(x, "dist"), metric = "euclidean", st and = FALSE, [2710] [2711] [2712] [2713] [2714] Underfull \hbox (badness 10000) in paragraph at lines 2212--2215 Underfull \hbox (badness 3179) in paragraph at lines 2223--2229 [][][]\T1/pcr/m/n/10 predict.ellipsoid[][][] []\T1/ptm/m/n/10 which is also the [][][]\T1/pcr/m/n/10 predict[][][] []\T1/ptm/m/n/10 method for []\T1/pcr/m/n/1 0 ellipsoid []\T1/ptm/m/n/10 ob-jects. [2715] [2716] Underfull \hbox (badness 10000) in paragraph at lines 2380--2383 [][][]\T1/pcr/m/n/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-en ces; [][][]\T1/pcr/m/n/10 fanny.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/ n/10 partition.object[][][][]\T1/ptm/m/n/10 , [2717] Underfull \hbox (badness 1292) in paragraph at lines 2448--2451 []\T1/ptm/m/n/10 named vec-tor with []\T1/pcr/m/n/10 iterations[]\T1/ptm/m/n/10 , the num-ber of it-er-a-tions needed and [2718] Underfull \hbox (badness 6675) in paragraph at lines 2457--2459 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see Underfull \hbox (badness 10000) in paragraph at lines 2480--2483 [][][]\T1/pcr/m/n/10 fanny[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.f anny[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 dissimilarity.object[][][][]\ T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 partition.object[][][][]\T1/ptm/m/n/10 , [2719] Overfull \hbox (15.18042pt too wide) in paragraph at lines 2555--2555 [] \T1/pcr/m/n/9 "4" = "red", "5" = "blue")[levels(f lowerN$color)][] Overfull \hbox (90.78033pt too wide) in paragraph at lines 2556--2556 []\T1/pcr/m/n/9 levels(flowerN$soil) <- c("1" = "dry", "2" = "normal", "3" = "wet")[levels(flowerN$soil)][] [2720] Overfull \hbox (48.78088pt too wide) in paragraph at lines 2619--2619 []\T1/pcr/m/n/10 medoids(x, clustering, diss = inherits(x, "dist"), USE.NAMES = FALSE, ...) [2721] Overfull \hbox (69.18036pt too wide) in paragraph at lines 2666--2666 [] \T1/pcr/m/n/9 stopifnot(length(cl.k) == nrow(votes.repub), 1 <= cl.k, cl.k <= k, table(cl.k) >= 2)[] [2722] Overfull \hbox (15.18042pt too wide) in paragraph at lines 2771--2771 []\T1/pcr/m/n/9 ## One place to see if/how error messages are *translated* (to \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 de\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 / \TS1/pcr/m/n/ 9 '\T1/pcr/m/n/9 pl\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ):[] [2723] Overfull \hbox (42.78088pt too wide) in paragraph at lines 2850--2850 [] \T1/pcr/m/n/10 variant = c("original", "o_1", "o_2", "f_3", "f_4", "f_5" , "faster"),[] [2724] [2725] [2726] [2727] Overfull \hbox (85.38034pt too wide) in paragraph at lines 3078--3078 []\T1/pcr/m/n/9 ## use obs. 1 & 16 as starting medoids -- same result (for see d above, *and* typically) :[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3080--3080 []\T1/pcr/m/n/9 ## no _build_ *and* no _swap_ phase: just cluster all obs. aro und (1, 16):[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 3083--3083 []\T1/pcr/m/n/9 keep_nms <- setdiff(names(pamx), c("call", "objective"))# .$ob jective["build"] differ[] [2728] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3187--3187 []\T1/pcr/m/n/9 axis(1, k.best, paste("best",k.best,sep="\n"), col = "red", co l.axis = "red")[] [2729] [2730] [2731] Overfull \hbox (78.78088pt too wide) in paragraph at lines 3381--3381 [] \T1/pcr/m/n/10 sub = paste("Agglomerative Coefficient = ",round(x $ac, digits = 2)),[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 3382--3382 [] \T1/pcr/m/n/10 adj = 0, nmax.lab = 35, max.strlen = 5, xax.pretty = TRUE, ...)[] [2732] Underfull \hbox (badness 10000) in paragraph at lines 3449--3452 []\T1/ptm/m/n/10 For the den-dro-gram, more flex-i-bil-ity than via []\T1/pcr/m /n/10 pltree() []\T1/ptm/m/n/10 is pro-vided by []\T1/pcr/m/n/10 dg <- [2733] Overfull \hbox (54.78088pt too wide) in paragraph at lines 3499--3499 [] \T1/pcr/m/n/10 sub = paste("Divisive Coefficient = ", round(x$dc, digits = 2)),[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 3500--3500 [] \T1/pcr/m/n/10 adj = 0, nmax.lab = 35, max.strlen = 5, xax.pretty = TRUE, ...)[] [2734] [2735] [2736] Underfull \hbox (badness 10000) in paragraph at lines 3685--3688 []\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 does not have a []\T1 /pcr/m/n/10 diss []\T1/ptm/m/n/10 com-po-nent as for [][][]\T1/pcr/m/n/10 pam[] [][](*, Underfull \hbox (badness 1448) in paragraph at lines 3685--3688 \T1/pcr/m/n/10 keep.diss=FALSE)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 dist []\T1/p tm/m/n/10 must be the dis-sim-i-lar-ity if a clus-plot is [2737] Underfull \hbox (badness 10000) in paragraph at lines 3748--3753 [][][]\T1/pcr/m/n/10 partition.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n /10 clusplot.partition[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 clusplot.de fault[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pam[][][][]\T1/ptm/m/n/10 , [2738] Underfull \hbox (badness 1748) in paragraph at lines 3810--3815 \T1/ptm/m/n/10 dis-patches to [][][]\T1/pcr/m/n/10 plot.hclust[][][](..)[]\T1/p tm/m/n/10 . If more flex-i-ble plots are needed, con-sider []\T1/pcr/m/n/10 xx <- Underfull \hbox (badness 6268) in paragraph at lines 3822--3825 [][][]\T1/pcr/m/n/10 agnes[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 agnes.o bject[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 diana[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 diana.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/1 0 hclust[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 par[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.agnes[][][][]\T1/ptm/m/n/10 , [2739] Underfull \hbox (badness 10000) in paragraph at lines 3883--3885 []\T1/ptm/m/n/10 Available as `\T1/pcr/m/n/10 pluton.dat\T1/ptm/m/n/10 ' from t he archive of the Uni-ver-sity of Antwer-pen, [2740] [2741] Underfull \hbox (badness 10000) in paragraph at lines 4002--4005 [][][]\T1/pcr/m/n/10 summary.agnes[][][] []\T1/ptm/m/n/10 pro-duc-ing more out- put; [][][]\T1/pcr/m/n/10 agnes[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 ag nes.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/ n/10 , [2742] Underfull \hbox (badness 10000) in paragraph at lines 4033--4036 [][][]\T1/pcr/m/n/10 summary.clara[][][] []\T1/ptm/m/n/10 pro-duc-ing more out- put; [][][]\T1/pcr/m/n/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cl ara.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/ n/10 , [2743] Overfull \hbox (36.78088pt too wide) in paragraph at lines 4086--4086 [] \T1/pcr/m/n/10 digits = getOption("digits"), justify = "none", right = TRUE, ...)[] Underfull \hbox (badness 2035) in paragraph at lines 4097--4099 []\T1/ptm/m/n/10 a []\T1/pcr/m/n/10 dissimilarity []\T1/ptm/m/n/10 ob-ject or a []\T1/pcr/m/n/10 summary.dissimilarity []\T1/ptm/m/n/10 one for [2744] [2745] [2746] Overfull \hbox (54.78088pt too wide) in paragraph at lines 4290--4290 [] \T1/pcr/m/n/10 main = NULL, sub = NULL, xlab = expression("Silhouette w idth "* s[i]),[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 4292--4292 [] \T1/pcr/m/n/10 cex.names = par("cex.axis"), do.n.k = TRUE, do.clus.stat = TRUE, ...)[] [2747] [2748] Overfull \hbox (31.3804pt too wide) in paragraph at lines 4434--4434 []\T1/pcr/m/n/9 plot(si, col = c("red", "green", "blue", "purple"))# with clus ter-wise coloring[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 4443--4443 [] \T1/pcr/m/n/9 plot(silhouette(pam(ruspini, k=k)), main = paste("k = ",k), do.n.k=FALSE)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 4445--4445 [] \T1/pcr/m/n/9 outer = TRUE, font = par("font.main"), cex = par("cex.ma in")); frame()[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 4448--4448 []\T1/pcr/m/n/9 c6 <- c("tomato", "forest green", "dark blue", "purple2", "gol denrod4", "gray20")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 4450--4450 [] \T1/pcr/m/n/9 plot(silhouette(pam(ruspini, k=k)), main = paste("k = ",k), do.n.k=FALSE,[] [2749] Overfull \hbox (31.3804pt too wide) in paragraph at lines 4457--4457 []\T1/pcr/m/n/9 str(xc1k <- xclara[ sample(nrow(xclara), size = 1000) ,]) # ro wnames == indices[] [2750] [2751] [2752] [2753] [2754] [2755] Underfull \hbox (badness 10000) in paragraph at lines 4828--4834 []\T1/ptm/m/n/10 Our ver-sion of the []\T1/pcr/m/n/10 xclara []\T1/ptm/m/n/10 i s slightly more rounded than the one from Underfull \hbox (badness 10000) in paragraph at lines 4844--4846 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/pcr/m/n/10 xclara.dat\T1/ptm/m/n/10 ' in side Overfull \hbox (52.98038pt too wide) in paragraph at lines 4857--4857 []\T1/pcr/m/n/9 ## Visualization: Assuming groups are defined as {1:1000}, {10 01:2000}, {2001:3000} Overfull \hbox (9.78043pt too wide) in paragraph at lines 4859--4859 []\T1/pcr/m/n/9 p.ID <- c(78, 1411, 2535) ## PAM\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s medoid indices == pam(xclara, 3)$id.med[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4869--4869 [] \T1/pcr/m/n/9 ## We see 3 + 2 + 2 = 7 clear "outlier"s or "wrong group" o bservations:[] [2756] Overfull \hbox (20.58041pt too wide) in paragraph at lines 4873--4873 [] \T1/pcr/m/n/9 ## Apart from these, what are the robust ranges of indices? - - Robust range:[] [2757]) (./codetools-pkg.tex [2758] Chapter 21. Overfull \hbox (24.78088pt too wide) in paragraph at lines 16--16 [] \T1/pcr/m/n/10 suppressParamUnused = !all, suppressFundefMismatch = FALSE,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 17--17 [] \T1/pcr/m/n/10 suppressLocalUnused = FALSE, suppressNoLocalFun = !all,[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 18--18 [] \T1/pcr/m/n/10 skipWith = FALSE, suppressUndefined = dfltSuppress Undefined,[] [2759] Underfull \hbox (badness 10000) in paragraph at lines 65--70 []\T1/pcr/m/n/10 checkUsageEnv []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 checkUsage Package []\T1/ptm/m/n/10 are con-ve-nience func-tions that ap-ply [2760] Overfull \hbox (18.78088pt too wide) in paragraph at lines 118--118 []\T1/pcr/m/n/10 makeConstantFolder(..., leaf, handler, call, exit, isLocal, f oldable,[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 121--121 []\T1/pcr/m/n/10 makeUsageCollector(fun, ..., name, enterLocal, enterGlobal, e nterInternal,[] [2761] [2762] [2763]) (./foreign-pkg.tex [2764] Chapter 22. Underfull \hbox (badness 10000) in paragraph at lines 33--37 []\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o ut of a Data Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/ptm/m/n/10 Set in SAS Trans-port (XPORT) For-mat'' avail-able as [][]$\T1/p cr/m/n/10 https : / / support . Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/pcr/m/n/10 sas . com / content / dam / SAS / support / en / technical-[]pap ers / Overfull \hbox (74.28088pt too wide) in paragraph at lines 33--37 \T1/pcr/m/n/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[]s et-[]in-[]sas-[]transport-[]xport-[]format . [2765] Underfull \hbox (badness 1231) in paragraph at lines 67--70 []\T1/ptm/m/n/10 a char-ac-ter string with the name of the ARFF file to read fr om, or a [2766] [2767] Underfull \hbox (badness 3601) in paragraph at lines 234--242 []\T1/ptm/m/n/10 A data frame with at-tributes. These will in-clude []\T1/pcr/m /n/10 "datalabel"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "time.stamp"[]\T1/ptm/m/n/ 10 , [2768] Overfull \hbox (12.78088pt too wide) in paragraph at lines 292--292 []\T1/pcr/m/n/10 read.epiinfo(file, read.deleted = FALSE, guess.broken.dates = FALSE, [2769] [2770] [2771] Overfull \hbox (48.78088pt too wide) in paragraph at lines 458--458 [] \T1/pcr/m/n/10 trim_values = TRUE, reencode = NA, use.missings = t o.data.frame,[] [2772] Overfull \hbox (30.78088pt too wide) in paragraph at lines 459--459 [] \T1/pcr/m/n/10 sub = ".", add.undeclared.levels = c("sort", "appen d", "no"),[] Underfull \hbox (badness 2846) in paragraph at lines 502--511 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer-ent lev- Underfull \hbox (badness 3746) in paragraph at lines 502--511 \T1/ptm/m/n/10 els. For []\T1/pcr/m/n/10 "append" []\T1/ptm/m/n/10 (the de-faul t), the first orig-i-nal value la-bel is Underfull \hbox (badness 2269) in paragraph at lines 502--511 \T1/ptm/m/n/10 kept while fur-ther du-pli-cated la-bels are re-named to []\T1/p cr/m/n/10 paste0(label, Underfull \hbox (badness 10000) in paragraph at lines 512--515 []\T1/ptm/m/n/10 character: the in-fix used for la-bels of fac-tor lev-els with du- Underfull \hbox (badness 10000) in paragraph at lines 512--515 \T1/ptm/m/n/10 pli-cated value la-bels in SPSS (de-fault []\T1/pcr/m/n/10 "_dup licated_"[]\T1/ptm/m/n/10 ) if [2773] Underfull \hbox (badness 10000) in paragraph at lines 546--554 []\T1/ptm/m/n/10 URL [][]$\T1/pcr/m/n/10 https : / / learn . microsoft . com / en-[]us / windows / win32 / intl / Underfull \hbox (badness 7613) in paragraph at lines 564--570 []\T1/ptm/m/n/10 There may be at-tributes []\T1/pcr/m/n/10 "label.table" []\T1/ ptm/m/n/10 and []\T1/pcr/m/n/10 "variable.labels"[]\T1/ptm/m/n/10 . At-tribute [2774] Overfull \hbox (20.58041pt too wide) in paragraph at lines 619--619 []\T1/pcr/m/n/9 ### hence may need some special treatment with appropriate arg ument settings.[] Overfull \hbox (112.38031pt too wide) in paragraph at lines 620--620 []\T1/pcr/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2775] Overfull \hbox (9.78043pt too wide) in paragraph at lines 653--653 []\T1/pcr/m/n/9 ## Long Strings (>255 chars) are imported in consecutive separ ate variables[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 657--657 []\T1/pcr/m/n/9 cat.long.string <- function(x, w=70) cat(paste(strwrap(x, widt h=w), "\n"))[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 664--664 []\T1/pcr/m/n/9 long.string <- apply(x[,c("string_500", "STRIN0")], 1, paste, collapse="")[] [2776] [2777] Underfull \hbox (badness 10000) in paragraph at lines 808--809 Overfull \hbox (4.38043pt too wide) in paragraph at lines 818--818 []\T1/pcr/m/n/9 iris.s <- read.systat(system.file("files/Iris.syd", package="f oreign")[1])[] [2778] Underfull \hbox (badness 10000) in paragraph at lines 865--869 []\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o ut of a Data Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/ptm/m/n/10 Set in SAS Trans-port (XPORT) For-mat'' avail-able at [][]$\T1/p cr/m/n/10 https : / / support . Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/pcr/m/n/10 sas . com / content / dam / SAS / support / en / technical-[]pap ers / Overfull \hbox (74.28088pt too wide) in paragraph at lines 865--869 \T1/pcr/m/n/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[]s et-[]in-[]sas-[]transport-[]xport-[]format . [2779] Overfull \hbox (24.78088pt too wide) in paragraph at lines 896--896 [] \T1/pcr/m/n/10 data.restore(file, print = FALSE, verbose = FALSE, env = .G lobalEnv) [2780] Overfull \hbox (0.78088pt too wide) in paragraph at lines 960--960 []\T1/pcr/m/n/10 write.arff(x, file, eol = "\n", relation = deparse(substitute (x))) [2781] [2782] Underfull \hbox (badness 10000) in paragraph at lines 1072--1073 [][][]$\T1/pcr/m/n/10 https : / / www . clicketyclick . dk / databases / xbase / format / data _ types . Overfull \hbox (24.78088pt too wide) in paragraph at lines 1108--1108 [] \T1/pcr/m/n/10 convert.factors = c("labels", "string", "numeric", "codes"))[] [2783] [2784] Underfull \hbox (badness 10000) in paragraph at lines 1265--1271 []\T1/ptm/m/n/10 The work for this func-tion is done by []\T1/pcr/m/n/10 foreig n:::writeForeignStata[]\T1/ptm/m/n/10 , [2785] Underfull \hbox (badness 2088) in paragraph at lines 1291--1294 []\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 package="SPSS"[]\T1/ptm/m/n/10 , as a sid e ef-fect, the dec-i-mal in-di-ca-tor is al-ways set by []\T1/pcr/m/n/10 SET [2786]) (./lattice-pkg.tex Chapter 23. [2787] Underfull \hbox (badness 2073) in paragraph at lines 114--118 \T1/ptm/m/n/10 pro-vide a holis-tic in-tro-duc-tion to the Trel-lis paradigm: [ ][]$\T1/pcr/m/n/10 http : / / web . archive . org / Underfull \hbox (badness 10000) in paragraph at lines 114--118 \T1/pcr/m/n/10 web / 20081020164041 / http : / / cm . bell-[]labs . com / cm / ms / departments / sia / [2788] [2789] Overfull \hbox (12.78088pt too wide) in paragraph at lines 288--288 [] \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le vels"),[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 292--292 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default .xyplot"),[] [2790] Overfull \hbox (42.78088pt too wide) in paragraph at lines 303--303 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defaul t.dotplot"),[] Overfull \hbox (54.78088pt too wide) in paragraph at lines 313--313 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defau lt.barchart"),[] Overfull \hbox (66.78088pt too wide) in paragraph at lines 324--324 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defa ult.stripplot"),[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 348--348 [] \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le vels"),[] Underfull \vbox (badness 10000) has occurred while \output is active [2791] Overfull \hbox (30.78088pt too wide) in paragraph at lines 352--352 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default .bwplot"),[] [2792] [2793] [2794] Underfull \hbox (badness 1221) in paragraph at lines 655--658 []\T1/ptm/m/n/10 A log-i-cal, or a list con-tain-ing com-po-nents to be used as ar-gu-ments to [2795] [2796] [2797] [2798] Underfull \hbox (badness 2005) in paragraph at lines 988--1000 []\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether the un-used lev-els of fac-tors will be Underfull \hbox (badness 1199) in paragraph at lines 988--1000 \T1/ptm/m/n/10 some-times ap-pro-pri-ate to sup-press drop-ping to pre-serve a use-ful lay-out. [2799] [2800] Underfull \hbox (badness 1661) in paragraph at lines 1101--1107 []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 y []\T1/ptm/m/n/10 sho uld be num-bers be-tween 0 and 1, giv-ing co-or-di-nates [2801] Underfull \hbox (badness 1097) in paragraph at lines 1227--1229 []\T1/ptm/m/n/10 Logical flag, whether leg-end should have a Underfull \hbox (badness 1917) in paragraph at lines 1241--1242 []\T1/ptm/m/n/10 Space be-tween col-umn blocks, in ad-di-tion to [2802] [2803] [2804] Underfull \hbox (badness 1540) in paragraph at lines 1476--1482 []\T1/ptm/m/n/10 A list con-tain-ing pos-si-ble ar-gu-ments to [][][]\T1/pcr/m/ n/10 plot.trellis[][][][]\T1/ptm/m/n/10 , [2805] Underfull \hbox (badness 10000) in paragraph at lines 1563--1580 [][][]\T1/pcr/m/n/10 panel.dotplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 panel.stripplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 panel.superpose[] [][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 panel.loess[][][][]\T1/ptm/m/n/10 , [2806] Underfull \vbox (badness 10000) has occurred while \output is active [2807] Overfull \hbox (36.7804pt too wide) in paragraph at lines 1651--1651 [] \T1/pcr/m/n/9 text = list(lab = as.character(unique(Orchar dSprays$rowpos))),[] [2808] Underfull \hbox (badness 2012) in paragraph at lines 1705--1707 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][][]\T1/pcr/m/n/10 xyplot[] [][][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1735--1739 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to Underfull \hbox (badness 10000) in paragraph at lines 1752--1755 []\T1/ptm/m/n/10 style set-tings be-yond the stan-dard []\T1/pcr/m/n/10 col[]\T 1/ptm/m/n/10 , []\T1/pcr/m/n/10 lty[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lwd[]\T1 /ptm/m/n/10 , etc; see [2809] Underfull \hbox (badness 10000) in paragraph at lines 1804--1806 []\T1/ptm/m/n/10 Gabor Grothendieck, Achim Zeileis, Deep-ayan Sarkar and Fe-lix An-drews [2810] [2811] [2812] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2045--2045 [] \T1/pcr/m/n/10 auto.key = lattice.getOption("default.args")$auto .key,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2058--2058 [] \T1/pcr/m/n/10 lattice.getOption("prepanel.default.densitypl ot"),[] Underfull \vbox (badness 10000) has occurred while \output is active [2813] Underfull \hbox (badness 10000) in paragraph at lines 2137--2140 []\T1/ptm/m/n/10 When []\T1/pcr/m/n/10 breaks []\T1/ptm/m/n/10 is un-spec-i-fie d, the value of Underfull \hbox (badness 1320) in paragraph at lines 2137--2140 []\T1/pcr/m/n/10 lattice.getOption("histogram.breaks") []\T1/ptm/m/n/10 is firs t checked. If [2814] [2815] [2816] Overfull \hbox (12.78088pt too wide) in paragraph at lines 2342--2342 [] \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le vels"),[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 2346--2346 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default .qqmath"),[] [2817] [2818] [2819] [2820] [2821] Overfull \hbox (60.78088pt too wide) in paragraph at lines 2702--2702 [] \T1/pcr/m/n/10 panel = if (useRaster) lattice.getOption("panel.lev elplot.raster")[] [2822] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2734--2734 [] \T1/pcr/m/n/10 lattice.getOption("prepanel.default.contourpl ot"),[] Underfull \vbox (badness 10000) has occurred while \output is active [2823] Underfull \hbox (badness 2913) in paragraph at lines 2813--2818 []\T1/ptm/m/n/10 Optional vec-tors of val-ues that de-fine the grid when []\T1/ pcr/m/n/10 x []\T1/ptm/m/n/10 is a ma-trix. Underfull \hbox (badness 3058) in paragraph at lines 2813--2818 []\T1/pcr/m/n/10 row.values []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 column.values []\T1/ptm/m/n/10 must have the same lengths as [2824] [2825] Underfull \hbox (badness 6758) in paragraph at lines 2941--2945 []\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether the col-orkey should be Underfull \hbox (badness 7576) in paragraph at lines 2941--2945 \T1/ptm/m/n/10 ren-dered as a raster im-age us-ing [][][]\T1/pcr/m/n/10 grid.ra ster[][][][]\T1/ptm/m/n/10 . See also Underfull \hbox (badness 10000) in paragraph at lines 2947--2949 []\T1/ptm/m/n/10 Logical flag, passed to [][][]\T1/pcr/m/n/10 rasterGrob[][][] []\T1/ptm/m/n/10 when Underfull \hbox (badness 7256) in paragraph at lines 2984--2984 []\T1/pcr/m/n/10 allow.multiple[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 outer[]\T1/p tm/m/n/10 , []\T1/pcr/m/n/10 prepanel[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 scales []\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 gr oups[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1609) in paragraph at lines 2997--3003 []\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether raster rep-re-sen-ta-ti ons should be used, Underfull \hbox (badness 2772) in paragraph at lines 2997--3003 \T1/ptm/m/n/10 both for the false color im-age and the color key (if present). Ef- Underfull \hbox (badness 1400) in paragraph at lines 2997--3003 \T1/ptm/m/n/10 fec-tively, set-ting this to []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n /10 changes the de-fault panel func-tion from Underfull \hbox (badness 2486) in paragraph at lines 3021--3025 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2826] [2827] Overfull \hbox (24.78088pt too wide) in paragraph at lines 3126--3126 [] \T1/pcr/m/n/10 xlim = if (is.factor(x)) levels(x) else range(x, finite = TRUE),[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 3127--3127 [] \T1/pcr/m/n/10 ylim = if (is.factor(y)) levels(y) else range(y, finite = TRUE),[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 3128--3128 [] \T1/pcr/m/n/10 zlim = if (is.factor(z)) levels(z) else range(z, finite = TRUE),[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 3139--3139 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default. cloud"),[] [2828] Overfull \hbox (66.78088pt too wide) in paragraph at lines 3154--3154 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defa ult.wireframe"),[] [2829] Underfull \hbox (badness 2913) in paragraph at lines 3219--3224 []\T1/ptm/m/n/10 Optional vec-tors of val-ues that de-fine the grid when []\T1/ pcr/m/n/10 x []\T1/ptm/m/n/10 is a ma-trix. Underfull \hbox (badness 3058) in paragraph at lines 3219--3224 []\T1/pcr/m/n/10 row.values []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 column.values []\T1/ptm/m/n/10 must have the same lengths as Underfull \hbox (badness 2418) in paragraph at lines 3225--3225 []\T1/pcr/m/n/10 allow.multiple[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 outer[]\T1/p tm/m/n/10 , []\T1/pcr/m/n/10 auto.key[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 prepan el[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 groups[]\T1/ptm/m/n/10 , [2830] [2831] [2832]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.parallel}) has been already used, duplicate ignored \relax l.3506 \aliasA{parallel}{B\_08\_splom}{parallel} [2833] Overfull \hbox (18.78088pt too wide) in paragraph at lines 3548--3548 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default. splom"),[] Overfull \hbox (54.78088pt too wide) in paragraph at lines 3571--3571 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defau lt.parallel"),[] Underfull \vbox (badness 10000) has occurred while \output is active [2834] [2835] [2836] [2837] [2838] Overfull \hbox (18.78088pt too wide) in paragraph at lines 3906--3906 []\T1/pcr/m/n/10 oneway(formula, data, location=mean, spread=function(x) sqrt( var(x))) [2839] [2840] Underfull \hbox (badness 2277) in paragraph at lines 3992--3996 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings by Underfull \hbox (badness 2435) in paragraph at lines 3992--3996 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2841] Overfull \hbox (120.78088pt too wide) in paragraph at lines 4089--4089 [] \T1/pcr/m/n/10 symbol = palette.colors(palette = "Okabe-Ito") [c(6, 2, 4, 7, 3, 5, 8)],[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 4091--4091 [] \T1/pcr/m/n/10 region = hcl.colors(14, palette = "YlGnBu", re v = TRUE),[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 4098--4098 [] \T1/pcr/m/n/10 reference = "gray90", bg = "transparent", fg = " black",[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 4099--4099 [] \T1/pcr/m/n/10 strip.bg = rep("gray95", 7), strip.fg = rep("gra y70", 7),[] [2842] [2843] Overfull \hbox (18.78088pt too wide) in paragraph at lines 4242--4242 []\T1/pcr/m/n/10 trellis.par.set(name, value, ..., theme, warn = TRUE, strict = FALSE) Underfull \hbox (badness 1173) in paragraph at lines 4251--4255 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in [2844] Underfull \hbox (badness 3219) in paragraph at lines 4278--4280 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when Underfull \hbox (badness 1728) in paragraph at lines 4295--4299 []\T1/pcr/m/n/10 theme[]\T1/ptm/m/n/10 ). These are used to mod-ify the cur-ren t set-tings (ob-tained by [2845] Underfull \hbox (badness 5161) in paragraph at lines 4360--4364 []\T1/ptm/m/n/10 The ac-tual list of the com-po-nents in []\T1/pcr/m/n/10 trell is.settings []\T1/ptm/m/n/10 has not been fi-nal-ized, Underfull \hbox (badness 4913) in paragraph at lines 4360--4364 \T1/ptm/m/n/10 so I'm not at-tempt-ing to list them here. The cur-rent value ca n be ob-tained by [2846] Underfull \hbox (badness 1067) in paragraph at lines 4478--4488 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. []\T1/pcr/m/n/10 col []\T1/ptm/m/n/ 10 is used for com-po-nents []\T1/pcr/m/n/10 "plot.symbol"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4478--4488 []\T1/pcr/m/n/10 "plot.line"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "plot.polygon"[ ]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "superpose.symbol"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1735) in paragraph at lines 4478--4488 []\T1/pcr/m/n/10 "superpose.line"[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 "super pose.polygon"[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 col.points Underfull \hbox (badness 10000) in paragraph at lines 4478--4488 []\T1/ptm/m/n/10 over-rides []\T1/pcr/m/n/10 col[]\T1/ptm/m/n/10 , but is used only for []\T1/pcr/m/n/10 "plot.symbol" []\T1/ptm/m/n/10 and Underfull \hbox (badness 5231) in paragraph at lines 4478--4488 []\T1/pcr/m/n/10 "superpose.symbol"[]\T1/ptm/m/n/10 . Sim-i-larly, []\T1/pcr/m/ n/10 col.line []\T1/ptm/m/n/10 over-rides []\T1/pcr/m/n/10 col []\T1/ptm/m/n/10 for [2847] Underfull \hbox (badness 1701) in paragraph at lines 4503--4506 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents []\T1/pcr/m/n/10 pl ot.symbol[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 plot.polygon[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4506--4508 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents []\T1/pcr/m/n/10 plot.polygon []\T1/ptm/m/n/10 and [2848] Underfull \hbox (badness 2932) in paragraph at lines 4649--4654 []\T1/pcr/m/n/10 auto.key[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 aspect[]\T1/ptm/m/ n/10 , []\T1/pcr/m/n/10 between[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 grid[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 skip[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/ ptm/m/n/10 , []\T1/pcr/m/n/10 xscale.components[]\T1/ptm/m/n/10 , [2849] [2850] [2851] [2852] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4925--4925 []\T1/pcr/m/n/9 p12 <- densityplot( ~ height | voice.part, data = singer, xlab = "Height")[] [2853] [2854] Underfull \hbox (badness 1558) in paragraph at lines 5048--5048 []\T1/pcr/m/n/10 main[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 page[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 par.strip.text[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 prepanel[]\ T1/ptm/m/n/10 , []\T1/pcr/m/n/10 scales[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 skip []\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1270) in paragraph at lines 5048--5048 []\T1/pcr/m/n/10 xscale.components[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 yscale.co mponents[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 axis[]\T1/ptm/m/n/10 , []\T1/pcr/m/ n/10 par.settings[]\T1/ptm/m/n/10 , Underfull \vbox (badness 1092) has occurred while \output is active [2855] Underfull \hbox (badness 10000) in paragraph at lines 5105--5108 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 trellis[]\T1/ptm/m/n/10 , by de-fault plot-ted by []\T1/pcr/m/n/10 print.trellis[]\T1/ptm/m/n/10 . [2856] [2857] Underfull \hbox (badness 1442) in paragraph at lines 5232--5235 []\T1/pcr/m/n/10 plot.shingle []\T1/ptm/m/n/10 dis-plays the ranges of shin-gle s via rect-an-gles. []\T1/pcr/m/n/10 print.shingle []\T1/ptm/m/n/10 and [2858] [2859] [2860] [2861] [2862] Underfull \hbox (badness 3646) in paragraph at lines 5571--5574 [][][]\T1/pcr/m/n/10 Lattice[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 draw. key[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 trellis.par.get[][][][]\T1/ptm /m/n/10 , and [][][]\T1/pcr/m/n/10 xyplot[][][][]\T1/ptm/m/n/10 , specif-i-call y the en-try for Overfull \hbox (36.78088pt too wide) in paragraph at lines 5601--5601 [] \T1/pcr/m/n/10 bg = trellis.par.get("strip.background")$col[wh ich.given],[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 5602--5602 [] \T1/pcr/m/n/10 fg = trellis.par.get("strip.shingle")$col[which .given],[] [2863] Underfull \hbox (badness 10000) in paragraph at lines 5684--5687 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 2103) in paragraph at lines 5684--5687 []\T1/pcr/m/n/10 horizontal=FALSE []\T1/ptm/m/n/10 is use-ful for strips on the left of pan-els us-ing [2864] Underfull \hbox (badness 1635) in paragraph at lines 5710--5715 []\T1/pcr/m/n/10 strip.default []\T1/ptm/m/n/10 is called for its side-effect, which is to draw a strip ap-pro-pri-ate for [2865] [2866] Overfull \hbox (0.78088pt too wide) in paragraph at lines 5861--5861 []\T1/pcr/m/n/10 panel.identify.qqmath(x, distribution, groups, subscripts, la bels,[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 5875--5875 []\T1/pcr/m/n/10 panel.link.splom(threshold = 18, verbose = getOption("verbose "), ...)[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 5876--5876 []\T1/pcr/m/n/10 panel.brush.splom(threshold = 18, verbose = getOption("verbos e"), ...)[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 5879--5879 []\T1/pcr/m/n/10 trellis.vpname(name = c("position", "split", "split.location" , "toplevel",[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 5882--5882 [] \T1/pcr/m/n/10 "xlab", "ylab", "xlab.top", "ylab.rig ht", "page"),[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 5884--5884 [] \T1/pcr/m/n/10 side = c("left", "top", "right", "bottom", "in side"),[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 5890--5890 [] \T1/pcr/m/n/10 which.given = lattice.getStatus("current.whi ch.given",[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 5891--5891 [] \T1/pcr/m/n/10 prefix = pre fix),[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 5892--5892 [] \T1/pcr/m/n/10 which.panel = lattice.getStatus("current.whi ch.panel",[] [2867] Overfull \hbox (0.78088pt too wide) in paragraph at lines 5893--5893 [] \T1/pcr/m/n/10 prefix = pre fix),[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 5894--5894 [] \T1/pcr/m/n/10 column = lattice.getStatus("current.focus.co lumn",[] Underfull \hbox (badness 10000) in paragraph at lines 5910--5912 []\T1/ptm/m/n/10 variables defin-ing the con-tents of the panel. In the case of Underfull \hbox (badness 2376) in paragraph at lines 5921--5923 []\T1/ptm/m/n/10 an op-tional vec-tor of la-bels as-so-ci-ated with each point. De-faults to [2868] Underfull \hbox (badness 2538) in paragraph at lines 6045--6049 \T1/ptm/m/n/10 For []\T1/pcr/m/n/10 trellis.focus[]\T1/ptm/m/n/10 , the de-faul t is []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 in in-ter-ac-tive mode, and Underfull \hbox (badness 4205) in paragraph at lines 6056--6063 []\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 panel.identify.qqmath[]\T1/ptm/m/n/10 , e x-tra pa-ram-e-ters are passed on to Underfull \hbox (badness 4792) in paragraph at lines 6056--6063 []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 trellis.switchFocus[]\T1/ptm/m/n/10 , the se are used (in com-bi-na-tion with [2869] [2870] Underfull \hbox (badness 10000) in paragraph at lines 6209--6213 [][][]\T1/pcr/m/n/10 identify[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Latt ice[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.trellis[][][][]\T1/ptm/m /n/10 , [][][]\T1/pcr/m/n/10 trellis.currentLayout[][][][]\T1/ptm/m/n/10 , [2871] Underfull \vbox (badness 10000) has occurred while \output is active [2872] [2873] Underfull \hbox (badness 4242) in paragraph at lines 6356--6361 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- [2874] [2875] Underfull \hbox (badness 3601) in paragraph at lines 6472--6477 []\T1/ptm/m/n/10 Creates Box and Whisker plot of []\T1/pcr/m/n/10 x []\T1/ptm/m /n/10 for ev-ery level of []\T1/pcr/m/n/10 y []\T1/ptm/m/n/10 (or the other way round Underfull \hbox (badness 2486) in paragraph at lines 6472--6477 \T1/ptm/m/n/10 if []\T1/pcr/m/n/10 horizontal=FALSE[]\T1/ptm/m/n/10 ). By de-fa ult, the ac-tual box-plot statis-tics are cal-cu-lated us-ing [2876] Overfull \hbox (60.78088pt too wide) in paragraph at lines 6558--6558 [] \T1/pcr/m/n/10 shade.colors.palette = trellis.par.get("shade.co lors")$palette,[] [2877] [2878] [2879] Underfull \hbox (badness 10000) in paragraph at lines 6757--6761 []\T1/ptm/m/n/10 All three num-bers should be be-tween 0 and 1. The Underfull \hbox (badness 10000) in paragraph at lines 6762--6764 []\T1/ptm/m/n/10 numeric, be-tween 0 and 1, giv-ing a min-i-mum sat-u-ra-tion i n [2880] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6858--6858 [] \T1/pcr/m/n/9 shade.colors.palette = makeShadePalette(hcl.colors(1 0, "Inferno"),[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 6861--6861 [] \T1/pcr/m/n/9 shade.colors.palette = makeShadePalette(hcl.colors(1 0, "Dark Mint"),[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 6864--6864 [] \T1/pcr/m/n/9 shade.colors.palette = makeShadePalette(hcl.colors(1 0, "Harmonic"),[] [2881] [2882] [2883] [2884] [2885] Underfull \hbox (badness 1320) in paragraph at lines 7225--7232 []\T1/pcr/m/n/10 panel.levelplot.raster []\T1/ptm/m/n/10 is an al-ter-na-tive p anel func-tion that uses the raster draw- Underfull \hbox (badness 1715) in paragraph at lines 7225--7232 \T1/ptm/m/n/10 can only ren-der data on an eq-ui-s-paced grid), but can be more ef-fi-cient. When us-ing [2886] [2887] Overfull \hbox (0.78088pt too wide) in paragraph at lines 7300--7300 [] \T1/pcr/m/n/10 varname = NULL, limits, at = NULL, labels = NULL,[] Underfull \hbox (badness 10000) in paragraph at lines 7330--7334 []\T1/ptm/m/n/10 The panel func-tion used for the di-ag-o-nals. See ar-gu-ments to Underfull \hbox (badness 1584) in paragraph at lines 7330--7334 []\T1/pcr/m/n/10 diag.panel.splom []\T1/ptm/m/n/10 to know what ar-gu-ments thi s func-tion is passed [2888] [2889] Underfull \hbox (badness 10000) in paragraph at lines 7435--7438 \T1/ptm/m/n/10 and []\T1/pcr/m/n/10 diag.panel []\T1/ptm/m/n/10 from []\T1/pcr/ m/n/10 panel.pairs[]\T1/ptm/m/n/10 . Cur-rently ig-nored by Overfull \hbox (101.58032pt too wide) in paragraph at lines 7460--7460 [] \T1/pcr/m/n/9 function(i,j) hcl.colors(11)[i+j-1]) ## rainbow( 11, start=.12, end=.5)[i+j-1])[] [2890] [2891] Underfull \hbox (badness 2012) in paragraph at lines 7601--7604 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2892] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7647--7647 [] \T1/pcr/m/n/9 panel.qqmath(..., f.value = ppoints(100), ta ils.n = 50))[] [2893] [2894] Underfull \hbox (badness 1939) in paragraph at lines 7836--7844 []\T1/pcr/m/n/10 "lm" []\T1/ptm/m/n/10 adds a lin-ear re-gres-sion line (same a s [][][]\T1/pcr/m/n/10 panel.lmline[][][][]\T1/ptm/m/n/10 , ex-cept Underfull \hbox (badness 1163) in paragraph at lines 7836--7844 \T1/ptm/m/n/10 for de-fault graph-i-cal pa-ram-e-ters). []\T1/pcr/m/n/10 "loess " []\T1/ptm/m/n/10 adds a loess fit (same as [2895] Underfull \hbox (badness 2772) in paragraph at lines 7859--7862 []\T1/ptm/m/n/10 Most gen-er-ally, []\T1/pcr/m/n/10 grid []\T1/ptm/m/n/10 can b e a list of ar-gu-ments to be sup-plied to [2896] Overfull \hbox (25.98041pt too wide) in paragraph at lines 7930--7930 [] \T1/pcr/m/n/9 ylab = list(c("horizontal=TRUE", "horizontal=FALSE"), y = c(1/6, 4/6)),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 7940--7940 [] \T1/pcr/m/n/9 scales = list(alternating = c(0, 2), tck = c(0, 0.7), d raw = FALSE),[] [2897] Overfull \hbox (12.78088pt too wide) in paragraph at lines 8025--8025 [] \T1/pcr/m/n/10 font, fontfamily, fontface, cex, ..., identifier, nam e.type)[] Overfull \hbox (84.78088pt too wide) in paragraph at lines 8044--8044 [] \T1/pcr/m/n/10 adj = c(0.5, 0.5), pos = NULL, offset = 0.5, ..., ide ntifier, name.type)[] Underfull \vbox (badness 10000) has occurred while \output is active [2898] Underfull \hbox (badness 6428) in paragraph at lines 8092--8092 []\T1/pcr/m/n/10 col[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 alpha[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lty[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lwd[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 fill[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pch[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 cex[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lineheight[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 font[]\T1/ptm/m/n/10 , [2899] Overfull \hbox (63.78036pt too wide) in paragraph at lines 8180--8180 []\T1/pcr/m/n/9 xyplot(y ~ x, d, panel = panel.rect, col = 4, alpha = 0.5, wid th = 0.1, height = 0.1)[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 8187--8187 []\T1/pcr/m/n/9 xyplot(y ~ x, d, panel = panel.polygon, col = 4, alpha = 0.5, rule = "evenodd")[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 8189--8189 []\T1/pcr/m/n/9 ## Example adapted from https://journal.r-project.org/articles /RJ-2012-017/[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 8193--8193 []\T1/pcr/m/n/9 xyplot(y ~ x, data = d, panel = panel.polygon, rule = "none", col = "grey")[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 8194--8194 []\T1/pcr/m/n/9 xyplot(y ~ x, data = d, panel = panel.polypath, rule = "windin g", col = "grey")[] [2900] Overfull \hbox (31.3804pt too wide) in paragraph at lines 8195--8195 []\T1/pcr/m/n/9 xyplot(y ~ x, data = d, panel = panel.polypath, rule = "evenod d", col = "grey")[] Overfull \hbox (66.78088pt too wide) in paragraph at lines 8254--8254 []\T1/pcr/m/n/10 panel.grid(h=3, v=3, col, col.line, lty, lwd, x, y, ..., iden tifier = "grid")[] [2901] Underfull \hbox (badness 1436) in paragraph at lines 8309--8315 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for [2902] [2903] Overfull \hbox (42.18039pt too wide) in paragraph at lines 8439--8439 [] \T1/pcr/m/n/9 panel.superpose(x, y, ..., panel.groups = panel.ave rage, grid = FALSE,[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 8453--8453 [] \T1/pcr/m/n/9 args = list(mean = mean(x), sd = sd(x)), ...)[] [2904] [2905] [2906] [2907] [2908] [2909] Underfull \hbox (badness 10000) in paragraph at lines 8878--8881 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to []\T1/pcr/m/n/10 panel.super pose Underfull \hbox (badness 10000) in paragraph at lines 8878--8881 []\T1/ptm/m/n/10 from []\T1/pcr/m/n/10 panel.superpose.2[]\T1/ptm/m/n/10 , and to []\T1/pcr/m/n/10 panel.groups []\T1/ptm/m/n/10 from [2910] [2911] Overfull \hbox (24.78088pt too wide) in paragraph at lines 9053--9053 []\T1/pcr/m/n/10 prepanel.default.bwplot(x, y, horizontal, nlevels, origin, st ack, ...)[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 9054--9054 []\T1/pcr/m/n/10 prepanel.default.histogram(x, breaks, equal.widths, type, nin t, ...)[] [2912] Overfull \hbox (30.78088pt too wide) in paragraph at lines 9066--9066 []\T1/pcr/m/n/10 prepanel.default.densityplot(x, darg, groups, weights, subscr ipts, ...)[] Underfull \hbox (badness 3118) in paragraph at lines 9085--9088 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. []\T1/pcr/m/n/10 type [ ]\T1/ptm/m/n/10 has a dif-fer-ent mean-ing in [2913] Underfull \hbox (badness 1515) in paragraph at lines 9160--9164 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2914] [2915] Underfull \hbox (badness 6316) in paragraph at lines 9266--9271 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in [2916] Overfull \hbox (47.58038pt too wide) in paragraph at lines 9376--9376 [] \T1/pcr/m/n/9 ans$bottom$labels$labels <- parse(text = ans$b ottom$labels$labels)[] [2917] [2918] Overfull \hbox (9.78043pt too wide) in paragraph at lines 9515--9515 []\T1/pcr/m/n/9 xyplot(sunspot.year ~ time(sunspot.year) | equal.count(time(su nspot.year)),[] [2919] Underfull \hbox (badness 1028) in paragraph at lines 9574--9578 \T1/pcr/m/n/10 condition []\T1/ptm/m/n/10 for 2-D, and []\T1/pcr/m/n/10 left, r ight.x, right.y, left.name, right.x.name, [2920] [2921] [2922] [2923] [2924] [2925] [2926] Underfull \hbox (badness 7238) in paragraph at lines 10018--10022 []\T1/ptm/m/n/10 Factor with lev-els []\T1/pcr/m/n/10 "Svansota"[]\T1/ptm/m/n/1 0 , []\T1/pcr/m/n/10 "No. 462"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Manchuria"[] \T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "No. 475"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 10018--10022 []\T1/pcr/m/n/10 "Velvet"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Peatland"[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 "Glabron"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "No. 4 57"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Wisconsin No. 38"[]\T1/ptm/m/n/10 , [2927] [2928] [2929]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been already used, duplicate ignored \relax l.10249 \aliasA{melanoma}{H\_melanoma}{melanoma} [2930] [2931] [2932] Underfull \hbox (badness 10000) in paragraph at lines 10411--10416 \T1/pcr/m/n/10 diseases[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Diabetes[]\T1/ptm/m/ n/10 , []\T1/pcr/m/n/10 Flu and pneumonia[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 He art disease[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Lower Overfull \hbox (9.78043pt too wide) in paragraph at lines 10484--10484 [] \T1/pcr/m/n/9 par.settings = simpleTheme(pch = 16), auto.key = list( columns = 2),[] [2933] [2934]) (./mgcv-pkg.tex Chapter 24. [2935] [2936] Overfull \hbox (6.78088pt too wide) in paragraph at lines 160--160 []\T1/pcr/m/n/10 bam(formula,family=gaussian(),data=list(),weights=NULL,subset =NULL, Overfull \hbox (18.78088pt too wide) in paragraph at lines 163--163 [] \T1/pcr/m/n/10 paraPen=NULL,chunk.size=10000,rho=0,AR.start=NULL,discret e=FALSE,[] [2937] Overfull \hbox (48.78088pt too wide) in paragraph at lines 165--165 [] \T1/pcr/m/n/10 coef=NULL,drop.unused.levels=TRUE,G=NULL,fit=TRUE,drop.in tercept=NULL,[] Underfull \hbox (badness 1142) in paragraph at lines 185--189 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 210--215 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2938] [2939] [2940] [2941] Underfull \hbox (badness 10000) in paragraph at lines 382--389 [][][]\T1/pcr/m/n/10 mgcv.parallel[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gamObject[][][][]\T1 /ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/ptm/m/n/10 , [][][]\T1 /pcr/m/n/10 smooth.terms[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 382--389 [][][]\T1/pcr/m/n/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1/ pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][] [][]predict. gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 382--389 [][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 g am.side[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.selection[][][][]\T1/p tm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.control[][][] [][]gam.check[][][][]\T1/ptm /m/n/10 , [2942] Overfull \hbox (4.38043pt too wide) in paragraph at lines 425--425 []\T1/pcr/m/n/9 system.time(b2 <- bam(y ~ s(x0,bs=bs,k=k)+s(x1,bs=bs,k=k)+s(x2 ,bs=bs,k=k)+[] [2943] [2944] [2945] Underfull \hbox (badness 2922) in paragraph at lines 637--638 []\T1/ptm/m/n/10 The link func-tion: one of []\T1/pcr/m/n/10 "logit"[]\T1/ptm/m /n/10 , []\T1/pcr/m/n/10 "probit"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cloglog" []\T1/ptm/m/n/10 and [2946] [2947] Underfull \hbox (badness 1406) in paragraph at lines 707--708 []\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t ing en-vi-ron-ment vari-able [2948] [2949] Underfull \hbox (badness 1158) in paragraph at lines 817--819 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion [2950] Underfull \hbox (badness 1259) in paragraph at lines 880--881 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2951] Underfull \vbox (badness 10000) has occurred while \output is active [2952] [2953] [2954] [2955] [2956] [2957] [2958] [2959] [2960] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1423--1423 []\T1/pcr/m/n/9 lines(b$family$data$tr,exp(-b$family$data$h + 2*b$family$data$ q^.5),col=2)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1424--1424 []\T1/pcr/m/n/9 lines(b$family$data$tr,exp(-b$family$data$h - 2*b$family$data$ q^.5),col=2)[] [2961] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1441--1441 [] \T1/pcr/m/n/9 plot(b$y[oy],rs[oy,ii[1]],ylim=c(-3,3),type="l",ylab="scor e residuals",[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1453--1453 []\T1/pcr/m/n/9 bs <- gam(cbind(time,strata)~s(age,by=sex)+sex+s(nodes)+perfor +rx+obstruct[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1462--1462 []\T1/pcr/m/n/9 if (i==1) plot(bs$family$data$tr[ind],exp(-bs$family$data$h[in d]),type="l",[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1464--1464 [] \T1/pcr/m/n/9 lines(bs$family$data$tr[ind],exp(-bs$family$data$h[ind]) ,lwd=2,col=i)[] Underfull \vbox (badness 10000) has occurred while \output is active [2962] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1495--1495 []\T1/pcr/m/n/9 b <- gam(t~s(x0)+s(x1)+s(x2,k=15)+s(x3),family=cox.ph,weights= d,data=surv)[] [2963] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1578--1578 [] \T1/pcr/m/n/9 if (inter) prg <- txtProgressBar(min = 0, max = length(sid), initial = 0,[] [2964] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1589--1589 [] \T1/pcr/m/n/9 if (um[[et]][1]==max(tr)&&um[[status]][1]==1) um[[event]][ nrow(um)] <- 1[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1628--1628 []\T1/pcr/m/n/9 pd <- data.frame(lapply(X=di,FUN=app,t=di$day,to=te)) ## inter polate to te[] [2965] [2966] [2967] [2968] [2969] [2970] [2971] [2972] [2973] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2116--2116 []\T1/pcr/m/n/9 bd <- bam(y~s(x0)+ s(x1) + s(x1,fac,bs="sz",k=5)+s(x2,k=20),di screte=TRUE)[] [2974] [2975] [2976] [2977] Overfull \hbox (30.78088pt too wide) in paragraph at lines 2352--2352 []\T1/pcr/m/n/10 fixDependence(X1,X2,tol=.Machine$double.eps^.5,rank.def=0,str ict=FALSE) [2978] [2979] Underfull \vbox (badness 2302) has occurred while \output is active [2980] [2981] [2982] [2983] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2757--2757 []\T1/pcr/m/n/10 gam(formula,family=gaussian(),data=list(),weights=NULL,subset =NULL,[] Underfull \hbox (badness 1728) in paragraph at lines 2769--2772 []\T1/ptm/m/n/10 A GAM for-mula, or a list of for-mu-lae (see [][][]\T1/pcr/m/n /10 formula.gam[][][] []\T1/ptm/m/n/10 and also [2984] Underfull \hbox (badness 1142) in paragraph at lines 2782--2786 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 2808--2814 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2985] [2986] Underfull \hbox (badness 1389) in paragraph at lines 2885--2886 []\T1/ptm/m/n/10 A list spec-i-fy-ing the neigh-bour-hood struc-ture for [][][] \T1/pcr/m/n/10 NCV[][][][]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 a []\T1/ptm/m/n/10 is the vec-tor Underfull \hbox (badness 2495) in paragraph at lines 2885--2886 []\T1/ptm/m/n/10 gives the points dropped for the neigh-bour-hood []\T1/pcr/m/n /10 j[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 d []\T1/ptm/m/n/10 is the vec-tor Underfull \hbox (badness 1558) in paragraph at lines 2885--2886 \T1/ptm/m/n/10 of in-dices of points to pre-dict, with cor-re-spond-ing end-poi nts []\T1/pcr/m/n/10 md[]\T1/ptm/m/n/10 . So [2987] Underfull \hbox (badness 1043) in paragraph at lines 2973--2979 \T1/ptm/m/n/10 eral lin-ear func-tion-als of smooths, via the sum-ma-tion con-v en-tion mech-a-nism de-scribed in [2988] [2989] Underfull \hbox (badness 10000) in paragraph at lines 3111--3117 [][][]\T1/pcr/m/n/10 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gamObject[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/pt m/m/n/10 , [][][]\T1/pcr/m/n/10 smooth.terms[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3111--3117 [][][]\T1/pcr/m/n/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1/ pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][] [][]predict. gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3111--3117 [][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 g am.side[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.selection[][][][]\T1/p tm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.control[][][] [][]gam.check[][][][]\T1/ptm /m/n/10 , [2990] Underfull \vbox (badness 10000) has occurred while \output is active [2991] Underfull \vbox (badness 10000) has occurred while \output is active [2992] Underfull \vbox (badness 10000) has occurred while \output is active [2993] [2994] [2995] Overfull \hbox (0.78088pt too wide) in paragraph at lines 3428--3428 []\T1/pcr/m/n/10 gam.control(nthreads=1,ncv.threads=1,irls.reg=0.0,epsilon = 1 e-07, Overfull \hbox (0.78088pt too wide) in paragraph at lines 3429--3429 [] \T1/pcr/m/n/10 maxit = 200,mgcv.tol=1e-7,mgcv.half=15, trace = F ALSE,[] [2996] [2997] [2998] [2999] [3000] Overfull \hbox (6.78088pt too wide) in paragraph at lines 3767--3767 [] \T1/pcr/m/n/10 mustart = NULL, offset = rep(0, nobs), U1 = diag(nco l(x)),[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 3770--3770 [] \T1/pcr/m/n/10 printWarn=TRUE,scoreType="REML",null.coef=rep(0,ncol (x)),[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 3771--3771 [] \T1/pcr/m/n/10 pearson.extra=0,dev.extra=0,n.true=-1,Sl=NULL,nei=NU LL,...)[] [3001] [3002] [3003] [3004] [3005] [3006] [3007] [3008] Underfull \hbox (badness 5189) in paragraph at lines 4249--4253 []\T1/ptm/m/n/10 Random ef-fects can be added to []\T1/pcr/m/n/10 gam []\T1/ptm /m/n/10 mod-els us-ing []\T1/pcr/m/n/10 s(...,bs="re") []\T1/ptm/m/n/10 terms ( see [3009] [3010] Overfull \hbox (9.78043pt too wide) in paragraph at lines 4366--4366 []\T1/pcr/m/n/9 rm1 <- gam(y ~ s(fac,bs="re")+s(x0)+s(x1)+s(x2)+s(x3),data=dat ,method="ML")[] Underfull \vbox (badness 10000) has occurred while \output is active [3011] [3012] [3013] Underfull \hbox (badness 1184) in paragraph at lines 4536--4540 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [3014] [3015] [3016] [3017] [3018] [3019] [3020] Overfull \hbox (25.98041pt too wide) in paragraph at lines 4982--4982 [] \T1/pcr/m/n/9 mod <- gam(y~s(a,bs="re")+s(b,bs="re")+s(a,b,bs="re")+s(x0,i d=1)+s(x1,id=1)+[] [3021] [3022] [3023] Overfull \hbox (18.78088pt too wide) in paragraph at lines 5132--5132 []\T1/pcr/m/n/10 gamlss.gH(X, jj, l1, l2, i2, l3 = 0, i3 = 0, l4 = 0, i4 = 0, d1b = 0, [3024] [3025] Underfull \hbox (badness 1142) in paragraph at lines 5259--5263 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [3026] Underfull \hbox (badness 10000) in paragraph at lines 5331--5340 []\T1/ptm/m/n/10 In the event of []\T1/pcr/m/n/10 lme []\T1/ptm/m/n/10 con-ver- gence fail-ures, con-sider mod-i-fy-ing [3027] [3028] Underfull \hbox (badness 5970) in paragraph at lines 5448--5454 [][][]\T1/pcr/m/n/10 magic[][][] []\T1/ptm/m/n/10 for an al-ter-na-tive for cor -re-lated data, [][][]\T1/pcr/m/n/10 te[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m /n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.gam[][][][]\T1/ptm /m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 1418) in paragraph at lines 5448--5454 [][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 n egbin[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 vis.gam[][][][]\T1/ptm/m/n/1 0 ,[][][]\T1/pcr/m/n/10 pdTens[][][][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 gamm4 [ ]\T1/ptm/m/n/10 ( [][]$\T1/pcr/m/n/10 https : / / cran . r-[]project . [3029] Underfull \vbox (badness 10000) has occurred while \output is active [3030] [3031] [3032] [3033] Underfull \hbox (badness 1577) in paragraph at lines 5797--5800 []\T1/ptm/m/n/10 If `outer' it-er-a-tion has been used to fit the model (see [] [][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 ar-gu-ment Underfull \hbox (badness 2181) in paragraph at lines 5804--5805 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [3034] [3035] [3036] [3037] [3038] [3039] [3040] [3041] [3042] Overfull \hbox (6.78088pt too wide) in paragraph at lines 6307--6307 []\T1/pcr/m/n/10 ginla(G,A=NULL,nk=16,nb=100,J=1,interactive=FALSE,integ=0,app rox=0) Underfull \hbox (badness 6708) in paragraph at lines 6313--6314 []\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by []\T1/pcr/m/n/10 gam(.. .,fit=FALSE) []\T1/ptm/m/n/10 or [3043] [3044] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6362--6362 [] \T1/pcr/m/n/9 ## example using a scale location model for the motorcycle d ata. A simple[] [3045] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6387--6387 [] \T1/pcr/m/n/9 } else lines(xg,predict(din,xg)$y,col=lcol[j],lwd=lwd[j] ,lty=lty[j])[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6416--6416 [] \T1/pcr/m/n/9 fv <- predict(b,se=TRUE) ## usual Gaussian approximation, fo r comparison[] [3046] [3047] [3048] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6538--6538 [] \T1/pcr/m/n/9 (1+exp(-10*(x[201:300]-.5)))-0.9933071) + z*(1-z)*5 + r norm(100)*.4[] [3049] [3050] [3051] [3052] [3053] Overfull \hbox (24.78088pt too wide) in paragraph at lines 6875--6875 []\T1/pcr/m/n/10 jagam(formula,family=gaussian,data=list(),file,weights=NULL,n a.action, Overfull \hbox (36.78088pt too wide) in paragraph at lines 6877--6877 []\T1/pcr/m/n/10 control=gam.control(),centred=TRUE,sp.prior = "gamma",diagona lize=FALSE)[] Underfull \hbox (badness 1142) in paragraph at lines 6898--6902 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [3054] [3055] [3056] [3057] [3058] [3059] [3060] Overfull \hbox (72.78088pt too wide) in paragraph at lines 7221--7221 []\T1/pcr/m/n/10 ldTweedie(y,mu=y,p=1.5,phi=1,rho=NA,theta=NA,a=1.001,b=1.999, all.derivs=FALSE) [3061] [3062] [3063] Underfull \vbox (badness 10000) has occurred while \output is active [3064] Underfull \vbox (badness 10000) has occurred while \output is active [3065] [3066] [3067] Overfull \hbox (66.78088pt too wide) in paragraph at lines 7630--7630 []\T1/pcr/m/n/10 lp(c,A,b,C=NULL,d=NULL,Bi=NULL,maxit=max(1000, nrow(A) * 10), phase1 = FALSE) [3068] [3069] Overfull \hbox (52.98038pt too wide) in paragraph at lines 7752--7752 []\T1/pcr/m/n/9 "The world is ruled by idiots because only an idiot would want to rule the world.",[] [3070] Overfull \hbox (36.78088pt too wide) in paragraph at lines 7779--7779 [] \T1/pcr/m/n/10 .Machine$double.eps^0.5),extra.rss=0,n.score=length(y), nthreads=1)[] [3071] [3072] [3073] [3074] [3075] [3076] [3077] Underfull \vbox (badness 1163) has occurred while \output is active [3078] [3079] [3080] Underfull \hbox (badness 1242) in paragraph at lines 8388--8389 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [3081] [3082] Overfull \hbox (20.58041pt too wide) in paragraph at lines 8475--8475 []\T1/pcr/m/n/9 ## Alternative, better scaling example, using the discrete opt ion with bam...[] [3083] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8538--8538 []\T1/pcr/m/n/9 for (sim in c(1,7)) { ## cycle over uncorrelated and correlate d covariates[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8557--8557 [] \T1/pcr/m/n/9 dat1[[dname[i]]][dat1[[by.name]]] <- mean(dat1[[dname[i]]] ,na.rm=TRUE)[] [3084] [3085] [3086] [3087] [3088] [3089] [3090] [3091] [3092] [3093] [3094] [3095] [3096] [3097] [3098] [3099] [3100] [3101] [3102] [3103] [3104] Underfull \vbox (badness 10000) has occurred while \output is active [3105] [3106] Underfull \hbox (badness 10000) in paragraph at lines 9877--9880 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: []\T1/pcr/m/n/10 Dim .pdIndot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 coef.pdIdnot[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9877--9880 []\T1/pcr/m/n/10 corMatrix.pdIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 logDet.pd Idnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdConstruct.pdIdnot[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3118) in paragraph at lines 9877--9880 []\T1/pcr/m/n/10 pdFactor.pdIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdMatrix.p dIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 solve.pdIdnot[]\T1/ptm/m/n/10 , []\T1 /pcr/m/n/10 summary.pdIdnot[]\T1/ptm/m/n/10 . [3107] Underfull \hbox (badness 10000) in paragraph at lines 9933--9936 []\T1/ptm/m/n/10 These func-tions ([]\T1/pcr/m/n/10 pdTens[]\T1/ptm/m/n/10 , [] \T1/pcr/m/n/10 pdConstruct.pdTens[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdFactor.p dTens[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3108) in paragraph at lines 9933--9936 []\T1/pcr/m/n/10 pdMatrix.pdTens[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 coef.pdTens []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 summary.pdTens[]\T1/ptm/m/n/10 ) would n ot nor-mally be [3108] [3109] [3110] Overfull \hbox (18.78088pt too wide) in paragraph at lines 10153--10153 []\T1/pcr/m/n/10 plot(x,residuals=FALSE,rug=NULL,se=TRUE,pages=0,select=NULL,s cale=-1,[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 10157--10157 [] \T1/pcr/m/n/10 trans=I,seWithMean=FALSE,unconditional=FALSE,by.resi ds=FALSE,[] [3111] [3112] [3113] Underfull \hbox (badness 1629) in paragraph at lines 10313--10318 []\T1/ptm/m/n/10 just won't let you do it. In this case, the quick-est op-tion is some-times to clone the [3114] [3115] [3116] [3117] Overfull \hbox (84.78088pt too wide) in paragraph at lines 10525--10525 [] \T1/pcr/m/n/10 na.action=na.pass,cluster=NULL,discrete=TRUE,n.thread s=1,gc.level=0,...)[] Underfull \hbox (badness 1062) in paragraph at lines 10562--10566 []\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 type=="terms" []\T1/ptm/m/n/10 or []\T1/pc r/m/n/10 type="iterms" []\T1/ptm/m/n/10 then terms (smooth or para- [3118] [3119] Overfull \hbox (6.78088pt too wide) in paragraph at lines 10695--10695 [] \T1/pcr/m/n/10 na.action=na.pass,unconditional=FALSE,iterms.type=NUL L,...)[] [3120] [3121] [3122] Overfull \hbox (20.58041pt too wide) in paragraph at lines 10856--10856 []\T1/pcr/m/n/9 x1 <- seq(.2,.8,length=m1);x2 <- seq(.2,.8,length=m2) ## margi nal grid points[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 10857--10857 []\T1/pcr/m/n/9 df <- data.frame(x0=rep(.5,n),x1=rep(x1,m2),x2=rep(x2,each=m1) ,x3=rep(0,n))[] [3123] Underfull \vbox (badness 10000) has occurred while \output is active [3124] Underfull \vbox (badness 10000) has occurred while \output is active [3125] Overfull \hbox (9.78043pt too wide) in paragraph at lines 10996--10996 [] \T1/pcr/m/n/9 Xi[,(i-1)*9+1:9+1] <- Xp[,(i-1)*9+1:9+1] ## Xi%*%coef(b) = s mooth deriv i[] Underfull \hbox (badness 1205) in paragraph at lines 11034--11035 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 11034--11035 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 11040--11045 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [3126] [3127] Underfull \hbox (badness 1205) in paragraph at lines 11124--11125 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 11124--11125 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [3128] Underfull \hbox (badness 10000) in paragraph at lines 11193--11196 []\T1/ptm/m/n/10 The smooth ob-ject will be largely what is re-turned from Underfull \hbox (badness 2057) in paragraph at lines 11193--11196 [][][]\T1/pcr/m/n/10 smooth.construct.so.smooth.spec[][][][]\T1/ptm/m/n/10 , al -though el-e-ments []\T1/pcr/m/n/10 X []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 S [ ]\T1/ptm/m/n/10 are not needed, [3129] [3130] Underfull \hbox (badness 1253) in paragraph at lines 11323--11325 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [3131] [3132] [3133] [3134] [3135] Underfull \hbox (badness 1946) in paragraph at lines 11576--11583 []\T1/ptm/m/n/10 The sec-ond method rep-re-sents the con-ven-tional ran-dom ef- fects in a GAM in the same Underfull \hbox (badness 2221) in paragraph at lines 11576--11583 \T1/ptm/m/n/10 way that the smooths are rep-re-sented --- as pe-nal-ized re-gre s-sion terms. This method Underfull \hbox (badness 2042) in paragraph at lines 11576--11583 \T1/ptm/m/n/10 can be used with [][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 by mak-ing use of []\T1/pcr/m/n/10 s(...,bs="re") []\T1/ptm/m/n/10 terms in a model: see Underfull \hbox (badness 2846) in paragraph at lines 11584--11587 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the []\T1/pcr/m/n /10 paraPen []\T1/ptm/m/n/10 ar-gu-ment to [][][]\T1/pcr/m/n/10 gam[][][] []\T1 /ptm/m/n/10 can be used: Underfull \hbox (badness 5862) in paragraph at lines 11584--11587 \T1/ptm/m/n/10 see [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/ptm/m/n/10 . If s mooth-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [3136] Overfull \hbox (9.78043pt too wide) in paragraph at lines 11650--11650 []\T1/pcr/m/n/9 rm1 <- gam(y ~ s(fac,bs="re")+s(x0)+s(x1)+s(x2)+s(x3),data=dat ,method="ML")[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 11660--11660 []\T1/pcr/m/n/9 ## The effect of the new factor levels (or any interaction inv olving them)[] [3137] Underfull \hbox (badness 10000) in paragraph at lines 11691--11694 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of []\T1/pcr/m/n/ 10 "deviance"[]\T1/ptm/m/n/10 , [3138] [3139] [3140] [3141] [3142] Overfull \hbox (36.78088pt too wide) in paragraph at lines 11993--11993 []\T1/pcr/m/n/10 s(..., k=-1,fx=FALSE,bs="tp",m=NA,by=NA,xt=NULL,id=NULL,sp=NU LL,pc=NULL) [3143] [3144] [3145] [3146] [3147] [3148] Overfull \hbox (9.78043pt too wide) in paragraph at lines 12366--12366 [] \T1/pcr/m/n/9 true <- mu + (del * sigma) * sinh((1/del) * asinh(qnorm(qq)) + (eps/del))[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 12380--12380 []\T1/pcr/m/n/9 b <- gam(list(accel~s(times, k=20, bs = "ad"), ~s(times, k = 1 0), ~1, ~1),[] Underfull \vbox (badness 10000) has occurred while \output is active [3149] [3150] Underfull \hbox (badness 3861) in paragraph at lines 12482--12485 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if Overfull \hbox (36.78088pt too wide) in paragraph at lines 12491--12491 []\T1/pcr/m/n/10 Sl.initial.repara(Sl, X, inverse = FALSE, both.sides = TRUE, cov = TRUE,[] [3151] Underfull \hbox (badness 10000) in paragraph at lines 12508--12512 []\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 inverse==TRUE []\T1/ptm/m/n/10 and []\T1/p cr/m/n/10 both.sides==FALSE []\T1/ptm/m/n/10 then the re- Underfull \hbox (badness 10000) in paragraph at lines 12548--12552 []\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 inverse==TRUE []\T1/ptm/m/n/10 and []\T1/p cr/m/n/10 both.sides==FALSE []\T1/ptm/m/n/10 then the re- [3152] Overfull \hbox (6.78088pt too wide) in paragraph at lines 12571--12571 []\T1/pcr/m/n/10 Sl.setup(G,cholesky=FALSE,no.repara=FALSE,sparse=FALSE,keepS= FALSE) [3153] [3154] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12695--12695 [] \T1/pcr/m/n/9 range(er$values-um$values[ind]);range(abs(er$vectors)-abs(um$ vectors[,ind]))[] Underfull \hbox (badness 1975) in paragraph at lines 12706--12711 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [3155] Underfull \hbox (badness 1803) in paragraph at lines 12783--12787 \T1/ptm/m/n/10 The last en-try will be the []\T1/pcr/m/n/10 by []\T1/ptm/m/n/10 vari-able, if []\T1/pcr/m/n/10 object$by []\T1/ptm/m/n/10 is not []\T1/pcr/m/n /10 "NA"[]\T1/ptm/m/n/10 . Underfull \hbox (badness 1502) in paragraph at lines 12795--12807 []\T1/pcr/m/n/10 cs.smooth.spec []\T1/ptm/m/n/10 (cu-bic re-gres-sion splines w ith shrinkage-to-zero); []\T1/pcr/m/n/10 cc.smooth.spec [3156] Underfull \hbox (badness 2401) in paragraph at lines 12812--12816 []\T1/ptm/m/n/10 method is used if there is no more spe-cific method avail-able . Plot meth-ods can be Underfull \hbox (badness 2970) in paragraph at lines 12812--12816 \T1/ptm/m/n/10 added for spe-cific smooth classes, see source code for []\T1/pc r/m/n/10 mgcv:::plot.sos.smooth[]\T1/ptm/m/n/10 , [3157] [3158] [3159] Underfull \hbox (badness 6876) in paragraph at lines 13007--13013 [][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use adap-tive smooths of on e or two vari-ables, spec-i-fied via terms like [3160] Underfull \hbox (badness 10000) in paragraph at lines 13048--13049 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3161] [3162] Underfull \hbox (badness 10000) in paragraph at lines 13166--13167 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3163] Overfull \hbox (4.38043pt too wide) in paragraph at lines 13220--13220 [] \T1/pcr/m/n/9 b <- gam(y~s(x0,bs=bs,m=c(4,2))+s(x1,bs=bs)+s(x2,k=15,bs=bs, m=c(4,3,0))+[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 13232--13232 [] \T1/pcr/m/n/9 ## now a model with first order penalty evaluated over (-.5, 1.5) (black)[] [3164] Overfull \hbox (9.78043pt too wide) in paragraph at lines 13244--13244 [] \T1/pcr/m/n/9 ## penalty defined on (-.5,1.5) gives plausible predictions and intervals[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 13249--13249 [] \T1/pcr/m/n/9 ## penalty defined on whole real line gives constant width i ntervals away[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 13255--13255 [] \T1/pcr/m/n/9 ## penalty defined only over the data interval (0,1) gives w ild and wide[] Overfull \hbox (3.70428pt too wide) in paragraph at lines 13256--13256 [] \T1/pcr/m/n/9 ## extrapolation since penalty has been \TS1/cmtt/m/n/9 `\T1 /pcr/m/n/9 turned off\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 outside data range:[] [3165] Underfull \hbox (badness 10000) in paragraph at lines 13325--13327 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a Underfull \hbox (badness 10000) in paragraph at lines 13325--13327 \T1/ptm/m/n/10 term []\T1/pcr/m/n/10 s(...,bs="cr",...)[]\T1/ptm/m/n/10 , []\T1 /pcr/m/n/10 s(...,bs="cs",...) []\T1/ptm/m/n/10 or [3166] [3167] Underfull \hbox (badness 10000) in paragraph at lines 13455--13456 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3168] [3169] Overfull \hbox (9.78043pt too wide) in paragraph at lines 13536--13536 []\T1/pcr/m/n/9 b <- gam(y~s(x,z,bs="ds",m=c(1,.5),k=50),data=data) ## first deriv penalty[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 13537--13537 []\T1/pcr/m/n/9 b1 <- gam(y~s(x,z,bs="ds",m=c(2,.5),k=50),data=data) ## modifi ed 2nd deriv[] [3170] [3171] Underfull \hbox (badness 10000) in paragraph at lines 13690--13691 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3172] [3173] [3174] [3175] [3176] Overfull \hbox (9.78043pt too wide) in paragraph at lines 13940--13940 []\T1/pcr/m/n/9 b <- gam(crime ~ s(district,bs="mrf",k=20,xt=xt),data=columb,m ethod="REML")[] [3177] Underfull \hbox (badness 10000) in paragraph at lines 14001--14003 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3178] [3179] Underfull \hbox (badness 10000) in paragraph at lines 14160--14163 []\T1/ptm/m/n/10 For the []\T1/pcr/m/n/10 smooth.construct []\T1/ptm/m/n/10 met hod a smooth spec-i-fi-ca-tion ob- Underfull \hbox (badness 3312) in paragraph at lines 14160--14163 \T1/ptm/m/n/10 ject, usu-ally gen-er-ated by a term []\T1/pcr/m/n/10 s(x,...,bs ="re",)[]\T1/ptm/m/n/10 . For the Underfull \hbox (badness 7099) in paragraph at lines 14160--14163 []\T1/pcr/m/n/10 predict.Matrix []\T1/ptm/m/n/10 method an ob-ject of class []\ T1/pcr/m/n/10 "random.effect" [3180] [3181] Overfull \hbox (4.38043pt too wide) in paragraph at lines 14246--14246 []\T1/pcr/m/n/9 b <- c(rnorm(nb/2)*2,rnorm(nb/2)*.5) ## random effect now with 2 variances[] [3182] Underfull \hbox (badness 10000) in paragraph at lines 14291--14297 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a Underfull \hbox (badness 7832) in paragraph at lines 14291--14297 []\T1/pcr/m/n/10 s(...,bs="so",xt=list(bnd=bnd,...)) []\T1/ptm/m/n/10 term in a []\T1/pcr/m/n/10 gam []\T1/ptm/m/n/10 for- [3183] [3184] [3185] Overfull \hbox (36.7804pt too wide) in paragraph at lines 14506--14506 []\T1/pcr/m/n/9 ## notice NULL element in \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 xt\TS1 /pcr/m/n/9 ' \T1/pcr/m/n/9 list - to indicate no xt object for "cr" basis...[] Underfull \vbox (badness 10000) has occurred while \output is active [3186] Underfull \vbox (badness 10000) has occurred while \output is active [3187] Underfull \hbox (badness 10000) in paragraph at lines 14609--14617 [][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths on th e sphere, via terms like Underfull \hbox (badness 10000) in paragraph at lines 14635--14636 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3188] [3189] [3190] Underfull \hbox (badness 7613) in paragraph at lines 14780--14783 []\T1/ptm/m/n/10 method an ob-ject of class []\T1/pcr/m/n/10 "sz.interaction" [ ]\T1/ptm/m/n/10 pro-duced by the [3191] Underfull \hbox (badness 1546) in paragraph at lines 14801--14802 []\T1/ptm/m/n/10 The terms can have a smooth-ing pa-ram-e-ter per smooth, or a sin-gle smooth-ing pa-ram-e- Overfull \hbox (128.58029pt too wide) in paragraph at lines 14847--14847 []\T1/pcr/m/n/9 b <- gam(y ~ s(x)+s(f1,x,bs="sz")+s(f2,x,bs="sz")+s(f1,f2,x,bs ="sz",id=1),data=dat,method="REML")[] [3192] [3193] [3194] Underfull \hbox (badness 3396) in paragraph at lines 14993--14996 [][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths of an y num-ber of vari-ables, spec-i-fied via terms like Underfull \hbox (badness 10000) in paragraph at lines 15038--15040 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3195] [3196] [3197] [3198] [3199] [3200] Underfull \hbox (badness 10000) in paragraph at lines 15329--15331 []\T1/pcr/m/n/10 bs="fs" []\T1/ptm/m/n/10 A spe-cial smoother class (see [3201] Underfull \hbox (badness 10000) in paragraph at lines 15363--15367 [][][]\T1/pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][][]\ T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 t2[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m /n/10 tprs[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Duchon.spline[][][][]\T 1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cubic.regression.spline[][][][]\T1/ptm/m/n/ 10 , Underfull \hbox (badness 10000) in paragraph at lines 15363--15367 [][][]\T1/pcr/m/n/10 p.spline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 d.sp line[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 mrf[][][][]\T1/ptm/m/n/10 , [ ][][]\T1/pcr/m/n/10 soap[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Spherical .Spline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 adaptive.smooth[][][][]\T1 /ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15363--15367 [][][]\T1/pcr/m/n/10 user.defined.smooth[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/ m/n/10 smooth.construct.re.smooth.spec[][][][]\T1/ptm/m/n/10 , [3202] [3203] [3204] [3205] [3206] Underfull \hbox (badness 2158) in paragraph at lines 15652--15652 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [3207] Overfull \hbox (48.78088pt too wide) in paragraph at lines 15731--15731 []\T1/pcr/m/n/10 spasm.sp(object,sp,w=rep(1,object$nobs),get.trH=TRUE,block=0, centre=FALSE)[] [3208] [3209] Overfull \hbox (12.78088pt too wide) in paragraph at lines 15865--15865 [] \T1/pcr/m/n/10 signif.stars = getOption("show.signif.stars "),...)[] [3210] [3211] Underfull \hbox (badness 4846) in paragraph at lines 15996--15999 []\T1/ptm/m/n/10 The es-ti-mated co-vari-ance ma-trix of the pa-ram-e-ters (or es-ti-ma-tors if [3212] [3213] [3214] [3215] [3216] [3217] [3218] [3219] [3220] [3221] [3222] [3223] [3224] [3225] [3226] [3227] [3228] [3229] [3230] [3231] Overfull \hbox (120.78088pt too wide) in paragraph at lines 17220--17220 []\T1/pcr/m/n/10 vcov(object, sandwich=FALSE, freq = FALSE, dispersion = NULL, unconditional=FALSE, ...)[] [3232] Underfull \hbox (badness 1715) in paragraph at lines 17242--17243 []\T1/ptm/m/n/10 Basically, just ex-tracts []\T1/pcr/m/n/10 object$Ve[]\T1/ptm/ m/n/10 , []\T1/pcr/m/n/10 object$Vp []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 object $Vc []\T1/ptm/m/n/10 (if avail-able) from a [3233] [3234] [3235] Overfull \hbox (54.78088pt too wide) in paragraph at lines 17433--17433 []\T1/pcr/m/n/10 XWXd(X,w,k,ks,ts,dt,v,qc,nthreads=1,drop=NULL,ar.stop=-1,ar.r ow=-1,ar.w=-1, Overfull \hbox (48.78088pt too wide) in paragraph at lines 17435--17435 []\T1/pcr/m/n/10 XWyd(X,w,y,k,ks,ts,dt,v,qc,drop=NULL,ar.stop=-1,ar.row=-1,ar. w=-1,lt=NULL)[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 17437--17437 []\T1/pcr/m/n/10 diagXVXd(X,V,k,ks,ts,dt,v,qc,drop=NULL,nthreads=1,lt=NULL,rt= NULL)[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 17438--17438 []\T1/pcr/m/n/10 ijXVXd(i,j,X,V,k,ks,ts,dt,v,qc,drop=NULL,nthreads=1,lt=NULL,r t=NULL)[] [3236] Underfull \hbox (badness 10000) in paragraph at lines 17458--17459 []\T1/ptm/m/n/10 Negative to ig-nore. Oth-er-wise sum rows Underfull \hbox (badness 1668) in paragraph at lines 17458--17459 []\T1/pcr/m/n/10 (ar.stop[i-1]+1):ar.stop[i] []\T1/ptm/m/n/10 of the rows se-le cted by []\T1/pcr/m/n/10 ar.row [3237] [3238] [3239] [3240] Overfull \hbox (20.58041pt too wide) in paragraph at lines 17656--17656 []\T1/pcr/m/n/9 ## 1. If the zero inflation rate becomes decoupled from the li near predictor,[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 17657--17657 []\T1/pcr/m/n/9 ## it is possible for the linear predictor to be almost unboun ded in regions[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 17669--17669 []\T1/pcr/m/n/9 ## 3. Refit fixing the theta parameters at their estimated val ues, to check we[] [3241] [3242] [3243]) (./nlme-pkg.tex [3244] Chapter 25. [3245] Underfull \hbox (badness 1009) in paragraph at lines 78--87 []\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served - fit-ted) are used; else, if [3246] Underfull \hbox (badness 1009) in paragraph at lines 168--177 []\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served - fit-ted) are used; else, if [3247] [3248] [3249] [3250] Overfull \hbox (4.38043pt too wide) in paragraph at lines 448--448 [] \T1/pcr/m/n/9 lme(rate ~(pressure + I(pressure^2) + I(pressure^3) + I(pres sure^4))*QB,[] [3251] [3252] [3253] Overfull \hbox (20.58041pt too wide) in paragraph at lines 589--589 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 251-254 --------------------------- ---------------[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 605--605 []\T1/pcr/m/n/9 # Compare an "lme" object with a "gls" object (test would be n on-sensical!)[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 608--608 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 222-225 --------------------------- ---------------[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 615--615 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 352-365 --------------------------- ---------------[] [3254] [3255] [3256] [3257] [3258] [3259] [3260] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1078--1078 [] \T1/pcr/m/n/9 y = "Distance from pituitary to pterygomaxil lary fissure"),[] [3261] [3262] Underfull \hbox (badness 5446) in paragraph at lines 1140--1142 []\T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 http://stat.gamma.rug.nl/snijders/multilevel .htm[]\T1/ptm/m/n/10 ', the first edi-tion of [3263] [3264] [3265] [3266] [3267] [3268] [3269] Underfull \hbox (badness 10000) in paragraph at lines 1617--1620 [][][]\T1/pcr/m/n/10 lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fixed. effects.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 ranef.lmList[][][][ ]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.ranef.lmList[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 3780) in paragraph at lines 1634--1636 []\T1/ptm/m/n/10 This method func-tion ex-tracts the co-ef-fi-cients as-so-ci-a ted with each com-po-nent of the [3270] [3271] [3272] [3273] [3274] Underfull \hbox (badness 2042) in paragraph at lines 1975--1981 \T1/ptm/m/n/10 is in-ner to the []\T1/pcr/m/n/10 displayLevel []\T1/ptm/m/n/10 group-ing fac-tor. If equal to []\T1/pcr/m/n/10 TRUE[]\T1/ptm/m/n/10 , [3275] [3276] Underfull \hbox (badness 1132) in paragraph at lines 2127--2129 []\T1/ptm/m/n/10 fitted model ob-jects, from which pre-dic-tions can be ex-trac ted us-ing the [3277] [3278] Underfull \hbox (badness 4168) in paragraph at lines 2238--2244 [][][]\T1/pcr/m/n/10 ACF.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corAR MA[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/pcr/m/n/10 Dim.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m /n/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [3279] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2263--2263 [] \T1/pcr/m/n/9 gls(rate ~(pressure + I(pressure^2) + I(pressure^3) + I(pres sure^4))*QB,[] [3280] [3281] [3282] [3283] [3284] [3285] [3286] [3287] Underfull \hbox (badness 10000) in paragraph at lines 2816--2820 [][][]\T1/pcr/m/n/10 corFactor[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cor Matrix.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 recalc.corStruct[ ][][][]\T1/ptm/m/n/10 , [3288] [3289] [3290] [3291] [3292] [3293] [3294] [3295] [3296] [3297] [3298] [3299] Underfull \hbox (badness 6493) in paragraph at lines 3548--3556 [][][]\T1/pcr/m/n/10 corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corGau s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corLin[][][][]\T1/ptm/m/n/10 , [ ][][]\T1/pcr/m/n/10 corRatio[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corSp her[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.corStruct[][][][]\T 1/ptm/m/n/10 , [3300] [3301] [3302] [3303] [3304] [3305] [3306] [3307] [3308] [3309] [3310] [3311] [3312] [3313] [3314] [3315] [3316] [3317] [3318] [3319] [3320] [3321] [3322] Underfull \hbox (badness 10000) in paragraph at lines 5116--5120 [][][]\T1/pcr/m/n/10 getCovariate.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/p cr/m/n/10 getCovariate.data.frame[][][][]\T1/ptm/m/n/10 , [3323] [3324] [3325] [3326] [3327] [3328] [3329] Underfull \hbox (badness 10000) in paragraph at lines 5540--5543 [][][]\T1/pcr/m/n/10 getGroups.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/ m/n/10 getGroups.data.frame[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 getGro ups.gls[][][][]\T1/ptm/m/n/10 , [3330] [3331] [3332] [3333] [3334] [3335] [3336] [3337] [3338] Underfull \hbox (badness 2799) in paragraph at lines 6044--6050 \T1/ptm/m/n/10 covariance ma-trix, ei-ther []\T1/pcr/m/n/10 "random.effects" [] \T1/ptm/m/n/10 for the random-effects [3339] Underfull \hbox (badness 7133) in paragraph at lines 6105--6109 []\T1/ptm/m/n/10 an op-tional data frame con-tain-ing the vari-ables named in [ ]\T1/pcr/m/n/10 model[]\T1/ptm/m/n/10 , [3340] Underfull \hbox (badness 2057) in paragraph at lines 6194--6205 [][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gl sControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 glsObject[][][][]\T1/ptm/ m/n/10 , [][][]\T1/pcr/m/n/10 glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m /n/10 plot.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.gls[][][][] \T1/ptm/m/n/10 , [3341] Underfull \hbox (badness 10000) in paragraph at lines 6258--6260 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3342] [3343] [3344] [3345] Underfull \hbox (badness 7133) in paragraph at lines 6505--6509 []\T1/ptm/m/n/10 an op-tional data frame con-tain-ing the vari-ables named in [ ]\T1/pcr/m/n/10 model[]\T1/ptm/m/n/10 , [3346] Underfull \hbox (badness 10000) in paragraph at lines 6602--6608 [][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gn lsControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gnlsObject[][][][]\T1/pt m/m/n/10 , [][][]\T1/pcr/m/n/10 gnlsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc r/m/n/10 predict.gnls[][][][]\T1/ptm/m/n/10 , Overfull \hbox (54.78088pt too wide) in paragraph at lines 6629--6629 []\T1/pcr/m/n/10 gnlsControl(maxIter = 50, nlsMaxIter = 7, msMaxIter = 50, min Scale = 0.001, [3347] Underfull \hbox (badness 10000) in paragraph at lines 6667--6669 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3348] [3349] [3350] [3351] Underfull \hbox (badness 10000) in paragraph at lines 6936--6943 [][][]\T1/pcr/m/n/10 formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gappl y[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gsummary[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.nff GroupedData[][][][]\T1/ptm/m/n/10 , [3352] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6954--6954 [] \T1/pcr/m/n/9 y = "Distance from pituitary to pterygomaxilla ry fissure" ),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6959--6959 []\T1/pcr/m/n/9 fm1 <- lme( Orth.new ) # fixed and groups formulae extracted from object[] Underfull \hbox (badness 2875) in paragraph at lines 6981--6983 []\T1/ptm/m/n/10 an ob-ject to be sum-ma-rized - usu-ally a []\T1/pcr/m/n/10 gr oupedData []\T1/ptm/m/n/10 ob-ject or a [3353] [3354] [3355] Underfull \hbox (badness 10000) in paragraph at lines 7196--7202 [][][]\T1/pcr/m/n/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr /m/n/10 Initialize.glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initi alize.lmeStruct[][][][]\T1/ptm/m/n/10 , [3356] [3357] [3358] Underfull \hbox (badness 1997) in paragraph at lines 7341--7349 []\T1/ptm/m/n/10 an op-tional list with con-trol pa-ram-e-ters for the ini-tial -iza-tion and op-ti- Underfull \hbox (badness 2205) in paragraph at lines 7341--7349 \T1/ptm/m/n/10 miza-tion al-go-rithms used in []\T1/pcr/m/n/10 lme[]\T1/ptm/m/n /10 . De-faults to []\T1/pcr/m/n/10 list(niterEM=20, Underfull \hbox (badness 3118) in paragraph at lines 7364--7367 [][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initializ e.reStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.corStruct[][ ][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.varFunc[][][][]\T1/ptm/m/ n/10 , [3359] [3360] [3361] Underfull \hbox (badness 3354) in paragraph at lines 7574--7576 []\T1/ptm/m/n/10 linear model co-ef-fi-cients, only present when []\T1/pcr/m/n/ 10 which []\T1/ptm/m/n/10 is not equal to [3362] [3363] [3364] [3365] [3366] [3367] [3368] [3369] Underfull \hbox (badness 10000) in paragraph at lines 8101--8118 [][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lm e.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lme.groupedData[][][][]\T 1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lmeControl[][][][]\T1/ptm/m/n/10 , [][][]\T 1/pcr/m/n/10 lmeObject[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 8101--8118 [][][]\T1/pcr/m/n/10 lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lmL ist[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/pcr/m/n/10 plot.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 qqnorm.lme[][][][]\T1/ ptm/m/n/10 , [3370] Overfull \hbox (12.78088pt too wide) in paragraph at lines 8144--8144 [] \T1/pcr/m/n/10 subset, method, na.action, control, contrasts, keep.data = TRUE)[] Underfull \hbox (badness 1642) in paragraph at lines 8153--8175 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o f the form [3371] [3372] [3373] [3374] Overfull \hbox (36.78088pt too wide) in paragraph at lines 8418--8418 []\T1/pcr/m/n/10 lmeControl(maxIter = 50, msMaxIter = 50, tolerance = 1e-6, ni terEM = 25, Underfull \hbox (badness 1189) in paragraph at lines 8443--8445 []\T1/ptm/m/n/10 maximum num-ber of eval-u-a-tions of the ob-jec-tive func-tion per-mit-ted for [3375] Underfull \hbox (badness 10000) in paragraph at lines 8466--8468 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is Overfull \hbox (9.78043pt too wide) in paragraph at lines 8509--8509 []\T1/pcr/m/n/9 # request that information on the evolution of the ms iteratio ns be printed[] [3376] [3377] [3378] [3379] [3380] [3381] [3382] [3383] [3384] [3385] [3386] [3387] Underfull \hbox (badness 10000) in paragraph at lines 9266--9273 [][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 ,[][][]\T1/pcr/m/n/10 gls[][][][ ]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 logLik.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 logLik.glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/ n/10 logLik.lmeStruct[][][][]\T1/ptm/m/n/10 , Overfull \hbox (4.38043pt too wide) in paragraph at lines 9277--9277 []\T1/pcr/m/n/9 fm1 <- lme(distance ~ Sex * age, Orthodont, random = ~ age, me thod = "ML") [3388] [3389] [3390] [3391] [3392]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9628 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl icate ignored \relax l.9628 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3393] Underfull \hbox (badness 10000) in paragraph at lines 9648--9651 []\T1/ptm/m/n/10 a ma-trix, or list of ma-tri-ces, with the same di-men-sions a s Underfull \hbox (badness 3108) in paragraph at lines 9692--9695 []\T1/ptm/m/n/10 a ma-trix with the new val-ues to be as-signed to the positive -definite Underfull \hbox (badness 2521) in paragraph at lines 9692--9695 \T1/ptm/m/n/10 ma-trix rep-re-sented by []\T1/pcr/m/n/10 object[]\T1/ptm/m/n/10 . Must have the same di-men-sions as [3394] [3395] [3396] [3397] [3398] [3399] [3400] [3401] [3402] [3403] [3404] Overfull \hbox (18.78088pt too wide) in paragraph at lines 10362--10362 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, weights, [3405] Overfull \hbox (18.78088pt too wide) in paragraph at lines 10366--10366 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, weights,[] Underfull \hbox (badness 1596) in paragraph at lines 10395--10421 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3406] [3407] Overfull \hbox (18.78088pt too wide) in paragraph at lines 10549--10549 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, weights,[] [3408] [3409] [3410] Overfull \hbox (36.78088pt too wide) in paragraph at lines 10700--10700 [] \T1/pcr/m/n/10 opt = c("nlminb", "nlm"), natural = TRUE, sigma = NULL, ...)[] Underfull \hbox (badness 2213) in paragraph at lines 10711--10716 []\T1/ptm/m/n/10 maximum num-ber of it-er-a-tions for [][][]\T1/pcr/m/n/10 nlmi nb[][][] []\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 iter.max[]\T1/ptm/m/n/10 ) or the [ ][][]\T1/pcr/m/n/10 nlm[][][] Underfull \hbox (badness 6961) in paragraph at lines 10733--10737 []\T1/ptm/m/n/10 a log-i-cal value passed as the []\T1/pcr/m/n/10 trace []\T1/p tm/m/n/10 to [][][]\T1/pcr/m/n/10 nlminb[][][](.., control= [3411] Underfull \hbox (badness 10000) in paragraph at lines 10752--10754 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3412] [3413] [3414] [3415] Overfull \hbox (96.18033pt too wide) in paragraph at lines 11048--11048 []\T1/pcr/m/n/9 cfm1 <- confint(fm1) # via profiling each % FIXME: only *one* message instead of one *each*[] Overfull \hbox (90.78033pt too wide) in paragraph at lines 11049--11049 []\T1/pcr/m/n/9 mat.class <- class(matrix(1)) # ("matrix", "array") for R >= 4 .0.0; ("matrix" in older R)[] [3416] [3417] [3418] [3419] [3420] [3421] Overfull \hbox (25.98041pt too wide) in paragraph at lines 11439--11439 []\T1/pcr/m/n/9 example(compareFits) # cF12 <- compareFits(coef(lmList(Orthodo nt)), .. lme(*)) [3422] [3423] [3424] [3425] [3426] [3427] Underfull \hbox (badness 6268) in paragraph at lines 11826--11836 [][][]\T1/pcr/m/n/10 pdBlocked[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdC ompSymm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdDiag[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/pcr/m/n/10 pdFactor[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdIdent[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/pcr/m/n/10 pdMatrix[][][][]\T1/ptm/m/n/10 , [3428] [3429] [3430] [3431] Underfull \hbox (badness 10000) in paragraph at lines 12087--12093 [][][]\T1/pcr/m/n/10 as.matrix.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/ 10 coef.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdBlocked[][][][]\T1 /ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/ pcr/m/n/10 pdConstruct[][][][]\T1/ptm/m/n/10 , [3432] [3433] [3434] [3435] [3436] Underfull \hbox (badness 6876) in paragraph at lines 12409--12411 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 value []\T1/ptm/m/n/10 is an \T1/ptm/m/it/ 10 ini-tial-ized []\T1/pcr/m/n/10 pdMat []\T1/ptm/m/n/10 ob-ject, []\T1/pcr/m/n /10 object []\T1/ptm/m/n/10 will be con-structed from [3437] [3438] Underfull \hbox (badness 2452) in paragraph at lines 12565--12572 [][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdC ompSymm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdDiag[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/pcr/m/n/10 pdIdent[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdNatural[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdSymm[][][][]\T1/ptm/m/ n/10 , [][][]\T1/pcr/m/n/10 reStruct[][][][]\T1/ptm/m/n/10 , [3439] Underfull \hbox (badness 10000) in paragraph at lines 12631--12637 [][][]\T1/pcr/m/n/10 as.matrix.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/ 10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdFactor[][][][]\T1/p tm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/ n/10 pdMatrix.reStruct[][][][]\T1/ptm/m/n/10 , [3440] [3441] [3442] [3443] [3444] [3445] [3446] [3447] [3448] Overfull \hbox (25.98041pt too wide) in paragraph at lines 13220--13220 []\T1/pcr/m/n/9 example(compareFits) # cF12 <- compareFits(coef(lmList(Orthodo nt)), .. lme(*)) [3449] [3450] [3451] [3452] [3453] Overfull \hbox (9.78043pt too wide) in paragraph at lines 13585--13585 []\T1/pcr/m/n/9 plot(fm1, resid(., type = "pool") ~ fitted(.) | Sex, abline = 0, id = 0.05)[] [3454] Underfull \hbox (badness 10000) in paragraph at lines 13612--13615 []\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nffGroupe dData[]\T1/ptm/m/n/10 , rep-re-sent-ing a [3455] Underfull \hbox (badness 1838) in paragraph at lines 13655--13662 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If []\T1/pcr/m/ n/10 TRUE []\T1/ptm/m/n/10 and ei-ther []\T1/pcr/m/n/10 inner Underfull \hbox (badness 3713) in paragraph at lines 13655--13662 []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 innerGroups []\T1/ptm/m/n/10 are non-[]\T1 /pcr/m/n/10 NULL[]\T1/ptm/m/n/10 , a leg-end for the dif-fer-ent []\T1/pcr/m/n/ 10 inner Overfull \hbox (12.78088pt too wide) in paragraph at lines 13712--13712 []\T1/pcr/m/n/10 plot(x, outer, inner, innerGroups, xlab, ylab, strip, aspect, panel,[] [3456] Underfull \hbox (badness 10000) in paragraph at lines 13719--13722 []\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nfnGroupe dData[]\T1/ptm/m/n/10 , rep-re-sent-ing a Underfull \hbox (badness 2469) in paragraph at lines 13719--13722 []\T1/pcr/m/n/10 groupedData []\T1/ptm/m/n/10 ob-ject with a nu-meric pri-mary co-vari-ate and a sin-gle [3457] Underfull \hbox (badness 10000) in paragraph at lines 13827--13830 []\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nmGrouped Data[]\T1/ptm/m/n/10 , rep-re-sent-ing a [3458] [3459] Underfull \hbox (badness 10000) in paragraph at lines 13921--13923 [][][]\T1/pcr/m/n/10 groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 c ollapse.groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.nfnGroupe dData[][][][]\T1/ptm/m/n/10 , [3460] [3461] [3462] [3463] [3464] [3465] [3466] [3467] Overfull \hbox (20.58041pt too wide) in paragraph at lines 14445--14445 []\T1/pcr/m/n/9 newOrth <- data.frame(Sex = c("Male","Male","Female","Female", "Male","Male"),[] [3468] [3469] [3470] [3471] [3472] [3473] [3474] [3475] [3476]pdfTeX warning (e xt4): destination with the same identifier (name{Rfn.random.effects}) has been already used, duplicate ignored \relax l.15098 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.random.effects.1}) has been already us ed, duplicate ignored \relax l.15098 ...Extract Random Effects}{random.effects} [3477] [3478] [3479] [3480] [3481] [3482] [3483] [3484] [3485] [3486] [3487] Overfull \hbox (25.98041pt too wide) in paragraph at lines 15734--15734 []\T1/pcr/m/n/9 plot(Remifentanil, type = "l", lwd = 2) # shows the 65 patient s\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 remi profiles [3488] Underfull \hbox (badness 1009) in paragraph at lines 15786--15795 []\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served - fit-ted) are used; else, if [3489] [3490] Overfull \hbox (66.78088pt too wide) in paragraph at lines 15933--15933 [] \T1/pcr/m/n/10 type = c("response", "pearson", "normalized"), asLi st = FALSE, ...)[] [3491] [3492] [3493] [3494] [3495] Underfull \hbox (badness 10000) in paragraph at lines 16268--16274 [][][]\T1/pcr/m/n/10 groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 l me[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/10 , [ ][][]\T1/pcr/m/n/10 solve.reStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 summary.reStruct[][][][]\T1/ptm/m/n/10 , [3496] Overfull \hbox (18.78088pt too wide) in paragraph at lines 16300--16300 [] \T1/pcr/m/n/10 method = c("REML", "ML"), niterEM = c(40, 200), useG en, ...)[] [3497] [3498] [3499] [3500] [3501] [3502] [3503] Underfull \hbox (badness 1728) in paragraph at lines 16786--16789 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3504] [3505] [3506] [3507] [3508] Underfull \hbox (badness 1803) in paragraph at lines 17120--17129 \T1/pcr/m/n/10 of an Identity" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pdIdent[]\ T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "General Positive-Definite, Underfull \hbox (badness 10000) in paragraph at lines 17120--17129 \T1/pcr/m/n/10 Natural Parametrization" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 p dNatural[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "General Underfull \hbox (badness 7888) in paragraph at lines 17120--17129 \T1/pcr/m/n/10 Positive-Definite" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pdSymm[ ]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 data.class(object) [3509] Underfull \hbox (badness 10000) in paragraph at lines 17191--17192 []\T1/pcr/m/n/10 "Constant plus power of variance Underfull \hbox (badness 10000) in paragraph at lines 17192--17193 []\T1/pcr/m/n/10 "Constant plus proportion of variance [3510] [3511] [3512] [3513] Underfull \hbox (badness 10000) in paragraph at lines 17441--17449 [][][]\T1/pcr/m/n/10 varComb[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varCo nstPower[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varConstProp[][][][]\T1/p tm/m/n/10 , [][][]\T1/pcr/m/n/10 varExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m /n/10 varFixed[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varIdent[][][][]\T1 /ptm/m/n/10 , [3514] [3515] [3516] [3517] Overfull \hbox (4.38043pt too wide) in paragraph at lines 17713--17713 []\T1/pcr/m/n/9 # Generate some synthetic data using the two-component error m odel and use Overfull \hbox (25.98041pt too wide) in paragraph at lines 17715--17715 []\T1/pcr/m/n/9 # overparameterisation in the case of a constant term in the v ariance function[] [3518] [3519] [3520] [3521] [3522] [3523] Underfull \hbox (badness 10000) in paragraph at lines 18153--18163 [][][]\T1/pcr/m/n/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n /10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.co rLin[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 18153--18163 [][][]\T1/pcr/m/n/10 Variogram.corRatio[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m /n/10 Variogram.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogr am.corSpher[][][][]\T1/ptm/m/n/10 , [3524] Underfull \hbox (badness 3579) in paragraph at lines 18185--18190 \T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p tm/m/n/10 , in which case a se-quence [3525] Underfull \hbox (badness 3579) in paragraph at lines 18249--18254 \T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p tm/m/n/10 , in which case a se-quence [3526] Underfull \hbox (badness 3579) in paragraph at lines 18312--18317 \T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p tm/m/n/10 , in which case a se-quence [3527] Underfull \hbox (badness 1577) in paragraph at lines 18373--18375 []\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 "[][]corR atio[][][]"[]\T1/ptm/m/n/10 , rep-re-sent-ing an Ra-tio-nal Underfull \hbox (badness 3579) in paragraph at lines 18375--18380 \T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p tm/m/n/10 , in which case a se-quence [3528] Underfull \hbox (badness 3579) in paragraph at lines 18438--18443 \T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p tm/m/n/10 , in which case a se-quence Underfull \hbox (badness 10000) in paragraph at lines 18471--18480 [][][]\T1/pcr/m/n/10 corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Va riogram[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.default[][][][]\ T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 18471--18480 [][][]\T1/pcr/m/n/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/ n/10 Variogram.corLin[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.co rRatio[][][][]\T1/ptm/m/n/10 , [3529] Underfull \hbox (badness 3579) in paragraph at lines 18510--18515 \T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p tm/m/n/10 , in which case a se-quence [3530] [3531] Underfull \hbox (badness 1009) in paragraph at lines 18656--18665 []\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served - fit-ted) are used; else, if [3532] [3533] Underfull \hbox (badness 1009) in paragraph at lines 18788--18797 []\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served - fit-ted) are used; else, if [3534] [3535] [3536] [3537] [3538] [3539] [3540] [3541] [3542]) (./nnet-pkg.tex Chapter 26. pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom} ) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.multinom.1}) has been already used, du plicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} [3543] Overfull \hbox (12.78088pt too wide) in paragraph at lines 71--71 [] \T1/pcr/m/n/10 contrasts = NULL, Hess = FALSE, summ = 0, censored = FALSE,[] [3544] [3545] [3546] Overfull \hbox (15.18042pt too wide) in paragraph at lines 371--371 []\T1/pcr/m/n/9 ir.nn2 <- nnet(species ~ ., data = ird, subset = samp, size = 2, rang = 0.1,[] [3547] Overfull \hbox (4.38043pt too wide) in paragraph at lines 428--428 []\T1/pcr/m/n/9 targets <- matrix(c(rep(c(1,0,0),50), rep(c(0,1,0),50), rep(c( 0,0,1),50)),[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 431--431 []\T1/pcr/m/n/9 ir1 <- nnet(ir[samp,], targets[samp,], size=2, rang=0.1, decay =5e-4, maxit=200)[] [3548] [3549] Overfull \hbox (15.18042pt too wide) in paragraph at lines 511--511 []\T1/pcr/m/n/9 ir.nn2 <- nnet(species ~ ., data = ird, subset = samp, size = 2, rang = 0.1,[] [3550]) (./rpart-pkg.tex Chapter 27. [3551] [3552] [3553] [3554] Overfull \hbox (36.78088pt too wide) in paragraph at lines 324--324 []\T1/pcr/m/n/10 labels(object, digits = 4, minlength = 1L, pretty, collapse = TRUE, ...)[] [3555] Underfull \hbox (badness 2351) in paragraph at lines 349--353 \T1/ptm/m/n/10 age: []\T1/pcr/m/n/10 pretty = 0 []\T1/ptm/m/n/10 im-plies []\T1 /pcr/m/n/10 minlength = 0L[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pretty = NULL []\ T1/ptm/m/n/10 im-plies [3556] [3557] [3558] Underfull \hbox (badness 1442) in paragraph at lines 592--598 []\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 FALSE[]\T1/ptm/m/n/10 , the leaf nodes wil l be at the hor-i-zon-tal plot co-or-di-nates of [3559] [3560] Overfull \hbox (0.78088pt too wide) in paragraph at lines 738--738 [] \T1/pcr/m/n/10 filename = paste(deparse(substitute(tree)), ".ps", sep = ""),[] Underfull \hbox (badness 10000) in paragraph at lines 771--775 []\T1/ptm/m/n/10 Logical. If []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 (de-fault), adds to the la-bel Underfull \hbox (badness 1142) in paragraph at lines 771--775 \T1/pcr/m/n/10 #events level1/ #events level2/ \T1/ptm/m/n/10 etc. for method [ ]\T1/pcr/m/n/10 class[]\T1/ptm/m/n/10 , \T1/pcr/m/n/10 n [3561] [3562] [3563] Overfull \hbox (25.98041pt too wide) in paragraph at lines 915--915 []\T1/pcr/m/n/9 predict(fit, type = "matrix") # level number, class frequencie s, probabilities[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 934--934 []\T1/pcr/m/n/10 print(x, minlength = 0, spaces = 2, cp, digits = getOption("d igits"),[] [3564] [3565] [3566] [3567] Overfull \hbox (6.78088pt too wide) in paragraph at lines 1180--1180 []\T1/pcr/m/n/10 rpart(formula, data, weights, subset, na.action = na.rpart, m ethod, Overfull \hbox (12.78088pt too wide) in paragraph at lines 1181--1181 [] \T1/pcr/m/n/10 model = FALSE, x = FALSE, y = TRUE, parms, control, cos t, ...)[] Underfull \hbox (badness 2846) in paragraph at lines 1243--1245 []\T1/ptm/m/n/10 a list of op-tions that con-trol de-tails of the []\T1/pcr/m/n /10 rpart []\T1/ptm/m/n/10 al-go-rithm. See [3568] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1287--1287 []\T1/pcr/m/n/9 par(mfrow = c(1,2), xpd = NA) # otherwise on some devices the text is clipped[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 1303--1303 []\T1/pcr/m/n/10 rpart.control(minsplit = 20, minbucket = round(minsplit/3), c p = 0.01, Overfull \hbox (60.78088pt too wide) in paragraph at lines 1304--1304 [] \T1/pcr/m/n/10 maxcompete = 4, maxsurrogate = 5, usesurrogate = 2, xval = 10,[] [3569] [3570] [3571] [3572] [3573] [3574] [3575] Underfull \hbox (badness 1565) in paragraph at lines 1760--1763 []\T1/ptm/m/n/10 the ploidy sta-tus of the tu-mor, from flow cy-tom-e-try. Val- ues are `[]\T1/pcr/m/n/10 diploid[]\T1/ptm/m/n/10 ', [3576] Overfull \hbox (12.78088pt too wide) in paragraph at lines 1854--1854 [] \T1/pcr/m/n/10 pretty = NULL, digits = getOption("digits") - 3, use.n = FALSE,[] [3577] [3578] [3579]) (./spatial-pkg.tex [3580] Chapter 28. [3581] [3582] [3583] [3584] [3585] [3586] Underfull \hbox (badness 10000) in paragraph at lines 423--427 [3587] [3588] [3589] [3590] [3591] [3592] [3593] [3594] [3595] [3596] [3597] [3598] [3599]) (./survival-pkg.tex [3600] Chapter 29. [3601] [3602] Overfull \hbox (31.3804pt too wide) in paragraph at lines 173--173 []\T1/pcr/m/n/9 aareg(formula = Surv(time, status) ~ age + sex + ph.ecog, data = lung, nmin = 1[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 192--192 []\T1/pcr/m/n/9 ## Not run: lines(lfit2[4], col=2) # Nearly the same, until t he last point[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 195--195 []\T1/pcr/m/n/9 # Chronic Granuomatous Disease. See section 8.5 of Therneau a nd Grambsch.[] [3603] [3604] Underfull \hbox (badness 6412) in paragraph at lines 284--286 []\T1/ptm/m/n/10 an op-tional list or vec-tor of group-ing el-e-ments, each as long as [3605] [3606]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.aml}) has been already used, duplicate ignored \relax l.384 ... Myelogenous Leukemia survival data}{aml} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.aml.1}) has been already used, duplica te ignored \relax l.384 ... Myelogenous Leukemia survival data}{aml} [3607] Overfull \hbox (9.78043pt too wide) in paragraph at lines 485--485 []\T1/pcr/m/n/9 fit <- coxph(Surv(futime, fustat) ~ resid.ds *rx + ecog.ps, da ta = ovarian) Overfull \hbox (4.38043pt too wide) in paragraph at lines 487--487 []\T1/pcr/m/n/9 fit2 <- coxph(Surv(futime, fustat) ~ resid.ds +rx + ecog.ps, d ata=ovarian)[] [3608] Overfull \hbox (6.78088pt too wide) in paragraph at lines 525--525 [] \T1/pcr/m/n/10 survreg(Surv(time, status) ~ age + sex + factor(ph.ecog), lung)[] [3609] Underfull \hbox (badness 1178) in paragraph at lines 605--615 []\T1/ptm/m/n/10 If H(t; z) is the pre-dicted cu-mu-la-tive haz-ard for an ob-s er-va-tion with co-vari-ate vec-tor z, [3610] [3611] [3612] Overfull \hbox (20.58041pt too wide) in paragraph at lines 792--792 []\T1/pcr/m/n/9 py <- pseudo(survfit(Surv(time, status) ~1, lung), time=730) # 2 year survival Overfull \hbox (30.78088pt too wide) in paragraph at lines 808--808 []\T1/pcr/m/n/10 brier(fit, times, newdata, ties = TRUE, detail = FALSE, timef ix = TRUE, [3613] Overfull \hbox (48.78088pt too wide) in paragraph at lines 891--891 [] \T1/pcr/m/n/10 method =c("Prentice","SelfPrentice","LinYing","I.Borgan", "II.Borgan"),[] [3614] [3615] [3616] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1034--1034 [] \T1/pcr/m/n/9 subcoh = ~subcohort, id=~seqno, stratum=~instit, cohort.siz e=stratsizes,[] [3617] [3618] Underfull \hbox (badness 1097) in paragraph at lines 1205--1207 []\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi al and negative-binomial data. Overfull \hbox (4.38043pt too wide) in paragraph at lines 1225--1225 []\T1/pcr/m/n/9 ppois(4, 10.24153) #chance of seeing 4 or fewer events wit h large rate[] [3619] [3620] Overfull \hbox (31.3804pt too wide) in paragraph at lines 1340--1340 []\T1/pcr/m/n/9 ## Not run: clogit(case ~ spontaneous + induced + strata(strat um), data=infert) [3621] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1401--1401 []\T1/pcr/m/n/9 marginal.model <- coxph(Surv(time, status) ~ rx, data= rats, c luster=litter, pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) h as been already used, duplicate ignored \relax l.1407 ...erapy for Stage B/C colon cancer}{colon} [3622] [3623] Overfull \hbox (72.78088pt too wide) in paragraph at lines 1507--1507 [] \T1/pcr/m/n/10 influence=0, ranks = FALSE, reverse=FALSE, timefix=TRUE, ke epstrata=10, ...)[] [3624] [3625] [3626] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1733--1733 []\T1/pcr/m/n/9 options(na.action = na.exclude) # predict all 1384 obs, incl uding missing[] [3627] Overfull \hbox (18.78088pt too wide) in paragraph at lines 1827--1827 []\T1/pcr/m/n/10 cox.zph(fit, transform="km", terms=TRUE, singledf=FALSE, glob al=TRUE) [3628] [3629] [3630] [3631] Underfull \hbox (badness 10000) in paragraph at lines 2145--2150 []\T1/ptm/m/n/10 One user mis-take that has re-cently arisen is to slav-ishly f ol-low the ad-vice of Underfull \hbox (badness 7486) in paragraph at lines 2145--2150 \T1/ptm/m/n/10 some cod-ing guides and prepend []\T1/pcr/m/n/10 survival:: []\T 1/ptm/m/n/10 onto ev-er-thing, in-clud-ing the spe- Underfull \hbox (badness 10000) in paragraph at lines 2145--2150 \T1/ptm/m/n/10 cial terms, e.g., []\T1/pcr/m/n/10 survival::coxph(survival:Surv (time, status) ~ age + [3632] [3633] Underfull \hbox (badness 3861) in paragraph at lines 2257--2261 [][][]\T1/pcr/m/n/10 coxph.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 coxphms.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 coxph.control[][][] []\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cluster[][][][]\T1/ptm/m/n/10 , [][][]\ T1/pcr/m/n/10 strata[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Surv[][][][]\ T1/ptm/m/n/10 , [3634] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2312--2312 []\T1/pcr/m/n/10 iter.max = 20, toler.inf = sqrt(eps), outer.max = 10, timefix =TRUE)[] [3635] [3636] [3637] [3638] [3639] [3640] [3641] [3642] [3643] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2942--2942 [] \T1/pcr/m/n/9 [1] "extreme" "logistic" "gaussian" "weibull" " exponential"[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2983--2983 []\T1/pcr/m/n/10 finegray(formula, data, weights, subset, na.action= na.pass, etype, [3644] [3645] [3646] [3647] Overfull \hbox (12.78088pt too wide) in paragraph at lines 3227--3227 []\T1/pcr/m/n/10 frailty.t(x, sparse = (nclass > 5), theta, df, eps = 1e-05, t df = 5,[] [3648] [3649] [3650] [3651] Underfull \hbox (badness 1019) in paragraph at lines 3489--3491 []\T1/ptm/m/n/10 outcome: []\T1/pcr/m/n/10 censor[]\T1/ptm/m/n/10 , []\T1/pcr/m /n/10 thymic lymphoma[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 reticulum cell sarcoma other [3652] [3653] Overfull \hbox (15.18042pt too wide) in paragraph at lines 3634--3634 []\T1/pcr/m/n/9 kfit <- coxph(Surv(time, status)~ age + sex + disease + frailt y(id), kidney) [3654] Overfull \hbox (36.7804pt too wide) in paragraph at lines 3669--3669 [] \T1/pcr/m/n/9 factor(c(0, 1, 2,1,0,2), 0:2, c("censored", "progre ssion", "death")))[] Underfull \hbox (badness 1389) in paragraph at lines 3683--3685 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with Overfull \hbox (12.78088pt too wide) in paragraph at lines 3694--3694 [] \T1/pcr/m/n/10 conf.type = c("log", "log-log", "plain", "logit", "ar csin"),[] [3655] [3656] Overfull \hbox (36.7804pt too wide) in paragraph at lines 3835--3835 [] \T1/pcr/m/n/9 rmap=list(sex=sex, age=age*365.35, year=as.Da te(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 1979/01/01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )))[] [3657] [3658] Overfull \hbox (467.89665pt too wide) in alignment at lines 3976--3976 [] [] [3659] Underfull \vbox (badness 10000) has occurred while \output is active [3660] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4098--4098 []\T1/pcr/m/n/9 # surprise) but their rates of conversion to PCM are essential ly the same.[] [3661] [3662] [3663] [3664] [3665] [3666] [3667] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4549--4549 [] \T1/pcr/m/n/9 entry.dt = as.Date(paste("2011", 1:10, "5" , sep=\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 -\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )))[] [3668] [3669] Overfull \hbox (15.18042pt too wide) in paragraph at lines 4699--4699 []\T1/pcr/m/n/9 tdata <- data.frame(x= lung$age, y = 10*log(lung$age-35) + rno rm(228, 0, 2))[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4704--4704 []\T1/pcr/m/n/9 knots <- unlist(attributes(fit1$model[[2]])[c(\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 Boundary.knots\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 , \TS1/pcr/m/n/9 '\T1 /pcr/m/n/9 knots\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )])[] [3670] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4708--4708 []\T1/pcr/m/n/9 unname(coef(fit1)[-1] - coef(fit1)[1]) # differences: yhat[2: 4] - yhat[1][] [3671] [3672] [3673] Overfull \vbox (11.01616pt too high) has occurred while \output is active [3674] [3675] [3676] Overfull \hbox (0.78088pt too wide) in paragraph at lines 5131--5131 [] \T1/pcr/m/n/10 pch=3, col=1, lty=1, lwd=1, cex=1, log=FALSE, xscale=1, ysca le=1,[] [3677] [3678] [3679] Overfull \hbox (24.78088pt too wide) in paragraph at lines 5369--5369 []\T1/pcr/m/n/10 se.fit=FALSE, na.action=na.pass, terms=names(object$assign), collapse,[] [3680] [3681] Overfull \hbox (9.78043pt too wide) in paragraph at lines 5522--5522 []\T1/pcr/m/n/9 mresid <- (lung$status-1) - predict(fit, type=\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 expected\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ) #Martingale resid[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 5530--5530 [] \T1/pcr/m/n/9 predict(fit, reference="sample") + sum(coef(fit) * fit$means , na.rm=TRUE)[] [3682] [3683] Overfull \hbox (25.98041pt too wide) in paragraph at lines 5616--5616 []\T1/pcr/m/n/9 pct <- 1:98/100 # The 100th percentile of predicted survival is at +infinity[] [3684] Overfull \hbox (6.78088pt too wide) in paragraph at lines 5694--5694 [] \T1/pcr/m/n/10 signif.stars = getOption("show.signif.stars"), expand=FALSE , ...)[] [3685] Underfull \hbox (badness 1852) in paragraph at lines 5766--5768 []\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.survfit"[]\T1/pt m/m/n/10 , which is the re-sult of the [3686] [3687] [3688] [3689] Overfull \hbox (20.58041pt too wide) in paragraph at lines 6020--6020 []\T1/pcr/m/n/9 rhat <- predict(rfit, newdata=expand.grid(ph.ecog=0:3, sex=1:2 ), se.fit=TRUE)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6032--6032 []\T1/pcr/m/n/9 # the estimate for ph.ecog=3 is very unstable (n=1), pseudoval ues smooth it.[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6034--6034 []\T1/pcr/m/n/9 # In all the above we should be using the robust variance, e.g ., svyglm, but[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 6058--6058 []\T1/pcr/m/n/10 pspline(x, df=4, theta, nterm=2.5 * df, degree=3, eps=0.1, me thod, Overfull \hbox (36.78088pt too wide) in paragraph at lines 6059--6059 [] \T1/pcr/m/n/10 Boundary.knots=range(x), intercept=FALSE, penalty=TRUE, co mbine, ...)[] [3690] [3691] [3692] Overfull \hbox (30.78088pt too wide) in paragraph at lines 6222--6222 [] \T1/pcr/m/n/10 py <- pyears(futime ~ rx, rmap=list(age=age, sex=sex, year= entry.dt),[] [3693] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6324--6324 []\T1/pcr/m/n/9 pfit <- pyears(Surv(ptime/365.25, pstat) ~ temp.yr + temp.age + sex, mgus,[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6345--6345 []\T1/pcr/m/n/9 fit1 <- pyears(Surv(stop/365.25, event) ~ cut(age + 48, c(0,50 ,60,70,100)) +[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 6347--6347 []\T1/pcr/m/n/9 fit2 <- pyears(Surv(stop/365.25, event) ~ tcut(age + 48, c(0,5 0,60,70,100)) +[] [3694] [3695] [3696] [3697] Underfull \vbox (badness 3168) has occurred while \output is active [3698] [3699] [3700] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6801--6801 []\T1/pcr/m/n/9 gfit <- survfit(Surv(day1, day2, status) ~ batch, braking, id= locomotive)[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 6803--6803 [] \T1/pcr/m/n/9 xlab="Locomotive Age in Months", ylab="Mean cumulative nu mber replacements")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6806--6806 []\T1/pcr/m/n/9 # natural target, an estimate of the number of replacements b y a given time[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6808--6808 []\T1/pcr/m/n/9 # When two valve seats failed at the same inspection, we need to jitter one[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6810--6810 []\T1/pcr/m/n/9 ties <- which(with(valveSeat, diff(id)==0 & diff(time)==0)) # first of a tie[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6814--6814 []\T1/pcr/m/n/9 vdata$time1 <- ifelse(!duplicated(vdata$id), 0, c(0, temp[-len gth(temp)]))[] Overfull \hbox (42.78088pt too wide) in paragraph at lines 6841--6841 [] \T1/pcr/m/n/10 collapse=FALSE, weighted= (type %in% c("dfbeta", "dfbe tas")), ...)[] [3701] [3702] Overfull \hbox (36.78088pt too wide) in paragraph at lines 6935--6935 [] \T1/pcr/m/n/10 type="pstate", collapse=FALSE, weighted= collapse, data.f rame=FALSE,[] [3703] Overfull \hbox (6.78088pt too wide) in paragraph at lines 7034--7034 []\T1/pcr/m/n/10 residuals(object, type=c("response", "deviance","dfbeta","dfb etas",[] Underfull \hbox (badness 1043) in paragraph at lines 7046--7049 []\T1/pcr/m/n/10 "dfbetas"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "working"[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 "ldcase"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lsresp "[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ldshape"[]\T1/ptm/m/n/10 , and [3704] [3705] [3706] [3707] [3708] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7353--7353 []\T1/pcr/m/n/9 lfit1 <- survreg(Surv(time, status) ~ age + ridge(ph.ecog, the ta=5), lung)[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 7354--7354 []\T1/pcr/m/n/9 lfit2 <- survreg(Surv(time, status) ~ sex + ridge(age, ph.ecog , theta=1), lung)[] [3709] [3710] [3711] Overfull \hbox (72.78088pt too wide) in paragraph at lines 7544--7544 []\T1/pcr/m/n/10 rttright(formula, data, weights, subset, na.action, times, id , timefix = TRUE, [3712] Overfull \hbox (42.18039pt too wide) in paragraph at lines 7627--7627 []\T1/pcr/m/n/9 cdf <- cdf[!duplicated(aml$time[index], fromLast=TRUE)] # rem ove duplicate times[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 7631--7631 []\T1/pcr/m/n/9 wt2 <- rttright(Surv(dtime, death) ~ hormon, rotterdam, times= 365*c(3, 5))[] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solder}) has been already used, duplicate ignored \relax l.7635 ...ata from a soldering experiment}{solder} [3713] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7690--7690 []\T1/pcr/m/n/9 dummy <- expand.grid(Opening= c("S", "M", "L"), Solder=c("Thin ", "Thick"))[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 7692--7692 [] \T1/pcr/m/n/9 dimnames=list(Opening= c("S", "M", "L"), Solder=c( "Thin", "Thick")))[] [3714] Overfull \hbox (24.78088pt too wide) in paragraph at lines 7752--7752 []\T1/pcr/m/n/10 statefig(layout, connect, margin = 0.03, box = TRUE, cex = 1, col = 1, [3715] [3716] [3717] [3718] [3719] Overfull \hbox (42.78088pt too wide) in paragraph at lines 8118--8118 []\T1/pcr/m/n/10 event = TRUE, pyears = TRUE, expected = TRUE, rate = FALSE, r r =expected,[] Overfull \hbox (36.78088pt too wide) in paragraph at lines 8119--8119 []\T1/pcr/m/n/10 ci.r = FALSE, ci.rr = FALSE, totals=FALSE, legend = TRUE, vli ne = FALSE,[] [3720] [3721] [3722] Overfull \hbox (78.78088pt too wide) in paragraph at lines 8277--8277 [] \T1/pcr/m/n/10 extend=FALSE, rmean=getOption(\TS1/pcr/m/n/10 '\T1/pcr/m/n/ 10 survfit.rmean\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 ), data.frame=FALSE, dosum, ... )[] Overfull \hbox (36.78088pt too wide) in paragraph at lines 8280--8280 [] \T1/pcr/m/n/10 extend=FALSE, rmean=getOption(\TS1/pcr/m/n/10 '\T1/pcr/m/n/ 10 survfit.rmean\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 ), data.frame=FALSE, ...)[] [3723] [3724] Overfull \hbox (54.78088pt too wide) in paragraph at lines 8471--8471 [] \T1/pcr/m/n/10 type=c(\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 right\TS1/pcr/m/n/ 10 '\T1/pcr/m/n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 left\TS1/pcr/m/n/10 '\T1/p cr/m/n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 interval\TS1/pcr/m/n/10 '\T1/pcr/m/ n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 counting\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 interval2\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 , \T S1/pcr/m/n/10 '\T1/pcr/m/n/10 mstate\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 ),[] [3725] [3726] [3727] Underfull \hbox (badness 1253) in paragraph at lines 8750--8753 []\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 median[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 quantile []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 plot []\T1/ptm/m/n/10 meth-ods first con-struct a sur-vival curve us-ing [3728] [3729] Overfull \hbox (30.78088pt too wide) in paragraph at lines 8889--8889 []\T1/pcr/m/n/10 survcheck(formula, data, subset, na.action, id, istate, istat e0="(s0)", [3730] [3731] Overfull \hbox (12.78088pt too wide) in paragraph at lines 9021--9021 []\T1/pcr/m/n/10 survcondense(formula, data, subset, weights, na.action= na.pa ss, id, [3732] [3733] [3734] Overfull \hbox (9.78043pt too wide) in paragraph at lines 9221--9221 []\T1/pcr/m/n/9 check <- coxph(Surv(time, status) ~ factor(pat.karno) + strata (inst), lung)[] [3735] Overfull \hbox (36.7804pt too wide) in paragraph at lines 9227--9227 [] \T1/pcr/m/n/9 rmap= list(age=(accept.dt - birth.dt), sex=1 , year=accept.dt),[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 9252--9252 [] \T1/pcr/m/n/10 method=c("ederer", "hakulinen", "conditional", "indiv idual.h",[] Underfull \hbox (badness 1038) in paragraph at lines 9294--9300 []\T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre -dicted sur-vival [3736] Overfull \hbox (48.78088pt too wide) in paragraph at lines 9346--9346 [] \T1/pcr/m/n/10 rmap = list(year=entry.dt, age=(birth.d t-entry.dt)),[] [3737] Overfull \hbox (4.38043pt too wide) in paragraph at lines 9432--9432 []\T1/pcr/m/n/9 summary(fit1, times=1:10*182.5, scale=365) #expected survival by 1/2 years[] [3738] [3739] [3740] Underfull \hbox (badness 10000) in paragraph at lines 9652--9657 [][][]\T1/pcr/m/n/10 survfit.formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/ 10 survfit.coxph[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 survfit.object[][ ][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.survfit[][][][]\T1/ptm/m/n/10 , [3741] Overfull \hbox (12.78088pt too wide) in paragraph at lines 9672--9672 [] \T1/pcr/m/n/10 se.fit=TRUE, conf.int=.95, individual=FALSE, stype=2, ctype,[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 9673--9673 [] \T1/pcr/m/n/10 conf.type=c("log","log-log","plain","none", "logit", "arcsin"),[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 9678--9678 [] \T1/pcr/m/n/10 se.fit=FALSE, conf.int=.95, individual=FALSE, stype=2 , ctype,[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 9679--9679 [] \T1/pcr/m/n/10 conf.type=c("log","log-log","plain","none", "logit", "arcsin"),[] [3742] [3743] [3744] Overfull \hbox (12.78088pt too wide) in paragraph at lines 9901--9901 [] \T1/pcr/m/n/10 stype=1, ctype=1, id, cluster, robust, istate, timefi x=TRUE,[] [3745] Underfull \hbox (badness 4441) in paragraph at lines 10042--10052 []\T1/ptm/m/n/10 by de-fault, the surv-fit rou-tines only re-turn in-for-ma-tio n at the [3746] Underfull \hbox (badness 2653) in paragraph at lines 10054--10059 \T1/pcr/m/n/10 ctype=1[]\T1/ptm/m/n/10 , "fleming-harrington" which is equiv-a- lent to []\T1/pcr/m/n/10 stype=2, [3747] [3748] Overfull \hbox (4.38043pt too wide) in paragraph at lines 10242--10242 []\T1/pcr/m/n/9 # There are no interval censored subjects, only left-censored (status=3),[] [3749] [3750] [3751] [3752] [3753] Overfull \hbox (30.78088pt too wide) in paragraph at lines 10674--10674 []\T1/pcr/m/n/10 survfitcoxph.fit(y, x, wt, x2, risk, newrisk, strata, se.fit, survtype, [3754] Underfull \hbox (badness 1354) in paragraph at lines 10715--10719 []\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th e time range [3755] Overfull \hbox (60.78088pt too wide) in paragraph at lines 10761--10761 []\T1/pcr/m/n/10 survConcordance(formula, data, weights, subset, na.action) # use concordance [3756] [3757] Underfull \hbox (badness 2035) in paragraph at lines 10925--10932 \T1/ptm/m/n/10 it is as-sumed to name an el-e-ment from [][][]\T1/pcr/m/n/10 su rvreg.distributions[][][][]\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 10925--10932 \T1/ptm/m/n/10 These in-clude []\T1/pcr/m/n/10 "weibull"[]\T1/ptm/m/n/10 , []\T 1/pcr/m/n/10 "exponential"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "gaussian"[]\T1/p tm/m/n/10 , Underfull \hbox (badness 1297) in paragraph at lines 10925--10932 []\T1/pcr/m/n/10 "logistic"[]\T1/ptm/m/n/10 ,[]\T1/pcr/m/n/10 "lognormal" []\T1 /ptm/m/n/10 and []\T1/pcr/m/n/10 "loglogistic"[]\T1/ptm/m/n/10 . Oth-er-wise, i t is [3758] Overfull \hbox (20.58041pt too wide) in paragraph at lines 11015--11015 []\T1/pcr/m/n/9 # There are multiple ways to parameterize a Weibull distributi on. The survreg[] [3759] [3760] [3761] Overfull \hbox (31.3804pt too wide) in paragraph at lines 11172--11172 [] \T1/pcr/m/n/9 deviance= function(...) stop(\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 deviance residuals not defined\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )[] [3762] [3763] Overfull \hbox (4.38043pt too wide) in paragraph at lines 11304--11304 [] \T1/pcr/m/n/9 temp/pi, -2 *x*temp, 2*temp^2*(4*x ^2*temp -1))[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 11307--11307 [] \T1/pcr/m/n/9 deviance= function(...) stop(\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 deviance residuals not defined\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )[] [3764] [3765] Overfull \hbox (9.78043pt too wide) in paragraph at lines 11483--11483 []\T1/pcr/m/n/9 pfit2 <- pyears(Surv(years, death) ~ fgrp + agegrp, scale =100 0, data=test)[] [3766] [3767] [3768] [3769] Overfull \hbox (9.78043pt too wide) in paragraph at lines 11712--11712 []\T1/pcr/m/n/9 # The first data set contains data on 312 subjects in a clinic al trial plus[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 11713--11713 []\T1/pcr/m/n/9 # 106 that agreed to be followed off protocol, the second data set has data[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 11719--11719 [] \T1/pcr/m/n/9 protime = tdc(day, protime), alk.phos = tdc(day , alk.phos))[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 11721--11721 []\T1/pcr/m/n/9 fit <- coxph(Surv(tstart, tstop, endpt==2) ~ protime + log(bil i), data=pbc2)[] [3770] [3771] [3772] [3773] [3774] [3775] [3776] Overfull \hbox (12.78088pt too wide) in paragraph at lines 12162--12162 []\T1/pcr/m/n/10 levels, test = c("global", "trend", "pairwise"), predict = "l inear",[] [3777] [3778] [3779]) [3780] No file fullrefman.ind. 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[3] [4] Underfull \hbox (badness 6741) in paragraph at lines 143--149 []\T1/ptm/m/n/10 the small-est pos-i-tive floating-point num-ber []\T1/pcr/m/n/ 10 x []\T1/ptm/m/n/10 such that []\T1/pcr/m/n/10 1 + x != 1[]\T1/ptm/m/n/10 . Underfull \hbox (badness 4805) in paragraph at lines 143--149 \T1/ptm/m/n/10 It equals []\T1/pcr/m/n/10 double.base ^ ulp.digits []\T1/ptm/m/ n/10 if ei-ther []\T1/pcr/m/n/10 double.base []\T1/ptm/m/n/10 is Underfull \hbox (badness 4316) in paragraph at lines 143--149 \T1/ptm/m/n/10 2 or []\T1/pcr/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0; oth -er-wise, it is []\T1/pcr/m/n/10 (double.base ^ Underfull \hbox (badness 4454) in paragraph at lines 149--157 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/pcr/m/n/10 x [ ]\T1/ptm/m/n/10 such that []\T1/pcr/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It Underfull \hbox (badness 1028) in paragraph at lines 149--157 \T1/ptm/m/n/10 equals []\T1/pcr/m/n/10 double.base ^ double.neg.ulp.digits []\T 1/ptm/m/n/10 if []\T1/pcr/m/n/10 double.base Underfull \hbox (badness 2980) in paragraph at lines 149--157 []\T1/ptm/m/n/10 is 2 or []\T1/pcr/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0 ; oth-er-wise, it is []\T1/pcr/m/n/10 (double.base Underfull \hbox (badness 1394) in paragraph at lines 149--157 \T1/pcr/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/p cr/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As [5] Underfull \hbox (badness 1142) in paragraph at lines 219--224 []\T1/ptm/m/n/10 the num-ber of \T1/ptm/m/it/10 bytes \T1/ptm/m/n/10 in the C [ ]\T1/pcr/m/n/10 time_t []\T1/ptm/m/n/10 type: a 64-bit []\T1/pcr/m/n/10 time_t []\T1/ptm/m/n/10 (value Underfull \hbox (badness 1478) in paragraph at lines 219--224 []\T1/pcr/m/n/10 8[]\T1/ptm/m/n/10 ) is much pre-ferred these days. Note that t his is the type used by Underfull \hbox (badness 1484) in paragraph at lines 226--231 []\T1/ptm/m/n/10 introduced in \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.0.0. When [][] []\T1/pcr/m/n/10 capabilities[][][]("long.double") []\T1/ptm/m/n/10 is Underfull \hbox (badness 3009) in paragraph at lines 235--247 []\T1/pcr/m/n/10 *.exponent[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 *.min.exp[]\T1/p tm/m/n/10 , and []\T1/pcr/m/n/10 *.max.exp[]\T1/ptm/m/n/10 , com-puted en-tirel y anal-o-gously to their [6] Underfull \hbox (badness 5652) in paragraph at lines 255--260 []\T1/ptm/m/n/10 Note that it is le-gal for a plat-form to have a `[]\T1/pcr/m/ n/10 long double[]\T1/ptm/m/n/10 ' C type which is Underfull \hbox (badness 6691) in paragraph at lines 255--260 \T1/ptm/m/n/10 iden-ti-cal to the `[]\T1/pcr/m/n/10 double[]\T1/ptm/m/n/10 ' ty pe --- this hap-pens on ARM CPUs. In that case Underfull \hbox (badness 1521) in paragraph at lines 255--260 [][][]\T1/pcr/m/n/10 capabilities[][][]("long.double") []\T1/ptm/m/n/10 will be false but on ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 prior to 4.0.4, [7] Underfull \hbox (badness 10000) in paragraph at lines 375--379 [][][]\T1/pcr/m/n/10 R.version[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 Sys.info[][][] []\T1/ptm/m/n/10 give more de-tails about the OS. In par-tic-u-l ar, [8] [9] [10] Underfull \hbox (badness 1072) in paragraph at lines 572--578 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/pcr/m/n/10 insertions[]\T1/ptm/m/n/10 ', [11] Overfull \hbox (4.38043pt too wide) in paragraph at lines 641--641 []\T1/pcr/m/n/9 agrep("laysy", c("1 lazy", "1", "1 LAZY"), max.distance = 2, v alue = TRUE)[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 642--642 []\T1/pcr/m/n/9 agrep("laysy", c("1 lazy", "1", "1 LAZY"), max.distance = 2, i gnore.case = TRUE)[] [12] [13] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Overfull \hbox (60.78088pt too wide) in paragraph at lines 773--773 [] \T1/pcr/m/n/10 ..., check.attributes = TRUE, check.class = TRUE, g iveErr = FALSE)[] [14] [15] Overfull \hbox (4.38043pt too wide) in paragraph at lines 927--927 []\T1/pcr/m/n/9 all.equal(tan(d45), one, tolerance = 0, scale = 1+(-2:2)/1e9) # "absolute"[] [16] Overfull \hbox (4.38043pt too wide) in paragraph at lines 948--948 []\T1/pcr/m/n/9 mtext(paste("mean(all.equal(x1, x2*(1 + eps_k))) {100 x} Mean rel.diff.=",[] Overfull \hbox (69.18036pt too wide) in paragraph at lines 976--976 []\T1/pcr/m/n/9 all.equal(two^20, 2^20, check.attributes = FALSE)# "target is bar, current is numeric"[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 977--977 []\T1/pcr/m/n/9 all.equal(two^20, 2^20, check.attributes = FALSE, check.class = FALSE) # TRUE[] Underfull \vbox (badness 10000) has occurred while \output is active [17] Overfull \hbox (0.78088pt too wide) in paragraph at lines 1002--1002 []\T1/pcr/m/n/10 all.names(expr, functions = TRUE, max.names = -1L, unique = F ALSE) [18] [19] [20] [21] [22] [23] [24] (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [25] Underfull \hbox (badness 1221) in paragraph at lines 1535--1541 []\T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion, where \T1/phv/m/n/10 R \T1/p tm/m/n/10 uses ``floored'' in-te-ger di-vi-sion, i.e., []\T1/pcr/m/n/10 q <- x %/% y := [26] Underfull \hbox (badness 10000) in paragraph at lines 1623--1631 \T1/ptm/m/n/10 Also avail-able at [][]$\T1/pcr/m/n/10 https : / / docs . oracle . com / cd / E19957-[]01 / 806-[]3568 / ncg _ [27] [28] [29] [30] Underfull \vbox (badness 10000) has occurred while \output is active [31] Overfull \hbox (72.78088pt too wide) in paragraph at lines 1966--1966 [] \T1/pcr/m/n/10 cut.names = FALSE, col.names = names(x), fix.em pty.names = TRUE,[] Underfull \hbox (badness 1303) in paragraph at lines 1998--2001 []\T1/ptm/m/n/10 logical or in-te-ger; in-di-cat-ing if col-umn names with more than 256 (or [32] [33] Overfull \hbox (31.3804pt too wide) in paragraph at lines 2089--2089 []\T1/pcr/m/n/9 names(dL <- as.data.frame(L)) # "NA."[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 2090--2090 []\T1/pcr/m/n/9 names(dL1 <- as.data.frame(L, col.names = names(L))) # "NA."[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 2092--2092 []\T1/pcr/m/n/9 names(dL1.<- as.data.frame(L, check.name s=FALSE)) # "NA"[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 2094--2094 []\T1/pcr/m/n/9 names(dL2 <- as.data.frame(L, col.names = names(L), check.name s=FALSE)) # NA[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 2095--2095 []\T1/pcr/m/n/9 names(dLn <- as.data.frame(L, new.names = TRUE, check.name s=FALSE)) # NA[] [34] [35] [36] Overfull \hbox (112.38031pt too wide) in paragraph at lines 2285--2285 []\T1/pcr/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] Underfull \hbox (badness 10000) in paragraph at lines 2323--2325 []\T1/ptm/m/n/10 If [][][]\T1/pcr/m/n/10 is.object[][][](x) []\T1/ptm/m/n/10 is true and it has a [][][]\T1/pcr/m/n/10 class[][][] []\T1/ptm/m/n/10 for which an [37] [38] [39] [40] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2599--2599 []\T1/pcr/m/n/9 (now <- as.POSIXlt(Sys.time())) # the current datetime, as cla ss "POSIXlt"[] [41] Overfull \hbox (121.828pt too wide) in paragraph at lines 2639--2639 []\T1/pcr/m/n/9 if(file.exists(tab)) { # typically on Windows; on Linux when \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 configure --with-internal-tzcode\TS1/cmtt/m/n/9 `[] [42] [43] Underfull \hbox (badness 1107) in paragraph at lines 2807--2809 []\T1/ptm/m/n/10 There are no re-stric-tions on the name given as []\T1/pcr/m/n /10 x[]\T1/ptm/m/n/10 : it can be a non-syntactic name (see [44] [45] [46] Overfull \hbox (42.78088pt too wide) in paragraph at lines 2974--2974 []\T1/pcr/m/n/10 attach(what, pos = 2L, name = deparse1(substitute(what), back tick=FALSE), [47] [48] [49] [50] [51] [52] Underfull \hbox (badness 10000) in paragraph at lines 3443--3446 []\T1/pcr/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[] [][] ver-sion of []\T1/pcr/m/n/10 balancePOSIXlt(x, [53] [54] [55] [56] Overfull \hbox (31.3804pt too wide) in paragraph at lines 3749--3749 []\T1/pcr/m/n/9 legend("topright", legend = paste("nu=", nus), col = nus + 2, lwd = 1, bty="n")[] [57] Overfull \hbox (9.78043pt too wide) in paragraph at lines 3780--3780 []\T1/pcr/m/n/9 plot(range(x0), c(1e-40, 1), log = "xy", xlab = "x", ylab = "" , type = "n",[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 3781--3781 [] \T1/pcr/m/n/9 main = "Bessel Functions J_nu(x) near 0\n log - log sc ale") ; axis(2, at=1)[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3788--3788 []\T1/pcr/m/n/9 plot(range(x0), 10^c(-100, 80), log = "xy", xlab = "x", ylab = "", type = "n",[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 3789--3789 [] \T1/pcr/m/n/9 main = "Bessel Functions K_nu(x) near 0\n log - log sc ale") ; axis(2, at=1)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 3792--3792 []\T1/pcr/m/n/9 legend("topright", legend = paste("nu=", paste(nus, nus + 0.5, sep = ", ")),[] Underfull \vbox (badness 10000) has occurred while \output is active [58] [59] [60] [61] [62] [63] [64] Underfull \hbox (badness 10000) in paragraph at lines 4239--4241 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [65] [66] [67] [68] [69] [70] [71] Overfull \hbox (9.78043pt too wide) in paragraph at lines 4721--4721 []\T1/pcr/m/n/9 L <- as.list(E <- setNames( , c("if", "for", "while", "repeat" , "function",[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 4722--4722 [] \T1/pcr/m/n/9 "(", "{", "[", "<-", "<<-", "->", "=")))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 4723--4723 []\T1/pcr/m/n/9 for(i in seq_along(L)) L[[i]] <- call(E[[i]]) # instead of lap ply(E, call) ..[] Overfull \hbox (73.22806pt too wide) in paragraph at lines 4724--4724 []\T1/pcr/m/n/9 list_ <- function (...) \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 names<- \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 (list(...), vapply(sys.call()[-1L], as.character , ""))[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 4725--4725 []\T1/pcr/m/n/9 (Tab <- noquote(sapply(list_(is.call, typeof, class, mode), \( F) sapply(L, F))))[] [72] Underfull \hbox (badness 4927) in paragraph at lines 4793--4797 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the name of a C func-tion, or an ob-ject Underfull \hbox (badness 2012) in paragraph at lines 4793--4797 \T1/ptm/m/n/10 of class []\T1/pcr/m/n/10 "[][]NativeSymbolInfo[][][]"[]\T1/ptm/ m/n/10 , []\T1/pcr/m/n/10 "[][]RegisteredNativeSymbol[][][]" []\T1/ptm/m/n/10 o r [73] Overfull \hbox (0.78088pt too wide) in paragraph at lines 4877--4877 [] \T1/pcr/m/n/10 Xchk = any(nas %in% c("X11", "jpeg", "png", "tif f")))[] [74] Underfull \hbox (badness 4595) in paragraph at lines 4951--4954 []\T1/ptm/m/n/10 is ICU avail-able for col-la-tion? See the help on [][]Com-par -i-son[][][] and [75] [76] [77] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5114--5114 []\T1/pcr/m/n/9 cat(paste(letters, 100* 1:26), fill = TRUE, labels = paste0("{ ", 1:10, "}:"))[] Underfull \hbox (badness 1199) in paragraph at lines 5143--5149 []\T1/ptm/m/n/10 (generalized) vec-tors or ma-tri-ces. These can be given as na med ar-gu- Underfull \hbox (badness 2573) in paragraph at lines 5155--5158 []\T1/ptm/m/n/10 (only for data frame method:) log-i-cal in-di-cat-ing if uniqu e and valid [78] [79] [80] Overfull \hbox (9.78043pt too wide) in paragraph at lines 5326--5326 []\T1/pcr/m/n/9 rbind(1:4, c = 2, "a++" = 10, dd, deparse.level = 1) # 3 rowna mes (default)[] [81] [82] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5499--5499 []\T1/pcr/m/n/9 as.character(list(A = "Abc", xy = c("x", "y"))) # "Abc" "c(\" x\", \"y\")"[] [83] Underfull \hbox (badness 2521) in paragraph at lines 5587--5589 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [84] [85] [86] [87] [88] [89] [90] [91] Underfull \hbox (badness 1270) in paragraph at lines 6075--6083 []\T1/ptm/m/n/10 When a generic func-tion []\T1/pcr/m/n/10 fun []\T1/ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute []\T1/pcr/m/n/10 c("first", [92] [93] [94] [95] [96] [97] [98] [99] Underfull \hbox (badness 1796) in paragraph at lines 6652--6660 []\T1/ptm/m/n/10 Collation of char-ac-ter strings is a com-plex topic. For an i n-tro-duc-tion see [][]$\T1/pcr/m/n/10 https : / / [100] [101] [102] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6858--6858 []\T1/pcr/m/n/9 NAs <- vapply(list(NA, NA_integer_, NA_real_, NA_character_, N A_complex_),[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 6868--6868 []\T1/pcr/m/n/9 ## The exact result of this *depends* on the platform, compile r, math-library:[] Overfull \hbox (90.78033pt too wide) in paragraph at lines 6870--6870 []\T1/pcr/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [103] [104] Underfull \hbox (badness 1635) in paragraph at lines 7073--7076 []\T1/ptm/m/n/10 User in-ter-rupts sig-nal a con-di-tion of class []\T1/pcr/m/n /10 interrupt []\T1/ptm/m/n/10 that in-her-its di-rectly from class [105] Underfull \hbox (badness 3009) in paragraph at lines 7077--7080 []\T1/ptm/m/n/10 Restarts are used for es-tab-lish-ing re-cov-ery pro-to-cols. They can be es-tab-lished us-ing Underfull \hbox (badness 1308) in paragraph at lines 7120--7128 []\T1/ptm/m/n/10 One ad-di-tional field that can be spec-i-fied for a restart i s []\T1/pcr/m/n/10 interactive[]\T1/ptm/m/n/10 . This should [106] [107] Overfull \hbox (0.78088pt too wide) in paragraph at lines 7291--7291 []\T1/pcr/m/n/10 zstdfile(description, open = "", encoding = getOption("encodi ng"),[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 7294--7294 []\T1/pcr/m/n/10 unz(description, filename, open = "", encoding = getOption("e ncoding"))[] [108] Underfull \hbox (badness 4505) in paragraph at lines 7346--7349 []\T1/ptm/m/n/10 character string, par-tially matched to []\T1/pcr/m/n/10 c("de fault", "internal", [109] [110] Underfull \hbox (badness 10000) in paragraph at lines 7481--7486 []\T1/pcr/m/n/10 file[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pipe[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 fifo[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 url[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 gzfile[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 bzfile[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 xzfile[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 zstdfile[]\T1/ ptm/m/n/10 , []\T1/pcr/m/n/10 unz[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1092) in paragraph at lines 7481--7486 []\T1/pcr/m/n/10 socketConnection[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 socketAcce pt []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 serverSocket []\T1/ptm/m/n/10 re-turn a con-nec-tion ob-ject [111] [112] [113] Underfull \hbox (badness 10000) in paragraph at lines 7744--7746 []\T1/ptm/m/n/10 It may be pos-si-ble to de-duce the cur-rent na-tive en-cod-in g from [114] Underfull \hbox (badness 3302) in paragraph at lines 7786--7793 []\T1/pcr/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/pcr/m/n/10 descri ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/pcr/m/n/10 "r" []\T1/ptm/m/n /10 only. This [115] [116] Underfull \vbox (badness 10000) has occurred while \output is active [117] Underfull \vbox (badness 10000) has occurred while \output is active [118] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8032--8032 []\T1/pcr/m/n/9 A <- read.table(con <- file("students", encoding = "UCS-2LE")) ; close(con)[] [119] [120] [121] [122] [123] Underfull \hbox (badness 10000) in paragraph at lines 8387--8389 []\T1/ptm/m/n/10 The cur-rent eval-u-a-tion depth (in-clud-ing two calls for th e call to [124] [125] Overfull \hbox (9.78043pt too wide) in paragraph at lines 8546--8546 []\T1/pcr/m/n/9 curlGetHeaders("http://bugs.r-project.org") ## this redirect s to https://[] [126] [127] [128] [129] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8780--8780 []\T1/pcr/m/n/9 tm <- seq(as.POSIXct("2012-06-01 06:00"), by = "6 hours", leng th.out = 24)[] [130] [131] Underfull \hbox (badness 10000) in paragraph at lines 8896--8906 []\T1/pcr/m/n/10 data.frame []\T1/ptm/m/n/10 con-verts each of its ar-gu-ments to a data frame by call-ing Underfull \hbox (badness 1975) in paragraph at lines 8896--8906 [][][]\T1/pcr/m/n/10 as.data.frame[][][](optional = TRUE)[]\T1/ptm/m/n/10 . As that is a generic func-tion, meth-ods can be [132] [133] Overfull \hbox (20.58041pt too wide) in paragraph at lines 9064--9064 [] \T1/pcr/m/n/9 c = seq(as.Date("2004-01-01"), by = "week", l ength.out = 3),[] [134] [135] [136] [137] Underfull \hbox (badness 10000) in paragraph at lines 9402--9414 \T1/pcr/m/n/10 23:59:59", format = "%Y-%m-%d %H:%M:%S", tz = "UTC") []\T1/ptm/m /n/10 may give []\T1/pcr/m/n/10 NA[]\T1/ptm/m/n/10 , and [138] [139] [140] [141] [142] [143] [144] [145] [146] Overfull \hbox (9.78043pt too wide) in paragraph at lines 10052--10052 []\T1/pcr/m/n/9 ### Promises in an environment [for advanced users]: -------- -------------[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 10054--10054 []\T1/pcr/m/n/9 e <- (function(x, y = 1, z) environment())(cos, "y", {cat(" HO !\n"); pi+2})[] [147] Overfull \hbox (60.78088pt too wide) in paragraph at lines 10082--10082 [] \T1/pcr/m/n/10 backtick = mode(expr) %in% c("call", "expression", "( ", "function"),[] Overfull \hbox (60.78088pt too wide) in paragraph at lines 10083--10083 [] \T1/pcr/m/n/10 control = c("keepNA", "keepInteger", "niceNames", "sh owAttributes"),[] [148] [149] Underfull \hbox (badness 5403) in paragraph at lines 10210--10212 []\T1/pcr/m/n/10 ..deparseOpts []\T1/ptm/m/n/10 is the [][][]\T1/pcr/m/n/10 cha racter[][][] []\T1/ptm/m/n/10 vec-tor of pos-si-ble de-pars-ing op-tions used b y Underfull \hbox (badness 6063) in paragraph at lines 10229--10231 []\T1/ptm/m/n/10 Surround un-eval-u-ated ex-pres-sions, but not [][][]\T1/pcr/m /n/10 formula[][][][]\T1/ptm/m/n/10 s, with [150] [151] [152] Underfull \hbox (badness 1603) in paragraph at lines 10459--10462 []\T1/ptm/m/n/10 a nu-meric value. The mod-u-lus (ab-so-lute value) of the de-t er-mi-nant if [153] [154] [155] [156] [157] [158] Overfull \hbox (12.78088pt too wide) in paragraph at lines 10932--10932 [] \T1/pcr/m/n/10 z <- as.POSIXct(c("2016-12-31 23:59:59", "2017-01-01 00:0 0:01"))[] [159] [160] [161] Underfull \hbox (badness 1917) in paragraph at lines 11096--11101 []\T1/pcr/m/n/10 provideDimnames(x) []\T1/ptm/m/n/10 pro-vides []\T1/pcr/m/n/10 dimnames []\T1/ptm/m/n/10 where ``miss-ing'', such that its re-sult has [162] Overfull \hbox (36.7804pt too wide) in paragraph at lines 11151--11151 []\T1/pcr/m/n/9 strd(provideDimnames(N, base= list(letters[-(1:9)], tail(LETTE RS)))) # recycling[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 11152--11152 []\T1/pcr/m/n/9 strd(provideDimnames(A, base= list(c("AA","BB")))) # recycling on both levels[] [163] Underfull \hbox (badness 1168) in paragraph at lines 11254--11259 []\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of []\ T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . Cur-rently this is only used by [164] [165] Overfull \hbox (25.98041pt too wide) in paragraph at lines 11356--11356 []\T1/pcr/m/n/9 ## From R 4.1.0 to 4.1.2, ...names() sometimes did not match n ames(list(...));[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 11358--11358 []\T1/pcr/m/n/9 chk.n2 <- function(...) stopifnot(identical(print(...names()), names(list(...))))[] [166] Underfull \hbox (badness 2828) in paragraph at lines 11477--11482 [][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / IEEE _ 754-[]19 85$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . Underfull \hbox (badness 10000) in paragraph at lines 11477--11482 \T1/pcr/m/n/10 org / wiki / IEEE _ 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr /m/n/10 https : / / en . wikipedia . org / wiki / IEEE _ Underfull \hbox (badness 10000) in paragraph at lines 11477--11482 \T1/pcr/m/n/10 754-[]2019$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/ pcr/m/n/10 https : [167] Overfull \hbox (42.78088pt too wide) in paragraph at lines 11508--11508 [] \T1/pcr/m/n/10 control = c("keepNA", "keepInteger", "niceNames", "showA ttributes"))[] [168] Overfull \hbox (15.18042pt too wide) in paragraph at lines 11582--11582 []\T1/pcr/m/n/9 ## Write an ASCII version of the \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 base\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 function mean() to our temp file, ..[] [169] Overfull \hbox (4.38043pt too wide) in paragraph at lines 11659--11659 []\T1/pcr/m/n/9 drop(1:3 %*% 2:4) # scalar product - w/o drop(.), would retur n 1x1 matrix[] [170] Overfull \hbox (9.78043pt too wide) in paragraph at lines 11740--11740 []\T1/pcr/m/n/9 aq <- transform(airquality, Month = factor(Month, labels = mon th.abb[5:9])) [171] [172] [173] Underfull \hbox (badness 6396) in paragraph at lines 11939--11947 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 10000) in paragraph at lines 11948--11950 []\T1/pcr/m/n/10 duplicated(x, fromLast = TRUE) []\T1/ptm/m/n/10 is equiv-a-len t to but faster than [174] [175] [176] Underfull \hbox (badness 10000) in paragraph at lines 12166--12169 []\T1/ptm/m/n/10 Do not use []\T1/pcr/m/n/10 dyn.unload []\T1/ptm/m/n/10 on a D LL loaded by [][][]\T1/pcr/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 : use [177] [178] [179] [180] [181] [182] Underfull \hbox (badness 2744) in paragraph at lines 12609--12611 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [183] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12632--12632 []\T1/pcr/m/n/9 Encoding(x.) # "unknown" (UTF-8 loc.) | "latin1" (8859-1/CP-12 52 loc.) | ....[] [184] [185] [186] Underfull \hbox (badness 5288) in paragraph at lines 12886--12888 []\T1/ptm/m/n/10 The path to the de-fault browser. Used to set the de-fault val ue of Underfull \hbox (badness 3039) in paragraph at lines 12896--12901 []\T1/ptm/m/n/10 Optional. The path to Ghostscript, used by [][][]\T1/pcr/m/n/1 0 dev2bitmap[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 bitmap[][][] []\T1/pt m/m/n/10 and [187] Underfull \hbox (badness 10000) in paragraph at lines 12953--12956 []\T1/ptm/m/n/10 The path to HTML []\T1/pcr/m/n/10 tidy[]\T1/ptm/m/n/10 . Used by []\T1/pcr/m/n/10 R CMD check []\T1/ptm/m/n/10 if Underfull \hbox (badness 10000) in paragraph at lines 12971--12973 []\T1/ptm/m/n/10 (and more). Op-tional. Set-tings for [188] [189] [190] [191] Underfull \hbox (badness 10000) in paragraph at lines 13221--13223 []\T1/ptm/m/n/10 a frame in the call-ing list. Equiv-a-lent to giv-ing []\T1/pc r/m/n/10 where []\T1/ptm/m/n/10 as Underfull \hbox (badness 5970) in paragraph at lines 13264--13266 []\T1/pcr/m/n/10 get0(): []\T1/ptm/m/n/10 The object---as from [][][]\T1/pcr/m/ n/10 get[][][](x, *)[]\T1/ptm/m/n/10 --- if []\T1/pcr/m/n/10 exists(x, *) []\T1 /ptm/m/n/10 is true, oth-er-wise [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] Overfull \hbox (9.78043pt too wide) in paragraph at lines 14081--14081 []\T1/pcr/m/n/9 ## "avector" := vector that keeps attributes. Could provide a constructor[] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] Underfull \hbox (badness 2253) in paragraph at lines 14817--14819 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see Underfull \hbox (badness 1490) in paragraph at lines 14852--14855 []\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m a-tion is given about the [214] [215] Underfull \hbox (badness 2573) in paragraph at lines 14989--14991 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/pcr /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/pcr/m/n/10 fsep = [216] [217] Underfull \hbox (badness 10000) in paragraph at lines 15150--15152 []\T1/ptm/m/n/10 logical: should file dates be pre-served where pos-si-ble? See [218] [219] Underfull \hbox (badness 10000) in paragraph at lines 15271--15275 [][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/pcr/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15282--15285 [][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . Overfull \hbox (47.58038pt too wide) in paragraph at lines 15303--15303 [] \T1/pcr/m/n/9 # |--> (TRUE,FALSE) : ok for A but not B as it exists already[] [220] Overfull \hbox (30.78088pt too wide) in paragraph at lines 15329--15329 []\T1/pcr/m/n/10 dir.create(path, showWarnings = TRUE, recursive = FALSE, mode = "0777")[] [221] Underfull \hbox (badness 10000) in paragraph at lines 15425--15428 [][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil e.exists[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/pcr/m/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/ m/n/10 unlink[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 basename[][][][]\T1/ ptm/m/n/10 , Overfull \hbox (9.78043pt too wide) in paragraph at lines 15435--15435 []\T1/pcr/m/n/9 f <- list.files(".", all.files = TRUE, full.names = TRUE, recu rsive = TRUE)[] [222] Underfull \hbox (badness 10000) in paragraph at lines 15501--15504 []\T1/pcr/m/n/10 packageNotFoundError []\T1/ptm/m/n/10 cre-ates an er-ror con-d i-tion ob-ject of class Overfull \hbox (20.58041pt too wide) in paragraph at lines 15518--15518 []\T1/pcr/m/n/9 ## will not give an error, maybe a warning about *all* locatio ns it is found:[] [223] Overfull \hbox (0.78088pt too wide) in paragraph at lines 15547--15547 []\T1/pcr/m/n/10 findInterval(x, vec, rightmost.closed = FALSE, all.inside = F ALSE, Overfull \hbox (6.78088pt too wide) in paragraph at lines 15548--15548 [] \T1/pcr/m/n/10 left.open = FALSE, checkSorted = TRUE, checkNA = TRUE)[] [224] Underfull \hbox (badness 3965) in paragraph at lines 15586--15590 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, Overfull \hbox (52.98038pt too wide) in paragraph at lines 15638--15638 []\T1/pcr/m/n/9 stopifnot(identical(it, ## suppressing the checks is faster *B UT* dangerous, unless[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 15639--15639 [] \T1/pcr/m/n/9 ## you *know* that X is sorted and tt contains no NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 15640--15640 [] \T1/pcr/m/n/9 findInterval(tt, X, checkSorted=FALSE, che ckNA=FALSE)))[] [225] [226] Overfull \hbox (0.78088pt too wide) in paragraph at lines 15753--15753 [] \T1/pcr/m/n/10 .C(.NAME, ..., NAOK = FALSE, DUP = TRUE, PACKAGE, ENCO DING) Overfull \hbox (0.78088pt too wide) in paragraph at lines 15754--15754 [] \T1/pcr/m/n/10 .Fortran(.NAME, ..., NAOK = FALSE, DUP = TRUE, PACKAGE, ENCO DING)[] [227] [228] [229] [230] Overfull \hbox (63.78036pt too wide) in paragraph at lines 15996--15996 []\T1/pcr/m/n/9 ## formals returns a pairlist. Arguments with no default have type symbol (aka name).[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 15999--15999 []\T1/pcr/m/n/9 ## formals returns NULL for primitive functions. Use it in co mbination with[] [231] Underfull \hbox (badness 1331) in paragraph at lines 16088--16092 []\T1/ptm/m/n/10 either a log-i-cal spec-i-fy-ing whether el-e-ments of a real or com-plex vec- Underfull \hbox (badness 2012) in paragraph at lines 16088--16092 \T1/ptm/m/n/10 tor should be en-coded in sci-en-tific for-mat, or an in-te-ger penalty (see Underfull \hbox (badness 10000) in paragraph at lines 16095--16095 []\T1/pcr/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 big.interval[]\T1/ ptm/m/n/10 , []\T1/pcr/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sma ll.interval[]\T1/ptm/m/n/10 , [232] Underfull \hbox (badness 6944) in paragraph at lines 16184--16187 [][][]\T1/pcr/m/n/10 formatC[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 paste [][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.character[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/pcr/m/n/10 sprintf[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 p rint[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 prettyNum[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/pcr/m/n/10 toString[][][][]\T1/ptm/m/n/10 , [233] Overfull \hbox (4.38043pt too wide) in paragraph at lines 16214--16214 []\T1/pcr/m/n/9 z <- list(a = letters[1:3], b = (-pi+0i)^((-2:2)/2), c = c(1,1 0,100,1000),[] [234] [235] Underfull \hbox (badness 10000) in paragraph at lines 16352--16354 []\T1/pcr/m/n/10 prettyNum() []\T1/ptm/m/n/10 is used for ``pret-ti-fy-ing'' (p os-si-bly for-mat-ted) num-bers, also in Overfull \hbox (48.78088pt too wide) in paragraph at lines 16372--16372 [] \T1/pcr/m/n/10 decimal.mark = getOption("OutDec"), input.d.mark = decimal.mark,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 16378--16378 []\T1/pcr/m/n/10 .format.zeros(x, zero.print, nx = suppressWarnings(as.numeric (x)),[] [236] Underfull \hbox (badness 2790) in paragraph at lines 16385--16388 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/pcr/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for Underfull \hbox (badness 1024) in paragraph at lines 16416--16423 []\T1/pcr/m/n/10 "f" []\T1/ptm/m/n/10 gives num-bers in the usual []\T1/pcr/m/n /10 xxx.xxx []\T1/ptm/m/n/10 for-mat; []\T1/pcr/m/n/10 "e" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "E" []\T1/ptm/m/n/10 give [237] Underfull \hbox (badness 10000) in paragraph at lines 16492--16494 []\T1/ptm/m/n/10 This works via []\T1/pcr/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/pcr/m/n/10 .format.zeros(*, Underfull \hbox (badness 10000) in paragraph at lines 16514--16519 []\T1/ptm/m/n/10 For num-bers, []\T1/pcr/m/n/10 formatC() []\T1/ptm/m/n/10 call s []\T1/pcr/m/n/10 prettyNum() []\T1/ptm/m/n/10 when needed which it-self calls Underfull \hbox (badness 2426) in paragraph at lines 16520--16522 []\T1/ptm/m/n/10 If you set []\T1/pcr/m/n/10 format []\T1/ptm/m/n/10 it over-ri des the set-ting of []\T1/pcr/m/n/10 mode[]\T1/ptm/m/n/10 , so []\T1/pcr/m/n/10 formatC(123.45, mode = [238] Underfull \hbox (badness 10000) in paragraph at lines 16531--16539 []\T1/pcr/m/n/10 prettyNum []\T1/ptm/m/n/10 is the util-ity func-tion for pret- ti-fy-ing []\T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 x []\T1/ptm/m/n /10 can be com-plex (or [239] Overfull \hbox (4.38043pt too wide) in paragraph at lines 16638--16638 []\T1/pcr/m/n/9 fc <- formatC(1.234 + 10^(0:8), format = "fg", width = 11, big .mark = "\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ")[] Underfull \vbox (badness 10000) has occurred while \output is active [240] Overfull \hbox (42.18039pt too wide) in paragraph at lines 16660--16660 []\T1/pcr/m/n/9 doLC <- FALSE # <= R warns, so change to TRUE manually if you want see the effect[] [241] [242] Overfull \hbox (24.78088pt too wide) in paragraph at lines 16846--16846 []\T1/pcr/m/n/10 Reduce(f, x, init, right = FALSE, accumulate = FALSE, simplif y = TRUE) [243] [244] [245] [246] [247] [248] [249] Overfull \hbox (4.38043pt too wide) in paragraph at lines 17331--17331 []\T1/pcr/m/n/9 ## very low-level: get()ing the "missing argument", e.g., insi de browser()[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 17342--17342 [] \T1/pcr/m/n/9 is.symbol(E$m) # => valid argument to get(), and *also* ge ts \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 missing arg\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 :[] [250] [251] [252] Overfull \hbox (20.58041pt too wide) in paragraph at lines 17524--17524 []\T1/pcr/m/n/9 utils::tail(getLoadedDLLs(), 2) # the last 2 loaded ones, stil l a DLLInfoList[] [253] Underfull \hbox (badness 2418) in paragraph at lines 17633--17637 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/pcr/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [254] Underfull \hbox (badness 6510) in paragraph at lines 17640--17643 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 name []\T1/ptm/m/n/10 con-tains only one s ym-bol name and []\T1/pcr/m/n/10 unlist []\T1/ptm/m/n/10 is []\T1/pcr/m/n/10 TR UE[]\T1/ptm/m/n/10 , then the sin-gle Underfull \hbox (badness 2326) in paragraph at lines 17675--17682 [][][]\T1/pcr/m/n/10 getDLLRegisteredRoutines[][][][]\T1/ptm/m/n/10 , [][][]\T1 /pcr/m/n/10 is.loaded[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .C[][][][]\T 1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .Fortran[][][][]\T1/ptm/m/n/10 , [][][]\T1/ pcr/m/n/10 .External[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .Call[][][][] \T1/ptm/m/n/10 , [255] [256] Overfull \hbox (9.78043pt too wide) in paragraph at lines 17835--17835 []\T1/pcr/m/n/9 ## Not run: ## for translation, those strings should appear in R-pkg.pot as[] [257] Overfull \hbox (20.58041pt too wide) in paragraph at lines 17856--17856 []\T1/pcr/m/n/9 if(is.na(thisLang) || !nzchar(thisLang)) thisLang <- "en" # "f actory" default[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 17859--17859 []\T1/pcr/m/n/9 gettext(enT, domain="R-stats")# "leeres Modell angegeben" (if translation works)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 17889--17889 []\T1/pcr/m/n/9 ## Here, we reset to the *original* setting before the full ex ample started:[] [258] [259] Overfull \hbox (0.78088pt too wide) in paragraph at lines 18027--18027 []\T1/pcr/m/n/10 grep(pattern, x, ignore.case = FALSE, perl = FALSE, value = F ALSE, Overfull \hbox (0.78088pt too wide) in paragraph at lines 18030--18030 []\T1/pcr/m/n/10 grepv(pattern, x, ignore.case = FALSE, perl = FALSE, value = TRUE,[] [260] Underfull \hbox (badness 1867) in paragraph at lines 18058--18065 []\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][] [] (or char-ac-ter string for [261] [262] [263] [264] Overfull \hbox (20.58041pt too wide) in paragraph at lines 18387--18387 [] \T1/pcr/m/n/9 nms <- nms[is.na(match(nms, c("F","T")))] # <-- work around "checking hack"[] Underfull \vbox (badness 10000) has occurred while \output is active [265] Overfull \hbox (36.7804pt too wide) in paragraph at lines 18416--18416 []\T1/pcr/m/n/9 name.rex <- "(?[[:upper:]][[:lower:]]+) (?[[:uppe r:]][[:lower:]]+)"[] Underfull \vbox (badness 10000) has occurred while \output is active [266] Overfull \hbox (0.78088pt too wide) in paragraph at lines 18472--18472 [] \T1/pcr/m/n/10 value = FALSE, fixed = FALSE, all = FALSE, invert = F ALSE)[] [267] [268] [269] [270] Overfull \hbox (9.78043pt too wide) in paragraph at lines 18854--18854 []\T1/pcr/m/n/9 (ii <- grouping(x <- c(1, 1, 3:1, 1:4, 3), y <- c(9, 9:1), z < - c(2, 1:9))) [271] Overfull \hbox (4.38043pt too wide) in paragraph at lines 18919--18919 []\T1/pcr/m/n/9 z <- gzcon(url("https://www.stats.ox.ac.uk/pub/datasets/csb/ch 12.dat.gz"))[] [272] [273] [274] [275] Overfull \hbox (0.78088pt too wide) in paragraph at lines 19130--19130 []\T1/pcr/m/n/10 iconv(x, from = "", to = "", sub = NA, mark = TRUE, toRaw = F ALSE) [276] [277] Underfull \hbox (badness 1360) in paragraph at lines 19293--19297 []\T1/ptm/m/n/10 The most portable name for the ISO 8859-15 en-cod-ing, com-mon ly known as `Latin 9', Underfull \hbox (badness 1210) in paragraph at lines 19293--19297 \T1/ptm/m/n/10 is []\T1/pcr/m/n/10 "iso885915"[]\T1/ptm/m/n/10 : most plat-form s sup-port both []\T1/pcr/m/n/10 "latin-9" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/1 0 "latin9" []\T1/ptm/m/n/10 but GNU [278] [279] [280] Underfull \hbox (badness 1163) in paragraph at lines 19513--19515 []\T1/ptm/m/n/10 The ICU user guide chap-ter on col-la-tion ([][]$\T1/pcr/m/n/1 0 https : / / unicode-[]org . github . io / icu / Overfull \hbox (9.78043pt too wide) in paragraph at lines 19521--19521 []\T1/pcr/m/n/9 ## As we don\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 t know the current s ettings, we can only reset to the default.[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 19551--19551 []\T1/pcr/m/n/10 identical(x, y, num.eq = TRUE, single.NA = TRUE, attrib.as.se t = TRUE, [281] [282] Overfull \hbox (30.78088pt too wide) in paragraph at lines 19645--19645 [] \T1/pcr/m/n/10 num.eq = FALSE, single.NA = FALSE, attrib.as.se t = FALSE,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 19646--19646 [] \T1/pcr/m/n/10 ignore.bytecode = FALSE, ignore.environment = F ALSE,[] [283] Overfull \hbox (25.98041pt too wide) in paragraph at lines 19699--19699 []\T1/pcr/m/n/9 ### For functions ("closure"s): ------------------------------ ----------------[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 19705--19705 []\T1/pcr/m/n/9 identical(f, g) # TRUE, as bytecode is ignored by default[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 19708--19708 []\T1/pcr/m/n/9 ## GLM families contain several functions, some of which share an environment:[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 19714--19714 []\T1/pcr/m/n/9 op <- options(keep.source = TRUE) # and so, these have differi ng "srcref" :[] [284] [285] Overfull \hbox (4.38043pt too wide) in paragraph at lines 19841--19841 []\T1/pcr/m/n/9 ## This is a (not atypical) case where it is better *not* to u se ifelse(),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 19849--19849 []\T1/pcr/m/n/9 ## example of different return modes (and \TS1/pcr/m/n/9 '\T1/ pcr/m/n/9 test\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 alone determining length):[] [286] [287] [288] Underfull \hbox (badness 10000) in paragraph at lines 20054--20056 []\T1/ptm/m/n/10 how some er-rors are han-dled and re-ported, e.g. see [][][]\T 1/pcr/m/n/10 stop[][][] []\T1/ptm/m/n/10 and [289] Underfull \hbox (badness 2057) in paragraph at lines 20157--20183 [][][]\T1/pcr/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.double[][][][]\T1/pt m/m/n/10 , [][][]\T1/pcr/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc r/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.raw[][][][] \T1/ptm/m/n/10 , [290] [291] [292] Underfull \hbox (badness 10000) in paragraph at lines 20355--20363 \T1/ptm/m/n/10 Also avail-able at [][]$\T1/pcr/m/n/10 https : / / docs . oracle . com / cd / E19957-[]01 / 806-[]3568 / ncg _ [293] [294] [295] Underfull \hbox (badness 4699) in paragraph at lines 20555--20558 []\T1/pcr/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "numeric"[]\T1/ptm/m/n/10 , [296] [297] Overfull \hbox (0.78088pt too wide) in paragraph at lines 20687--20687 []\T1/pcr/m/n/10 ISOdate(year, month, day, hour = 12, min = 0, sec = 0, tz = " GMT")[] [298] [299] Underfull \hbox (badness 4739) in paragraph at lines 20824--20826 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [300] Overfull \hbox (36.7804pt too wide) in paragraph at lines 20879--20879 []\T1/pcr/m/n/9 isSymmetric(D3) # FALSE (as row and co lumn names differ)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 20880--20880 []\T1/pcr/m/n/9 isSymmetric(D3, check.attributes=FALSE) # TRUE (as names are not checked)[] [301] Overfull \hbox (48.78088pt too wide) in paragraph at lines 20995--20995 []\T1/pcr/m/n/10 .kappa_tri(z, exact = FALSE, LINPACK = TRUE, norm = NULL, upl o = "U", ...)[] [302] Overfull \hbox (12.78088pt too wide) in paragraph at lines 20997--20997 []\T1/pcr/m/n/10 rcond(x, norm = c("O","I","1"), triangular = FALSE, uplo = "U ", ...)[] [303] Underfull \hbox (badness 2961) in paragraph at lines 21081--21084 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/pcr/m/n/10 https : / / n etlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / [304] Overfull \hbox (20.58041pt too wide) in paragraph at lines 21137--21137 []\T1/pcr/m/n/9 ## Moore-Penrose inverse { ~= MASS::ginv(); differing tol (val ue & meaning)}:[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 21159--21159 []\T1/pcr/m/n/9 try( kappa(m76, exact=TRUE, norm="1") )# error in solve().. m ust be square[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 21161--21161 []\T1/pcr/m/n/9 ## ==> use pseudo-inverse instead of solve() for rectangular { and norm != "2"}:[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 21181--21181 [] \T1/pcr/m/n/9 inv_z = solve(A, tol = 1e-19))) # 5.22057e16 on x86_ 64 Linux with GCC[] [305] [306] [307] [308] [309] [310] Underfull \hbox (badness 1975) in paragraph at lines 21583--21586 []\T1/ptm/m/n/10 The value of the in-ter-nal eval-u-a-tion of a top-level \T1/p hv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sion is al-ways as-signed to [311] [312] [313] [314] [315] [316] [317] Underfull \hbox (badness 1077) in paragraph at lines 21999--22004 []\T1/ptm/m/n/10 In late 2017 a []\T1/pcr/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/pcr/m/n/10 libcurl []\T 1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 22013--22020 [][][]$\T1/pcr/m/n/10 https : / / curl . se / docs / sslcerts . html$[][] \T1/p tm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / curl . se / docs / [318] Underfull \hbox (badness 1112) in paragraph at lines 22086--22095 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/pcr/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , Underfull \hbox (badness 2970) in paragraph at lines 22144--22147 []\T1/pcr/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/pcr/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a Underfull \hbox (badness 2951) in paragraph at lines 22144--22147 \T1/ptm/m/n/10 hid-den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [319] [320] Underfull \hbox (badness 10000) in paragraph at lines 22257--22261 []\T1/ptm/m/n/10 To sup-press mes-sages dur-ing the load-ing of pack-ages use Underfull \hbox (badness 1454) in paragraph at lines 22257--22261 [][][]\T1/pcr/m/n/10 suppressPackageStartupMessages[][][][]\T1/ptm/m/n/10 : thi s will sup-press all mes-sages from \T1/phv/m/n/10 R \T1/ptm/m/n/10 it-self Underfull \hbox (badness 1221) in paragraph at lines 22262--22269 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 library []\T1/ptm/m/n/10 is called with no []\T1/pcr/m/n/10 package []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 help []\T1/ptm/m /n/10 ar-gu-ment, it lists all avail-able pack- [321] [322] Underfull \hbox (badness 10000) in paragraph at lines 22391--22398 [][][]\T1/pcr/m/n/10 attach[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 detach [][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 search[][][][]\T1/ptm/m/n/10 , [] [][]\T1/pcr/m/n/10 objects[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 autoloa d[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 requireNamespace[][][][]\T1/ptm/ m/n/10 , [323] [324] Underfull \hbox (badness 10000) in paragraph at lines 22512--22516 []\T1/ptm/m/n/10 Do not use [][][]\T1/pcr/m/n/10 dyn.unload[][][] []\T1/ptm/m/n /10 on a DLL loaded by []\T1/pcr/m/n/10 library.dynam[]\T1/ptm/m/n/10 : use [325] [326] [327] Overfull \hbox (6.78088pt too wide) in paragraph at lines 22750--22750 [] \T1/pcr/m/n/10 ignore.case = FALSE, include.dirs = FALSE, no.. = FALSE)[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 22754--22754 [] \T1/pcr/m/n/10 ignore.case = FALSE, include.dirs = FALSE, no.. = FALSE)[] [328] Underfull \hbox (badness 3343) in paragraph at lines 22815--22819 [][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil e.access[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 files[][][] []\T1/ptm/ m/n/10 for many more file han-dling func-tions and [329] [330] Overfull \hbox (4.38043pt too wide) in paragraph at lines 22953--22953 [] \T1/pcr/m/n/9 identical(L$b, e$b)) # "$" working for environments as for lists[] [331] Overfull \hbox (20.58041pt too wide) in paragraph at lines 22964--22964 [] \T1/pcr/m/n/9 df = data.frame(x = rnorm(20), y = rbinom(20, 1, prob = 0.2))),[] [332] Overfull \hbox (9.78043pt too wide) in paragraph at lines 23075--23075 []\T1/pcr/m/n/9 ## This however annihilates all objects in .GlobalEnv with the same names ![] Overfull \hbox (74.58035pt too wide) in paragraph at lines 23078--23078 []\T1/pcr/m/n/9 attach("all.rda") # safer and will warn about masked objects w / same name in .GlobalEnv[] [333] Underfull \hbox (badness 6380) in paragraph at lines 23125--23133 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup- [334] Underfull \hbox (badness 2564) in paragraph at lines 23229--23232 []\T1/ptm/m/n/10 Almost all the out-put rou-tines used by \T1/phv/m/n/10 R \T1/ ptm/m/n/10 it-self un-der Win-dows ig-nore the set-ting of [335] Overfull \hbox (4.38043pt too wide) in paragraph at lines 23272--23272 []\T1/pcr/m/n/9 Sys.setlocale("LC_TIME", "de_DE.UTF-8") # Linux, macOS, other Unix-alikes[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 23276--23276 []\T1/pcr/m/n/9 c(m = months(then), wd = weekdays(then)) # in C_TIME locale \T S1/pcr/m/n/9 '\T1/pcr/m/n/9 cT\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 ; typically German [] Overfull \hbox (42.18039pt too wide) in paragraph at lines 23280--23280 []\T1/pcr/m/n/9 c(m = months(then), wd = weekdays(then)) # "standard" (still p latform specific ?)[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 23287--23287 []\T1/pcr/m/n/9 ## Not run: Sys.setlocale("LC_COLLATE", "C") # turn off loca le-specific sorting,[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 23289--23289 []\T1/pcr/m/n/9 Sys.setenv("LANGUAGE" = "es") # set the language for error/war ning messages[] [336] [337] [338] Underfull \hbox (badness 1400) in paragraph at lines 23466--23470 [][][]\T1/pcr/m/n/10 raw[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 logical[] [][] []\T1/ptm/m/n/10 or `number-like' vec-tors (i.e., of types [][][]\T1/pcr/m /n/10 double[][][] []\T1/ptm/m/n/10 (class [339] [340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] Overfull \hbox (52.98038pt too wide) in paragraph at lines 24314--24314 []\T1/pcr/m/n/9 zN <- c(complex(real = NA , imaginary = r ), complex(real = r , imaginary = NA ),[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 24315--24315 [] \T1/pcr/m/n/9 complex(real = r , imaginary = NaN), complex(real = N aN, imaginary = r ))[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 24318--24318 []\T1/pcr/m/n/9 zM ##--> many "NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s" (= 1) and th e four non-NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s (3 different ones, at 7,9,10)[] [351] [352] Overfull \hbox (20.58041pt too wide) in paragraph at lines 24415--24415 []\T1/pcr/m/n/9 match.arg(c("a", ""), c("", NA, "bb", "abc"), several.ok=TRUE ) # |--> "abc"[] Underfull \hbox (badness 1655) in paragraph at lines 24449--24453 []\T1/ptm/m/n/10 `function' on this help page means an in-ter-preted func-tion (also known as a `clo-sure'): [353] [354] [355] [356] Underfull \hbox (badness 1292) in paragraph at lines 24700--24703 []\T1/ptm/m/n/10 For ma-trix \T1/ptm/m/it/10 cross \T1/ptm/m/n/10 prod-ucts, [] [][]\T1/pcr/m/n/10 crossprod[][][]() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 tcro ssprod() []\T1/ptm/m/n/10 are typ-i-cally prefer-able. [357] [358] [359] [360] [361] Overfull \hbox (0.78088pt too wide) in paragraph at lines 25007--25007 []\T1/pcr/m/n/10 memCompress(from, type = c("gzip", "bzip2", "xz", "zstd", "no ne")) [362] [363] [364] [365] Underfull \hbox (badness 1014) in paragraph at lines 25328--25336 \T1/ptm/m/n/10 al-low more (up to 3Gb). See [][]$\T1/pcr/m/n/10 https : / / lea rn . microsoft . com / en-[]gb / windows / Underfull \hbox (badness 10000) in paragraph at lines 25328--25336 \T1/pcr/m/n/10 desktop / Memory / physical-[]address-[]extension$[][] \T1/ptm/m /n/10 and [][]$\T1/pcr/m/n/10 https : / / learn . [366] [367] Overfull \hbox (0.78088pt too wide) in paragraph at lines 25402--25402 [] \T1/pcr/m/n/10 by.x = by, by.y = by, all = FALSE, all.x = all, all.y = all,[] [368] [369] [370] [371] [372] [373] [374] [375] Underfull \hbox (badness 1448) in paragraph at lines 25952--25960 []\T1/pcr/m/n/10 anyNA(recursive = FALSE) []\T1/ptm/m/n/10 works the same way a s []\T1/pcr/m/n/10 is.na[]\T1/ptm/m/n/10 ; []\T1/pcr/m/n/10 anyNA(recursive = [376] Underfull \hbox (badness 3849) in paragraph at lines 26067--26072 []\T1/pcr/m/n/10 as.name []\T1/ptm/m/n/10 first co-erces its ar-gu-ment in-ter- nally to a char-ac-ter vec-tor (so meth-ods for [377] Underfull \hbox (badness 2165) in paragraph at lines 26144--26150 []\T1/ptm/m/n/10 For an [][][]\T1/pcr/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, Underfull \hbox (badness 1199) in paragraph at lines 26144--26150 \T1/ptm/m/n/10 i.e., []\T1/pcr/m/n/10 names(as.list(env, all.names = TRUE)) []\ T1/ptm/m/n/10 which are also given by [][][]\T1/pcr/m/n/10 ls[][][](env, Underfull \hbox (badness 3148) in paragraph at lines 26144--26150 \T1/pcr/m/n/10 all.names = TRUE, sorted = FALSE)[]\T1/ptm/m/n/10 . If the en-vi -ron-ment is used as a hash ta-ble, [378] [379] [380] Underfull \hbox (badness 2237) in paragraph at lines 26307--26309 []\T1/ptm/m/n/10 character string: par-tial match-ing to one of []\T1/pcr/m/n/1 0 c("bytes", "chars", [381] [382] [383] Underfull \hbox (badness 6188) in paragraph at lines 26534--26537 []\T1/ptm/m/n/10 optional [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/pcr/m/n/10 print()[]\T1/ptm/m/n/10 , used by [384] [385] [386] Underfull \hbox (badness 1521) in paragraph at lines 26724--26738 \T1/ptm/m/n/10 tion []\T1/pcr/m/n/10 GetFinalPathNameByHandle []\T1/ptm/m/n/10 and in case of an er-ror (such as in-suf-fi-cient per- [387] [388] [389] [390] Underfull \hbox (badness 2197) in paragraph at lines 27040--27044 []\T1/ptm/m/n/10 Loading a names-pace should where pos-si-ble be silent, with s tartup mes-sages given by Underfull \hbox (badness 4048) in paragraph at lines 27040--27044 []\T1/pcr/m/n/10 .onAttach[]\T1/ptm/m/n/10 . These mes-sages (and any es-sen-ti al ones from []\T1/pcr/m/n/10 .onLoad[]\T1/ptm/m/n/10 ) should use [391] Underfull \hbox (badness 2846) in paragraph at lines 27054--27058 []\T1/ptm/m/n/10 Uses of []\T1/pcr/m/n/10 library []\T1/ptm/m/n/10 with ar-gu-m ent []\T1/pcr/m/n/10 help []\T1/ptm/m/n/10 to dis-play ba-sic in-for-ma-tion ab out the pack- Underfull \hbox (badness 1990) in paragraph at lines 27054--27058 \T1/ptm/m/n/10 age should use []\T1/pcr/m/n/10 format []\T1/ptm/m/n/10 on the c om-puted pack-age in-for-ma-tion ob-ject and pass this to Overfull \hbox (12.78088pt too wide) in paragraph at lines 27096--27096 []\T1/pcr/m/n/10 attachNamespace(ns, pos = 2L, depends = NULL, exclude, includ e.only) Overfull \hbox (0.78088pt too wide) in paragraph at lines 27100--27100 [] \T1/pcr/m/n/10 keep.parse.data = getOption("keep.parse.data.pk gs"))[] [392] Underfull \hbox (badness 10000) in paragraph at lines 27149--27155 []\T1/pcr/m/n/10 loadNamespace []\T1/ptm/m/n/10 does not at-tach the name space it loads to the search path. Underfull \hbox (badness 1168) in paragraph at lines 27149--27155 []\T1/pcr/m/n/10 attachNamespace []\T1/ptm/m/n/10 can be used to at-tach a fram e con-tain-ing the ex-ported val-ues of a Underfull \hbox (badness 10000) in paragraph at lines 27162--27164 []\T1/pcr/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/pcr/m/n/10 pkg %in% [393] Overfull \hbox (9.78043pt too wide) in paragraph at lines 27229--27229 [] \T1/pcr/m/n/9 ## The string "foo" and the symbol \TS1/pcr/m/n/9 '\T1/pcr/m/ n/9 foo\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 can be used interchangeably here:[] [394] [395] [396] Underfull \hbox (badness 8189) in paragraph at lines 27428--27434 []\T1/ptm/m/n/10 The de-fault method for []\T1/pcr/m/n/10 is.numeric []\T1/ptm/ m/n/10 re-turns []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode[][][] [397] [398] [399] Underfull \hbox (badness 2591) in paragraph at lines 27653--27661 \T1/ptm/m/n/10 ject as ob-tained by [][][]\T1/pcr/m/n/10 R.version[][][][]\T1/p tm/m/n/10 . For []\T1/pcr/m/n/10 as.numeric_version []\T1/ptm/m/n/10 and [400] [401] [402] [403] [404] Underfull \hbox (badness 1603) in paragraph at lines 27939--27941 []\T1/ptm/m/n/10 date ob-jects or char-ac-ter vec-tors. (Char-ac-ter vec-tors a re con-verted by [405] Underfull \hbox (badness 1210) in paragraph at lines 28073--28082 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini- [406] [407] [408] Underfull \hbox (badness 3271) in paragraph at lines 28294--28297 []\T1/ptm/m/n/10 default PDF viewer. The de-fault is set from the en-vi-ron-men t vari-able [409] [410] [411] Underfull \hbox (badness 3138) in paragraph at lines 28605--28611 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/pcr/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 28605--28611 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/pcr/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 2088) in paragraph at lines 28605--28611 \T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 1389) in paragraph at lines 28644--28646 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [412] Underfull \hbox (badness 10000) in paragraph at lines 28675--28681 []\T1/ptm/m/n/10 logical: should per-directory pack-age lock-ing be used by Underfull \hbox (badness 3826) in paragraph at lines 28690--28695 []\T1/ptm/m/n/10 Used by [][][]\T1/pcr/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly Underfull \hbox (badness 1009) in paragraph at lines 28708--28711 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/pcr/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/pcr/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 28724--28727 []\T1/ptm/m/n/10 The de-fault type of pack-ages to be down-loaded and in-stalle d -- see [413] [414] Underfull \vbox (badness 10000) has occurred while \output is active [415] [416] [417] Overfull \hbox (4.38043pt too wide) in paragraph at lines 29110--29110 []\T1/pcr/m/n/9 system.time(o <- sort.list(xx, method = "radix")) # 0.007 sec, 300X faster[] Underfull \vbox (badness 10000) has occurred while \output is active [418] Underfull \hbox (badness 10000) in paragraph at lines 29123--29127 []\T1/ptm/m/n/10 where el-e-ment []\T1/pcr/m/n/10 A[c(arrayindex.x, arrayindex. y)] = FUN(X[arrayindex.x], [419] [420] Underfull \hbox (badness 1210) in paragraph at lines 29270--29273 []\T1/pcr/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/pcr/m/n/10 parse(tex t=s, [421] [422] Overfull \hbox (25.98041pt too wide) in paragraph at lines 29465--29465 []\T1/pcr/m/n/9 tryCatch(parse(text = txt, srcfile = sf), error = function(e) "Syntax error.")[] [423] Underfull \hbox (badness 1478) in paragraph at lines 29495--29500 \T1/ptm/m/n/10 zero-length [][][]\T1/pcr/m/n/10 character[][][](0)[]\T1/ptm/m/n /10 . Note that when []\T1/pcr/m/n/10 collapse []\T1/ptm/m/n/10 is a string, [424] Underfull \hbox (badness 7133) in paragraph at lines 29554--29560 [][][]\T1/pcr/m/n/10 toString[][][] []\T1/ptm/m/n/10 typ-i-cally calls []\T1/pc r/m/n/10 paste(*, collapse=", ")[]\T1/ptm/m/n/10 . String ma-nip-u-la-tion with Overfull \hbox (42.18039pt too wide) in paragraph at lines 29576--29576 []\T1/pcr/m/n/9 ## Notice that the recycling rules make every input as long as the longest input.[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 29588--29588 []\T1/pcr/m/n/9 paste("1st", "2nd", "3rd", collapse = ", ") # probably not wha t you wanted[] Overfull \hbox (17.87582pt too wide) in paragraph at lines 29601--29601 []\T1/pcr/m/n/9 ## zero length arguments recycled as \TS1/cmtt/m/n/9 `\T1/pcr/ m/n/9 ""\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 -- NB: \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 { }\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 <==> character(0) here[] [425] Overfull \hbox (15.18042pt too wide) in paragraph at lines 29604--29604 []\T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 recycle0 = TRUE\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 allows standard vectorized behaviour, i.e., zero-length[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 29605--29605 []\T1/pcr/m/n/9 ## recycling resulting in zero-length result character(0):[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 29608--29608 []\T1/pcr/m/n/9 paste("The value is", val[valid], "-- not so good!") # -> ".. value is -- not .."[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 29609--29609 []\T1/pcr/m/n/9 paste("The value is", val[valid], "-- good: empty!", recycle0= TRUE) # -> character(0)[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 29612--29612 []\T1/pcr/m/n/9 paste("foo", {}, "bar", collapse = "|") # |-- > "foo bar"[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 29614--29614 []\T1/pcr/m/n/9 ## If all arguments are empty (and collapse a string), "" r esults always[] [426] [427] [428] Overfull \hbox (25.98041pt too wide) in paragraph at lines 29802--29802 []\T1/pcr/m/n/9 mtcars |> subset(cyl == 4) |> nrow() # same as nrow(subset(mt cars, cyl == 4))[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 29820--29820 []\T1/pcr/m/n/9 stop() |> (function(...) {})() # stop() is not used on RHS so is not evaluated[] [429] Underfull \hbox (badness 1360) in paragraph at lines 29875--29879 []\T1/ptm/m/n/10 All other []\T1/pcr/m/n/10 type[]\T1/ptm/m/n/10 s give a warn- ing or an er-ror; us-ing, e.g., []\T1/pcr/m/n/10 type = [430] [431] [432] [433] Underfull \hbox (badness 2277) in paragraph at lines 30189--30195 \T1/ptm/m/n/10 i.e., strictly in-clude the bounds of []\T1/pcr/m/n/10 x[]\T1/pt m/m/n/10 . New from \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0, al-low-ing [434] Overfull \hbox (0.78088pt too wide) in paragraph at lines 30224--30224 [] \T1/pcr/m/n/10 (min.n = 1, shrink.sml = 0.25, high.u.bias = 0.8, u5.bias = 1.7,[] [435] Underfull \hbox (badness 1701) in paragraph at lines 30319--30323 []\T1/ptm/m/n/10 This func-tion is al-most never used: []\TS1/cmtt/m/n/10 `\T1/ pcr/m/n/10 name\TS1/cmtt/m/n/10 ` []\T1/ptm/m/n/10 or, more care-fully, [][][]\ T1/pcr/m/n/10 get[][][](name, envir = Overfull \hbox (96.18033pt too wide) in paragraph at lines 30335--30335 []\T1/pcr/m/n/9 try(structure(mysqrt, comment = "primitive function")) # depre cation warning; soon an error[] [436] Underfull \hbox (badness 1796) in paragraph at lines 30389--30392 []\T1/ptm/m/n/10 character string (or []\T1/pcr/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/pcr/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [437] [438] [439] [440] Underfull \hbox (badness 10000) in paragraph at lines 30600--30603 []\T1/ptm/m/n/10 Option []\T1/pcr/m/n/10 width []\T1/ptm/m/n/10 con-trols the p rint-ing of vec-tors, ma-tri-ces and ar-rays, and op-tion [441] Overfull \hbox (47.58038pt too wide) in paragraph at lines 30671--30671 []\T1/pcr/m/n/9 (x <- 2^seq(-8, 30, by=1/4)) # auto-prints; by default all in "exponential" format[] [442] [443] [444] [445] [446] [447] [448] Underfull \hbox (badness 2961) in paragraph at lines 31156--31159 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/pcr/m/n/10 https : / / n etlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / [449] [450] Overfull \hbox (25.98041pt too wide) in paragraph at lines 31305--31305 [] \T1/pcr/m/n/9 c1 = rep(c(1,0,0), 2), c2 = rep(c(0,1,0), 2), c3 = rep(c(0,0,1),2))[] [451] [452] [453] [454] Overfull \hbox (15.18042pt too wide) in paragraph at lines 31598--31598 []\T1/pcr/m/n/9 (nn <- "\u0126\u0119\u1114\u022d\u2001\u03e2\u0954\u0f3f\u13d3 \u147b\u203c")[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 31609--31609 []\T1/pcr/m/n/9 n2 <- "\U0126\U0119\U1114\U022d\U2001\U03e2\U0954\U0f3f\U13d3\ U147b\U203c"[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 31615--31615 []\T1/pcr/m/n/9 ## https://cran.r-project.org/doc/manuals/r-release/R-lang.htm l#Literal-constants[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 31621--31621 []\T1/pcr/m/n/9 ## nul characters (for terminating strings in C) are not allow ed (parse errors)[] Underfull \vbox (badness 10000) has occurred while \output is active [455] [456] Underfull \hbox (badness 7415) in paragraph at lines 31718--31724 []\T1/ptm/m/n/10 Do \T1/ptm/m/it/10 not \T1/ptm/m/n/10 use []\T1/pcr/m/n/10 R.v ersion$os []\T1/ptm/m/n/10 to test the plat-form the code is run-ning on: use Overfull \hbox (42.18039pt too wide) in paragraph at lines 31742--31742 []\T1/pcr/m/n/9 mtext(R.version.string, side = 1, line = 4, adj = 1) # a usefu l bottom-right note[] [457] Overfull \hbox (6.78088pt too wide) in paragraph at lines 31788--31788 []\T1/pcr/m/n/10 set.seed(seed, kind = NULL, normal.kind = NULL, sample.kind = NULL)[] [458] [459] Underfull \hbox (badness 3713) in paragraph at lines 31931--31942 []\T1/pcr/m/n/10 normal.kind []\T1/ptm/m/n/10 can be []\T1/pcr/m/n/10 "Kinderma n-Ramage"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Buggy Kinderman-Ramage" []\T1/ptm /m/n/10 (not [460] Underfull \hbox (badness 2932) in paragraph at lines 32083--32090 \T1/ptm/m/n/10 Now see [][]$\T1/pcr/m/n/10 https : / / www . math . sci . hiros hima-[]u . ac . jp / ~m-[]mat / MT / VERSIONS / [461] [462] Underfull \hbox (badness 1533) in paragraph at lines 32201--32204 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [463] [464] [465] Overfull \hbox (42.78088pt too wide) in paragraph at lines 32354--32354 [] \T1/pcr/m/n/10 ties.method = c("average", "first", "last", "random", "m ax", "min"))[] Underfull \hbox (badness 1038) in paragraph at lines 32372--32383 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/pcr/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [466] [467] Overfull \hbox (15.18042pt too wide) in paragraph at lines 32520--32520 []\T1/pcr/m/n/9 rapply(X, function(x) x, how = "replace") -> X.; stopifnot(ide ntical(X, X.))[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 32522--32522 []\T1/pcr/m/n/9 rapply(X, deparse, control = "all") # passing extras. argument of deparse()[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 32523--32523 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character", deflt = NA_integer_, h ow = "list")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 32524--32524 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character", deflt = NA_integer_, h ow = "unlist")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 32525--32525 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character", h ow = "unlist")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 32532--32532 []\T1/pcr/m/n/9 rapply(E, nchar, classes = "character", deflt = NA_integer_, h ow = "unlist")[] [468] [469] [470] [471] [472] Overfull \hbox (25.98041pt too wide) in paragraph at lines 32842--32842 []\T1/pcr/m/n/9 ## Bit representation [ sign | exponent | mantissa ] of doubl e prec numbers :[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 32844--32844 []\T1/pcr/m/n/9 bitC <- function(x) noquote(vapply(as.double(x), function(x) { # split one double[] Overfull \hbox (74.58035pt too wide) in paragraph at lines 32854--32854 []\T1/pcr/m/n/9 d2bI <- function(x) vapply(as.double(x), function(x) intToBits (numToInts(x)), raw(64L))[] Overfull \hbox (74.58035pt too wide) in paragraph at lines 32855--32855 []\T1/pcr/m/n/9 d2b <- function(x) vapply(as.double(x), function(x) numToBits(x) , raw(64L))[] Underfull \vbox (badness 10000) has occurred while \output is active [473] Underfull \hbox (badness 6300) in paragraph at lines 32924--32926 []\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr it-ing R Ex-ten-sions' man-ual: [474] Underfull \hbox (badness 4048) in paragraph at lines 32950--32955 []\T1/ptm/m/n/10 Either an ob-ject whose mode will give the mode of the vec-tor to Underfull \hbox (badness 4582) in paragraph at lines 32950--32955 \T1/ptm/m/n/10 be read, or a char-ac-ter vec-tor of length one de-scrib-ing the mode: Underfull \hbox (badness 1824) in paragraph at lines 32950--32955 \T1/ptm/m/n/10 one of []\T1/pcr/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/pcr/m/ n/10 "double"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "integer"[]\T1/ptm/m/n/10 , [] \T1/pcr/m/n/10 "int"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/ 10 , [475] [476] [477] [478] [479] [480] [481] [482] Underfull \hbox (badness 2080) in paragraph at lines 33491--33501 []\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 infoRDS[]\T1/ptm/m/n/10 , an \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 list with el-e-ments []\T1/pcr/m/n/10 version []\T1/ptm/m/n /10 (ver-sion num-ber, cur-rently 2 or 3), Overfull \hbox (4.38043pt too wide) in paragraph at lines 33528--33528 []\T1/pcr/m/n/9 ## or examine the object via a connection, which will be opene d as needed.[] [483] [484] [485] [486] [487] [488] [489] Underfull \hbox (badness 7558) in paragraph at lines 34053--34057 []\T1/pcr/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1968) in paragraph at lines 34063--34065 []\T1/ptm/m/n/10 This help page is based on the TRE doc-u-men-ta-tion and the P OSIX stan-dard, and the [490] Underfull \hbox (badness 10000) in paragraph at lines 34074--34076 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/pcr/m/n/10 https : / / pubs . opengroup . org / onlinepubs / Underfull \hbox (badness 1975) in paragraph at lines 34077--34081 []\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/pc r/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/pcr/m /n/10 https : / / www . [491] [492] [493] [494] [495] Overfull \hbox (4.38043pt too wide) in paragraph at lines 34449--34449 []\T1/pcr/m/n/9 rep(1:4, each = 2, times = 3) # length 24, 3 complete replications[] [496] Underfull \hbox (badness 10000) in paragraph at lines 34520--34524 [][][]\T1/pcr/m/n/10 TRUE[][][] [][]FALSE[][][] [][]NULL[][][] [][]Inf[][][] [] []NaN[][][] [][]NA[][][] [][]NA_integer_[][][] [][]NA_real_[][][] [][]NA_comple x_[][][] [497] [498] [499] Underfull \hbox (badness 2302) in paragraph at lines 34753--34756 []\T1/pcr/m/n/10 signif []\T1/ptm/m/n/10 rounds the val-ues in its first ar-gu- ment to the spec-i-fied num-ber of \T1/ptm/m/it/10 sig-nif-i-cant Underfull \hbox (badness 1824) in paragraph at lines 34753--34756 \T1/ptm/m/n/10 dig-its. Hence, for []\T1/pcr/m/n/10 numeric x[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 signif(x, dig) []\T1/ptm/m/n/10 is the same as []\T1/pcr/m/n/ 10 round(x, dig - [500] [501] Overfull \hbox (12.78088pt too wide) in paragraph at lines 34883--34883 [] \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y ears"))[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 34886--34886 [] \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y ears"),[] [502] Overfull \hbox (12.78088pt too wide) in paragraph at lines 34893--34893 [] \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y ears"),[] [503] [504] [505] [506] [507] [508] Overfull \hbox (66.78088pt too wide) in paragraph at lines 35341--35341 [] \T1/pcr/m/n/10 useHash = (n > 1e+07 && !replace && is.null(prob) && size <= n/2))[] [509] [510] [511] [512] [513] [514] [515] Overfull \hbox (12.78088pt too wide) in paragraph at lines 35782--35782 [] \T1/pcr/m/n/10 fileEncoding = "", encoding = "unknown", text, skipNul = FALSE)[] [516] Underfull \hbox (badness 1158) in paragraph at lines 35886--35891 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [517] [518] Overfull \hbox (15.18042pt too wide) in paragraph at lines 36072--36072 []\T1/pcr/m/n/9 cat("TITLE extra line", "2 3 5 7", "11 13 17", file = "ex.data ", sep = "\n") [519] [520] [521] [522] Underfull \hbox (badness 4752) in paragraph at lines 36332--36335 []\T1/ptm/m/n/10 The fourth form gen-er-ates the in-te-ger se-quence []\T1/pcr/ m/n/10 1, 2, ..., length(along.with)[]\T1/ptm/m/n/10 . Underfull \hbox (badness 5563) in paragraph at lines 36336--36342 []\T1/ptm/m/n/10 The fifth form gen-er-ates the se-quence []\T1/pcr/m/n/10 1, 2 , ..., length(from) []\T1/ptm/m/n/10 (as if ar-gu-ment [523] Underfull \hbox (badness 1845) in paragraph at lines 36445--36448 []\T1/ptm/m/n/10 A vec-tor of class []\T1/pcr/m/n/10 "Date"[]\T1/ptm/m/n/10 . T ype []\T1/pcr/m/n/10 "[][]integer[][][]" []\T1/ptm/m/n/10 is of-ten pre-served on pur-pose, sav-ing [524] Overfull \hbox (31.3804pt too wide) in paragraph at lines 36466--36466 []\T1/pcr/m/n/9 ## find all 7th of the month _strictly_ inside two dates, the last being a 7th.[] [525] [526] [527] [528] [529] [530] [531] Underfull \hbox (badness 6094) in paragraph at lines 36963--36967 []\T1/pcr/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in- te-ger con-nec-tion de-scrip-tors for use Underfull \hbox (badness 6559) in paragraph at lines 36963--36967 \T1/ptm/m/n/10 with []\T1/pcr/m/n/10 getConnection[]\T1/ptm/m/n/10 , cor-re-spo nd-ing to the row names of the ta-ble re-turned by [532] [533] Underfull \hbox (badness 3826) in paragraph at lines 37054--37065 []\T1/ptm/m/n/10 In Win-dows, com-mand line in-ter-pre-ta-tion is done by the a p-pli-ca-tion as well as the Underfull \hbox (badness 3492) in paragraph at lines 37054--37065 \T1/ptm/m/n/10 shell. It may de-pend on the com-piler used: Mi-crosoft's rules for the C run-time Underfull \hbox (badness 10000) in paragraph at lines 37054--37065 \T1/ptm/m/n/10 are given at [][]$\T1/pcr/m/n/10 https : / / learn . microsoft . com / en-[]us / cpp / c-[]language / Underfull \hbox (badness 1635) in paragraph at lines 37054--37065 \T1/pcr/m/n/10 parsing-[]c-[]command-[]line-[]arguments ? view = msvc-[]160$[][ ]\T1/ptm/m/n/10 . It may de-pend on the [534] [535] [536] [537] [538] [539] [540] [541] Overfull \hbox (66.78088pt too wide) in paragraph at lines 37606--37606 [] \T1/pcr/m/n/10 method = c("auto", "shell", "quick", "radix"), index .return = FALSE)[] [542] [543] [544] [545] Overfull \hbox (9.78043pt too wide) in paragraph at lines 37897--37897 []\T1/pcr/m/n/9 sort_by.data.frame(mtcars, ~ list(am, -mpg)) |> subset(select = c(am, mpg))[] [546] Overfull \hbox (6.78088pt too wide) in paragraph at lines 37935--37935 [] \T1/pcr/m/n/10 print. = TRUE, echo = TRUE, max.deparse.length = Inf,[] Overfull \hbox (42.78088pt too wide) in paragraph at lines 37937--37937 [] \T1/pcr/m/n/10 deparseCtrl = c("keepInteger", "showAttributes" , "keepNA"),[] [547] Underfull \hbox (badness 4954) in paragraph at lines 37981--37987 [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 vec-tor, passed as []\T1/ pcr/m/n/10 control []\T1/ptm/m/n/10 to [][][]\T1/pcr/m/n/10 deparse[][][]()[]\T 1/ptm/m/n/10 , see also Underfull \hbox (badness 5050) in paragraph at lines 37981--37987 [][][]\T1/pcr/m/n/10 .deparseOpts[][][][]\T1/ptm/m/n/10 . In \T1/phv/m/n/10 R \ T1/ptm/m/n/10 ver-sion <= 3.3.x, this was hard-coded to [548] Overfull \hbox (20.58041pt too wide) in paragraph at lines 38089--38089 []\T1/pcr/m/n/9 ## (all should look "as if on top level", e.g. non-assignments should print:)[] [549] [550] [551] [552] [553] Overfull \hbox (4.38043pt too wide) in paragraph at lines 38452--38452 []\T1/pcr/m/n/9 ### Calculate \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 z-scores\TS1/pcr/m /n/9 ' \T1/pcr/m/n/9 by group (standardize to mean zero, variance one)[] [554] Overfull \hbox (4.38043pt too wide) in paragraph at lines 38467--38467 []\T1/pcr/m/n/9 ## Notice that assignment form is not used since a variable is being added[] [555] [556] Underfull \hbox (badness 10000) in paragraph at lines 38693--38695 [][][]$\T1/pcr/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / [557] [558] [559] [560] Overfull \hbox (12.78088pt too wide) in paragraph at lines 38919--38919 []\T1/pcr/m/n/10 srcfile(filename, encoding = getOption("encoding"), Enc = "un known") Overfull \hbox (12.78088pt too wide) in paragraph at lines 38920--38920 []\T1/pcr/m/n/10 srcfilecopy(filename, lines, timestamp = Sys.time(), isFile = FALSE)[] [561] [562] Underfull \hbox (badness 2828) in paragraph at lines 39119--39127 []\T1/ptm/m/n/10 Stack over-flow er-rors can be caught and han-dled by ex-it-in g han-dlers es-tab-lished with [563] [564] Overfull \hbox (63.78036pt too wide) in paragraph at lines 39250--39250 []\T1/pcr/m/n/9 startsWith(search(), "package:") # typically at least two FALS E, nowadays often three [565] [566] Underfull \hbox (badness 6110) in paragraph at lines 39346--39356 []\T1/ptm/m/n/10 A func-tion []\T1/pcr/m/n/10 .First []\T1/ptm/m/n/10 (and [][] []\T1/pcr/m/n/10 .Last[][][][]\T1/ptm/m/n/10 ) can be de-fined in ap-pro-pri-at e `\T1/pcr/m/n/10 .Rprofile\T1/ptm/m/n/10 ' or Underfull \hbox (badness 2635) in paragraph at lines 39346--39356 \T1/ptm/m/n/10 `\T1/pcr/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' files or have been saved in `\T1/pcr/m/n/10 .RData\T1/ptm/m/n/10 '. If you want a dif-fer-ent Underfull \hbox (badness 1237) in paragraph at lines 39346--39356 \T1/ptm/m/n/10 set of pack-ages than the de-fault ones when you start, in-sert a call to [][][]\T1/pcr/m/n/10 options[][][] []\T1/ptm/m/n/10 in the Underfull \hbox (badness 1231) in paragraph at lines 39346--39356 \T1/pcr/m/n/10 = character()) []\T1/ptm/m/n/10 will at-tach no ex-tra pack-ages on startup (only the \T1/ptm/b/n/10 base \T1/ptm/m/n/10 pack-age) (or Underfull \hbox (badness 1112) in paragraph at lines 39346--39356 \T1/ptm/m/n/10 set []\T1/pcr/m/n/10 R_DEFAULT_PACKAGES=NULL []\T1/ptm/m/n/10 as an en-vi-ron-ment vari-able be-fore run-ning \T1/phv/m/n/10 R\T1/ptm/m/n/10 ). Us-ing Underfull \hbox (badness 10000) in paragraph at lines 39402--39408 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/pcr/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 39402--39408 \T1/ptm/m/n/10 and `\T1/pcr/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1496) in paragraph at lines 39402--39408 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/pcr/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/pcr/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be [567] Underfull \hbox (badness 1460) in paragraph at lines 39417--39424 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/pcr/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 39417--39424 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 39417--39424 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Overfull \hbox (4.38043pt too wide) in paragraph at lines 39477--39477 []\T1/pcr/m/n/9 # Variable expansion in double quotes, string literals with ba ckslashes in[] [568] [569] Underfull \hbox (badness 5985) in paragraph at lines 39564--39567 []\T1/ptm/m/n/10 The de-fault han-dler stores the er-ror mes-sage in a buffer; it can be re-trieved by Underfull \hbox (badness 1460) in paragraph at lines 39564--39567 []\T1/pcr/m/n/10 geterrmessage()[]\T1/ptm/m/n/10 . It also stores a trace of th e call stack that can be re-trieved by [570] Underfull \hbox (badness 1484) in paragraph at lines 39652--39656 []\T1/ptm/m/n/10 alternative to []\T1/pcr/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/pcr/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [571] Overfull \hbox (60.78088pt too wide) in paragraph at lines 39712--39712 [] \T1/pcr/m/n/10 assert <- function(exprs) eval.parent(substitute(stopifnot(e xprs = exprs))) Overfull \hbox (9.78043pt too wide) in paragraph at lines 39738--39738 []\T1/pcr/m/n/9 stopifnot(all.equal(pi, 3.141593), 2 < 2, (1:10 < 12), "a" < "b") |> try()[] [572] Overfull \hbox (25.98041pt too wide) in paragraph at lines 39754--39754 []\T1/pcr/m/n/9 stopifnot(all.equal(rep(list(pi),4), list(3.1, 3.14, 3.141, 3. 1415))) |> try()[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 39762--39762 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 {Yes, learn how to use do.c all(substitute, ...) in a powerful manner !!}[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 39764--39764 []\T1/pcr/m/n/9 bdy <- do.call(substitute, list(bdy, list(stopifnot = quote(warnifnot))))[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 39765--39765 []\T1/pcr/m/n/9 bdy[[N-1]] <- do.call(substitute, list(bdy[[N-1]], list(stop = quote(warning))))[] [573] Underfull \hbox (badness 1436) in paragraph at lines 39829--39833 []\T1/ptm/m/n/10 integer de-ter-min-ing the []\T1/pcr/m/n/10 format()[]\T1/ptm/ m/n/10 ing of sec-onds when needed. Note [574] [575] [576] [577] [578] Overfull \hbox (8.42813pt too wide) in paragraph at lines 40235--40235 []\T1/pcr/m/n/9 ## time with fractional seconds (setting \TS1/cmtt/m/n/9 `\T1/ pcr/m/n/9 tz = ..\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 for reproducible output)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 40237--40237 []\T1/pcr/m/n/9 z3 # prints without fractional seconds by default, digits.sec = NULL ("= 0")[] [579] Overfull \hbox (9.78043pt too wide) in paragraph at lines 40270--40270 []\T1/pcr/m/n/9 format(s1 <- seq.Date(as.Date(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 19 78-01-01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), by = \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 day \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 , len = 7), "%a")[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 40271--40271 []\T1/pcr/m/n/9 format(s2 <- seq.Date(as.Date(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 20 00-01-01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), by = \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 mon th\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 , len = 12), "%b")[] [580] Overfull \hbox (0.78088pt too wide) in paragraph at lines 40383--40383 [] \T1/pcr/m/n/10 add the string to the left of the match to the ou tput.[] [581] [582] [583] [584] Overfull \hbox (6.78088pt too wide) in paragraph at lines 40661--40661 [] \T1/pcr/m/n/10 exdent = 0, prefix = "", simplify = TRUE, initial = p refix)[] [585] Overfull \hbox (4.38043pt too wide) in paragraph at lines 40705--40705 []\T1/pcr/m/n/9 x <- paste(readLines(file.path(R.home("doc"), "THANKS")), coll apse = "\n")[] [586] [587] [588] [589] [590] [591] [592] Overfull \hbox (52.98038pt too wide) in paragraph at lines 41155--41155 []\T1/pcr/m/n/9 ## In fact, you can pass vectors into several arguments, and e verything gets added.[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 41158--41158 []\T1/pcr/m/n/9 ## If there are missing values, the sum is unknown, i.e., also missing, ....[] [593] Overfull \hbox (36.78088pt too wide) in paragraph at lines 41198--41198 []\T1/pcr/m/n/10 format(x, digits = max(3L, getOption("digits") - 3L), zdigits = 4L, ...)[] Overfull \hbox (36.78088pt too wide) in paragraph at lines 41200--41200 [] \T1/pcr/m/n/10 print(x, digits = max(3L, getOption("digits") - 3L), zdigits = 4L, ...)[] [594] Overfull \hbox (4.38043pt too wide) in paragraph at lines 41270--41270 []\T1/pcr/m/n/9 summary(attenu, digits = 4) #-> summary.data.frame(...), defau lt precision [595] [596] [597] [598] [599] Overfull \hbox (31.3804pt too wide) in paragraph at lines 41590--41590 [] \T1/pcr/m/n/9 cat(ch,":", switch(EXPR = ch, a =, A = 1, b = 2:3, "Otherw ise: last"),"\n")[] [600] [601] [602] Overfull \hbox (20.58041pt too wide) in paragraph at lines 41800--41800 []\T1/pcr/m/n/9 if(.Platform$OS.type == "unix") ## on Unix-alikes such Linux, macOS, FreeBSD:[] Underfull \hbox (badness 2293) in paragraph at lines 41830--41836 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de- Underfull \hbox (badness 1237) in paragraph at lines 41830--41836 \T1/ptm/m/n/10 tails of wild-cards ex-pan-sion, see your sys-tem's doc-u-men-ta -tion on the []\T1/pcr/m/n/10 glob []\T1/ptm/m/n/10 sys-tem call. [603] Underfull \hbox (badness 4792) in paragraph at lines 41848--41853 []\T1/ptm/m/n/10 If a file-name starts with []\T1/pcr/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple Underfull \hbox (badness 1107) in paragraph at lines 41848--41853 []\T1/pcr/m/n/10 Sys.glob("*.RData") []\T1/ptm/m/n/10 may or may not match `\T1 /pcr/m/n/10 .RData\T1/ptm/m/n/10 ' but will not usu-ally match [604] [605] [606] [607] Underfull \hbox (badness 10000) in paragraph at lines 42140--42144 []\T1/pcr/m/n/10 sys.status() []\T1/ptm/m/n/10 re-turns a list with com-po-nent s []\T1/pcr/m/n/10 sys.calls[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sys.parents []\ T1/ptm/m/n/10 and Underfull \hbox (badness 1584) in paragraph at lines 42155--42158 []\T1/pcr/m/n/10 sys.call []\T1/ptm/m/n/10 re-turns a call, []\T1/pcr/m/n/10 sy s.function []\T1/ptm/m/n/10 a func-tion def-i-ni-tion, and []\T1/pcr/m/n/10 sys .frame []\T1/ptm/m/n/10 and [608] [609] Overfull \hbox (25.98041pt too wide) in paragraph at lines 42293--42293 []\T1/pcr/m/n/9 is.symlink <- function(paths) isTRUE(nzchar(Sys.readlink(paths ), keepNA=TRUE))[] [610] Overfull \hbox (19.22812pt too wide) in paragraph at lines 42373--42373 []\T1/pcr/m/n/9 print(Sys.setenv(R_TEST = "testit", "A+C" = 123)) # \TS1/cmtt /m/n/9 `\T1/pcr/m/n/9 A+C\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 could also be used [611] [612] [613] Underfull \hbox (badness 1082) in paragraph at lines 42518--42521 []\T1/ptm/m/n/10 logical. If []\T1/pcr/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see Underfull \hbox (badness 10000) in paragraph at lines 42545--42547 [][][]\T1/pcr/m/n/10 source[][][][]\T1/ptm/m/n/10 , and [][][]\T1/pcr/m/n/10 lo adNamespace[][][] []\T1/ptm/m/n/10 which is called from [][][]\T1/pcr/m/n/10 li brary[][][](.) []\T1/ptm/m/n/10 and uses [614] [615] [616] Underfull \hbox (badness 1038) in paragraph at lines 42712--42715 []\T1/ptm/m/n/10 a log-i-cal (not []\T1/pcr/m/n/10 NA[]\T1/ptm/m/n/10 ) in-di-c at-ing whether mes-sages writ-ten to `\T1/pcr/m/n/10 stdout\T1/ptm/m/n/10 ' or [617] [618] [619] [620] [621] [622] Underfull \hbox (badness 1442) in paragraph at lines 43096--43100 \T1/ptm/m/n/10 con-sider it to be piped or redi-rected: []\T1/pcr/m/n/10 stdout = TRUE []\T1/ptm/m/n/10 uses a pipe whereas []\T1/pcr/m/n/10 stdout = [623] [624] [625] Underfull \hbox (badness 4096) in paragraph at lines 43354--43357 []\T1/ptm/m/n/10 Use [][][]\T1/pcr/m/n/10 ftable[][][] []\T1/ptm/m/n/10 for pri nt-ing (and more) of mul-ti-di-men-sional ta-bles. [][][]\T1/pcr/m/n/10 margin. table[][][][]\T1/ptm/m/n/10 , [626] [627] Underfull \hbox (badness 7888) in paragraph at lines 43469--43473 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/pcr/m/n/10 bin []\T1/ptm/m/n/10 can have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/pcr/ m/n/10 length(bin) > [628] [629] [630] [631] Overfull \hbox (63.78036pt too wide) in paragraph at lines 43731--43731 [] \T1/pcr/m/n/9 matrix(c(1L, 2L, NA, 3L), 2, dimnames = list(c("1" , "2"), c("A", "B")))),[] Overfull \hbox (30.0281pt too wide) in paragraph at lines 43733--43733 [] \T1/pcr/m/n/9 array(list(\TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 2\TS1/cm tt/m/n/9 ` \T1/pcr/m/n/9 = structure(c(2, 5.75, 9.5, 13.25, 17), names = nq),[] Overfull \hbox (55.67578pt too wide) in paragraph at lines 43735--43735 [] \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 4\TS1/cmtt/m/n/9 ` \T1/pcr/m /n/9 = NULL, \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 5\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 = NULL), dim=4, dimnames=list(as.character(2:5)))))[] Underfull \hbox (badness 10000) in paragraph at lines 43748--43750 []\T1/pcr/m/n/10 removeTaskCallback []\T1/ptm/m/n/10 un-registers a func-tion t hat was reg-is-tered ear-lier via [632] [633] [634] Underfull \hbox (badness 3872) in paragraph at lines 43947--43950 []\T1/ptm/m/n/10 Duncan Tem-ple Lang (2001) \T1/ptm/m/it/10 Top-level Task Call -backs in R\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / developer . [635] [636] [637] [638] [639] [640] [641] Underfull \hbox (badness 1655) in paragraph at lines 44436--44443 \T1/ptm/m/n/10 may also be known as `[]\T1/pcr/m/n/10 GB[]\T1/ptm/m/n/10 ', `[] \T1/pcr/m/n/10 GB-Eire[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 Europe/Belfast[]\T1 /ptm/m/n/10 ', `[]\T1/pcr/m/n/10 Europe/Guernsey[]\T1/ptm/m/n/10 ', Underfull \hbox (badness 2253) in paragraph at lines 44444--44449 []\T1/pcr/m/n/10 OlsonNames []\T1/ptm/m/n/10 re-turns a char-ac-ter vec-tor, se e the ex-am-ples for typ-i-cal cases. It may Underfull \hbox (badness 1655) in paragraph at lines 44444--44449 \T1/ptm/m/n/10 have an at-tribute []\T1/pcr/m/n/10 "Version"[]\T1/ptm/m/n/10 , some-thing like `[]\T1/pcr/m/n/10 "2023a"[]\T1/ptm/m/n/10 '. (It does on sys-te ms us-ing [642] Underfull \hbox (badness 4467) in paragraph at lines 44498--44507 []\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 OlsonNames []\T1/ptm/m/n/10 re- turns the time-zone names known to the cur-rently se- Underfull \hbox (badness 3954) in paragraph at lines 44498--44507 \T1/ptm/m/n/10 lected Ol-son/IANA database. The system-specific lo-ca-tion in t he file sys-tem varies, [643] Underfull \hbox (badness 1337) in paragraph at lines 44595--44603 \T1/ptm/m/n/10 a file `\T1/pcr/m/n/10 localtime\T1/ptm/m/n/10 ', usu-ally un-de r `\T1/pcr/m/n/10 /etc\T1/ptm/m/n/10 ' (but pos-si-bly un-der `\T1/pcr/m/n/10 / usr/local/etc\T1/ptm/m/n/10 ' or Underfull \hbox (badness 10000) in paragraph at lines 44604--44607 []\T1/ptm/m/n/10 `Because the time zone iden-ti-fier is ex-tracted from the sym -link tar-get name of [644] Underfull \hbox (badness 3460) in paragraph at lines 44663--44666 [][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / data . iana . org / Underfull \hbox (badness 4429) in paragraph at lines 44667--44669 [][][]$\T1/pcr/m/n/10 https : / / data . iana . org / time-[]zones / theory . h tml$[][] \T1/ptm/m/n/10 for the `rules' of the Ol- Overfull \hbox (31.3804pt too wide) in paragraph at lines 44676--44676 []\T1/pcr/m/n/9 ## typically some acronyms/aliases such as "UTC", "NZ", "MET", "Eire", ..., but[] [645] [646] [647] [648] [649] Overfull \hbox (15.18042pt too wide) in paragraph at lines 45017--45017 []\T1/pcr/m/n/9 trace(pt, tracer = quote(cat(sprintf("tracing pt(*, ncp = %.15 g)\n", ncp))),[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 45019--45019 []\T1/pcr/m/n/9 power.t.test(20, 1, power=0.8, sd=NULL) ##--> showing the ncp root finding:[] [650] [651] Overfull \hbox (84.78088pt too wide) in paragraph at lines 45116--45116 [] \T1/pcr/m/n/10 getOption("deparse .max.lines", -1L)))[] Overfull \hbox (84.78088pt too wide) in paragraph at lines 45118--45118 [] \T1/pcr/m/n/10 getOption("deparse .max.lines", -1L)))[] [652] [653] [654] Underfull \hbox (badness 6542) in paragraph at lines 45392--45394 []\T1/pcr/m/n/10 cospi(x)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sinpi(x)[]\T1/ptm/ m/n/10 , and []\T1/pcr/m/n/10 tanpi(x)[]\T1/ptm/m/n/10 , com-pute []\T1/pcr/m/n /10 cos(pi*x)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sin(pi*x)[]\T1/ptm/m/n/10 , an d [655] [656] Overfull \hbox (30.78088pt too wide) in paragraph at lines 45511--45511 []\T1/pcr/m/n/10 trimws(x, which = c("both", "left", "right"), whitespace = "[ \t\r\n]") [657] Underfull \hbox (badness 1708) in paragraph at lines 45579--45587 []\T1/pcr/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 3713) in paragraph at lines 45579--45587 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/pcr/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [658] Underfull \hbox (badness 4859) in paragraph at lines 45619--45624 [][][]\T1/pcr/m/n/10 options[][][] []\T1/ptm/m/n/10 for set-ting er-ror han-dle rs and sup-press-ing the print-ing of er-ror mes-sages; [659] Underfull \hbox (badness 3895) in paragraph at lines 45681--45694 []\T1/ptm/m/n/10 A char-ac-ter string. The pos-si-ble val-ues are listed in the struc-ture []\T1/pcr/m/n/10 TypeTable []\T1/ptm/m/n/10 in Underfull \hbox (badness 1303) in paragraph at lines 45681--45694 \T1/ptm/m/n/10 `\T1/pcr/m/n/10 src/main/util.c\T1/ptm/m/n/10 '. Cur-rent val-ue s are the vec-tor types []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/ m/n/10 "integer"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 2452) in paragraph at lines 45681--45694 []\T1/pcr/m/n/10 "promise"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "object"[]\T1/ptm /m/n/10 , []\T1/pcr/m/n/10 "language"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "char" []\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "..."[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "a ny"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "expression"[]\T1/ptm/m/n/10 , [660] [661] [662] [663] [664] Overfull \hbox (9.78043pt too wide) in paragraph at lines 46034--46034 []\T1/pcr/m/n/9 ll <- list(as.name("sinc"), quote( a + b ), 1:10, letters, exp ression(1+x))[] [665] [666] [667] Underfull \hbox (badness 1137) in paragraph at lines 46173--46180 []\T1/ptm/m/n/10 When a func-tion call-ing []\T1/pcr/m/n/10 UseMethod("fun") [] \T1/ptm/m/n/10 is ap-plied to an ob-ject with class vec-tor [668] [669] [670] [671] [672] Overfull \hbox (4.38043pt too wide) in paragraph at lines 46552--46552 []\T1/pcr/m/n/9 (xx <- intToUtf8(x, , TRUE)) # will only display in some local es and fonts[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 46561--46561 []\T1/pcr/m/n/9 system(paste("od -x", foo)) # 2-byte units, correct on little- endian platforms[] [673] Underfull \hbox (badness 1721) in paragraph at lines 46623--46640 [][][]\T1/pcr/m/n/10 file.rename[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 f ile.symlink[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 dir.create[][][][]\ T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 dir.exists[][][][]\T1/ptm/m/n/10 , [][][]\ T1/pcr/m/n/10 normalizePath[][][][]\T1/ptm/m/n/10 , [674] Overfull \hbox (36.7804pt too wide) in paragraph at lines 46725--46725 []\T1/pcr/m/n/9 try( substr(x, 1,1) ) # gives \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 in valid multibyte string\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 error in a UTF-8 locale[] [675] Underfull \hbox (badness 1803) in paragraph at lines 46788--46791 []\T1/ptm/m/n/10 The atomic modes are []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/1 0 , []\T1/pcr/m/n/10 "integer"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "numeric" []\ T1/ptm/m/n/10 (syn-onym []\T1/pcr/m/n/10 "double"[]\T1/ptm/m/n/10 ), Underfull \hbox (badness 3471) in paragraph at lines 46792--46798 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 mode = "any"[]\T1/ptm/m/n/10 , []\T1/pcr/m /n/10 is.vector []\T1/ptm/m/n/10 may re-turn []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/ n/10 for the atomic modes, [][][]\T1/pcr/m/n/10 list[][][] []\T1/ptm/m/n/10 and [676] [677] [678] Underfull \hbox (badness 1014) in paragraph at lines 47020--47023 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me -di-ately, even if [679] [680] Overfull \hbox (36.78088pt too wide) in paragraph at lines 47129--47129 [] \T1/pcr/m/n/10 header = ngettext(n, "Warning message:\n", "Warning mes sages:\n"),[] [681] Overfull \hbox (4.38043pt too wide) in paragraph at lines 47206--47206 []\T1/pcr/m/n/9 ## at the end prints all three warnings, from the \TS1/pcr/m/n /9 '\T1/pcr/m/n/9 option(warn = 0)\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 above[] Overfull \hbox (90.78033pt too wide) in paragraph at lines 47214--47214 []\T1/pcr/m/n/9 x <- 1:36; for(n in 1:13) for(m in 1:12) A <- matrix(x, n,m) # There were 105 warnings ...[] [682] Underfull \hbox (badness 1783) in paragraph at lines 47279--47281 []\T1/pcr/m/n/10 weekdays []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 months []\T1/pt m/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e., [683] Overfull \hbox (25.98041pt too wide) in paragraph at lines 47309--47309 []\T1/pcr/m/n/9 ## Show how easily you get month, day, year, day (of {month, w eek, yr}), ... :[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 47321--47321 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 Even simpler: Date -> Matrix - dropping time info {sec,min,hour, isdst}[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 47324--47324 []\T1/pcr/m/n/9 d2mat(seq(as.Date("2000-02-02"), by=1, length.out=30)) # has R 1.0.0\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s release date[] [684] Underfull \hbox (badness 10000) in paragraph at lines 47386--47391 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 arr.ind == TRUE []\T1/ptm/m/n/10 and []\T1 /pcr/m/n/10 x []\T1/ptm/m/n/10 is an [][][]\T1/pcr/m/n/10 array[][][] []\T1/ptm /m/n/10 (has a [][][]\T1/pcr/m/n/10 dim[][][] []\T1/ptm/m/n/10 at-tribute), the re-sult is Underfull \hbox (badness 2564) in paragraph at lines 47386--47391 []\T1/pcr/m/n/10 arrayInd(which(x), dim(x), dimnames(x))[]\T1/ptm/m/n/10 , name ly a ma-trix whose rows each [685] Underfull \hbox (badness 2818) in paragraph at lines 47484--47490 []\T1/ptm/m/n/10 For a [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 vec- tor []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 with both []\T1/pcr/m/n/10 FALSE []\T1/ ptm/m/n/10 and []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 val-ues, []\T1/pcr/m/n/10 which.min(x) []\T1/ptm/m/n/10 and [686] Overfull \hbox (15.18042pt too wide) in paragraph at lines 47519--47519 []\T1/pcr/m/n/9 ## Find the first occurrence, i.e. the first TRUE, if there is at least one:[] [687] [688] [689] [690] [691] [692] [693] Underfull \hbox (badness 2846) in paragraph at lines 48015--48019 []\T1/pcr/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [694] Overfull \hbox (4.38043pt too wide) in paragraph at lines 48055--48055 []\T1/pcr/m/n/9 .packages(all.available = TRUE) # return all available as char acter vector[] Underfull \hbox (badness 3209) in paragraph at lines 48076--48080 []\T1/pcr/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da rd' reg-exps, in-clud-ing el-e-ments named [695]) (./compiler-pkg.tex [696] Chapter 2. [697] Underfull \hbox (badness 2884) in paragraph at lines 107--121 []\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 options []\T1/ptm/m/n/10 ar-gu-ment can b e used to con-trol com-piler op-er-a-tion. There are cur- Underfull \hbox (badness 10000) in paragraph at lines 107--121 \T1/ptm/m/n/10 rently four op-tions: []\T1/pcr/m/n/10 optimize[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 suppressAll[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 suppressUndef ined[]\T1/ptm/m/n/10 , and [698] [699] [700]) (./datasets-pkg.tex Chapter 3. [701] [702] [703] [704] [705] Overfull \hbox (15.18042pt too wide) in paragraph at lines 297--297 [] \T1/pcr/m/n/9 plot(ff, data = anscombe, col = "red", pch = 21, bg = "orang e", cex = 1.2,[] [706] Overfull \hbox (4.38043pt too wide) in paragraph at lines 375--375 []\T1/pcr/m/n/9 coplot(accel ~ dist | as.factor(event), data = attenu, show.gi ven = FALSE)[] [707] [708] [709] Overfull \hbox (4.38043pt too wide) in paragraph at lines 613--613 [] \T1/pcr/m/n/9 start = c(lrc = log(.35)), algorithm = "plinear", t race = TRUE)[] [710] [711] Underfull \hbox (badness 4779) in paragraph at lines 700--703 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr oupedData", "groupedData", [712] [713] Underfull \hbox (badness 4779) in paragraph at lines 832--835 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr oupedData", "groupedData", [714] [715] Underfull \hbox (badness 1097) in paragraph at lines 1034--1038 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [716] [717] Underfull \hbox (badness 4779) in paragraph at lines 1149--1152 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr oupedData", "groupedData", [718] [719] [720] [721] [722] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1463--1463 []\T1/pcr/m/n/9 plot(names(te), te, type = "h", main = f.tit, xlab = "Eruption time (sec)")[] [723] [724] Underfull \hbox (badness 10000) in paragraph at lines 1548--1551 []\T1/ptm/m/n/10 Finally, []\T1/pcr/m/n/10 freeny []\T1/ptm/m/n/10 is a data fr ame with vari-ables []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lag.q uarterly.revenue[]\T1/ptm/m/n/10 , Underfull \hbox (badness 2903) in paragraph at lines 1548--1551 []\T1/pcr/m/n/10 price.index[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 income.level[]\ T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 market.potential []\T1/ptm/m/n/10 ob-taine d from the above [725] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1641--1641 [] \T1/pcr/m/n/9 xlab = "Hip Angle", ylab = "Knee Angle", main = "\TS1/pcr /m/n/9 '\T1/pcr/m/n/9 gait\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 data : Boy 1")[] Overfull \hbox (112.38031pt too wide) in paragraph at lines 1643--1643 []\T1/pcr/m/n/9 matlines(gait[, -1, 1], gait[, -1, 2], type = "l", lty = 1, co l = adjustcolor("thistle", 1/3))[] [726] [727] [728] Underfull \hbox (badness 4779) in paragraph at lines 1809--1812 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr oupedData", "groupedData", [729] [730] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1907--1907 []\T1/pcr/m/n/9 model1 <- glm(case ~ spontaneous+induced, data = infert, famil y = binomial())[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1915--1915 [] \T1/pcr/m/n/9 model3 <- clogit(case ~ spontaneous+induced+strata(stratum), data = infert)[] [731] [732] Overfull \hbox (25.98041pt too wide) in paragraph at lines 2032--2032 []\T1/pcr/m/n/9 ## Iris versicolor "differs twice as much from I. setosa as fr om I. virginica"[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2037--2037 []\T1/pcr/m/n/9 ## equivalence of legacy array (iris3) and data.frame (iris) r epresentation[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2041--2041 [] \T1/pcr/m/n/9 sub(" W.",".Width", dn i3[[2]])))),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2042--2042 [] \T1/pcr/m/n/9 Species = gl(3, 50, labels = sub("S", "s", sub("V", "v", d ni3[[3]]))))[] [733] [734] [735] Underfull \hbox (badness 4779) in paragraph at lines 2245--2248 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr oupedData", "groupedData", [736] [737] [738] [739] [740] [741] [742] [743] [744] [745] Underfull \hbox (badness 4779) in paragraph at lines 2810--2813 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr oupedData", "groupedData", [746] [747] [748] [749] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3084--3084 []\T1/pcr/m/n/9 plot(bill_dep ~ bill_len, data = penguins, pch = sym[sex], col = pal[species])[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 3092--3092 []\T1/pcr/m/n/9 m <- glm(sex ~ bill_len + bill_dep + body_mass, data = adelie, family = binomial)[] [750] [751] [752] [753] [754] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3420--3420 []\T1/pcr/m/n/9 pairs(quakes, main = "Fiji Earthquakes, N = 1000", cex.main = 1.2, pch = ".")[] [755] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3467--3467 []\T1/pcr/m/n/9 myrandu <- matrix(NA_real_, 400, 3, dimnames = list(NULL, c("x ","y","z")))[] [756] [757] [758] [759] [760] Overfull \hbox (47.58038pt too wide) in paragraph at lines 3773--3773 []\T1/pcr/m/n/9 ## Alaska and Hawaii are placed just off the West Coast (for c ompact map drawing):[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 3775--3775 []\T1/pcr/m/n/9 ## state.center2 := version of state.center with "correct" coo rdinates for AK & HI:[] Overfull \hbox (85.38034pt too wide) in paragraph at lines 3776--3776 []\T1/pcr/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis t.html#Geographic%20Centers[] Underfull \hbox (badness 1259) in paragraph at lines 3833--3836 \T1/ptm/m/n/10 Av. Cir-cu-laire, 3, B-1180 BRUS-SELS Cur-rently at [][]$\T1/pcr /m/n/10 https : / / www . sidc . be / SILSO / [761] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3883--3883 []\T1/pcr/m/n/9 ## How to recreate the "old" sunspot.month (R <= 3.0.3) =: sun spot.month.0[] [762] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3936--3936 []\T1/pcr/m/n/9 (t2 <- c(min( end(sm)[1],end(sy)[1]), 12)) # Dec 1983 (will n ot be updated!)[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3940--3940 [] \T1/pcr/m/n/9 ## The yearly series *is* close to the averages of t he monthly one:[] [763] [764] [765] Underfull \hbox (badness 4779) in paragraph at lines 4088--4091 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr oupedData", "groupedData", [766] [767] [768] Overfull \hbox (9.78043pt too wide) in paragraph at lines 4297--4297 [] \T1/pcr/m/n/9 xlab = "ToothGrowth data: length vs dose, given type of supplement")[] Underfull \hbox (badness 10000) in paragraph at lines 4333--4335 []\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/pcr/m/n/10 h ttps : / / web . archive . org / web / Underfull \hbox (badness 10000) in paragraph at lines 4333--4335 \T1/pcr/m/n/10 20110523225828 / http : / / www . ltrr . arizona . edu / ~hallma n / sitephotos / [769] [770] [771] [772] [773] [774] [775] [776] [777] [778] [779] [780] [781] [782]) (./grDevices-pkg.tex Chapter 4. [783] [784] [785] [786] Underfull \hbox (badness 4752) in paragraph at lines 299--304 []\T1/ptm/m/n/10 Apart from that, []\T1/pcr/m/n/10 axisTicks() []\T1/ptm/m/n/10 just calls the C func-tion []\T1/pcr/m/n/10 CreateAtVector() []\T1/ptm/m/n/10 in Underfull \hbox (badness 2865) in paragraph at lines 299--304 \T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R\T1/pcr/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack -age func-tion [787] Overfull \hbox (9.78043pt too wide) in paragraph at lines 351--351 []\T1/pcr/m/n/9 aX(2, print(ya <- axisTicks(pu[3:4], log = TRUE))) # 10 20 50 100 (y axis)[] [788] [789] [790] Overfull \hbox (6.78088pt too wide) in paragraph at lines 537--537 []\T1/pcr/m/n/10 cairo_pdf(filename = if(onefile) "Rplots.pdf" else "Rplot%03d .pdf",[] [791] [792] [793] [794] [795] [796] Underfull \hbox (badness 2245) in paragraph at lines 919--924 []\T1/ptm/m/n/10 Hexadecimal string col-ors can be in the long hex-adec-i-mal f orm (e.g., []\T1/pcr/m/n/10 "#rrggbb" []\T1/ptm/m/n/10 or [797] Overfull \hbox (31.3804pt too wide) in paragraph at lines 983--983 []\T1/pcr/m/n/9 names(clmult) <- sapply(clmult, function(x) paste(crgb[,x[1]], collapse = ","))[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 990--990 [] \T1/pcr/m/n/9 lattice::cloud(blue ~ red + green, data = as.data.frame(tc ), col = cNms)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 993--993 []\T1/pcr/m/n/9 cNms[isC] # "white" "black" "blue" "cyan" "green" "magenta" "r ed" "yellow"[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 1000--1000 [] \T1/pcr/m/n/9 plot3d (tc, col = cNms, size = 11) # --> rotate w/ mouse; e nlarged corners:[] Underfull \vbox (badness 10000) has occurred while \output is active [798] [799] [800] [801] Underfull \hbox (badness 5175) in paragraph at lines 1239--1241 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [802] [803] [804] Overfull \hbox (25.98041pt too wide) in paragraph at lines 1410--1410 []\T1/pcr/m/n/9 zapsmall(lab <- convertColor(cols, from = "sRGB", to = "Lab", scale.in = 255))[] [805] [806] [807] Underfull \hbox (badness 3302) in paragraph at lines 1671--1675 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of Underfull \hbox (badness 10000) in paragraph at lines 1671--1675 []\T1/pcr/m/n/10 c("LinearGradient", "RadialGradient", "TilingPattern") [808] [809] [810] [811] [812] Underfull \hbox (badness 1565) in paragraph at lines 1962--1967 []\T1/ptm/m/n/10 The de-fault for []\T1/pcr/m/n/10 dev.print []\T1/ptm/m/n/10 i s to pro-duce and print a postscript copy. This will not Underfull \hbox (badness 1354) in paragraph at lines 1962--1967 \T1/ptm/m/n/10 sys-tem: see [][][]\T1/pcr/m/n/10 postscript[][][] []\T1/ptm/m/n /10 for how to set this up. Win-dows users may pre-fer to use [813] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2045--2045 []\T1/pcr/m/n/10 dev2bitmap(file, type = "png16m", height = 7, width = 7, res = 72,[] [814] Underfull \hbox (badness 1184) in paragraph at lines 2086--2096 []\T1/ptm/m/n/10 The types avail-able will de-pend on the ver-sion of []\T1/pcr /m/n/10 ghostscript[]\T1/ptm/m/n/10 , but are likely to in- Underfull \hbox (badness 2057) in paragraph at lines 2086--2096 []\T1/pcr/m/n/10 "tiffg4"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiffgray"[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 "tifflzw"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiffp ack"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiff12nc"[]\T1/ptm/m/n/10 , []\T1/pcr/ m/n/10 "tiff24nc"[]\T1/ptm/m/n/10 , [815] Underfull \hbox (badness 10000) in paragraph at lines 2198--2200 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [816] [817] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2335--2335 []\T1/pcr/m/n/10 embedGlyphs(file, glyphInfo, outfile = file, options = charac ter())[] [818] Underfull \hbox (badness 6758) in paragraph at lines 2386--2389 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are Underfull \hbox (badness 4927) in paragraph at lines 2390--2393 []\T1/pcr/m/n/10 embedGlyphs() []\T1/ptm/m/n/10 is rec-om-mended for []\T1/pcr/ m/n/10 pdf() []\T1/ptm/m/n/10 files that con-tain type-set glyphs (see [819] [820] Underfull \hbox (badness 2326) in paragraph at lines 2509--2519 []\T1/ptm/m/n/10 are given, then it uses those in a call to []\T1/pcr/m/n/10 se tGraphicsEventHandlers []\T1/ptm/m/n/10 to re-place Underfull \hbox (badness 2318) in paragraph at lines 2509--2519 \T1/ptm/m/n/10 any ex-ist-ing han-dlers in the cur-rent de-vice. This is for co m-pat-i-bil-ity with pre-2.12.0 Underfull \hbox (badness 2460) in paragraph at lines 2509--2519 \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions. The cur-rent nor-mal way to set up e vent han-dlers is to set them us-ing Underfull \hbox (badness 1221) in paragraph at lines 2509--2519 []\T1/pcr/m/n/10 setGraphicsEventHandlers []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 setGraphicsEventEnv []\T1/ptm/m/n/10 on one or more graph-ics [821] Overfull \hbox (20.58041pt too wide) in paragraph at lines 2612--2612 []\T1/pcr/m/n/9 dragplot <- function(..., xlim = NULL, ylim = NULL, xaxs = "r" , yaxs = "r") {[] [822] [823] [824] [825] Overfull \hbox (30.78088pt too wide) in paragraph at lines 2869--2869 []\T1/pcr/m/n/10 gray.colors(n, start = 0.3, end = 0.9, gamma = 2.2, alpha, re v = FALSE) Overfull \hbox (30.78088pt too wide) in paragraph at lines 2870--2870 []\T1/pcr/m/n/10 grey.colors(n, start = 0.3, end = 0.9, gamma = 2.2, alpha, re v = FALSE)[] [826] [827] [828] [829] Underfull \hbox (badness 10000) in paragraph at lines 3143--3144 [830] [831] [832] [833] [834] Overfull \hbox (24.78088pt too wide) in paragraph at lines 3472--3472 []\T1/pcr/m/n/10 colorConverter(toXYZ, fromXYZ, name, white = NULL, vectorized = FALSE)[] [835] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3556--3556 []\T1/pcr/m/n/9 zapsmall(luv <- convertColor(cols, from = "sRGB", to = "Luv", scale.in = 255))[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3557--3557 []\T1/pcr/m/n/9 (hex <- convertColor(luv, from = "Luv", to = hexcolor, scale. out = NULL))[] [836] [837] [838] Underfull \hbox (badness 10000) in paragraph at lines 3716--3722 []\T1/pcr/m/n/10 nclass.FD []\T1/ptm/m/n/10 uses the Freedman-Diaconis choice b ased on the inter-quartile range [839] Overfull \hbox (30.78088pt too wide) in paragraph at lines 3791--3791 []\T1/pcr/m/n/10 palette.colors(n = NULL, palette = "Okabe-Ito", alpha, recycl e = FALSE,[] [840] Overfull \hbox (9.78043pt too wide) in paragraph at lines 3883--3883 []\T1/pcr/m/n/9 (palette(gray(seq(0,.9,length.out = 25)))) # gray scales; prin t old palette[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 3903--3903 []\T1/pcr/m/n/9 ## Demonstrate the colors 1:8 in different palettes using a cu stom matplot()[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3910--3910 [] \T1/pcr/m/n/9 matplot(x, type = "l", lwd = 4, lty = 1, col = 1:n, ylab = "", main=main)[] [841] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3917--3917 []\T1/pcr/m/n/9 palROB <- colorRampPalette(c("red", "darkorange2", "blue"), sp ace = "Lab")[] Overfull \hbox (54.78088pt too wide) in paragraph at lines 3968--3968 []\T1/pcr/m/n/10 hcl.colors(n, palette = "viridis", alpha = NULL, rev = FALSE, fixup = TRUE) [842] Underfull \hbox (badness 8170) in paragraph at lines 3997--4000 []\T1/ptm/m/n/10 the type of palettes to list: []\T1/pcr/m/n/10 "qualitative"[] \T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sequential"[]\T1/ptm/m/n/10 , [843] Underfull \hbox (badness 2189) in paragraph at lines 4058--4063 []\T1/ptm/m/n/10 For ex-am-ple, []\T1/pcr/m/n/10 "Dark 3" []\T1/ptm/m/n/10 work s well for shad-ing points or lines in up to five groups, Underfull \hbox (badness 10000) in paragraph at lines 4096--4100 \T1/pcr/m/n/10 wikipedia . org / w / index . php ? title = HCL _ color _ space & oldid = 883465135$[][]\T1/ptm/m/n/10 . [844] Underfull \vbox (badness 10000) has occurred while \output is active [845] [846] Underfull \hbox (badness 1112) in paragraph at lines 4263--4267 []\T1/ptm/m/n/10 as `\T1/pcr/m/n/10 "CP1250.enc"\T1/ptm/m/n/10 ' (Cen-tral Eu-r o-pean), []\T1/pcr/m/n/10 "CP1251.enc" [847] [848] Underfull \hbox (badness 1577) in paragraph at lines 4429--4436 \T1/ptm/m/n/10 PostScript fonts fam-i-lies of those names which are in-cluded ( or cloned) in all com-mon [849] Underfull \hbox (badness 1688) in paragraph at lines 4490--4509 \T1/ptm/m/n/10 cod-ings (ex-cept []\T1/pcr/m/n/10 "TeXtext"[]\T1/ptm/m/n/10 ) a gree over that range. Some en-cod-ings are su-per-sets of Underfull \hbox (badness 2012) in paragraph at lines 4490--4509 \T1/ptm/m/n/10 ISO-Latin1. How-ever, if ac-cented and spe-cial char-ac-ters do not come out as you ex- [850] [851] Underfull \hbox (badness 5939) in paragraph at lines 4716--4723 []\T1/ptm/m/n/10 arguments []\T1/pcr/m/n/10 width[]\T1/ptm/m/n/10 , []\T1/pcr/m /n/10 height[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1 /pcr/m/n/10 family[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 title[]\T1/ptm/m/n/10 , [ ]\T1/pcr/m/n/10 fonts[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1448) in paragraph at lines 4716--4723 []\T1/pcr/m/n/10 version[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 paper[]\T1/ptm/m/n/ 10 , []\T1/pcr/m/n/10 encoding[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 bg[]\T1/ptm/m /n/10 , []\T1/pcr/m/n/10 fg[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pointsize[]\T1/p tm/m/n/10 , []\T1/pcr/m/n/10 pagecentre[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4716--4723 []\T1/pcr/m/n/10 colormodel[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 useDingbats[]\T1 /ptm/m/n/10 , []\T1/pcr/m/n/10 useKerning[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 fi llOddEven[]\T1/ptm/m/n/10 , [852] [853] [854]pdfTeX warning (ext4): destination with the same identifier (n ame{Rfn.symbol}) has been already used, duplicate ignored \relax l.4896 \aliasA{symbol}{plotmath}{symbol} [855] [856] Underfull \vbox (badness 10000) has occurred while \output is active [857] [858] [859] [860] [861] [862] Underfull \hbox (badness 1348) in paragraph at lines 5462--5465 []\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, [][]$\T1/pcr/m/n/10 https : / / ww w . iso . org / standard / 34342 . html$[][]\T1/ptm/m/n/10 . See also [863] Overfull \hbox (31.3804pt too wide) in paragraph at lines 5488--5488 []\T1/pcr/m/n/9 ## Not run: dev.print(png, filename = "myplot.png", width = 10 24, height = 768)[] Underfull \hbox (badness 4582) in paragraph at lines 5529--5535 []\T1/ptm/m/n/10 For use with []\T1/pcr/m/n/10 onefile = FALSE[]\T1/ptm/m/n/10 , give a C in-te-ger for-mat such as [864] [865] [866] Underfull \hbox (badness 7344) in paragraph at lines 5768--5770 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso Underfull \hbox (badness 7397) in paragraph at lines 5779--5783 [][][]\T1/pcr/m/n/10 postscriptFonts[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/ 10 Devices[][][][]\T1/ptm/m/n/10 , and [][][]\T1/pcr/m/n/10 check.options[][][] []\T1/ptm/m/n/10 which is called from both [867] [868] Underfull \hbox (badness 1552) in paragraph at lines 5907--5916 []\T1/pcr/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Bookman"[]\T1 /ptm/m/n/10 , []\T1/pcr/m/n/10 "Courier"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "He lvetica"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Helvetica-Narrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5907--5916 []\T1/pcr/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Pal atino" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/pc r/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5907--5916 []\T1/pcr/m/n/10 "URWBookman"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "NimbusMon"[]\ T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "NimbusSan" []\T1/ptm/m/n/10 (syn-onym []\T1/p cr/m/n/10 "URWHelvetica"[]\T1/ptm/m/n/10 ), Underfull \hbox (badness 2221) in paragraph at lines 5917--5919 []\T1/ptm/m/n/10 There are also map-pings for []\T1/pcr/m/n/10 "ComputerModern" []\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ComputerModernItalic" []\T1/ptm/m/n/10 and [869] Underfull \hbox (badness 4686) in paragraph at lines 5948--5954 []\T1/pcr/m/n/10 "Japan1"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Japan1HeiMin"[]\T 1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Japan1GothicBBB"[]\T1/ptm/m/n/10 , and []\T1/p cr/m/n/10 "Japan1Ryumin" []\T1/ptm/m/n/10 for [870] Underfull \hbox (badness 5388) in paragraph at lines 5973--5978 []\T1/pcr/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/p cr/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu / [871] [872] [873] Overfull \hbox (6.78088pt too wide) in paragraph at lines 6185--6185 []\T1/pcr/m/n/10 quartz.save(file, type = "png", device = dev.cur(), dpi = 100 , ...)[] [874] Underfull \hbox (badness 10000) in paragraph at lines 6272--6274 []\T1/ptm/m/n/10 Calling []\T1/pcr/m/n/10 quartz() []\T1/ptm/m/n/10 sets [][][] \T1/pcr/m/n/10 .Device[][][] []\T1/ptm/m/n/10 to []\T1/pcr/m/n/10 "quartz" []\T 1/ptm/m/n/10 for on-screen de-vices and to [875] [876] Overfull \hbox (20.58041pt too wide) in paragraph at lines 6397--6397 [] \T1/pcr/m/n/9 quartzFonts("mono") # the list(mono = ..) sublist o f quartzFonts()[] [877] [878] [879] Underfull \hbox (badness 1803) in paragraph at lines 6558--6561 \T1/ptm/m/n/10 play List", [][]$\T1/pcr/m/n/10 https : / / stattech . wordpress . fos . auckland . ac . nz / 2015 / 12 / 21 / [880] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6648--6648 []\T1/pcr/m/n/9 rgb((0:15)/15, green = 0, blue = 0, names = paste("red", 0:15, sep = "."))[] Underfull \hbox (badness 10000) in paragraph at lines 6662--6665 []\T1/pcr/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r ed/green/blue) into HSV space [881] [882] [883] [884] Overfull \hbox (25.98041pt too wide) in paragraph at lines 6882--6882 []\T1/pcr/m/n/9 p <- persp(x, y, fxy <- outer(x,y), phi = 20, theta = 15, r = 3, ltheta = -75,[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 6893--6893 []\T1/pcr/m/n/9 ## now some "horizontal rays" (going from center to very left or very right):[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 6895--6895 [] \T1/pcr/m/n/9 lines(trans3d(x=seq(x1, x2, by=0.5), y= -0.7, z = z, pmat = p, continuous = CNT),[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 6897--6897 []\T1/pcr/m/n/9 doHor(-10, 0, z = -0.5, col = 2) # x in [-10, 0] -- to the v ery left : fine[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 6898--6898 []\T1/pcr/m/n/9 doHor(-.5, 2, z = -0.52,col = 4) # x in [-0.5, 2] only {to th e right} --> all fine[] Overfull \hbox (117.7803pt too wide) in paragraph at lines 6899--6899 []\T1/pcr/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro blem (without \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 continuous=TRUE\TS1/pcr/m/n/9 '\T1/ pcr/m/n/9 ):[] [885] [886] Overfull \hbox (0.78088pt too wide) in paragraph at lines 7031--7031 []\T1/pcr/m/n/10 windows(width, height, pointsize, record, rescale, xpinch, yp inch, Overfull \hbox (0.78088pt too wide) in paragraph at lines 7038--7038 []\T1/pcr/m/n/10 win.metafile(filename = "", width = 7, height = 7, pointsize = 12,[] [887] [888] [889] [890] Underfull \hbox (badness 10000) in paragraph at lines 7305--7310 []\T1/ptm/m/n/10 arguments []\T1/pcr/m/n/10 width[]\T1/ptm/m/n/10 , []\T1/pcr/m /n/10 height[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pointsize[]\T1/ptm/m/n/10 , []\ T1/pcr/m/n/10 record[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 rescale[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1803) in paragraph at lines 7305--7310 []\T1/pcr/m/n/10 xpinch[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 ypinch[]\T1/ptm/m/n/ 10 , []\T1/pcr/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 canvas[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 gamma[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 xpos[]\T1/ptm/m /n/10 , []\T1/pcr/m/n/10 ypos[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 buffered[]\T1/ ptm/m/n/10 , Underfull \hbox (badness 2941) in paragraph at lines 7305--7310 []\T1/pcr/m/n/10 restoreConsole[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 clickToConfi rm[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 title[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 fillOddEven []\T1/ptm/m/n/10 and [891] [892] Overfull \hbox (36.7804pt too wide) in paragraph at lines 7413--7413 []\T1/pcr/m/n/9 windows() # make sure we have the right device type (availabl e on Windows only)[] Underfull \hbox (badness 3590) in paragraph at lines 7452--7455 []\T1/ptm/m/n/10 The \T1/phv/m/n/10 R \T1/ptm/m/n/10 func-tion is a wrap-per fo r two de-vices, one based on Xlib ([][]$\T1/pcr/m/n/10 https : / / Underfull \hbox (badness 2393) in paragraph at lines 7452--7455 \T1/pcr/m/n/10 en . wikipedia . org / wiki / Xlib$[][]\T1/ptm/m/n/10 ) and one us-ing cairo-graph-ics ([][]$\T1/pcr/m/n/10 https : / / www . Overfull \hbox (12.78088pt too wide) in paragraph at lines 7463--7463 [] \T1/pcr/m/n/10 fonts, family, xpos, ypos, title, type, antialias, symbol family)[] [893] Underfull \hbox (badness 1189) in paragraph at lines 7528--7530 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [894] Underfull \hbox (badness 10000) in paragraph at lines 7633--7635 []\T1/pcr/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ K lan-guages and [895] Underfull \hbox (badness 10000) in paragraph at lines 7678--7685 []\T1/ptm/m/n/10 Problems with in-cor-rect ren-der-ing of sym-bols (e.g., of [] \T1/pcr/m/n/10 quote(pi) []\T1/ptm/m/n/10 and Underfull \hbox (badness 2469) in paragraph at lines 7678--7685 []\T1/pcr/m/n/10 expression(10^degree)[]\T1/ptm/m/n/10 ) have been seen on Linu x sys-tems which have the Wine [896] Underfull \hbox (badness 5607) in paragraph at lines 7760--7764 []\T1/pcr/m/n/10 type = "Xlib" []\T1/ptm/m/n/10 sup-ports `True-Color', `Pseu-d o-Color', `GrayScale', []\T1/pcr/m/n/10 StaticGray []\T1/ptm/m/n/10 and [897] Overfull \hbox (20.58041pt too wide) in paragraph at lines 7812--7812 [] \T1/pcr/m/n/9 function(...) grDevices::X11.options(width = 8, height = 6, xpos = 0,[] [898] [899] Overfull \hbox (63.78036pt too wide) in paragraph at lines 7985--7985 []\T1/pcr/m/n/9 op <- options(warn = 2)# ==> warnings would be errors, we supp ress the one "we know":[] [900] Underfull \hbox (badness 1231) in paragraph at lines 8024--8026 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., []\T1/pcr/m/n/10 number[i] []\T1/ptm/m/n/10 is the mul-ti-plic-ity of Overfull \hbox (9.78043pt too wide) in paragraph at lines 8051--8051 []\T1/pcr/m/n/9 xy <- data.frame(x = round(sort(stats::rnorm(100))), y = stats ::rnorm(100))[] [901] [902] [903]) (./graphics-pkg.tex [904] Chapter 5. Underfull \hbox (badness 4647) in paragraph at lines 17--19 []\T1/ptm/m/n/10 For a com-plete list of func-tions with in-di-vid-ual help pag es, use []\T1/pcr/m/n/10 library(help = [905] [906] [907] [908] [909] [910] [911] Overfull \hbox (6.05087pt too wide) in paragraph at lines 451--451 [] \T1/pcr/m/n/10 gap.axis <- if(perpendicular(side, las)) 0.25 else 1[] Underfull \hbox (badness 4048) in paragraph at lines 483--489 []\T1/ptm/m/n/10 When []\T1/pcr/m/n/10 at = NULL[]\T1/ptm/m/n/10 , pretty tick mark lo-ca-tions are com-puted in-ter-nally (the same way [912] [913] Overfull \hbox (47.58038pt too wide) in paragraph at lines 581--581 []\T1/pcr/m/n/9 ## now shrink the window (in x- and y-direction) and observe t he axis labels drawn[] [914] Overfull \hbox (15.18042pt too wide) in paragraph at lines 698--698 []\T1/pcr/m/n/9 axis.Date(3, at = as.integer(as.Date("2023-04-01")), col.axis = "darkgreen")[] [915] Overfull \hbox (15.18042pt too wide) in paragraph at lines 713--713 []\T1/pcr/m/n/9 axis.POSIXct(3, at = as.POSIXct("2022-10-01 00:01:30"), col.ax is = "orange")[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 718--718 []\T1/pcr/m/n/9 axis.POSIXct(3, at = as.numeric(as.POSIXct("2022-10-01 00:00:3 0")) + 0.25,[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 719--719 [] \T1/pcr/m/n/9 col.axis = "forestgreen", col = "darkgreen", m gp = c(3,2,0))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 725--725 []\T1/pcr/m/n/9 plot(data.frame(HST, y = 1), xaxt = "n", xlab = "Hawaii Standa rd Time (HST)")[] Underfull \hbox (badness 10000) in paragraph at lines 752--756 []\T1/ptm/m/n/10 numeric vec-tor of length three, de-fault-ing to [][][]\T1/pcr /m/n/10 par[][][]("xaxp") []\T1/ptm/m/n/10 or Underfull \hbox (badness 3250) in paragraph at lines 752--756 [][][]\T1/pcr/m/n/10 par[][][]("yaxp") []\T1/ptm/m/n/10 de-pend-ing on the []\T 1/pcr/m/n/10 side []\T1/ptm/m/n/10 ar-gu-ment ([]\T1/pcr/m/n/10 par("xaxp") []\ T1/ptm/m/n/10 if [916] [917] Overfull \hbox (4.38043pt too wide) in paragraph at lines 839--839 [] \T1/pcr/m/n/9 axp = c(get_axp(usr.i), n = 3), log = TRUE, n intLog = 5))[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 876--876 [] \T1/pcr/m/n/10 add = FALSE, ann = !add && par("ann"), args.legend = NULL, ...)[] [918] [919] Underfull \hbox (badness 10000) in paragraph at lines 1021--1025 [][][]\T1/pcr/m/n/10 plot[][][](..., type = "h")[]\T1/ptm/m/n/10 , [][][]\T1/pc r/m/n/10 dotchart[][][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 hist[][][] []\T1 /ptm/m/n/10 for bars of a \T1/ptm/m/it/10 con-tin-u-ous \T1/ptm/m/n/10 vari-abl e. [920] Overfull \hbox (133.98029pt too wide) in paragraph at lines 1038--1038 [] \T1/pcr/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 1040--1040 []\T1/pcr/m/n/9 (xt <- xtabs(Freq ~ Survived + Class + Sex, d.Titanic, subset = Age=="Adult"))[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 1042--1042 []\T1/pcr/m/n/9 mosaicplot(xt[,,"Male"], main = "mosaicplot(Freq ~ Class + Sur vived, *)", color=TRUE)[] [921] [922] [923] [924] Overfull \hbox (31.3804pt too wide) in paragraph at lines 1325--1325 []\T1/pcr/m/n/9 # *add* notches (somewhat funny here <--> warning "notches .. outside hinges"):[] [925] [926] [927] Underfull \hbox (badness 2503) in paragraph at lines 1487--1496 \T1/ptm/m/n/10 when []\T1/pcr/m/n/10 horizontal []\T1/ptm/m/n/10 is false, and []\T1/pcr/m/n/10 xlim []\T1/ptm/m/n/10 hor-i-zon-tally. []\T1/pcr/m/n/10 xaxt[] \T1/ptm/m/n/10 , []\T1/pcr/m/n/10 yaxt[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3375) in paragraph at lines 1522--1524 []\T1/ptm/m/n/10 whisker line type (de-fault: []\T1/pcr/m/n/10 "dashed"[]\T1/pt m/m/n/10 ), [928] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1594--1594 []\T1/pcr/m/n/9 boxplot(z, col.axis = "skyblue3", main = "boxplot(*, col.axi s=..,main=..)")[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1595--1595 []\T1/pcr/m/n/9 plot(z[[1]], col.axis = "skyblue3", main = "plot(*, col.axi s=..,main=..)")[] [929] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1601--1601 []\T1/pcr/m/n/9 splus <- list(boxwex = 0.4, staplewex = 1, outwex = 1, boxfill = "grey40",[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 1602--1602 [] \T1/pcr/m/n/9 medlwd = 3, medcol = "white", whisklty = 3, outl ty = 1, outpch = NA)[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 1635--1635 [] \T1/pcr/m/n/10 yaxlabels = NULL, xlim = NULL, ylim = c(0, 1), weights = NU LL, ...)[] [930] [931] [932] [933] [934] Underfull \hbox (badness 10000) in paragraph at lines 1908--1914 [][][]\T1/pcr/m/n/10 contourLines[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 filled.contour[][][] []\T1/ptm/m/n/10 for color-filled con-tours, [][][]\T1/pcr /m/n/10 contourplot[][][] []\T1/ptm/m/n/10 (and Overfull \hbox (9.78043pt too wide) in paragraph at lines 1928--1928 []\T1/pcr/m/n/9 contour(x, x, z, ylim = c(-6, 6), nlevels = 20, lty = 2, metho d = "simple",[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 1940--1940 []\T1/pcr/m/n/9 contour(z, levels=levs[-c(1,length(levs))], col = 1:5, lwd = 1 :3 *1.5, lty = 1:3)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1956--1956 []\T1/pcr/m/n/9 plot(x = 0, y = 0, type = "n", xlim = rx, ylim = ry, xlab = "" , ylab = "")[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1965--1965 []\T1/pcr/m/n/9 plot(x = 0, y = 0, type = "n", xlim = rx, ylim = ry, xlab = "" , ylab = "")[] [935] [936] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2050--2050 []\T1/pcr/m/n/10 coplot(formula, data, given.values, panel = points, rows, col umns, [937] [938] Overfull \hbox (31.3804pt too wide) in paragraph at lines 2179--2179 []\T1/pcr/m/n/9 coplot(lat ~ long | depth, data = quakes, given.values = given .depth, rows = 1)[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2184--2184 []\T1/pcr/m/n/9 coplot(ll.dm, data = quakes, number = c(4, 7), show.given = c( TRUE, FALSE))[] [939] [940] Overfull \hbox (18.78088pt too wide) in paragraph at lines 2358--2358 []\T1/pcr/m/n/10 dotchart(x, labels = NULL, groups = NULL, gdata = NULL, offse t = 1/8, Overfull \hbox (54.78088pt too wide) in paragraph at lines 2359--2359 [] \T1/pcr/m/n/10 ann = par("ann"), xaxt = par("xaxt"), frame.plot = T RUE, log = "",[] [941] Underfull \hbox (badness 1430) in paragraph at lines 2389--2391 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/pcr/m/n/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [942] Overfull \hbox (78.78088pt too wide) in paragraph at lines 2470--2470 [] \T1/pcr/m/n/10 color.palette = function(n) hcl.colors(n, "YlO rRd", rev = TRUE),[] Overfull \hbox (66.78088pt too wide) in paragraph at lines 2472--2472 [] \T1/pcr/m/n/10 plot.title, plot.axes, key.title, key.axes, ke y.border = NULL,[] Underfull \hbox (badness 1009) in paragraph at lines 2482--2489 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [943] Underfull \hbox (badness 7273) in paragraph at lines 2565--2569 [][][]\T1/pcr/m/n/10 contour[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 image [][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 hcl.colors[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gray.colors[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 palette[][][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 contourplot[][][] []\T1/p tm/m/n/10 and [944] [945] [946] [947] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2822--2822 []\T1/pcr/m/n/9 ## maybe change the desired number of tick marks: par(lab = c (mx, my, 7))[] [948] Overfull \hbox (42.18039pt too wide) in paragraph at lines 2843--2843 []\T1/pcr/m/n/9 plot(8:270, log="xy") ; grid() # at (1, 10, 100); if preferrin g "all" grid lines:[] [949] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2882--2882 [] \T1/pcr/m/n/10 density = NULL, angle = 45, col = "lightgray", border = NULL,[] [950] Underfull \hbox (badness 1226) in paragraph at lines 3008--3012 \T1/pcr/m/n/10 1)[]\T1/ptm/m/n/10 , they are the rel-a-tive fre-quen-cies []\T1 /pcr/m/n/10 counts/n []\T1/ptm/m/n/10 and in gen-eral sat-isfy [951] Overfull \hbox (15.18042pt too wide) in paragraph at lines 3061--3061 []\T1/pcr/m/n/9 ## Extreme outliers; the "FD" rule would take very large numbe r of \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 breaks\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 :[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3065--3065 []\T1/pcr/m/n/9 length(hh$breaks) ## typically 1 million -- though 1e6 was "a suggestion only"[] [952] Underfull \hbox (badness 10000) in paragraph at lines 3127--3130 [][][]\T1/ptm/m/n/10 graphical pa-ram-e-ters[][][], or ar-gu-ments to [][][]\T1 /pcr/m/n/10 hist.default[][][] []\T1/ptm/m/n/10 such as [953] Overfull \hbox (15.18042pt too wide) in paragraph at lines 3178--3178 []\T1/pcr/m/n/9 ## The default fuzz in hist.default() "kills" this, with a "w rong" message:[] [954] [955] Overfull \hbox (36.7804pt too wide) in paragraph at lines 3342--3342 []\T1/pcr/m/n/9 identifyPch <- function(x, y = NULL, n = length(x), plot = FAL SE, pch = 19, ...)[] Overfull \hbox (79.98035pt too wide) in paragraph at lines 3347--3347 [] \T1/pcr/m/n/9 ans <- identify(x[!sel], y[!sel], labels = which(!sel) , n = 1, plot = plot, ...)[] [956] [957] Underfull \hbox (badness 10000) in paragraph at lines 3489--3494 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 useRaster []\T1/ptm/m/n/10 is not spec-i-f ied, raster im-ages are used when the Underfull \hbox (badness 10000) in paragraph at lines 3489--3494 [][][]\T1/pcr/m/n/10 getOption[][][]("preferRaster") []\T1/ptm/m/n/10 is true, the grid is reg-u-lar and ei-ther Underfull \hbox (badness 10000) in paragraph at lines 3489--3494 [][][]\T1/pcr/m/n/10 dev.capabilities[][][]("rasterImage")$rasterImage []\T1/pt m/m/n/10 is []\T1/pcr/m/n/10 "yes" []\T1/ptm/m/n/10 or it is [958] Overfull \hbox (31.3804pt too wide) in paragraph at lines 3524--3524 []\T1/pcr/m/n/9 # Visualize as matrix. Need to transpose matrix and then flip it horizontally:[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 3526--3526 []\T1/pcr/m/n/9 imageM <- function(m, grid = max(dim(m)) <= 25, asp = (nrow(m) -1)/(ncol(m)-1), ...) {[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 3529--3529 [] \T1/pcr/m/n/9 axis(side, at=at, labels=as.character(j+1L), col="gray ", col.axis=1, ...)[] [959] [960] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3686--3686 []\T1/pcr/m/n/9 barplot(yhist$counts, axes = FALSE, xlim = c(0, top), space = 0, horiz = TRUE)[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 3705--3705 [] \T1/pcr/m/n/10 box.lwd = par("lwd"), box.lty = par("lty"), box.col = par("fg"),[] [961] Overfull \hbox (12.78088pt too wide) in paragraph at lines 3709--3709 [] \T1/pcr/m/n/10 text.font = NULL, merge = do.lines && has.pch, trace = FALSE,[] [962] [963] Overfull \hbox (36.7804pt too wide) in paragraph at lines 3894--3894 [] \T1/pcr/m/n/9 text (1, y.leg[i] - 0.1, paste("cex=", formatC(cexv[i])), c ex = 0.8, adj = 0)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3895--3895 [] \T1/pcr/m/n/9 legend(3, y.leg[i], leg.txt, pch = "sSvV", col = c(1, 3), ce x = cexv[i])[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3899--3899 [] \T1/pcr/m/n/9 cex = 1+(-1:2)/8, trace = TRUE)# trace: show computed l engths & coords[] [964] Overfull \hbox (15.18042pt too wide) in paragraph at lines 3909--3909 [] \T1/pcr/m/n/9 title("legend(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 top\TS1/pcr/m/n/ 9 '\T1/pcr/m/n/9 , lty = c(2, -1, 1), pch = c(NA, 3, 4), merge = TRUE)",[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 3940--3940 [] \T1/pcr/m/n/9 "text(c(3,3),2:3,\"c(rect(...)\")"), adj = c(0, 0.3))[] Underfull \vbox (badness 10000) has occurred while \output is active [965] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3966--3966 []\T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 Filled\TS1/pcr/m/n/9 ' \T1/pc r/m/n/9 boxes -- see also example(barplot) which may call legend(*, fill=)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3968--3968 []\T1/pcr/m/n/9 legend("topright", rownames(VADeaths), fill = gray.colors(nrow (VADeaths)))[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3979--3979 []\T1/pcr/m/n/9 legend("bottomright", paste("sin(", 1:7, "pi * x)"), col = 1:7 , lty = 1:7,[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3994--3994 []\T1/pcr/m/n/9 legend(.4,1, "sin(c x)", pch = 21, pt.bg = "white", lty = 1, c ol = "blue")[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 4002--4002 []\T1/pcr/m/n/9 legend("topleft", "(x,y)", pch=1, title= "topleft, inset = .05", inset = .05)[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 4004--4004 []\T1/pcr/m/n/9 legend("topright", "(x,y)", pch=1, title= "topright, inset = .02",inset = .02)[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 4012--4012 [] \T1/pcr/m/n/9 plot(1, type = "n", axes = FALSE, ann = FALSE); title(paste ("text.font =",i))[] Underfull \vbox (badness 10000) has occurred while \output is active [966] Overfull \hbox (15.18042pt too wide) in paragraph at lines 4022--4022 []\T1/pcr/m/n/9 legend("bottomleft", c("This legend", "has", "optimally sized" , "columns."),[] Underfull \hbox (badness 10000) in paragraph at lines 4084--4088 [][][]\T1/pcr/m/n/10 lines.formula[][][] []\T1/ptm/m/n/10 for the for-mula meth od; [][][]\T1/pcr/m/n/10 points[][][][]\T1/ptm/m/n/10 , par-tic-u-larly for []\ T1/pcr/m/n/10 type %in% [967] [968] Overfull \hbox (6.78088pt too wide) in paragraph at lines 4196--4196 [] \T1/pcr/m/n/10 log = "", ..., add = FALSE, verbose = getOption("verb ose"))[] [969] [970] Overfull \hbox (25.98041pt too wide) in paragraph at lines 4344--4344 []\T1/pcr/m/n/9 nd <- length(dv <- seq(as.Date("1959-02-21"), by = "weeks", le ngth.out = 100))[] Underfull \vbox (badness 10000) has occurred while \output is active [971] [972] Underfull \hbox (badness 3930) in paragraph at lines 4431--4433 []\T1/ptm/m/n/10 The mag-ni-fi-ca-tion to be used for axis an-no-ta-tion, as a mul-ti-ple of [973] [974] [975] [976] [977] Underfull \hbox (badness 1286) in paragraph at lines 4747--4750 []\T1/ptm/m/n/10 which draws the ti-tle. You may want to spec-ify []\T1/pcr/m/n /10 oma []\T1/ptm/m/n/10 when chang-ing Underfull \hbox (badness 3229) in paragraph at lines 4755--4760 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [978] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4851--4851 []\T1/pcr/m/n/9 pairs(USJudgeRatings, lower.panel = panel.smooth, upper.panel = panel.cor,[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4856--4856 [] \T1/pcr/m/n/9 main = "Lengths and Widths in [log]", line.main=1.5, oma =c(2,2,3,2))[] [979] [980] Underfull \hbox (badness 1264) in paragraph at lines 5117--5130 \T1/ptm/m/n/10 func-tions such as [][][]\T1/pcr/m/n/10 plot.default[][][][]\T1/ ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.window[][][][]\T1/ptm/m/n/10 , [][][]\T1 /pcr/m/n/10 points[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lines[][][][]\T 1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 abline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc r/m/n/10 axis[][][][]\T1/ptm/m/n/10 , [981] [982] [983] Underfull \hbox (badness 10000) in paragraph at lines 5383--5386 [984 ] Underfull \hbox (badness 10000) in paragraph at lines 5444--5446 Underfull \vbox (badness 10000) has occurred while \output is active [985] [986 ] [987] [988] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5694--5694 []\T1/pcr/m/n/9 c(prof.pilots = 16, lawyers = 11, farmers = 10, salesmen = 9, physicians = 9,[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5695--5695 [] \T1/pcr/m/n/9 mechanics = 6, policemen = 6, managers = 6, engineers = 5, t eachers = 4,[] [989] [990] [991] Overfull \hbox (25.98041pt too wide) in paragraph at lines 5912--5912 []\T1/pcr/m/n/9 points(trans3d(xy[,1], xy[,2], z = 6, pmat = res), co l = 2, pch = 16)[] [992] [993] [994] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6059--6059 []\T1/pcr/m/n/9 pie(c(Sky = 78, "Sunny side of pyramid" = 17, "Shady side of p yramid" = 5),[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 6060--6060 [] \T1/pcr/m/n/9 init.angle = 315, col = c("deepskyblue", "yellow", "yellow 3"), border = FALSE)[] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha s been already used, duplicate ignored \relax l.6119 \aliasA{plot}{plot.default}{plot} [995] [996] [997] [998] [999] [1000] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6462--6462 []\T1/pcr/m/n/9 plot(PlantGrowth$group, axes = FALSE, main = "no axes") # ext remely silly[] [1001] [1002] Overfull \hbox (66.78088pt too wide) in paragraph at lines 6586--6586 [] \T1/pcr/m/n/10 main = paste("Histogram of", paste(x$xname, co llapse = "\n")),[] [1003] [1004] [1005] [1006] Underfull \hbox (badness 10000) in paragraph at lines 6892--6894 []\T1/ptm/m/n/10 background (fill) color for the open plot sym-bols 21:25: see [1007] [1008] Underfull \hbox (badness 1028) in paragraph at lines 6985--6987 []\T1/ptm/m/n/10 character (or sym-bol) ex-pan-sion: a nu-mer-i-cal vec-tor. Th is works as a mul-ti-ple of Overfull \hbox (31.57222pt too wide) in paragraph at lines 7026--7027 [][] [1009 ] Overfull \hbox (20.58041pt too wide) in paragraph at lines 7120--7120 []\T1/pcr/m/n/9 plot(x, sin(x), type = "o", pch = 21, bg = par("bg"), col = "b lue", cex = .6,[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 7124--7124 []\T1/pcr/m/n/9 ## Illustration of pch = 0:25 (as in the figure shown above in PDF/HTML help)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 7125--7125 []\T1/pcr/m/n/9 ## Not run: png("pch.png", height = 0.7, width = 7, res = 100, units = "in")[] [1010] Overfull \hbox (31.3804pt too wide) in paragraph at lines 7149--7149 [] \T1/pcr/m/n/9 plot(rx, ry, type = "n", axes = FALSE, xlab = "", ylab = "", main = main)[] Underfull \vbox (badness 10000) has occurred while \output is active [1011] [1012] Underfull \hbox (badness 10000) in paragraph at lines 7271--7273 []\T1/ptm/m/n/10 The code im-ple-ment-ing poly-gon shad-ing was do-nated by Kev in Buhr Overfull \hbox (15.18042pt too wide) in paragraph at lines 7298--7298 [] \T1/pcr/m/n/9 polygon(x, y, xpd = xpd, col = "orange", lty = 2, lwd = 2, b order = "red")[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7304--7304 []\T1/pcr/m/n/9 yy <- c(c(0, cumsum(stats::rnorm(n))), rev(c(0, cumsum(stats:: rnorm(n)))))[] [1013] Underfull \hbox (badness 2600) in paragraph at lines 7361--7363 []\T1/ptm/m/n/10 character value spec-i-fy-ing the path fill mode: ei-ther []\T 1/pcr/m/n/10 "winding" []\T1/ptm/m/n/10 or [1014] [1015] [1016] [1017] Overfull \hbox (9.78043pt too wide) in paragraph at lines 7593--7593 []\T1/pcr/m/n/9 rect(100+i, 300+i, 150+i, 380+i, col = rainbow(11, start = 0.7 , end = 0.1))[] [1018] [1019] [1020] [1021] [1022] [1023] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7980--7980 []\T1/pcr/m/n/9 Lab.palette <- colorRampPalette(c("blue", "orange", "red"), sp ace = "Lab")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 7984--7984 []\T1/pcr/m/n/9 ## label the 20 very lowest-density points,the "outliers" (wit h obs.number):[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 7996--7996 []\T1/pcr/m/n/9 pairs(y, panel = function(...) smoothScatter(..., nrpoints = 0 , add = TRUE),[] [1024] Overfull \hbox (36.78088pt too wide) in paragraph at lines 8023--8023 [] \T1/pcr/m/n/10 xlim = NULL, ylim = c(0, 1), axes = TRUE, weights = NULL, ...)[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 8032--8032 [] \T1/pcr/m/n/10 subset = NULL, weights = NULL, drop.unused.levels = FALSE)[] [1025] [1026] [1027] [1028] [1029] Overfull \hbox (9.78043pt too wide) in paragraph at lines 8348--8348 []\T1/pcr/m/n/9 stars(USJudgeRatings, locations = c(0, 0), scale = FALSE, radi us = FALSE,[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 8351--8351 []\T1/pcr/m/n/9 stars(USJudgeRatings, locations = c(0, 0), scale = FALSE, radi us = FALSE,[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 8355--8355 [] \T1/pcr/m/n/9 draw.segments = TRUE, col.segments = 0, col.stars = 1:10 , key.loc = 0:1,[] [1030] [1031] [1032] Overfull \hbox (30.78088pt too wide) in paragraph at lines 8541--8541 []\T1/pcr/m/n/10 strwidth(s, units = "user", cex = NULL, font = NULL, vfont = NULL, ...) Overfull \hbox (36.78088pt too wide) in paragraph at lines 8542--8542 []\T1/pcr/m/n/10 strheight(s, units = "user", cex = NULL, font = NULL, vfont = NULL, ...)[] [1033] [1034] Overfull \hbox (0.78088pt too wide) in paragraph at lines 8646--8646 []\T1/pcr/m/n/10 sunflowerplot(formula, data = NULL, xlab = NULL, ylab = NULL, ...,[] [1035] Underfull \hbox (badness 1112) in paragraph at lines 8705--8709 []\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 number[i] == 1[]\T1/ptm/m/n/10 , a (sligh tly en-larged) usual plot-ting sym-bol ([]\T1/pcr/m/n/10 pch[]\T1/ptm/m/n/10 ) is drawn. For [1036] Overfull \hbox (20.58041pt too wide) in paragraph at lines 8767--8767 []\T1/pcr/m/n/9 sunflowerplot(iris[, 3:4], cex = .2, cex.fact = 1, size = .035 , seg.lwd = .8)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8782--8782 []\T1/pcr/m/n/9 sunflowerplot(rnorm(100), rnorm(100), number = rpois(n = 100, lambda = 2),[] [1037] [1038] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8918--8918 []\T1/pcr/m/n/9 text(x, y, apply(format(round(z3, digits = 2)), 1, paste, coll apse = ","),[] [1039] [1040] Overfull \hbox (4.38043pt too wide) in paragraph at lines 9112--9112 [] \T1/pcr/m/n/9 "Le français, c\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 est facile: Règles, Liberté, Egalité, Fraternité...")[] [1041] Underfull \hbox (badness 1215) in paragraph at lines 9140--9142 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/pcr/m /n/10 par(c("font.sub", Underfull \hbox (badness 1584) in paragraph at lines 9174--9180 []\T1/ptm/m/n/10 The po-si-tions of []\T1/pcr/m/n/10 xlab[]\T1/ptm/m/n/10 , []\ T1/pcr/m/n/10 ylab []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 sub []\T1/ptm/m/n/10 a re []\T1/pcr/m/n/10 line []\T1/ptm/m/n/10 (de-fault for []\T1/pcr/m/n/10 xlab [ ]\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 ylab []\T1/ptm/m/n/10 be-ing [1042]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni ts}) has been already used, duplicate ignored \relax l.9222 \HeaderA{units}{Graphical Units}{units} pdfTeX warning (ext4): destinatio n with the same identifier (name{Rfn.units.1}) has been already used, duplicate ignored \relax l.9222 \HeaderA{units}{Graphical Units}{units} [1043] Underfull \hbox (badness 1205) in paragraph at lines 9287--9289 []\T1/ptm/m/n/10 vectors con-tain-ing the co-or-di-nates of the ver-tices of th e poly-gon. See [1044] [1045] Overfull \hbox (25.98041pt too wide) in paragraph at lines 9406--9406 []\T1/pcr/m/n/9 arrows(res$x[nr-3], res$y[nr-3], res$x[nr], res$y[nr], code = 2, length = 0.1)[] [1046]) (./grid-pkg.tex Chapter 6. [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] Underfull \hbox (badness 4859) in paragraph at lines 635--638 []\T1/ptm/m/n/10 Modification of the view-port (should all be valid ar-gu-ments to the [1057] [1058] [1059] [1060] [1061] [1062] Overfull \hbox (31.3804pt too wide) in paragraph at lines 1029--1029 [] \T1/pcr/m/n/9 width=unit(1, "inches"), height=un it(1, "inches")))[] [1063] [1064] [1065] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1240--1240 [] \T1/pcr/m/n/9 vpList(vpStack(viewport(x=0.1, y=0.1, width=0.5 , height=0.5,[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1241--1241 [] \T1/pcr/m/n/9 just=c("left", "bottom" ), name="B"),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1242--1242 [] \T1/pcr/m/n/9 viewport(x=0.1, y=0.1, width=0.5 , height=0.5,[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1243--1243 [] \T1/pcr/m/n/9 just=c("left", "bottom" ), name="C"),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1244--1244 [] \T1/pcr/m/n/9 viewport(x=0.1, y=0.1, width=0.5 , height=0.5,[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1245--1245 [] \T1/pcr/m/n/9 just=c("left", "bottom" ), name="D")),[] [1066] [1067] [1068] [1069] Underfull \hbox (badness 3219) in paragraph at lines 1504--1507 []\T1/ptm/m/n/10 Both func-tions cre-ate a cir-cle grob (a graph-i-cal ob-ject de-scrib-ing a cir-cle), but only [1070] [1071] [1072] [1073] [1074] [1075] [1076] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1892--1892 [] \T1/pcr/m/n/9 do.call("grid.curve", c(list(x1=.25, y1=.25, x2=.75, y2=.75) , list(...)))[] [1077] [1078] [1079] Overfull \hbox (25.98041pt too wide) in paragraph at lines 2106--2106 []\T1/pcr/m/n/9 grid.rect(width=.4, height=.4, x=.25, y=.75, gp=gpar(fill="bla ck"), name="r1")[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2107--2107 []\T1/pcr/m/n/9 grid.rect(width=.4, height=.4, x=.5, y=.5, gp=gpar(fill="grey" ), name="r2")[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 2108--2108 []\T1/pcr/m/n/9 grid.rect(width=.4, height=.4, x=.75, y=.25, gp=gpar(fill="whi te"), name="r3")[] [1080] Underfull \hbox (badness 2961) in paragraph at lines 2143--2148 []\T1/ptm/m/n/10 The meth-ods for grob and gTree call the generic hook func-tio ns []\T1/pcr/m/n/10 preDrawDetails[]\T1/ptm/m/n/10 , [1081] Underfull \hbox (badness 4479) in paragraph at lines 2231--2234 []\T1/ptm/m/n/10 Both func-tions call []\T1/pcr/m/n/10 editDetails []\T1/ptm/m/ n/10 to al-low a grob to per-form cus-tom ac-tions and [1082] [1083] [1084] Underfull \hbox (badness 2894) in paragraph at lines 2438--2445 []\T1/ptm/m/n/10 Both func-tions cre-ate a frame grob (a graph-i-cal ob-ject de -scrib-ing a frame), but only [1085] [1086] [1087] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2594--2594 []\T1/pcr/m/n/10 getGrob(gTree, gPath, strict = FALSE, grep = FALSE, global = FALSE)[] [1088] Underfull \hbox (badness 1014) in paragraph at lines 2680--2685 []\T1/ptm/m/n/10 The jus-ti-fi-ca-tion of the glyphs rel-a-tive to the ([]\T1/p cr/m/n/10 x[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 ) lo-ca-tion. Can be [1089] Overfull \hbox (12.78088pt too wide) in paragraph at lines 2726--2726 []\T1/pcr/m/n/10 grid.grabExpr(expr, warn = 2, wrap = wrap.grobs, wrap.grobs = FALSE,[] [1090] [1091] Overfull \hbox (15.18042pt too wide) in paragraph at lines 2888--2888 [] \T1/pcr/m/n/9 children=gList(grob(name="child", vp ="vp1::vp2")),[] [1092] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2920--2920 [] \T1/pcr/m/n/10 default.units = "npc", gp=gpar(col = "grey"), vp = NULL)[] [1093] [1094] Underfull \hbox (badness 10000) in paragraph at lines 3103--3105 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1095] Underfull \hbox (badness 1077) in paragraph at lines 3120--3139 []\T1/ptm/m/n/10 Another pos-si-ble use of []\T1/pcr/m/n/10 grid.group() []\T1/ ptm/m/n/10 is to spec-ify both []\T1/pcr/m/n/10 src []\T1/ptm/m/n/10 and []\T1/ pcr/m/n/10 dst []\T1/ptm/m/n/10 and com-bine Underfull \hbox (badness 1622) in paragraph at lines 3120--3139 []\T1/ptm/m/n/10 is only drawn where it is NOT over-lapped by []\T1/pcr/m/n/10 src[]\T1/ptm/m/n/10 . The fol-low-ing (ex-tended) Porter- Underfull \hbox (badness 2057) in paragraph at lines 3120--3139 []\T1/pcr/m/n/10 "multiply"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "screen"[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 "overlay"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "darke n"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lighten"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n /10 "color.dodge"[]\T1/ptm/m/n/10 , [1096] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3192--3192 [] \T1/pcr/m/n/9 mask <- as.mask(rectGrob(gp=gpar(col=NA, fill="grey50")), ty pe="luminance")[] [1097] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3308--3308 [] \T1/pcr/m/n/9 pushViewport(viewport(layout=grid.layout(1, 1, widths=unit(1 , "inches"),[] [1098] [1099] [1100] [1101] [1102] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3623--3623 [] \T1/pcr/m/n/9 children=vpList(viewpor t(name="vp2"))))[] [1103] [1104] Overfull \hbox (52.98038pt too wide) in paragraph at lines 3719--3719 []\T1/pcr/m/n/9 pushViewport(viewport(x=0, y=0, width=0.25, height=0.25, just= c("left", "bottom")))[] Underfull \hbox (badness 2799) in paragraph at lines 3756--3762 []\T1/ptm/m/n/10 There are two hooks called []\T1/pcr/m/n/10 "before.grid.newpa ge" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "grid.newpage" []\T1/ptm/m/n/10 (see [1105] [1106] Overfull \hbox (6.78088pt too wide) in paragraph at lines 3848--3848 [] \T1/pcr/m/n/10 force.width = FALSE, force.height = FALSE, border = NULL,[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 3855--3855 [] \T1/pcr/m/n/10 force.width = FALSE, force.height = FALSE, border = NULL,[] [1107] [1108] [1109] Overfull \hbox (9.78043pt too wide) in paragraph at lines 4057--4057 [] \T1/pcr/m/n/9 "Nested rectangles, outer clockwise, inner ant i-clockwise")[] [1110] Overfull \hbox (25.98041pt too wide) in paragraph at lines 4072--4072 [] \T1/pcr/m/n/9 "Overlapping rectangles, one clockwise, other anti-clockwise")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 4093--4093 []\T1/pcr/m/n/9 # Not specifying pathId will treat all points as part of the s ame path, thus[] [1111] [1112] [1113] [1114] [1115] [1116] [1117] [1118] [1119] [1120] [1121] [1122] Underfull \hbox (badness 1067) in paragraph at lines 4843--4846 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1123] [1124] [1125] [1126] Overfull \hbox (31.3804pt too wide) in paragraph at lines 5059--5059 [] \T1/pcr/m/n/9 width=unit(1, "inches"), height=un it(1, "inches")))[] [1127] [1128] Underfull \hbox (badness 7256) in paragraph at lines 5194--5196 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1129] Overfull \hbox (69.18036pt too wide) in paragraph at lines 5261--5261 []\T1/pcr/m/n/9 grid.text(quote(frac(e^{-x^2/2}, sqrt(2*pi))), x=x, y=y, rot=s tats::runif(20, -45,45),[] [1130] [1131] [1132] [1133] [1134] [1135] Underfull \hbox (badness 2726) in paragraph at lines 5648--5652 []\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 gridCoords []\T1/ptm/m/n/10 a nu-meric ve c-tor. For []\T1/pcr/m/n/10 gridGrobCoords []\T1/ptm/m/n/10 a list Underfull \hbox (badness 1231) in paragraph at lines 5648--5652 \T1/ptm/m/n/10 of []\T1/pcr/m/n/10 "GridCoords" []\T1/ptm/m/n/10 ob-jects. For []\T1/pcr/m/n/10 gridGTreeCoords []\T1/ptm/m/n/10 a list of ei-ther [1136] Underfull \hbox (badness 2080) in paragraph at lines 5730--5735 []\T1/ptm/m/n/10 Either a []\T1/pcr/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 ob -ject (a list of lists with com-po-nents []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 an d []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 ) or a [1137] [1138] [1139] Underfull \hbox (badness 10000) in paragraph at lines 5910--5912 []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 grid.legend()[]\T1/ptm/m/n/10 : all the a r-gu-ments above are passed to [1140] [1141] [1142] [1143] [1144] [1145] [1146] [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7009--7009 []\T1/pcr/m/n/9 unitType(min(unit(1, "in"), unit(1, "npc") + unit(1, "mm")), r ecurse=TRUE)[] [1157] [1158] Overfull \hbox (54.78088pt too wide) in paragraph at lines 7129--7129 []\T1/pcr/m/n/10 viewportTransform(group, shear=groupShear(), flip=groupFlip() , device=TRUE) [1159] Underfull \hbox (badness 1867) in paragraph at lines 7231--7233 []\T1/ptm/m/n/10 This func-tion can be used to gen-er-ate a view-port path for use in []\T1/pcr/m/n/10 downViewport []\T1/ptm/m/n/10 or [1160] Underfull \hbox (badness 10000) in paragraph at lines 7268--7274 [][][]\T1/pcr/m/n/10 viewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 push Viewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 popViewport[][][][]\T1/pt m/m/n/10 , [][][]\T1/pcr/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/ pcr/m/n/10 seekViewport[][][][]\T1/ptm/m/n/10 , [1161] [1162] [1163] Underfull \vbox (badness 10000) has occurred while \output is active [1164] [1165] [1166] Overfull \hbox (25.98041pt too wide) in paragraph at lines 7604--7604 []\T1/pcr/m/n/9 invisible(lapply(trace, function(t) grid.lines(t$x, t$y, gp=gp ar(col="red"))))[] [1167]) (./methods-pkg.tex [1168] Chapter 7. [1169] [1170] Underfull \hbox (badness 1688) in paragraph at lines 166--171 []\T1/ptm/m/n/10 func-tion. See that doc-u-men-ta-tion also for de-tails of how co-erce meth-ods work. Use [1171] [1172] [1173] Underfull \hbox (badness 1348) in paragraph at lines 392--395 [][][]\T1/pcr/m/n/10 GroupGenericFunctions[][][] []\T1/ptm/m/n/10 for other in- for-ma-tion about group generic func-tions; [][]Meth- [1174] [1175] Overfull \hbox (15.18042pt too wide) in paragraph at lines 558--558 []\T1/pcr/m/n/9 ## vector. The next method will always be the default, usuall y a primitive.[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 568--568 []\T1/pcr/m/n/9 ## For arithmetic and one rnum with anything, callNextMethod w ith no arguments[] [1176] Overfull \hbox (4.38043pt too wide) in paragraph at lines 619--619 []\T1/pcr/m/n/9 ## Simple examples to illustrate callNextMethod with and witho ut arguments[] Underfull \vbox (badness 10000) has occurred while \output is active [1177] Overfull \hbox (25.98041pt too wide) in paragraph at lines 637--637 []\T1/pcr/m/n/9 ## call f() with 2 arguments: callNextMethod passes both to th e default method[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 640--640 []\T1/pcr/m/n/9 ## call f() with 1 argument: the default "B0" is not passed b y callNextMethod[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 657--657 []\T1/pcr/m/n/9 ## uses the class of the *argument* to consistently select the "B0" method[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 672--672 []\T1/pcr/m/n/9 ## Although the argument here is numeric, it\TS1/pcr/m/n/9 '\T 1/pcr/m/n/9 s still the "B0" method that\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s called[ ] Underfull \vbox (badness 10000) has occurred while \output is active [1178] [1179] [1180] [1181] [1182] [1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] [1191] [1192] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1792--1792 []\T1/pcr/m/n/9 stopifnot(identical(cc(1:10, 1+1i), sum(1:10, 1+1i))) # the "N umber" method[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1794--1794 []\T1/pcr/m/n/9 stopifnot(identical(cc(1:10, 1+1i, TRUE), c(1:10, 1+1i, TRUE)) ) # the default[] [1193] [1194] Underfull \hbox (badness 10000) in paragraph at lines 1979--1984 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/pcr/m/n/10 insertSource []\T1/ptm/m/n/ 10 can be an ob-ject of class [1195] [1196] [1197] Underfull \hbox (badness 1478) in paragraph at lines 2211--2216 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/pcr/m/n/10 where = [1198] [1199] Underfull \hbox (badness 10000) in paragraph at lines 2325--2329 []\T1/ptm/m/n/10 To see the ac-tual ta-ble (an [][][]\T1/pcr/m/n/10 environment [][][][]\T1/ptm/m/n/10 ) used for meth-ods dis-patch, call Overfull \hbox (78.78088pt too wide) in paragraph at lines 2359--2359 []\T1/pcr/m/n/10 getMethods(f, where, table = FALSE) # deprecated -> use getMe thodsForDispatch()[] [1200] [1201] [1202] Underfull \hbox (badness 3792) in paragraph at lines 2572--2575 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/pcr/m/n/10 setGeneric[][][] []\ T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c re-ate ob-jects of class Underfull \hbox (badness 1194) in paragraph at lines 2603--2607 []\T1/ptm/m/n/10 Object of class []\T1/pcr/m/n/10 "optionalMethod" []\T1/ptm/m/ n/10 (a union of classes []\T1/pcr/m/n/10 "function" []\T1/ptm/m/n/10 and [1203] Overfull \hbox (24.78088pt too wide) in paragraph at lines 2659--2659 []\T1/pcr/m/n/10 removeMethods(f, where = topenv(parent.frame()), all = missin g(where))[] [1204] [1205] [1206] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2882--2882 []\T1/pcr/m/n/9 ## get the function "myFun" -- throw an error if 0 or > 1 vers ions visible:[] [1207] [1208] [1209] [1210] [1211] [1212] [1213] Underfull \hbox (badness 10000) in paragraph at lines 3405--3410 []\T1/ptm/m/n/10 Function []\T1/pcr/m/n/10 implicitGeneric() []\T1/ptm/m/n/10 r e-turns the im-plicit generic ver-sion, Underfull \hbox (badness 6268) in paragraph at lines 3405--3410 []\T1/pcr/m/n/10 setGenericImplicit() []\T1/ptm/m/n/10 turns a generic im-plici t, []\T1/pcr/m/n/10 prohibitGeneric() []\T1/ptm/m/n/10 pre-vents [1214] [1215] Underfull \hbox (badness 10000) in paragraph at lines 3533--3537 []\T1/ptm/m/n/10 For a class (or class def-i-ni-tion, see [][][]\T1/pcr/m/n/10 getClass[][][] []\T1/ptm/m/n/10 and the de-scrip-tion of class [1216] Overfull \hbox (14.78088pt too wide) in paragraph at lines 3642--3651 [] [1217] [1218] Underfull \hbox (badness 10000) in paragraph at lines 3762--3763 [] \T1/pcr/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit ude = Underfull \hbox (badness 10000) in paragraph at lines 3809--3810 []\T1/pcr/m/n/10 setMethod("plot", c("Pos", "missing"), function(x, y, ...) { [1219] Underfull \hbox (badness 10000) in paragraph at lines 3846--3847 []\T1/pcr/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character") , Underfull \hbox (badness 6157) in paragraph at lines 3908--3912 []\T1/ptm/m/n/10 A call to [][][]\T1/pcr/m/n/10 selectSuperClasses[][][](cl) [] \T1/ptm/m/n/10 re-turns a list of su-per-classes, sim-i-larly to [1220] [1221] [1222] [1223] [1224] [1225] Overfull \hbox (18.78088pt too wide) in paragraph at lines 4313--4313 []\T1/pcr/m/n/10 makeClassRepresentation(name, slots=list(), superClasses=char acter(), Overfull \hbox (0.78088pt too wide) in paragraph at lines 4314--4314 [] \T1/pcr/m/n/10 prototype=NULL, package, validity, ac cess,[] [1226] Overfull \hbox (0.78088pt too wide) in paragraph at lines 4371--4371 []\T1/pcr/m/n/10 method.skeleton(generic, signature, file, external = FALSE, w here) [1227] [1228] Underfull \hbox (badness 2126) in paragraph at lines 4516--4524 []\T1/ptm/m/n/10 For ad-di-tional in-for-ma-tion see doc-u-men-ta-tion for the im-por-tant steps: ([][][]\T1/pcr/m/n/10 setMethod[][][]()[]\T1/ptm/m/n/10 , [1229] [1230] Underfull \vbox (badness 5681) has occurred while \output is active [1231] Underfull \hbox (badness 10000) in paragraph at lines 4753--4762 []\T1/ptm/m/n/10 In prin-ci-ple, a generic func-tion could be any func-tion tha t eval-u-ates a call to [1232] [1233] [1234] [1235] [1236] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5137--5137 []\T1/pcr/m/n/9 f3 <- function(x)UseMethod("f3") # an S3 generic to illustrate inheritance[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 5165--5165 []\T1/pcr/m/n/9 stopifnot(identical(abs(y), abs(x))) # (version 2.9.0 or earli er fails here)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5179--5179 []\T1/pcr/m/n/9 ## The S3 method for classA and the closest inherited S3 metho d for classB[] Underfull \vbox (badness 10000) has occurred while \output is active [1237] [1238] Underfull \hbox (badness 10000) in paragraph at lines 5297--5298 []\T1/pcr/m/n/10 unique.uncased <- function(x, incomparables = FALSE, ...) [1239] [1240] Underfull \hbox (badness 3803) in paragraph at lines 5452--5454 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1241] [1242] [1243] Underfull \hbox (badness 1087) in paragraph at lines 5683--5688 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1244] [1245] [1246] [1247] [1248] [1249] Underfull \hbox (badness 10000) in paragraph at lines 6149--6165 []\T1/ptm/m/n/10 The de-fault method for []\T1/pcr/m/n/10 $initialize() []\T1/p tm/m/n/10 is equiv-a-lent to in-vok-ing the method [1250] [1251] Underfull \hbox (badness 1248) in paragraph at lines 6282--6286 []\T1/ptm/m/n/10 Typically, a spe-cial-ized []\T1/pcr/m/n/10 $initialize() []\T 1/ptm/m/n/10 method car-ries out its own com-pu-ta-tions, Underfull \hbox (badness 1960) in paragraph at lines 6282--6286 \T1/ptm/m/n/10 then in-vokes []\T1/pcr/m/n/10 $initFields() []\T1/ptm/m/n/10 to per-form stan-dard ini-tial-iza-tion, as shown in the [1252] Underfull \hbox (badness 4647) in paragraph at lines 6437--6439 []\T1/ptm/m/n/10 This method is equiv-a-lent to call-ing the gen-er-a-tor func- tion re-turned by [1253] [1254] Underfull \hbox (badness 2875) in paragraph at lines 6586--6595 []\T1/ptm/m/n/10 Reference classes can have va-lid-ity meth-ods in the same sen se as any S4 class (see Underfull \hbox (badness 1436) in paragraph at lines 6586--6595 [][][]\T1/pcr/m/n/10 setValidity[][][][]\T1/ptm/m/n/10 ). Such meth-ods are of- ten a good idea; they will be called by call-ing [1255] Underfull \vbox (badness 10000) has occurred while \output is active [1256] [1257] [1258]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.S4}) has been already used, duplicate ignored \relax l.6911 \aliasA{S4}{S3Part}{S4} [1259] Overfull \hbox (66.78088pt too wide) in paragraph at lines 6947--6947 []\T1/pcr/m/n/10 ## Create a new object from the class or use the replacement version of as().[] [1260] [1261] Overfull \hbox (25.98041pt too wide) in paragraph at lines 7138--7138 []\T1/pcr/m/n/9 fit <- lm(sepal ~ Petal.Length + Petal.Width + Species, data = datasets::iris)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 7142--7142 []\T1/pcr/m/n/9 myReg <- setClass("myReg", slots = c(title = "character"), con tains = "mlm")[] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex}) has been already used, duplicate ignored \relax l.7167 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7169 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7170 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.matrixOps}) has been already used, duplicate i gnored \relax l.7172 ...sA{matrixOps}{S4groupGeneric}{matrixOps} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7173 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7174 \aliasA{Summary}{S4groupGeneric}{Summary} [1262] Underfull \hbox (badness 3907) in paragraph at lines 7230--7235 []\T1/ptm/m/n/10 There are also S3 groups []\T1/pcr/m/n/10 Math[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Ops[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Summary[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 Complex []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 matrixOps[ ]\T1/ptm/m/n/10 , see Underfull \hbox (badness 2050) in paragraph at lines 7236--7240 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1263] Underfull \hbox (badness 6708) in paragraph at lines 7249--7261 []\T1/pcr/m/n/10 "abs"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sign"[]\T1/ptm/m/n/1 0 , []\T1/pcr/m/n/10 "sqrt"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ceiling"[]\T1/p tm/m/n/10 , []\T1/pcr/m/n/10 "floor"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "trunc" []\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cummax"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 2012) in paragraph at lines 7249--7261 []\T1/pcr/m/n/10 "acosh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "asin"[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 "asinh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "atan"[]\T1/p tm/m/n/10 , []\T1/pcr/m/n/10 "atanh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "exp"[] \T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "expm1"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "c os"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3209) in paragraph at lines 7249--7261 []\T1/pcr/m/n/10 "cosh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cospi"[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 "sin"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sinh"[]\T1/ptm /m/n/10 , []\T1/pcr/m/n/10 "sinpi"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tan"[]\T 1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tanh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tanp i"[]\T1/ptm/m/n/10 , Overfull \hbox (58.38037pt too wide) in paragraph at lines 7323--7323 []\T1/pcr/m/n/9 selectMethod("Re", signature = "testComplex") # shows Generic: .. "Re" & .."Complex"[] [1264] [1265] Underfull \hbox (badness 1694) in paragraph at lines 7412--7414 []\T1/ptm/m/n/10 name of the class or (more ef-fi-ciently) the class def-i-ni-t ion ob-ject (see Underfull \hbox (badness 10000) in paragraph at lines 7436--7439 []\T1/ptm/m/n/10 The typ-i-cal user level func-tion is []\T1/pcr/m/n/10 selectS uperClasses() []\T1/ptm/m/n/10 which calls [1266] Overfull \hbox (20.58041pt too wide) in paragraph at lines 7457--7457 []\T1/pcr/m/n/9 selectSuperClasses("C", dropVirtual=TRUE, directOnly=FALSE)# d itto w/o "Root"[] [1267] [1268] [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] Overfull \hbox (0.78088pt too wide) in paragraph at lines 8571--8571 []\T1/pcr/m/n/10 setGroupGeneric(name, def= , group=list(), valueClass=charact er(), [1280] [1281] Overfull \hbox (6.78088pt too wide) in paragraph at lines 8646--8646 [] \T1/pcr/m/n/10 by = character(), where = topenv(parent.frame()), class Def =,[] [1282] [1283] [1284] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8908--8908 []\T1/pcr/m/n/9 ## "trackMultiCurve", by making the y, smooth slots into 1-col umn matrices[] [1285] [1286] [1287] Overfull \hbox (4.38043pt too wide) in paragraph at lines 9115--9115 [] \T1/pcr/m/n/9 setLoadAction(function(ns) assign("myCount", 0, envir = ns), "setCount")[] [1288] [1289] Underfull \vbox (badness 2302) has occurred while \output is active [1290] Overfull \hbox (15.18042pt too wide) in paragraph at lines 9377--9377 []\T1/pcr/m/n/9 ## Using a short form for the signature, which matches like fo rmal arguments[] [1291] [1292] [1293] [1294] Overfull \hbox (9.78043pt too wide) in paragraph at lines 9685--9685 []\T1/pcr/m/n/9 ## Define a new generic function to compute the residual degre es of freedom[] [1295] Overfull \hbox (15.18042pt too wide) in paragraph at lines 9795--9795 []\T1/pcr/m/n/9 ## Not run: [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,1 0] [,11] [,12][] [1296] Overfull \hbox (15.18042pt too wide) in paragraph at lines 9806--9806 []\T1/pcr/m/n/9 ## Not run: [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,1 0] [,11] [,12][] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] Underfull \hbox (badness 4193) in paragraph at lines 10440--10443 []\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance in R [][]$\T1/pcr/m/n/10 https : / / johnmchambers . su . [1305] Underfull \hbox (badness 10000) in paragraph at lines 10510--10512 []\T1/ptm/m/n/10 Object of the orig-i-nal class; e.g., []\T1/pcr/m/n/10 "functi on" []\T1/ptm/m/n/10 for class Underfull \hbox (badness 1852) in paragraph at lines 10518--10522 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., Underfull \hbox (badness 1681) in paragraph at lines 10518--10522 []\T1/pcr/m/n/10 "functionWithTrace" []\T1/ptm/m/n/10 ex-tends []\T1/pcr/m/n/10 "function"[]\T1/ptm/m/n/10 . Each of the spe-cific classes ex-tends [1306] [1307] [1308] [1309]) (./parallel-pkg.tex [1310] Chapter 8. Underfull \hbox (badness 2418) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/p cr/m/n/10 "L\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][] RNG[][][]: see [1311] Underfull \hbox (badness 4242) in paragraph at lines 96--98 []\T1/ptm/m/n/10 a vec-tor for []\T1/pcr/m/n/10 clusterApply []\T1/ptm/m/n/10 a nd []\T1/pcr/m/n/10 clusterApplyLB[]\T1/ptm/m/n/10 , a ma-trix for [1312] [1313] Underfull \hbox (badness 1024) in paragraph at lines 213--216 []\T1/ptm/m/n/10 Two ex-cep-tions: []\T1/pcr/m/n/10 parLapply []\T1/ptm/m/n/10 has ar-gu-ment []\T1/pcr/m/n/10 X []\T1/ptm/m/n/10 not []\T1/pcr/m/n/10 x []\T1 /ptm/m/n/10 for con-sis-tency with [][][]\T1/pcr/m/n/10 lapply[][][][]\T1/ptm/m /n/10 , and [1314] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1315] [1316] Underfull \hbox (badness 10000) in paragraph at lines 447--449 []\T1/ptm/m/n/10 Character vec-tor of ad-di-tional ar-gu-ments for []\T1/pcr/m/ n/10 Rscript []\T1/ptm/m/n/10 such as [1317] [1318] [1319] [1320] [1321] Underfull \hbox (badness 1917) in paragraph at lines 795--804 []\T1/pcr/m/n/10 mcfork []\T1/ptm/m/n/10 re-turns an ob-ject of the class []\T1 /pcr/m/n/10 "childProcess" []\T1/ptm/m/n/10 to the mas-ter and of class Underfull \hbox (badness 1178) in paragraph at lines 795--804 []\T1/pcr/m/n/10 "masterProcess" []\T1/ptm/m/n/10 to the child: both the classe s in-herit from class []\T1/pcr/m/n/10 "process"[]\T1/ptm/m/n/10 . If [1322] [1323] Overfull \hbox (60.78088pt too wide) in paragraph at lines 888--888 [] \T1/pcr/m/n/10 mc.cleanup = TRUE, mc.allow.recursive = TRUE, affini ty.list = NULL)[] [1324] [1325] [1326] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1079--1079 []\T1/pcr/m/n/9 mclapply(list(A, A, A), first, mc.preschedule = FALSE, affinit y.list = affL)[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 1083--1083 []\T1/pcr/m/n/9 # To optimize the overall execution time elements of X are sch eduled to suitable CPUs[] [1327] Underfull \hbox (badness 5388) in paragraph at lines 1198--1203 []\T1/pcr/m/n/10 mcparallel []\T1/ptm/m/n/10 re-turns an ob-ject of the class [ ]\T1/pcr/m/n/10 "parallelJob" []\T1/ptm/m/n/10 which in-her-its from [1328] Underfull \hbox (badness 10000) in paragraph at lines 1222--1230 []\T1/ptm/m/n/10 The be-haviour with []\T1/pcr/m/n/10 mc.set.seed = TRUE []\T1/ ptm/m/n/10 is dif-fer-ent only if Overfull \hbox (9.78043pt too wide) in paragraph at lines 1258--1258 []\T1/pcr/m/n/9 mccollect(p, wait = FALSE, 10) # will retrieve the result (sin ce it\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s fast)[] [1329] [1330] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1373--1373 [] \T1/pcr/m/n/9 as.integer(runif(N, 1, 12)), as.integer(runif (N, 1, 28)))[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1387--1387 []\T1/pcr/m/n/9 system.time(c <- unlist(mclapply(dates, as.POSIXct, format = "%Y-%m-%d")))[] [1331] Underfull \hbox (badness 1577) in paragraph at lines 1416--1419 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/pcr/m/n/10 .Random.seed []\T1/ptm/m/n/10 when the Underfull \hbox (badness 3375) in paragraph at lines 1463--1465 []\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 nextRNGStream []\T1/ptm/m/n/10 and []\T1/ pcr/m/n/10 nextRNGSubStream[]\T1/ptm/m/n/10 , a value which can be as-signed to [1332] [1333]) (./splines-pkg.tex [1334] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/pcr/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] Overfull \hbox (4.38043pt too wide) in paragraph at lines 508--508 []\T1/pcr/m/n/9 ispl <- polySpline(interpSpline( weight ~ height, women, bSpl ine = TRUE))[] [1343] Underfull \hbox (badness 1043) in paragraph at lines 609--611 []\T1/ptm/m/n/10 An in-te-ger be-tween 0 and []\T1/pcr/m/n/10 splineOrder(objec t) - 1 []\T1/ptm/m/n/10 spec-i-fy-ing the [1344] [1345] Overfull \hbox (25.98041pt too wide) in paragraph at lines 723--723 []\T1/pcr/m/n/9 Matrix::drop0(zapsmall(6*splineDesign(knots = 1:40, x = 4:37, sparse = TRUE)))[] [1346] [1347] [1348]) (./stats-pkg.tex Chapter 10. [1349] Underfull \hbox (badness 1077) in paragraph at lines 71--74 []\T1/pcr/m/n/10 .MFclass() []\T1/ptm/m/n/10 re-turns a char-ac-ter string, one of []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ordered"[]\T 1/ptm/m/n/10 , []\T1/pcr/m/n/10 "factor"[]\T1/ptm/m/n/10 , Overfull \hbox (69.18036pt too wide) in paragraph at lines 91--91 []\T1/pcr/m/n/9 (xl <- .getXlevels(terms(mf), mf)) # a list with one entry " $ Species" with 3 levels:[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 94--94 [] \T1/pcr/m/n/9 identical(.getXlevels(terms(mc), mc), xl[0]) # a empty named list, as no factors[] [1350] [1351] [1352] [1353] [1354] Overfull \hbox (20.58041pt too wide) in paragraph at lines 445--445 []\T1/pcr/m/n/9 add1(glm.D93, scope = ~outcome*treatment, test = "Rao") ## Pea rson Chi-square[] [1355] Overfull \hbox (6.78088pt too wide) in paragraph at lines 468--468 []\T1/pcr/m/n/10 addmargins(A, margin = seq_along(dim(A)), FUN = sum, quiet = FALSE) [1356] [1357] [1358] [1359] [1360] [1361] Underfull \hbox (badness 1024) in paragraph at lines 901--903 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/pcr/m/n/10 l m []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] Overfull \hbox (12.78088pt too wide) in paragraph at lines 1645--1645 [] \T1/pcr/m/n/10 yleft, yright, rule = 1, f = 0, ties = mean, na.rm = TRUE)[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 1648--1648 [] \T1/pcr/m/n/10 yleft, yright, rule = 1, f = 0, ties = mean, na.rm = TRUE)[] [1374] [1375] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1795--1795 [] \T1/pcr/m/n/9 approx(xn, yn, xout=xout, method=M, rule=R, n a.rm=na.)$y),[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 1807--1807 []\T1/pcr/m/n/9 (amy <- approx(x, y, xout = x)$y) # warning, can be avoided by specifying \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ties=\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 :[ ] [1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2826--2826 []\T1/pcr/m/n/10 ARMAacf(ar = numeric(), ma = numeric(), lag.max = r, pacf = F ALSE) [1391] [1392] [1393] [1394] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3081--3081 []\T1/pcr/m/n/9 lines(ave(breaks, wool, tension, FUN = median), type = "s", co l = "green")[] [1395] [1396] [1397] Underfull \hbox (badness 10000) in paragraph at lines 3295--3297 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Bartlett test of homo geneity of [1398] Overfull \hbox (6.78088pt too wide) in paragraph at lines 3344--3344 []\T1/pcr/m/n/10 pbeta(q, shape1, shape2, ncp = 0, lower.tail = TRUE, log.p = FALSE)[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 3345--3345 []\T1/pcr/m/n/10 qbeta(p, shape1, shape2, ncp = 0, lower.tail = TRUE, log.p = FALSE)[] [1399] [1400] [1401] [1402] Package amsmath Warning: Foreign command \atopwithdelims; (amsmath) \frac or \genfrac should be used instead (amsmath) on input line 3684. [1403] Overfull \hbox (9.78043pt too wide) in paragraph at lines 3750--3750 []\T1/pcr/m/n/9 plot (k, dbinom(k, n, pi/10, log = TRUE), type = "l", ylab = " log density",[] [1404] [1405] [1406] [1407] Overfull \hbox (12.78088pt too wide) in paragraph at lines 4029--4029 []\T1/pcr/m/n/10 Box.test(x, lag = 1, type = c("Box-Pierce", "Ljung-Box"), fit df = 0) [1408] [1409] [1410] [1411] [1412] Overfull \hbox (18.78088pt too wide) in paragraph at lines 4318--4318 []\T1/pcr/m/n/10 pcauchy(q, location = 0, scale = 1, lower.tail = TRUE, log.p = FALSE)[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 4319--4319 []\T1/pcr/m/n/10 qcauchy(p, location = 0, scale = 1, lower.tail = TRUE, log.p = FALSE)[] [1413] [1414] [1415] [1416] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4560--4560 []\T1/pcr/m/n/9 chisq.test(x, p = p) # maybe doubtful , but is ok![] [1417] [1418] Overfull \hbox (20.58041pt too wide) in paragraph at lines 4735--4735 [] \T1/pcr/m/n/9 plot(pp, sort(pchisq(rr <- rchisq(n, df = df, ncp = L), df = df, ncp = L)),[] [1419] [1420] Underfull \hbox (badness 3989) in paragraph at lines 4830--4837 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1421] [1422] [1423] Overfull \hbox (66.78088pt too wide) in paragraph at lines 5058--5058 []\T1/pcr/m/n/10 confint(object, parm, level = 0.95, trace = FALSE, test=c("LR T", "Rao"), ...)[] [1424] [1425] Overfull \hbox (25.98041pt too wide) in paragraph at lines 5232--5232 []\T1/pcr/m/n/9 constrOptim(c(-1.2,0.9), fr, grr, ui = rbind(c(-1,0), c(0,-1)) , ci = c(-1,-1))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5234--5234 []\T1/pcr/m/n/9 constrOptim(c(.5,0), fr, grr, ui = rbind(c(-1,0), c(1,-1)), ci = c(-0.9,0.1))[] [1426] [1427] [1428] [1429] Overfull \hbox (9.78043pt too wide) in paragraph at lines 5456--5456 []\T1/pcr/m/n/9 ## using sparse contrasts: % useful, once model.matrix() works with these :[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 5474--5474 []\T1/pcr/m/n/10 convolve(x, y, conj = TRUE, type = c("circular", "open", "fil ter")) [1430] [1431] [1432] Underfull \hbox (badness 1436) in paragraph at lines 5684--5689 []\T1/ptm/m/n/10 an op-tional char-ac-ter string giv-ing a method for com-put-i ng co-vari-ances Underfull \hbox (badness 1377) in paragraph at lines 5684--5689 \T1/ptm/m/n/10 in the pres-ence of miss-ing val-ues. This must be (an ab-bre-vi -a-tion of) Underfull \hbox (badness 1448) in paragraph at lines 5684--5689 \T1/ptm/m/n/10 one of the strings []\T1/pcr/m/n/10 "everything"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "all.obs"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "complete.obs" []\T1/ptm/m/n/10 , [1433] [1434] Underfull \vbox (badness 10000) has occurred while \output is active [1435] Overfull \hbox (0.78088pt too wide) in paragraph at lines 5885--5885 [] \T1/pcr/m/n/10 exact = NULL, conf.level = 0.95, continuity = FALSE, ...)[] [1436] [1437] Overfull \hbox (6.78088pt too wide) in paragraph at lines 6052--6052 []\T1/pcr/m/n/10 cov.wt(x, wt = rep(1/nrow(x), nrow(x)), cor = FALSE, center = TRUE, [1438] [1439] [1440] Overfull \hbox (6.78088pt too wide) in paragraph at lines 6236--6236 []\T1/pcr/m/n/10 decompose(x, type = c("additive", "multiplicative"), filter = NULL) [1441] [1442] Overfull \hbox (84.78088pt too wide) in paragraph at lines 6345--6345 []\T1/pcr/m/n/10 reformulate(termlabels, response = NULL, intercept = TRUE, en v = parent.frame())[] Underfull \hbox (badness 10000) in paragraph at lines 6364--6369 []\T1/ptm/m/n/10 a nu-meric vec-tor in-dex-ing []\T1/pcr/m/n/10 labels(termobj) []\T1/ptm/m/n/10 (that is, the [1443] [1444] [1445] [1446] Underfull \hbox (badness 5954) in paragraph at lines 6614--6616 []\T1/ptm/m/n/10 logical in-di-cat-ing if a box around the plot should be drawn , see [1447] Underfull \hbox (badness 2503) in paragraph at lines 6695--6698 []\T1/ptm/m/n/10 Objects of class []\T1/pcr/m/n/10 "hclust" []\T1/ptm/m/n/10 ca n be con-verted to class []\T1/pcr/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 5563) in paragraph at lines 6699--6701 []\T1/pcr/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g ram []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also Underfull \hbox (badness 1655) in paragraph at lines 6702--6707 \T1/ptm/m/n/10 has []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 y [ ]\T1/ptm/m/n/10 (and op-tional fur-ther ar-gu-ments) as branches. Note that be- fore \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.1.2, [1448] Underfull \hbox (badness 7238) in paragraph at lines 6738--6741 [][][]\T1/pcr/m/n/10 dendrapply[][][] []\T1/ptm/m/n/10 for ap-ply-ing a func-ti on to \T1/ptm/m/it/10 each \T1/ptm/m/n/10 node. [][][]\T1/pcr/m/n/10 order.dend rogram[][][] []\T1/ptm/m/n/10 and Overfull \hbox (4.38043pt too wide) in paragraph at lines 6750--6750 []\T1/pcr/m/n/9 str(dend1, max.level = 2, last.str = "\TS1/pcr/m/n/9 '\T1/pcr /m/n/9 ") # only the first two sub-levels[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6773--6773 []\T1/pcr/m/n/9 plot(dend2$lower[[3]], nodePar = list(col = 4), horiz = TRUE, type = "tr")[] [1449] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6788--6788 []\T1/pcr/m/n/9 ## merge() all parts back (using default \TS1/pcr/m/n/9 '\T1/p cr/m/n/9 height\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 instead of original one):[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6803--6803 []\T1/pcr/m/n/9 plot(d3, nodePar= nP, edgePar = list(col = "gray", lwd = 2), h oriz = TRUE)[] [1450] [1451] [1452] [1453] Overfull \hbox (25.98041pt too wide) in paragraph at lines 7088--7088 []\T1/pcr/m/n/9 abline(h = 1/1022, v = range(x), lty=2); axis(2, at=1/1022, "1 /(2n-2)", las=1)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7093--7093 [] \T1/pcr/m/n/9 function(k) density(kernel = k, give.Rker n = TRUE))))[] [1454] [1455] [1456] [1457] [1458] [1459] Underfull \hbox (badness 10000) in paragraph at lines 7493--7497 []\T1/pcr/m/n/10 "maximum"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "manhattan"[]\T1/ ptm/m/n/10 , []\T1/pcr/m/n/10 "canberra"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "bi nary" []\T1/ptm/m/n/10 or [1460] Underfull \hbox (badness 6493) in paragraph at lines 7595--7598 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from []\T1/ pcr/m/n/10 dist()[]\T1/ptm/m/n/10 , the [1461] [1462] Underfull \hbox (badness 10000) in paragraph at lines 7732--7735 []\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/pcr/m/n/10 ht tps : / / CRAN . R-[]project . org / view = [1463] [1464] [1465] [1466] [1467] [1468] [1469] Underfull \hbox (badness 10000) in paragraph at lines 8144--8149 []\T1/ptm/m/n/10 Each row of the re-sult-ing ma-trix con-sists of se-quences [] \T1/pcr/m/n/10 x[t][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 x[t-1][]\T1/ptm/m/n/10 , ..., [1470] [1471] [1472] [1473] [1474] Underfull \hbox (badness 1107) in paragraph at lines 8472--8475 []\T1/ptm/m/n/10 the [][][]\T1/pcr/m/n/10 na.action[][][] []\T1/ptm/m/n/10 to b e used if []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 is used as a for-mula, in which c ase [1475] [1476] [1477] [1478] [1479] [1480] [1481] Overfull \hbox (15.18042pt too wide) in paragraph at lines 8970--8970 []\T1/pcr/m/n/9 glm.qD93 <- glm(counts ~ outcome + treatment, d.AD, family = q uasipoisson())[] Underfull \vbox (badness 10000) has occurred while \output is active [1482] Overfull \hbox (31.3804pt too wide) in paragraph at lines 9015--9015 []\T1/pcr/m/n/9 ## Not run: glm(y ~ x, family = quasi(variance = "mu^3", link = "log")) # fails[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 9018--9018 []\T1/pcr/m/n/9 glm(y ~ x, family = quasi(variance = "mu(1-mu)", link = "logit "), start = c(0,1))[] [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] Overfull \hbox (15.18042pt too wide) in paragraph at lines 9591--9591 [] \T1/pcr/m/n/9 dimnames = list(income = c("< 15k", "15-25k", "25-4 0k", "> 40k"),[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 9592--9592 [] \T1/pcr/m/n/9 satisfaction = c("VeryD", "LittleD", "Mod erateS", "VeryS")))[] [1491] [1492] [1493] Underfull \hbox (badness 7291) in paragraph at lines 9772--9774 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Fligner-Killeen test of homogeneity of [1494] [1495] [1496] [1497] [1498] [1499] [1500] Underfull \hbox (badness 6944) in paragraph at lines 10265--10271 [][][]\T1/pcr/m/n/10 ftable.formula[][][] []\T1/ptm/m/n/10 for the for-mula in- ter-face (which al-lows a []\T1/pcr/m/n/10 data = . []\T1/ptm/m/n/10 ar-gu-ment ); [1501] [1502] [1503] Underfull \hbox (badness 3758) in paragraph at lines 10479--10482 []\T1/ptm/m/n/10 See also [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [1504] [1505] [1506] [1507] Overfull \hbox (6.78088pt too wide) in paragraph at lines 10724--10724 [] \T1/pcr/m/n/10 x = FALSE, y = TRUE, singular.ok = TRUE, contrasts = NULL , ...)[] Underfull \hbox (badness 4518) in paragraph at lines 10750--10755 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1508] Underfull \hbox (badness 4132) in paragraph at lines 10791--10795 []\T1/ptm/m/n/10 the method to be used in fit-ting the model. The de-fault meth od Underfull \hbox (badness 1112) in paragraph at lines 10845--10851 []\T1/ptm/m/n/10 A spec-i-fi-ca-tion of the form []\T1/pcr/m/n/10 first:second []\T1/ptm/m/n/10 in-di-cates the set of terms ob-tained by tak- [1509] Underfull \hbox (badness 10000) in paragraph at lines 10901--10904 []\T1/ptm/m/n/10 The generic ac-ces-sor func-tions [][][]\T1/pcr/m/n/10 coeffic ients[][][][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 effects[]\T1/ptm/m/n/10 , []\T1/ pcr/m/n/10 fitted.values []\T1/ptm/m/n/10 and [1510] [1511] [1512] Underfull \hbox (badness 2142) in paragraph at lines 11118--11121 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ [1513] Underfull \hbox (badness 1708) in paragraph at lines 11199--11203 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1514] Underfull \hbox (badness 10000) in paragraph at lines 11241--11247 [][][]\T1/pcr/m/n/10 glm[][][] []\T1/ptm/m/n/10 for com-put-ing []\T1/pcr/m/n/1 0 glm.obj[]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 anova.glm[][][][]\T1/ptm/m/n/1 0 ; the cor-re-spond-ing \T1/ptm/m/it/10 generic \T1/ptm/m/n/10 func-tions, Underfull \hbox (badness 1418) in paragraph at lines 11279--11284 []\T1/pcr/m/n/10 "average" []\T1/ptm/m/n/10 (= UP-GMA), []\T1/pcr/m/n/10 "mcqui tty" []\T1/ptm/m/n/10 (= WPGMA), []\T1/pcr/m/n/10 "median" []\T1/ptm/m/n/10 (= [1515] [1516] Underfull \hbox (badness 2635) in paragraph at lines 11412--11415 \T1/ptm/m/n/10 There are [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/n/10 , [][ ][]\T1/pcr/m/n/10 plot[][][] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 identify []\ T1/ptm/m/n/10 (see [][][]\T1/pcr/m/n/10 identify.hclust[][][][]\T1/ptm/m/n/10 ) meth-ods and the [1517] [1518] [1519] Underfull \hbox (badness 1694) in paragraph at lines 11597--11600 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1520] [1521] Overfull \hbox (25.98041pt too wide) in paragraph at lines 11710--11710 []\T1/pcr/m/n/9 heatmap(Ca, Rowv = FALSE, symm = TRUE, RowSideColors = cc, Col SideColors = cc,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 11743--11743 [] \T1/pcr/m/n/10 optim.start = c(alpha = 0.3, beta = 0.1, gamma = 0.1),[] Underfull \hbox (badness 10000) in paragraph at lines 11756--11760 []\T1/ptm/m/n/10 Character string to se-lect an []\T1/pcr/m/n/10 "additive" []\ T1/ptm/m/n/10 (the de-fault) or [1522] [1523] [1524] [1525] [1526] [1527] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12080--12080 []\T1/pcr/m/n/9 identify(hci, function(k) barplot(table(iris[k,5]), col = 2:4) , DEV.FUN = nD)[] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has been already used, duplicate ignored \relax l.12095 \aliasA{hat}{influence.measures}{hat} [1528] Overfull \hbox (0.78088pt too wide) in paragraph at lines 12158--12158 []\T1/pcr/m/n/10 cooks.distance(model, infl = lm.influence(model, do.coef = FA LSE),[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 12170--12170 []\T1/pcr/m/n/10 hatvalues(model, infl = lm.influence(model, do.coef = FALSE), ...)[] [1529] Underfull \hbox (badness 1062) in paragraph at lines 12223--12228 []\T1/ptm/m/n/10 The op-tional []\T1/pcr/m/n/10 infl[]\T1/ptm/m/n/10 , []\T1/pc r/m/n/10 res []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 sd []\T1/ptm/m/n/10 ar-gu-me nts are there to en-cour-age the use of these di- Underfull \hbox (badness 1052) in paragraph at lines 12240--12242 []\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1530] Underfull \vbox (badness 10000) has occurred while \output is active [1531] [1532] [1533] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12476--12476 []\T1/pcr/m/n/9 integrate(dnorm, 0, 20000) ## "fails" on many systems -- "wron gly" giving \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 0\TS1/pcr/m/n/9 '[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 12495--12495 [] \T1/pcr/m/n/10 type = c("l", "p", "b", "o", "c"), legend = TRUE,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 12496--12496 [] \T1/pcr/m/n/10 trace.label = deparse1(substitute(trace.fact or)),[] [1534] [1535] [1536] [1537] [1538] Underfull \hbox (badness 10000) in paragraph at lines 12827--12829 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/pcr/m/n/10 solve.de fault[][][] []\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 SSinit = Underfull \hbox (badness 4739) in paragraph at lines 12850--12852 []\T1/ptm/m/n/10 the es-ti-mate at time $\OML/cmm/m/it/10 t \OMS/cmsy/m/n/10 ^^ @ \OT1/cmr/m/n/10 1$ \T1/ptm/m/n/10 of the state un-cer-tainty ma-trix $\OML/cm m/m/it/10 Q$ \T1/ptm/m/n/10 (not up-dated by [1539] [1540] [1541] [1542] [1543] Underfull \hbox (badness 3417) in paragraph at lines 13163--13165 []\T1/ptm/m/n/10 an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of class []\T1/pcr/ m/n/10 "kmeans"[]\T1/ptm/m/n/10 , typ-i-cally the re-sult []\T1/pcr/m/n/10 ob [ ]\T1/ptm/m/n/10 of []\T1/pcr/m/n/10 ob <- Underfull \hbox (badness 2894) in paragraph at lines 13169--13173 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method Underfull \hbox (badness 1038) in paragraph at lines 13169--13173 \T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 "Hartigan-Wong"[]\T1/ptm/m/n/10 ): if pos-i-ti ve (or true), trac-ing in-for-ma-tion on the [1544] [1545] [1546] [1547] [1548] [1549] Underfull \hbox (badness 1496) in paragraph at lines 13597--13603 []\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran- dom-iza-tion Dis-tri-bu-tions of [1550] [1551] [1552] [1553] Overfull \hbox (4.38043pt too wide) in paragraph at lines 13852--13852 []\T1/pcr/m/n/9 lag.plot(sqrt(sunspots), set.lags = c(1:4, 9:12), pch = ".", c ol = "gold")[] [1554] [1555] Overfull \hbox (9.78043pt too wide) in paragraph at lines 13952--13952 []\T1/pcr/m/n/9 dimnames(cAS) <- list(paste("it =", format(1:10)), c("intercep t", "slope"))[] Underfull \hbox (badness 4518) in paragraph at lines 14000--14005 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1556] [1557] [1558] Underfull \hbox (badness 10000) in paragraph at lines 14203--14207 []\T1/ptm/m/n/10 More []\T1/pcr/m/n/10 lm() []\T1/ptm/m/n/10 ex-am-ples are ava il-able e.g., in [][][]\T1/pcr/m/n/10 anscombe[][][][]\T1/ptm/m/n/10 , [][][]\T 1/pcr/m/n/10 attitude[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 freeny[][][] []\T1/ptm/m/n/10 , [1559] [1560] [1561] [1562] [1563] [1564] Underfull \hbox (badness 1163) in paragraph at lines 14570--14578 \T1/ptm/m/n/10 els, [][][]\T1/pcr/m/n/10 influence[][][] []\T1/ptm/m/n/10 (etc on that page) for re-gres-sion di-ag-nos-tics, [][][]\T1/pcr/m/n/10 weighted.re siduals[][][][]\T1/ptm/m/n/10 , [1565] Underfull \hbox (badness 4518) in paragraph at lines 14692--14697 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1566] [1567] [1568] Overfull \hbox (12.78088pt too wide) in paragraph at lines 14882--14882 []\T1/pcr/m/n/10 plogis(q, location = 0, scale = 1, lower.tail = TRUE, log.p = FALSE)[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 14883--14883 []\T1/pcr/m/n/10 qlogis(p, location = 0, scale = 1, lower.tail = TRUE, log.p = FALSE)[] [1569] [1570] [1571] [1572] [1573] Overfull \hbox (6.78088pt too wide) in paragraph at lines 15227--15227 []\T1/pcr/m/n/10 plnorm(q, meanlog = 0, sdlog = 1, lower.tail = TRUE, log.p = FALSE)[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 15228--15228 []\T1/pcr/m/n/10 qlnorm(p, meanlog = 0, sdlog = 1, lower.tail = TRUE, log.p = FALSE)[] [1574] [1575] Overfull \hbox (18.78088pt too wide) in paragraph at lines 15321--15321 []\T1/pcr/m/n/10 lowess(x, y = NULL, f = 2/3, iter = 3, delta = 0.01 * diff(ra nge(x))) [1576] [1577] [1578] [1579] [1580] [1581] Underfull \hbox (badness 2726) in paragraph at lines 15730--15733 []\T1/ptm/m/n/10 character; one of []\T1/pcr/m/n/10 "logit"[]\T1/ptm/m/n/10 , [ ]\T1/pcr/m/n/10 "probit"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cauchit"[]\T1/ptm/ m/n/10 , []\T1/pcr/m/n/10 "cloglog"[]\T1/ptm/m/n/10 , [1582] Overfull \hbox (4.38043pt too wide) in paragraph at lines 15824--15824 []\T1/pcr/m/n/9 stopifnot(all.equal(pfm, pf2)) ## was off (rel.diff. 0.0766) i n R <= 3.5.0[] [1583] [1584] [1585] [1586] [1587] Overfull \hbox (42.78088pt too wide) in paragraph at lines 16081--16081 [] \T1/pcr/m/n/10 T = Thin.row(Proj(M) - Proj(X)), M = diag(nrow = p), X = ~0,[] [1588] [1589] [1590] [1591] [1592] Overfull \hbox (31.3804pt too wide) in paragraph at lines 16454--16454 []\T1/pcr/m/n/9 a <- model.frame(cbind(ncases,ncontrols) ~ agegp + tobgp + alc gp, data = esoph) [1593] [1594] Underfull \hbox (badness 1490) in paragraph at lines 16607--16612 \T1/ptm/m/n/10 those spec-i-fied in []\T1/pcr/m/n/10 ... []\T1/ptm/m/n/10 which are re-cy-cled to the num-ber of data frame rows. Un-like [1595] Overfull \hbox (4.38043pt too wide) in paragraph at lines 16643--16643 []\T1/pcr/m/n/9 model.frame(dist ~ speed, data = cars, subset = speed < 10, z = log(dist))[] Underfull \hbox (badness 1648) in paragraph at lines 16679--16681 []\T1/ptm/m/n/10 a data frame cre-ated with [][][]\T1/pcr/m/n/10 model.frame[][ ][][]\T1/ptm/m/n/10 . If an-other sort of ob-ject, [1596] Overfull \hbox (36.7804pt too wide) in paragraph at lines 16764--16764 []\T1/pcr/m/n/9 model.matrix(~ a + b, dd, contrasts.arg = list(a = "contr.sum" , b = contr.poly))[] [1597] Overfull \hbox (9.78043pt too wide) in paragraph at lines 16765--16765 []\T1/pcr/m/n/9 m.orth <- model.matrix(~a+b, dd, contrasts.arg = list(a = "con tr.helmert"))[] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605] Overfull \hbox (9.78043pt too wide) in paragraph at lines 17320--17320 []\T1/pcr/m/n/9 stopifnot(all(na.omit(1:3) == 1:3)) # does not affect objects with no NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s[] [1606] [1607] [1608] Overfull \hbox (25.98041pt too wide) in paragraph at lines 17553--17553 []\T1/pcr/m/n/9 persp(x, size, dnb <- outer(x, size, function(x,s) dnbinom(x, s, prob = 0.4)),[] [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616] [1617] [1618] Underfull \vbox (badness 10000) has occurred while \output is active [1619] Overfull \hbox (42.18039pt too wide) in paragraph at lines 18273--18273 []\T1/pcr/m/n/9 ## adjusting the convergence test by adding \TS1/pcr/m/n/9 '\T 1/pcr/m/n/9 scaleOffset\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 to its denominator RSS:[] Underfull \vbox (badness 10000) has occurred while \output is active [1620] Overfull \hbox (74.58035pt too wide) in paragraph at lines 18292--18292 []\T1/pcr/m/n/9 ## Here, requiring close convergence, must use more accurate n umerical differentiation,[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 18293--18293 []\T1/pcr/m/n/9 ## as this typically gives Error: "step factor .. reduced belo w \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 minFactor\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 .."[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 18297--18297 []\T1/pcr/m/n/9 ## central differencing works here typically (PR#18165: not co nverging on *some*):[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 18298--18298 []\T1/pcr/m/n/9 ctr2 <- nls.control(nDcentral=TRUE, tol = 8e-8, # <- even smal ler than above[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 18301--18301 [] \T1/pcr/m/n/9 (grepl("^aarch64.*linux", R.version$platform) && grepl ("^NixOS", osVersion)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 18333--18333 [] \T1/pcr/m/n/9 start = list(a = rep(b[2], 21), b = rep(b[3], 21 ), th = b[1]))[] [1621] [1622] [1623] Overfull \hbox (9.78043pt too wide) in paragraph at lines 18509--18509 []\T1/pcr/m/n/9 DN.srt <- sortedXyData(expression(log(conc)), expression(densi ty), DNase.2)[] [1624] Overfull \hbox (20.58041pt too wide) in paragraph at lines 18556--18556 []\T1/pcr/m/n/9 DN.srt <- sortedXyData( expression(log(conc)), expression(dens ity), DNase.2 )[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 18603--18603 []\T1/pcr/m/n/9 DN.srt <- sortedXyData( expression(log(conc)), expression(dens ity), DNase.2 )[] [1625] [1626] [1627] [1628] Overfull \hbox (102.78088pt too wide) in paragraph at lines 18820--18820 [] \T1/pcr/m/n/10 eps = .Machine$double.eps ^ (1/if(central) 3 els e 2), central = FALSE)[] [1629] [1630] [1631] [1632] Underfull \hbox (badness 10000) in paragraph at lines 19105--19111 []\T1/ptm/m/n/10 Method []\T1/pcr/m/n/10 "Brent" []\T1/ptm/m/n/10 is for one-di mensional prob-lems only, us-ing [][][]\T1/pcr/m/n/10 optimize[][][](, [1633] Underfull \hbox (badness 1248) in paragraph at lines 19141--19144 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 1661) in paragraph at lines 19154--19158 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 1478) in paragraph at lines 19162--19166 \T1/ptm/m/n/10 if []\T1/pcr/m/n/10 control$trace []\T1/ptm/m/n/10 is pos-i-tive . De-faults to ev-ery 10 it-er-a-tions for []\T1/pcr/m/n/10 "BFGS" []\T1/ptm/m/ n/10 and [1634] Underfull \hbox (badness 2042) in paragraph at lines 19220--19222 []\T1/ptm/m/n/10 indicates an er-ror from the []\T1/pcr/m/n/10 "L-BFGS-B" []\T1 /ptm/m/n/10 method; see com-po-nent [1635] Overfull \hbox (15.18042pt too wide) in paragraph at lines 19326--19326 [] \T1/pcr/m/n/9 lower = rep(2, 25), upper = rep(4, 25)) # par[24] is *no t* at boundary[] [1636] Overfull \hbox (9.78043pt too wide) in paragraph at lines 19369--19369 [] \T1/pcr/m/n/9 main = "initial solution of traveling salesman problem", axes = FALSE)[] Overfull \hbox (123.1803pt too wide) in paragraph at lines 19387--19387 []\T1/pcr/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (96.18033pt too wide) in paragraph at lines 19390--19390 []\T1/pcr/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1637] Overfull \hbox (36.78088pt too wide) in paragraph at lines 19410--19410 []\T1/pcr/m/n/10 optimize(f, interval, ..., lower = min(interval), upper = max (interval), Overfull \hbox (36.78088pt too wide) in paragraph at lines 19413--19413 []\T1/pcr/m/n/10 optimise(f, interval, ..., lower = min(interval), upper = max (interval),[] Underfull \hbox (badness 2564) in paragraph at lines 19448--19459 []\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 f []\T1/ptm/m/n/10 is never eva l-u-ated at two points closer to-gether than $\OML/cmm/m/it/10 ^^O$$\OMS/cmsy/m /n/10 j\OML/cmm/m/it/10 x[]\OMS/cmsy/m/n/10 j \OT1/cmr/m/n/10 + (\OML/cmm/m/it/ 10 tol=\OT1/cmr/m/n/10 3)$\T1/ptm/m/n/10 , Underfull \hbox (badness 1082) in paragraph at lines 19448--19459 \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 ^^O$ \T1/ptm/m/n/10 is ap-prox-i-mately []\T1/pcr/m/n/10 sqrt([][].Machine[][][]$double.eps) []\T1/ptm/m/n/10 and $\OML /cmm/m/it/10 x[]$ \T1/ptm/m/n/10 is the fi-nal ab-scissa [1638] Overfull \hbox (9.78043pt too wide) in paragraph at lines 19511--19511 []\T1/pcr/m/n/9 f <- function(x) ifelse(x > -1, ifelse(x < 4, exp(-1/abs(x - 1)), 10), 10)[] [1639] [1640] [1641] Overfull \hbox (9.78043pt too wide) in paragraph at lines 19741--19741 []\T1/pcr/m/n/9 matplot(p, p.adj, ylab="p.adjust(p, meth)", type = "l", asp = 1, lty = 1:6,[] [1642] [1643] Underfull \hbox (badness 1337) in paragraph at lines 19852--19855 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1644] [1645] [1646] [1647] [1648] Overfull \hbox (0.78088pt too wide) in paragraph at lines 20170--20170 [] \T1/pcr/m/n/10 par.fit = list(col = "red", cex = 1.5, pch = 13, lwd = 1.5),[] [1649] [1650] Overfull \hbox (24.78088pt too wide) in paragraph at lines 20257--20257 [] \T1/pcr/m/n/10 expression("Cook\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 s dist vs Leverage* " * h[ii] / (1 - h[ii]))),[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 20259--20259 [] \T1/pcr/m/n/10 panel.smooth(x, y, iter=iter.smooth, ...) else points,[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 20261--20261 [] \T1/pcr/m/n/10 ask = prod(par("mfcol")) < length(which) && dev.interact ive(),[] [1651] Underfull \hbox (badness 10000) in paragraph at lines 20321--20327 \T1/pcr/m/n/10 "bottomleft", legend = "Cook\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 s di stance", lty = cook.lty, Underfull \hbox (badness 10000) in paragraph at lines 20321--20327 \T1/pcr/m/n/10 col = cook.col, text.col = cook.col, bty = "n", x.intersp Underfull \hbox (badness 10000) in paragraph at lines 20329--20335 []\T1/ptm/m/n/10 the num-ber of ro-bust-ness it-er-a-tions, the ar-gu-ment []\T 1/pcr/m/n/10 iter []\T1/ptm/m/n/10 in Underfull \hbox (badness 10000) in paragraph at lines 20340--20343 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 1 or 2, to be used in []\T1/pcr/m /n/10 ylim <- [1652] [1653] [1654] [1655] Overfull \hbox (9.78043pt too wide) in paragraph at lines 20607--20607 []\T1/pcr/m/n/9 nlmod <- nls(y ~ Const + A * exp(B * x), start=list(Const=100 , A=10, B=1))[] [1656] [1657] Overfull \hbox (0.78088pt too wide) in paragraph at lines 20738--20738 [] \T1/pcr/m/n/10 main = NULL, ci.col = "blue", ci.lty = 3, ...)[] [1658] Underfull \hbox (badness 1194) in paragraph at lines 20748--20751 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1659] Underfull \hbox (badness 1107) in paragraph at lines 20806--20808 []\T1/ptm/m/n/10 numeric vec-tor of ab-scissa val-ues at which to eval-u-ate [] \T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . De-faults to Overfull \hbox (20.58041pt too wide) in paragraph at lines 20861--20861 []\T1/pcr/m/n/9 plot(sfun.2);plot(sfun.2, xval = tt, add = TRUE, col = "orange ") # all colors[] [1660] Overfull \hbox (31.3804pt too wide) in paragraph at lines 20868--20868 []\T1/pcr/m/n/9 legend(2.5, 1.9, paste("f =", c(0, 0.2, 1)), col = 1:3, lty = 1, y.intersp = 1)[] [1661] Overfull \hbox (20.58041pt too wide) in paragraph at lines 20962--20962 []\T1/pcr/m/n/9 title("plot(ts(..), axes=FALSE, ann=FALSE, frame.plot=TRUE, ma r..., oma...)")[] [1662] [1663] Overfull \hbox (4.38043pt too wide) in paragraph at lines 21090--21090 [] \T1/pcr/m/n/9 ppois(10*(15:25), lambda = 100, lower.tail = FALSE) # no cancellation[] [1664] Underfull \hbox (badness 7740) in paragraph at lines 21153--21155 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Exact Poisson test" [ ]\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 "Comparison of [1665] Overfull \hbox (6.78088pt too wide) in paragraph at lines 21201--21201 []\T1/pcr/m/n/10 poly(x, ..., degree = 1, coefs = NULL, raw = FALSE, simple = FALSE) [1666] Underfull \hbox (badness 10000) in paragraph at lines 21262--21264 []\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 poly(*, simple=TRUE)[]\T1/ptm/m/n/10 , [] \T1/pcr/m/n/10 polym(*, coefs=)[]\T1/ptm/m/n/10 , and Overfull \hbox (4.38043pt too wide) in paragraph at lines 21299--21299 [] \T1/pcr/m/n/9 zm <- zapsmall(polym ( 1:4, c(1, 4:6), degree = 3)) # or just poly():[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 21304--21304 []\T1/pcr/m/n/9 ## poly(, df) --- used to fail till July 14 (vive la F rance!), 2017:[] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] Overfull \hbox (58.38037pt too wide) in paragraph at lines 22158--22158 [] \T1/pcr/m/n/9 all.equal(pz3$sdev, pZ$sdev, tolerance = 1e-15)) # e xactly equal typically[] [1681] Underfull \hbox (badness 6859) in paragraph at lines 22225--22232 [][][]\T1/pcr/m/n/10 predict.glm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 p redict.lm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.loess[][][][]\T1 /ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.nls[][][][]\T1/ptm/m/n/10 , [][][]\T 1/pcr/m/n/10 predict.poly[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 22236--22242 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/pcr/m/n/10 predict.ar[ ][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/pcr/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1682] [1683] [1684] [1685] [1686] Overfull \hbox (54.78088pt too wide) in paragraph at lines 22524--22524 [] \T1/pcr/m/n/10 rankdeficient = c("warnif", "simple", "non-estim", "N A", "NAwarn"),[] Underfull \hbox (badness 10000) in paragraph at lines 22550--22553 []\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string spec-i-fy-ing what should hap-pen in the Underfull \hbox (badness 10000) in paragraph at lines 22550--22553 \T1/ptm/m/n/10 case of a rank de-fi-cient model, i.e., when []\T1/pcr/m/n/10 ob ject$rank < Underfull \hbox (badness 5832) in paragraph at lines 22555--22560 \T1/ptm/m/n/10 cases, i.e., vec-tors not in the same pre-dic-tor sub-space as t he Underfull \hbox (badness 8151) in paragraph at lines 22555--22560 \T1/ptm/m/n/10 orig-i-nal data (with tol-er-ance []\T1/pcr/m/n/10 tol[]\T1/ptm/ m/n/10 ). In that case, the non- Underfull \hbox (badness 1184) in paragraph at lines 22555--22560 \T1/ptm/m/n/10 estimable in-dices are also re-turned as at-tribute []\T1/pcr/m/ n/10 "non-estim" []\T1/ptm/m/n/10 (see [1687] [1688] [1689] [1690] [1691] [1692] [1693] [1694] Overfull \hbox (48.78088pt too wide) in paragraph at lines 23023--23023 [] \T1/pcr/m/n/10 subset = rep_len(TRUE, nrow(as.matrix(x))), fix_sign = TRUE, ...)[] [1695] [1696] [1697] [1698] Overfull \hbox (0.78088pt too wide) in paragraph at lines 23307--23307 [] \T1/pcr/m/n/10 has.Pvalue = nc >= 4L && length(cn <- colnames(x )) &&[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 23308--23308 [] \T1/pcr/m/n/10 substr(cn[nc], 1L, 3L) %in% c("Pr(" , "p-v"),[] [1699] [1700] [1701] [1702] [1703] [1704] [1705] Underfull \hbox (badness 1337) in paragraph at lines 23712--23718 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1706] [1707] [1708] [1709] [1710] Overfull \hbox (15.18042pt too wide) in paragraph at lines 24024--24024 []\T1/pcr/m/n/9 with(d, qqplot(Female, Male, pch = 19, xlim = c(-31, 31), ylim = c(-31, 31),[] [1711] [1712] [1713] [1714] Underfull \hbox (badness 10000) in paragraph at lines 24356--24358 []\T1/ptm/m/n/10 Wicklin, R. (2017) Sam-ple quan-tiles: A com-par-i-son of 9 de f-i-ni-tions; Underfull \hbox (badness 10000) in paragraph at lines 24356--24358 \T1/ptm/m/n/10 SAS Blog. [][]$\T1/pcr/m/n/10 https : / / blogs . sas . com / co ntent / iml / 2017 / 05 / 24 / Underfull \hbox (badness 10000) in paragraph at lines 24359--24360 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . or g / wiki / Quantile # Estimating _ [1715] [1716] Overfull \hbox (48.78088pt too wide) in paragraph at lines 24470--24470 [] \T1/pcr/m/n/10 method = c("non.compact", "row.compact", "col.compact" , "compact"),[] [1717] Underfull \hbox (badness 1028) in paragraph at lines 24528--24531 []\T1/ptm/m/n/10 further ar-gu-ments to be passed to or from meth-ods; for []\T 1/pcr/m/n/10 write() []\T1/ptm/m/n/10 and [1718] [1719] Underfull \hbox (badness 10000) in paragraph at lines 24643--24646 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by [1720] Underfull \hbox (badness 7099) in paragraph at lines 24698--24700 []\T1/ptm/m/n/10 This, as [][][]\T1/pcr/m/n/10 reorder[][][]()[]\T1/ptm/m/n/10 , is a spe-cial case of sim-ply call-ing [][][]\T1/pcr/m/n/10 factor[][][](x, l evels = [1721] Underfull \hbox (badness 7099) in paragraph at lines 24762--24764 []\T1/ptm/m/n/10 This, as [][][]\T1/pcr/m/n/10 relevel[][][]()[]\T1/ptm/m/n/10 , is a spe-cial case of sim-ply call-ing [][][]\T1/pcr/m/n/10 factor[][][](x, l evels = Overfull \hbox (31.3804pt too wide) in paragraph at lines 24797--24797 []\T1/pcr/m/n/9 bymedianR <- with(InsectSprays, reorder(spray, count, median, decreasing=TRUE))[] [1722] [1723] Overfull \hbox (9.78043pt too wide) in paragraph at lines 24873--24873 []\T1/pcr/m/n/9 plot(reorder(dd, 10:1, agglo.FUN = mean), main = "reorder(dd, 10:1, mean)")[] [1724] [1725] Overfull \hbox (0.78088pt too wide) in paragraph at lines 24990--24990 []\T1/pcr/m/n/10 # varying = ___, # list / matrix / vector (use with care)[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 24991--24991 []\T1/pcr/m/n/10 # v.names = ___, # vector of variable names in long format[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 24992--24992 []\T1/pcr/m/n/10 # timevar, times, # name / values of constructed time variable[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 24993--24993 []\T1/pcr/m/n/10 # idvar, ids) # name / values of constructed id v ariable[] [1726] [1727] Underfull \hbox (badness 10000) in paragraph at lines 25150--25155 [][][]\T1/pcr/m/n/10 stack[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 aperm[] [][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 relist[][][] []\T1/ptm/m/n/10 for r e-shap-ing the re-sult of [][][]\T1/pcr/m/n/10 unlist[][][][]\T1/ptm/m/n/10 . [ ][][]\T1/pcr/m/n/10 xtabs[][][] []\T1/ptm/m/n/10 and Underfull \hbox (badness 2495) in paragraph at lines 25150--25155 [][][]\T1/pcr/m/n/10 as.data.frame.table[][][] []\T1/ptm/m/n/10 for cre-at-ing con-tin-gency ta-bles and con-vert-ing them back to Overfull \hbox (15.18042pt too wide) in paragraph at lines 25163--25163 []\T1/pcr/m/n/9 ## long to wide (direction = "wide") requires idvar and timeva r at a minimum[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 25164--25164 []\T1/pcr/m/n/9 reshape(Indometh, direction = "wide", idvar = "Subject", timev ar = "time")[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 25183--25183 []\T1/pcr/m/n/9 reshape(df, timevar = "visit", idvar = "id", direction = "wide ", v.names = "x")[] [1728] [1729] Overfull \hbox (60.78088pt too wide) in paragraph at lines 25288--25288 [] \T1/pcr/m/n/10 na.action = c("+Big_alternate", "-Big_alternate", "na. omit", "fail"),[] Underfull \hbox (badness 1033) in paragraph at lines 25331--25337 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1730] Underfull \hbox (badness 10000) in paragraph at lines 25352--25355 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/pcr/m/n/10 y = r unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/pcr/m/n/10 y[j] = [1731] Overfull \hbox (9.78043pt too wide) in paragraph at lines 25430--25430 []\T1/pcr/m/n/9 plot(myNHT, type = "b", ylim = c(48, 60), main = "Running Medi ans Example")[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 25456--25456 []\T1/pcr/m/n/9 ## An example with initial NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s - used to fail badly (notably for "Turlach"):[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 25468--25468 []\T1/pcr/m/n/9 matplot(y = cbind(x15, rT15), type = "b", ylim = c(1,9), pch=1 :5, xlab = NA,[] [1732] [1733] [1734] [1735] [1736] [1737] Underfull \vbox (badness 10000) has occurred while \output is active [1738] [1739] Underfull \hbox (badness 6268) in paragraph at lines 25927--25932 [][][]\T1/pcr/m/n/10 SSasympOrig[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 S Sbiexp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSfol[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSfpl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSgo mpertz[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSlogis[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/pcr/m/n/10 SSmicmen[][][][]\T1/ptm/m/n/10 , [1740] [1741] [1742] Underfull \hbox (badness 1867) in paragraph at lines 26137--26139 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 26153--26157 []\T1/ptm/m/n/10 where []\T1/pcr/m/n/10 NN <- [][]nobs[][][](object, use.fallba ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 PP Underfull \hbox (badness 10000) in paragraph at lines 26153--26157 \T1/pcr/m/n/10 <- sum(!is.na([][]coef[][][](object))) []\T1/ptm/m/n/10 -- where in older \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions this was [1743] Overfull \hbox (20.58041pt too wide) in paragraph at lines 26195--26195 []\T1/pcr/m/n/9 sigma(lm1) # ~= 7.165 = "Residual standard error" printed fr om summary(lm1)[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 26202--26202 []\T1/pcr/m/n/9 stopifnot(all.equal(sigma(fm.DN1), summary(fm.DN1)$sigma, tole rance=1e-15))[] [1744] [1745] [1746] Underfull \hbox (badness 2495) in paragraph at lines 26384--26393 []\T1/ptm/m/n/10 For an in-verse gaus-sian GLM the model as-sumed is $\OML/cmm/ m/it/10 IG\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 ^^V[]; ^^Uw[]\OT1/cmr/m/n/10 )$ \T1 /ptm/m/n/10 (see [][]$\T1/pcr/m/n/10 https : / / en . [1747] [1748] Underfull \hbox (badness 2197) in paragraph at lines 26530--26533 []\T1/pcr/m/n/10 psmirnov []\T1/ptm/m/n/10 gives the dis-tri-bu-tion func-tion, []\T1/pcr/m/n/10 qsmirnov []\T1/ptm/m/n/10 gives the quan-tile func-tion, and Overfull \hbox (24.78088pt too wide) in paragraph at lines 26550--26550 [] \T1/pcr/m/n/10 twiceit = FALSE, endrule = c("Tukey", "copy"), do.ends = FALSE)[] Underfull \hbox (badness 1412) in paragraph at lines 26557--26559 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing the kind of smoother re-qui red; de-faults to [1749] [1750] Overfull \hbox (25.98041pt too wide) in paragraph at lines 26642--26642 []\T1/pcr/m/n/9 matlines(cbind(smooth(x, "3R"), smooth(x, "S"), smooth(x, "3RS S"), smooth(x)))[] Overfull \hbox (84.78088pt too wide) in paragraph at lines 26667--26667 []\T1/pcr/m/n/10 smooth.spline(x, y = NULL, w = NULL, df, spar = NULL, lambda = NULL, cv = FALSE, Overfull \hbox (66.78088pt too wide) in paragraph at lines 26670--26670 [] \T1/pcr/m/n/10 control.spar = list(), tol = 1e-6 * IQR(x), kee p.stuff = FALSE)[] [1751] [1752] [1753] Overfull \hbox (6.78088pt too wide) in paragraph at lines 26895--26895 [] \T1/pcr/m/n/10 nx <- length(x) - sum(duplicated( round((x - mean(x)) / t ol) ))[] Underfull \hbox (badness 2547) in paragraph at lines 26899--26905 []\T1/ptm/m/n/10 The de-fault []\T1/pcr/m/n/10 all.knots = FALSE []\T1/ptm/m/n/ 10 and []\T1/pcr/m/n/10 nknots = .nknots.smspl[]\T1/ptm/m/n/10 , en-tails us-in g only [1754] Overfull \hbox (4.38043pt too wide) in paragraph at lines 26946--26946 []\T1/pcr/m/n/9 plot(dist ~ speed, data = cars, main = "data(cars) & smoothi ng splines")[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 26967--26967 []\T1/pcr/m/n/9 with(cars.spl$fit, min + range * knot[-c(1:3, nk+1 +1:3)]) # = = unique(cars$speed)[] [1755] [1756] [1757] Overfull \hbox (0.78088pt too wide) in paragraph at lines 27159--27159 []\T1/pcr/m/n/10 spec.ar(x, n.freq, order = NULL, plot = TRUE, na.action = na. fail, [1758] [1759] [1760] [1761] Underfull \hbox (badness 10000) in paragraph at lines 27424--27429 \T1/ptm/m/n/10 This makes the spec-tral den-sity a den-sity over the range []\T 1/pcr/m/n/10 (-frequency(x)/2, [1762] [1763] Overfull \hbox (36.78088pt too wide) in paragraph at lines 27538--27538 [] \T1/pcr/m/n/10 method = c("fmm", "periodic", "natural", "monoH.FC" , "hyman"),[] [1764] [1765] Overfull \hbox (69.18036pt too wide) in paragraph at lines 27720--27720 []\T1/pcr/m/n/9 set.seed(8); x <- sort(round(rnorm(30), 1)); y <- round(sin(pi * x) + rnorm(30)/10, 3)[] [1766] Overfull \hbox (52.98038pt too wide) in paragraph at lines 27726--27726 []\T1/pcr/m/n/9 plot(x, y, main = "spline(x,y, ties=list(\"ordered\", mean)) for when x has ties")[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 27735--27735 []\T1/pcr/m/n/9 curve(splinefun(x., y., method = "monoH.FC")(x), add = TRUE, c ol = 3, n = 1001)[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 27736--27736 []\T1/pcr/m/n/9 curve(splinefun(x., y., method = "hyman") (x), add = TRUE, c ol = 4, n = 1001)[] [1767] Underfull \hbox (badness 2922) in paragraph at lines 27805--27810 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion Overfull \hbox (9.78043pt too wide) in paragraph at lines 27842--27842 [] \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(0,5.2), xlim = c(-.3, 5),[] [1768] Overfull \hbox (42.18039pt too wide) in paragraph at lines 27845--27845 [] \T1/pcr/m/n/9 {f[phi](x) == phi[1] + (phi[2]-phi[1])*~e^ {-e^{phi[3]}*~x}}))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 27854--27854 [] \T1/pcr/m/n/9 c(0 , 1 ), 1, length = 0.08, angle = 25); text(0. 5, 1, quote(1))[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 27855--27855 [] \T1/pcr/m/n/9 y0 <- 1 + 4*exp(-3/4) ; t.5 <- log(2) / exp(-3/4) ; AR2 <- 3 # (Asym + R0)/2[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 27859--27859 [] \T1/pcr/m/n/9 axis(2, at = c(1,AR2,5), labels= expression(phi[2], frac(phi [1]+phi[2],2), phi[1]),[] [1769] Underfull \hbox (badness 3240) in paragraph at lines 27913--27916 [][][]\T1/pcr/m/n/10 nls[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 selfStart [][][][]\T1/ptm/m/n/10 ; []\T1/pcr/m/n/10 example(SSasympOff) []\T1/ptm/m/n/10 gives graph show-ing the []\T1/pcr/m/n/10 SSasympOff Overfull \hbox (36.7804pt too wide) in paragraph at lines 27934--27934 [] \T1/pcr/m/n/9 stopifnot( all.equal(yy, SSasympOff(xx, Asym = 5, lrc = log( 0.4), c0 = 3/4)) )[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 27937--27937 [] \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(-.5,6), xlim = c(-1, 8),[] [1770] Overfull \hbox (4.38043pt too wide) in paragraph at lines 28020--28020 [] \T1/pcr/m/n/9 stopifnot( all.equal(yy, SSasympOrig(xx, Asym = 5, lrc = log (log(2)))) )[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 28024--28024 [] \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(0,5), xlim = c(-1/4, 5),[] [1771] Overfull \hbox (58.38037pt too wide) in paragraph at lines 28034--28034 [] \T1/pcr/m/n/9 axis(2, at = 5*c(1/2,1), labels= expression(frac(phi[1],2), phi[1]), pos=0, las=1)[] Overfull \hbox (106.98032pt too wide) in paragraph at lines 28039--28039 [] \T1/pcr/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] Underfull \hbox (badness 2922) in paragraph at lines 28075--28081 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1772] Overfull \hbox (4.38043pt too wide) in paragraph at lines 28097--28097 []\T1/pcr/m/n/9 print(getInitial(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), dat a = Indo.1),[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 28113--28113 [] \T1/pcr/m/n/9 legend("topright", c("y1+y2", "y1 = 3.5 * exp(-4*x)", "y2 = 1.5 * exp(-x)"),[] Overfull \hbox (74.58035pt too wide) in paragraph at lines 28127--28127 []\T1/pcr/m/n/9 ## Fails by default (scaleOffset=0) on most platforms {also af ter increasing maxiter !}[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 28129--28129 [] \T1/pcr/m/n/9 nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d atN, trace=TRUE)[] Overfull \hbox (128.58029pt too wide) in paragraph at lines 28135--28135 [] \T1/pcr/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol= 1e-11, nDcentral=TRUE), trace=TRUE)[] [1773] [1774] Overfull \hbox (30.78088pt too wide) in paragraph at lines 28246--28246 []\T1/pcr/m/n/10 Dose * exp(lKe+lKa-lCl) * (exp(-exp(lKe)*input) - exp(-exp(lK a)*input)) [1775] Underfull \hbox (badness 2922) in paragraph at lines 28308--28313 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1776] Overfull \hbox (69.18036pt too wide) in paragraph at lines 28346--28346 [] \T1/pcr/m/n/9 mtext(quote(list(phi[1] == "A", phi[2] == "B", phi[3] == "xm id", phi[4] == "scal")))[] Underfull \hbox (badness 2922) in paragraph at lines 28395--28400 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1777] Overfull \hbox (4.38043pt too wide) in paragraph at lines 28426--28426 []\T1/pcr/m/n/9 lines(x, do.call(SSgompertz, c(list(x=x), coef(fm1))), col = " red", lwd=2)[] Underfull \hbox (badness 2922) in paragraph at lines 28460--28465 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1778] Overfull \hbox (25.98041pt too wide) in paragraph at lines 28485--28485 []\T1/pcr/m/n/9 ## Initial values are in fact the converged one here, "Number of iter...: 0" :[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 28489--28489 []\T1/pcr/m/n/9 fm2 <- update(fm1, control=nls.control(tol = 1e-9, warnOnly=TR UE), trace = TRUE)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 28509--28509 [] \T1/pcr/m/n/9 mtext(quote(list(phi[1] == "Asym", phi[2] == "xmid", phi[3] == "scal")))[] [1779] Overfull \hbox (20.58041pt too wide) in paragraph at lines 28519--28519 [] \T1/pcr/m/n/9 segments(c(2,2.6,2.6), c(0, 2.5,3.5), # NB. SSlogis(x = xmid = 2) = 2.5[] Underfull \hbox (badness 2922) in paragraph at lines 28554--28559 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion Overfull \hbox (4.38043pt too wide) in paragraph at lines 28576--28576 []\T1/pcr/m/n/9 print(getInitial(rate ~ SSmicmen(conc, Vm, K), data = PurTrt), digits = 3)[] [1780] Overfull \hbox (15.18042pt too wide) in paragraph at lines 28594--28594 [] \T1/pcr/m/n/9 ann = FALSE, axes = FALSE, main = "Parameters in the SS micmen model")[] [1781] Underfull \hbox (badness 6493) in paragraph at lines 28646--28651 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 x[]\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion Overfull \hbox (4.38043pt too wide) in paragraph at lines 28674--28674 []\T1/pcr/m/n/9 getInitial(weight ~ SSweibull(Time, Asym, Drop, lrc, pwr), dat a = Chick.6)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 28676--28676 []\T1/pcr/m/n/9 fm1 <- nls(weight ~ SSweibull(Time, Asym, Drop, lrc, pwr), dat a = Chick.6)[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 28680--28680 []\T1/pcr/m/n/9 plot(weight ~ Time, Chick.6, xlim = c(0, 21), main = "SSweibul l() fit to Chick.6")[] Overfull \hbox (69.18036pt too wide) in paragraph at lines 28683--28683 []\T1/pcr/m/n/9 As <- coef(fm1)[["Asym"]]; abline(v = 0, h = c(As, As - coef(f m1)[["Drop"]]), lty = 3)[] [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] Underfull \hbox (badness 3396) in paragraph at lines 29564--29566 []\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.glm"[]\T1/ptm/m/ n/10 , usu-ally, a re-sult of a call to [1796] [1797] [1798] Underfull \hbox (badness 2237) in paragraph at lines 29743--29745 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /pcr/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1799] [1800] Underfull \hbox (badness 2591) in paragraph at lines 29907--29909 []\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.nls"[]\T1/ptm/m/ n/10 , usu-ally the re-sult of a call to [1801] Underfull \hbox (badness 2237) in paragraph at lines 29953--29956 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /pcr/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1802] Overfull \hbox (48.78088pt too wide) in paragraph at lines 30026--30026 []\T1/pcr/m/n/10 supsmu(x, y, wt =, span = "cv", periodic = FALSE, bass = 0, t race = FALSE) [1803] [1804] Underfull \hbox (badness 3407) in paragraph at lines 30135--30139 []\T1/ptm/m/n/10 character vec-tor, one shorter than (the \T1/ptm/m/it/10 aug-m ented\T1/ptm/m/n/10 , see []\T1/pcr/m/n/10 corr []\T1/ptm/m/n/10 be-low) [1805] Overfull \hbox (47.58038pt too wide) in paragraph at lines 30205--30205 []\T1/pcr/m/n/9 symnum(ii, cutpoints = 2*(0:4), symbols = c(".", "-", "+", "$ "), show.max = TRUE)[] [1806] Underfull \hbox (badness 1337) in paragraph at lines 30268--30272 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1807] [1808] [1809] [1810] Overfull \hbox (9.78043pt too wide) in paragraph at lines 30547--30547 []\T1/pcr/m/n/9 persp(tt, ncp, ptn, zlim = 0:1, r = 2, phi = 20, theta = 200, main = t.tit,[] [1811] Overfull \hbox (0.78088pt too wide) in paragraph at lines 30590--30590 [] \T1/pcr/m/n/10 use.factor.levels = TRUE, smooth = NULL, ylim = "com mon",[] Underfull \hbox (badness 1616) in paragraph at lines 30616--30619 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1812] Overfull \hbox (20.58041pt too wide) in paragraph at lines 30695--30695 []\T1/pcr/m/n/9 termplot(model, partial.resid = TRUE, smooth = panel.smooth, s pan.smth = 1/4)[] [1813] Underfull \hbox (badness 10000) in paragraph at lines 30733--30738 []\T1/ptm/m/n/10 There are meth-ods for classes []\T1/pcr/m/n/10 "aovlist"[]\T1 /ptm/m/n/10 , []\T1/pcr/m/n/10 "terms"[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 " formula" []\T1/ptm/m/n/10 (see [1814] Overfull \hbox (0.78088pt too wide) in paragraph at lines 30773--30773 []\T1/pcr/m/n/10 terms(x, specials = NULL, abb = NULL, data = NULL, neg.out = TRUE,[] [1815] [1816] [1817] Overfull \hbox (12.78088pt too wide) in paragraph at lines 31007--31007 []\T1/pcr/m/n/10 toeplitz2(x, nrow = length(x) +1 - ncol, ncol = length(x) +1 - nrow)[] Underfull \hbox (badness 2913) in paragraph at lines 31013--31017 []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 toeplitz(x, *)[]\T1/ptm/m/n/10 : the firs t col-umn of the Toeplitz ma-trix; for [1818] Overfull \hbox (36.7804pt too wide) in paragraph at lines 31050--31050 []\T1/pcr/m/n/9 # Matrix of character (could also have logical, raw, complex . .) {also warning}:[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 31063--31063 [] \T1/pcr/m/n/9 colnames(W) <- paste0(",", if(n <= 9) 1:n else c(1:9, lette rs[seq_len(n-9)]))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 31074--31074 []\T1/pcr/m/n/9 y.hat <- W. %*% y # y.hat := smoothed(y) ("mass preserving" -> longer than y)[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 31076--31076 []\T1/pcr/m/n/9 plot(x,y, type="b", xlim=c(1,m)); curve(f(x), 1,n, col="gray", lty=2, add=TRUE)[] [1819] Overfull \hbox (30.78088pt too wide) in paragraph at lines 31108--31108 [] \T1/pcr/m/n/10 class = if(nseries > 1) c("mts", "ts", "matrix", "array") else "ts",[] [1820] Underfull \hbox (badness 1655) in paragraph at lines 31186--31189 []\T1/pcr/m/n/10 is.mts(x) []\T1/ptm/m/n/10 tests if an ob-ject []\T1/pcr/m/n/1 0 x []\T1/ptm/m/n/10 is a mul-ti-vari-ate time se-ries, i.e., ful-fills []\T1/p cr/m/n/10 is.ts(x)[]\T1/ptm/m/n/10 , Overfull \hbox (20.58041pt too wide) in paragraph at lines 31224--31224 []\T1/pcr/m/n/9 utils:: methods(class = "ts") # all functions with methods ava ilable for "ts"[] [1821] [1822] [1823] [1824] [1825] Overfull \hbox (12.78088pt too wide) in paragraph at lines 31558--31558 []\T1/pcr/m/n/10 ptukey(q, nmeans, df, nranges = 1, lower.tail = TRUE, log.p = FALSE) [1826] Overfull \hbox (12.78088pt too wide) in paragraph at lines 31559--31559 []\T1/pcr/m/n/10 qtukey(p, nmeans, df, nranges = 1, lower.tail = TRUE, log.p = FALSE)[] [1827] [1828] [1829] [1830] Overfull \hbox (30.78088pt too wide) in paragraph at lines 31859--31859 [] \T1/pcr/m/n/10 extendInt = c("no", "yes", "downX", "upX"), check.con v = FALSE,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 31860--31860 [] \T1/pcr/m/n/10 tol = .Machine$double.eps^0.25, maxiter = 1000, trace = 0)[] [1831] [1832] Overfull \hbox (31.3804pt too wide) in paragraph at lines 31989--31989 []\T1/pcr/m/n/9 ##--- uniroot() with new interval extension + checking feature s: --------------[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 31998--31998 []\T1/pcr/m/n/9 ## where as \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 extendInt="yes"\TS1 /pcr/m/n/9 ' \T1/pcr/m/n/9 simply first enlarges the search interval:[] [1833] [1834] [1835] [1836] Underfull \hbox (badness 1337) in paragraph at lines 32215--32219 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1837] [1838] [1839] [1840] [1841] [1842] [1843] [1844] Underfull \hbox (badness 1337) in paragraph at lines 32743--32747 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1845] [1846] [1847] Overfull \hbox (117.7803pt too wide) in paragraph at lines 32951--32951 []\T1/pcr/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] Overfull \hbox (74.58035pt too wide) in paragraph at lines 32953--32953 []\T1/pcr/m/n/9 wilcox.test((4:2)/10, (3:1)/10, paired=TRUE, digits.rank = 9) # same ties as (4:2, 3:1)[] [1848] [1849] Overfull \hbox (138.78088pt too wide) in paragraph at lines 33112--33112 [] \T1/pcr/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps = getOption("ts.eps"), ...)[] [1850] Overfull \hbox (0.78088pt too wide) in paragraph at lines 33197--33197 []\T1/pcr/m/n/10 xtabs(formula = ~., data = parent.frame(), subset, sparse = F ALSE, Overfull \hbox (0.78088pt too wide) in paragraph at lines 33199--33199 [] \T1/pcr/m/n/10 exclude = if(!addNA) c(NA, NaN), drop.unused.levels = F ALSE)[] [1851] [1852] [1853] [1854]) (./stats4-pkg.tex Chapter 11. [1855] [1856] [1857] Overfull \hbox (15.18042pt too wide) in paragraph at lines 224--224 [] \T1/pcr/m/n/9 -sum(stats::dpois(y, lambda = exp(lymax)/(1+x/exp(lxhalf)) , log = TRUE))[] Underfull \vbox (badness 10000) has occurred while \output is active [1858] Overfull \hbox (9.78043pt too wide) in paragraph at lines 278--278 []\T1/pcr/m/n/9 ## Boundary case: This works, but fails if limits are set clos er to 0 and 1[] [1859] [1860] [1861] [1862]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1863] [1864] [1865]) (./tcltk-pkg.tex [1866] Chapter 12. [1867] [1868] [1869] [1870] [1871] Overfull \hbox (36.7804pt too wide) in paragraph at lines 372--372 []\T1/pcr/m/n/9 ls(envir = .TkRoot$env, all.names = TRUE) # .Tcl.args put a ca llback ref in here[] [1872] [1873] Underfull \vbox (badness 10000) has occurred while \output is active [1874] Underfull \hbox (badness 1292) in paragraph at lines 683--690 []\T1/pcr/m/n/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-i ng any Tk or Tcl com-mand by sim-ply run-ning Underfull \vbox (badness 1603) has occurred while \output is active [1875] [1876] [1877] [1878] [1879] Underfull \vbox (badness 10000) has occurred while \output is active [1880] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1096--1096 []\T1/pcr/m/n/9 eval.txt <- function() eval(str2lang(tclvalue(tkget(txt.w, "0. 0", "end"))))[] [1881] [1882] [1883] [1884] [1885] Underfull \hbox (badness 1189) in paragraph at lines 1424--1427 [][][]\T1/pcr/m/n/10 select.list[][][] []\T1/ptm/m/n/10 (a text ver-sion ex-cep t on Win-dows and the ma-cOS GUI), [][][]\T1/pcr/m/n/10 menu[][][] []\T1/ptm/m/ n/10 (whose [1886]) (./tools-pkg.tex Chapter 13. [1887] Overfull \hbox (9.78043pt too wide) in paragraph at lines 69--69 []\T1/pcr/m/n/9 ## is used for simple print methods in R, and as prototype for new methods.[] [1888] Underfull \hbox (badness 1253) in paragraph at lines 167--170 []\T1/pcr/m/n/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing will be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1889] Overfull \hbox (4.38043pt too wide) in paragraph at lines 218--218 []\T1/pcr/m/n/9 assertCondition(ff(), "error", "warning") # ok (quietly, catch ing warning)[] [1890] Underfull \hbox (badness 5147) in paragraph at lines 326--339 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 Underfull \hbox (badness 4792) in paragraph at lines 326--339 \T1/ptm/m/n/10 types of bib-li-o-graphic en-try sup-ported by [][][]\T1/pcr/m/n /10 bibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou- Underfull \hbox (badness 2237) in paragraph at lines 326--339 \T1/ptm/m/n/10 tines de-scribed be-low. The for-mer must be named []\T1/pcr/m/n /10 formatArticle[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 formatBook[]\T1/ptm/m/n/10 , [1891] [1892] Overfull \hbox (42.78088pt too wide) in paragraph at lines 411--411 []\T1/pcr/m/n/10 buildVignette(file, dir = ".", weave = TRUE, latex = TRUE, ta ngle = TRUE, Underfull \hbox (badness 2460) in paragraph at lines 430--432 []\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gin e to use. Over-rides any [1893] Underfull \hbox (badness 1142) in paragraph at lines 502--506 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1894] [1895] [1896] [1897] [1898] [1899] [1900] Underfull \hbox (badness 1024) in paragraph at lines 913--920 \T1/ptm/m/n/10 by \T1/pcr/m/n/10 \donttest\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \dont diff \T1/ptm/m/n/10 or \T1/pcr/m/n/10 \dontshow\T1/ptm/m/n/10 , and \T1/pcr/m/n /10 \title \T1/ptm/m/n/10 re-placed by \T1/pcr/m/n/10 \section \T1/ptm/m/n/10 o r [1901] Overfull \hbox (0.78088pt too wide) in paragraph at lines 985--985 []\T1/pcr/m/n/10 resaveRdaFiles(paths, compress = c("auto", "gzip", "bzip2", " xz"),[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 1040--1040 []\T1/pcr/m/n/9 bad <- is.na(res$ASCII) | res$ASCII | (res$size > 1e4 & res$co mpress == "none")[] [1902] [1903] [1904] Overfull \hbox (12.78088pt too wide) in paragraph at lines 1210--1210 [] \T1/pcr/m/n/10 outputs = FALSE, sources = FALS E, ...)[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 1211--1211 []\T1/pcr/m/n/10 check_packages_in_dir_details(dir, logs = NULL, drop_ok = TRU E, ...)[] [1905] Underfull \hbox (badness 1014) in paragraph at lines 1258--1260 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1264--1266 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [1906] Underfull \hbox (badness 10000) in paragraph at lines 1301--1304 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us- Underfull \hbox (badness 10000) in paragraph at lines 1301--1304 \T1/ptm/m/n/10 ing []\T1/pcr/m/n/10 summarize_check_packages_in_dir_results []\ T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 1309--1312 []\T1/pcr/m/n/10 check_packages_in_dir []\T1/ptm/m/n/10 re-turns an ob-ject in- her-it-ing from class [1907] [1908] Underfull \hbox (badness 10000) in paragraph at lines 1456--1459 []\T1/pcr/m/n/10 codocClasses []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 codocData [ ]\T1/ptm/m/n/10 re-turn ob-jects of class []\T1/pcr/m/n/10 "codocClasses" []\T1 /ptm/m/n/10 and [1909] [1910] Underfull \hbox (badness 4647) in paragraph at lines 1639--1644 []\T1/pcr/m/n/10 CRAN_package_db() []\T1/ptm/m/n/10 re-turns a data frame with char-ac-ter columns con-tain-ing most Underfull \hbox (badness 7869) in paragraph at lines 1639--1644 \T1/ptm/m/n/10 `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' meta-data for the cu r-rent pack-ages in the CRAN pack-age repos-i- Underfull \hbox (badness 1681) in paragraph at lines 1639--1644 \T1/ptm/m/n/10 tory, in-clud-ing in par-tic-u-lar the De-scrip-tion and Main-ta iner in-for-ma-tion not pro-vided by [1911] Underfull \hbox (badness 10000) in paragraph at lines 1716--1726 []\T1/ptm/m/n/10 Functions []\T1/pcr/m/n/10 CRAN_current_db()[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 CRAN_aliases_db()[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 CRAN_rdx refs_db()[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1716--1726 []\T1/pcr/m/n/10 CRAN_authors_db() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 CRAN_a rchive_db() []\T1/ptm/m/n/10 (also used by []\T1/pcr/m/n/10 R CMD check[]\T1/pt m/m/n/10 ) Underfull \hbox (badness 4120) in paragraph at lines 1716--1726 \T1/ptm/m/n/10 use []\T1/pcr/m/n/10 R_CRAN_SRC []\T1/ptm/m/n/10 rather than []\ T1/pcr/m/n/10 R_CRAN_WEB[]\T1/ptm/m/n/10 . The mir-ror to be used is re-ported by [1912] [1913] Overfull \hbox (24.78088pt too wide) in paragraph at lines 1840--1840 [] \T1/pcr/m/n/10 utils::installed.packages(lib.loc, fields = "En hances"))[] Underfull \hbox (badness 7981) in paragraph at lines 1847--1855 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of Underfull \hbox (badness 10000) in paragraph at lines 1847--1855 []\T1/pcr/m/n/10 c("Depends", "Imports", "LinkingTo", "Suggests", Underfull \hbox (badness 1558) in paragraph at lines 1847--1855 \T1/pcr/m/n/10 "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string []\T1/pcr/m/n/1 0 "all" []\T1/ptm/m/n/10 is short-hand for that vec-tor, [1914] [1915] [1916] [1917] [1918]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.2102 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ig nored \relax l.2103 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1919] [1920] [1921] [1922] [1923] Underfull \hbox (badness 1142) in paragraph at lines 2439--2445 []\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 loadPkgRdMacros []\T1/ptm/m/n/10 func-tio n first looks for an []\T1/pcr/m/n/10 "RdMacros" []\T1/ptm/m/n/10 en-try in the pack-age [1924] Underfull \hbox (badness 2359) in paragraph at lines 2503--2510 []\T1/ptm/m/n/10 Package main-tain-ers can use these func-tions to em-ploy user and site spe-cific com-pi-la- Underfull \hbox (badness 1102) in paragraph at lines 2503--2510 \T1/ptm/m/n/10 tion set-tings also for com-pi-la-tions not us-ing \T1/phv/m/n/1 0 R\T1/ptm/m/n/10 's mech-a-nisms (in par-tic-u-lar, cus-tom com- Underfull \hbox (badness 4168) in paragraph at lines 2503--2510 \T1/ptm/m/n/10 pi-la-tions in sub-di-rec-to-ries of `\T1/pcr/m/n/10 src\T1/ptm/ m/n/10 '), e.g., by adding con-fig-ure code call-ing \T1/phv/m/n/10 R \T1/ptm/m /n/10 with [1925] Underfull \hbox (badness 1342) in paragraph at lines 2555--2561 \T1/ptm/m/n/10 This al-lows e.g. the trans-la-tions shipped in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.x.y to be up-dated to those cur-rently in Underfull \hbox (badness 10000) in paragraph at lines 2580--2587 []\T1/pcr/m/n/10 matchConcordance []\T1/ptm/m/n/10 con-verts from out-put lo-ca -tions to source lo-ca-tions. The [1926] Underfull \hbox (badness 1259) in paragraph at lines 2644--2647 []\T1/ptm/m/n/10 The de-fault method of []\T1/pcr/m/n/10 as.Rconcordance []\T1/ ptm/m/n/10 searches for strings match-ing the pat-tern of Underfull \hbox (badness 1648) in paragraph at lines 2648--2654 []\T1/pcr/m/n/10 followConcordance []\T1/ptm/m/n/10 is used when a file is tran s-formed more than once. The first Underfull \hbox (badness 1708) in paragraph at lines 2648--2654 \T1/ptm/m/n/10 trans-for-ma-tion records a con-cor-dance in the file which is r ead as []\T1/pcr/m/n/10 prevConcordance[]\T1/ptm/m/n/10 . [1927] [1928] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2776--2776 []\T1/pcr/m/n/10 package_dependencies(packages = NULL, db = NULL, which = "str ong", Underfull \hbox (badness 7981) in paragraph at lines 2791--2799 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of Underfull \hbox (badness 10000) in paragraph at lines 2791--2799 []\T1/pcr/m/n/10 c("Depends", "Imports", "LinkingTo", "Suggests", Underfull \hbox (badness 1558) in paragraph at lines 2791--2799 \T1/pcr/m/n/10 "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string []\T1/pcr/m/n/1 0 "all" []\T1/ptm/m/n/10 is short-hand for that vec-tor, Overfull \hbox (15.18042pt too wide) in paragraph at lines 2827--2827 []\T1/pcr/m/n/9 myPkgs <- c("MASS", "Matrix", "KernSmooth", "class", "cluster" , "codetools")[] [1929] Overfull \hbox (18.78088pt too wide) in paragraph at lines 2860--2860 [] \T1/pcr/m/n/10 align = TRUE, character_only = TRUE, include_declarations = TRUE)[] [1930] [1931] [1932] [1933] Overfull \hbox (0.78088pt too wide) in paragraph at lines 3158--3158 [] \T1/pcr/m/n/10 macros = file.path(R.home("share"), "Rd", "macros", "system. Rd"),[] [1934] Underfull \hbox (badness 2486) in paragraph at lines 3203--3211 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sion 3.2.0, User-d efined macros may be given in a sep-a-rate file us-ing [1935] Overfull \hbox (12.78088pt too wide) in paragraph at lines 3259--3259 [] \T1/pcr/m/n/10 stylesheet = file.path(R.home("doc"), "html", "R-nav .css"),[] Overfull \hbox (36.78088pt too wide) in paragraph at lines 3260--3260 [] \T1/pcr/m/n/10 hooks = list(pkg_href = function(pkg) sprintf("%s.ht ml", pkg)),[] Overfull \hbox (84.78088pt too wide) in paragraph at lines 3267--3267 [] \T1/pcr/m/n/10 mathjax_config = file.path(R.home("doc"), "html", "m athjax-config.js"),[] [1936] [1937] [1938] Overfull \hbox (0.78088pt too wide) in paragraph at lines 3527--3527 []\T1/pcr/m/n/10 checkDocFiles (package, dir, lib.loc = NULL, chkInternal = NULL) [1939] Overfull \hbox (0.78088pt too wide) in paragraph at lines 3531--3531 []\T1/pcr/m/n/10 checkRdContents (package, dir, lib.loc = NULL, chkInternal = NULL)[] [1940] [1941] [1942] Overfull \hbox (48.78088pt too wide) in paragraph at lines 3762--3762 [] \T1/pcr/m/n/10 fragment = FALSE, ..., writeEncoding = outputEncodin g != "UTF-8",[] [1943] Underfull \hbox (badness 1072) in paragraph at lines 3815--3817 []\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec- tor of links, as re-turned by [1944] [1945] [1946] [1947] [1948] Overfull \hbox (72.78088pt too wide) in paragraph at lines 4153--4153 [] \T1/pcr/m/n/10 macros = file.path(R.home("share"), "Rd", "macro s", "system.Rd"))[] Underfull \hbox (badness 5417) in paragraph at lines 4191--4201 []\T1/ptm/m/n/10 By de-fault, the tags \T1/pcr/m/n/10 \S3method\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \S4method\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \command\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \docType\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \email\T1/ptm/m/n/10 , [1949] [1950] [1951] [1952] [1953] Underfull \hbox (badness 4108) in paragraph at lines 4462--4469 []\T1/ptm/m/n/10 This func-tion starts the in-ter-nal HTTP server, which runs o n the loop-back in-ter-face [1954] Overfull \hbox (0.78088pt too wide) in paragraph at lines 4563--4563 [] \T1/pcr/m/n/10 types = c("examples", "tests", "vignett es"),[] [1955] Overfull \hbox (48.78088pt too wide) in paragraph at lines 4566--4566 []\T1/pcr/m/n/10 testInstalledBasic(scope = c("basic", "devel", "both", "inter net", "all"),[] Underfull \hbox (badness 10000) in paragraph at lines 4591--4593 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1956] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4650--4650 []\T1/pcr/m/n/9 (prio <- sapply(as.vector(pNms), packageDescription, fields = "Priority"))[] [1957] Underfull \hbox (badness 4954) in paragraph at lines 4715--4720 []\T1/ptm/m/n/10 On Unix-alikes, the de-fault op-tion for []\T1/pcr/m/n/10 texi 2dvi []\T1/ptm/m/n/10 is set from en-vi-ron-ment vari-able [1958] [1959] [1960] Overfull \hbox (20.58041pt too wide) in paragraph at lines 4917--4917 []\T1/pcr/m/n/9 toTitleCase("ensemble tool for predictions from species distri bution models")[] Overfull \hbox (128.58029pt too wide) in paragraph at lines 4921--4921 []\T1/pcr/m/n/9 toTitleCase("a small fox is jumping") # "a Small Fox is .." (the \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 a\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 may cha nge)% i.e. BUG[] Overfull \hbox (69.18036pt too wide) in paragraph at lines 4925--4925 []\T1/pcr/m/n/9 toTitleCase("asking -- \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 is a smal l fox jumping?\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ") # ".. -- Is a Small ..." (fi ne)[] [1961] [1962] Overfull \hbox (0.78088pt too wide) in paragraph at lines 5008--5008 [] \T1/pcr/m/n/10 "mac.binary", "win.binary"), verbose.level = as.integer(dry run),[] [1963] [1964] Underfull \hbox (badness 10000) in paragraph at lines 5192--5195 []\T1/ptm/m/n/10 optional char-ac-ter strings for the `[]\T1/pcr/m/n/10 Copyrig ht[]\T1/ptm/m/n/10 ' and [1965] Underfull \hbox (badness 6859) in paragraph at lines 5208--5213 []\T1/ptm/m/n/10 All ex-ist-ing files in di-rec-tory []\T1/pcr/m/n/10 po []\T1/ ptm/m/n/10 with names `\T1/pcr/m/n/10 R-\T1/ptm/m/sl/10 lang\T1/pcr/m/n/10 .po\ T1/ptm/m/n/10 ' are up-dated from Underfull \hbox (badness 1184) in paragraph at lines 5216--5222 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/pcr/m/n/10 po /\T1/ptm/m/sl/10 pkgname\T1/pcr/m/n/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. T he Underfull \hbox (badness 2941) in paragraph at lines 5216--5222 \T1/ptm/m/n/10 `\T1/pcr/m/n/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in t he pack-age are ex-am-ined to cre-ate a file [1966] Overfull \hbox (9.78043pt too wide) in paragraph at lines 5325--5325 []\T1/pcr/m/n/9 parse_URI_reference(c("foo://example.com:8042/over/there?name= ferret#nose",[] [1967] [1968] [1969] Underfull \hbox (badness 10000) in paragraph at lines 5521--5523 []\T1/ptm/m/n/10 the [][][]\T1/pcr/m/n/10 vignetteEngine[][][][]\T1/ptm/m/n/10 , such as []\T1/pcr/m/n/10 "utils::Sweave" []\T1/ptm/m/n/10 or [1970] Overfull \hbox (0.78088pt too wide) in paragraph at lines 5550--5550 [] \T1/pcr/m/n/10 verbose = FALSE, unpacked = FALSE, subdirs = F ALSE,[] Overfull \hbox (36.78088pt too wide) in paragraph at lines 5551--5551 [] \T1/pcr/m/n/10 latestOnly = TRUE, addFiles = FALSE, rds_compr ess = "xz",[] Underfull \hbox (badness 3240) in paragraph at lines 5564--5567 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T 1/pcr/m/n/10 PACKAGES\T1/ptm/m/n/10 ', Underfull \hbox (badness 1742) in paragraph at lines 5568--5578 []\T1/pcr/m/n/10 "Package"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Version"[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 "Priority"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Depe nds"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Imports"[]\T1/ptm/m/n/10 , [1971] Underfull \hbox (badness 1127) in paragraph at lines 5606--5612 []\T1/pcr/m/n/10 write_PACKAGES []\T1/ptm/m/n/10 scans the named di-rec-tory fo r R pack-ages, ex-tracts in-for-ma-tion from Underfull \hbox (badness 1635) in paragraph at lines 5606--5612 \T1/ptm/m/n/10 each pack-age's `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' file , and writes this in-for-ma-tion into the `\T1/pcr/m/n/10 PACKAGES\T1/ptm/m/n/1 0 ', Underfull \hbox (badness 1571) in paragraph at lines 5634--5638 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by Underfull \hbox (badness 2772) in paragraph at lines 5660--5665 \T1/ptm/m/n/10 and `\T1/pcr/m/n/10 PACKAGES.gz\T1/ptm/m/n/10 ' files. See [][][ ]\T1/pcr/m/n/10 update_PACKAGES[][][] []\T1/ptm/m/n/10 for ef-fi-ciently up-dat -ing ex-ist-ing [1972] [1973] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5798--5798 [] \T1/pcr/m/n/9 " stop(errorCondition(gettext(\TS1/pcr/m/n/9 '\T1/pcr/m/n /9 needs Deep Thought\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), class=\TS1/pcr/m/n/9 '\T1 /pcr/m/n/9 myError\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ))",[] [1974] [1975]) (./utils-pkg.tex [1976] Chapter 14. Underfull \hbox (badness 1072) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/pcr/m/n/10 insertions[]\T1/ptm/m/n/10 ', [1977] [1978] [1979] [1980] Overfull \hbox (4.38043pt too wide) in paragraph at lines 260--260 []\T1/pcr/m/n/9 find("cor", numeric = TRUE) # numbers with these names[] [1981] [1982] Underfull \hbox (badness 10000) in paragraph at lines 378--383 \T1/ptm/m/n/10 are []\T1/pcr/m/n/10 c("vertical", "horizontal", "cascade", "min imize", Underfull \hbox (badness 10000) in paragraph at lines 384--386 []\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 list[][][] []\T1/ptm/m/n/10 of win-dow han-dles, by de-fault pro-duced by [1983] Overfull \hbox (9.78043pt too wide) in paragraph at lines 450--450 []\T1/pcr/m/n/9 # This default is useful only in SDI mode: it will tile any F irefox window[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 452--452 []\T1/pcr/m/n/9 .arrangeWindowsDefaults <- list(c("R", "all"), pattern = c("", "Firefox"))[] Overfull \hbox (60.78088pt too wide) in paragraph at lines 469--469 [] \T1/pcr/m/n/10 prompts = getOption("askYesNo", gettext(c("Yes", "No ", "Cancel"))),[] [1984] [1985] [1986] Overfull \hbox (6.78088pt too wide) in paragraph at lines 691--691 []\T1/pcr/m/n/10 aspell_package_R_files(dir, ignore = character(), control = l ist(),[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 692--692 [] \T1/pcr/m/n/10 program = NULL, dictionaries = charact er())[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 693--693 []\T1/pcr/m/n/10 aspell_package_C_files(dir, ignore = character(), control = l ist(),[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 694--694 [] \T1/pcr/m/n/10 program = NULL, dictionaries = charact er())[] [1987] Underfull \hbox (badness 10000) in paragraph at lines 728--734 []\T1/ptm/m/n/10 Functions []\T1/pcr/m/n/10 aspell_package_Rd_files[]\T1/ptm/m/ n/10 , []\T1/pcr/m/n/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 4416) in paragraph at lines 728--734 []\T1/pcr/m/n/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 a spell_package_C_files []\T1/ptm/m/n/10 per-form spell check- [1988] Overfull \hbox (6.78088pt too wide) in paragraph at lines 797--797 [] \T1/pcr/m/n/10 fields = getOption("available_packages_fie lds"),[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 802--802 [] \T1/pcr/m/n/10 str2logical(Sys.getenv("R_PACKAGES_CAC HE_USER_DIR",[] Underfull \hbox (badness 10000) in paragraph at lines 842--845 [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 in-di-cat-ing if caching sh ould hap-pen in \T1/ptm/b/n/10 tools\T1/ptm/m/n/10 ' [1989] Underfull \hbox (badness 1552) in paragraph at lines 936--942 []\T1/ptm/m/n/10 A char-ac-ter ma-trix with one row per pack-age, row names the pack-age names and col- [1990] Overfull \hbox (31.3804pt too wide) in paragraph at lines 963--963 []\T1/pcr/m/n/9 db <- available.packages(repos = findCRANmirror("web"), filter s = "duplicates")[] [1991] Overfull \hbox (6.78088pt too wide) in paragraph at lines 1065--1065 []\T1/pcr/m/n/10 bibentry(bibtype, textVersion = NULL, header = NULL, footer = NULL, [1992] [1993] Underfull \hbox (badness 7649) in paragraph at lines 1139--1145 [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 in-di-cat-ing if Bib-TeX co de should be given ad-di-tion-ally; Underfull \hbox (badness 5533) in paragraph at lines 1139--1145 \T1/ptm/m/n/10 cur-rently ap-plies only to []\T1/pcr/m/n/10 style = "citation"[ ]\T1/ptm/m/n/10 . The de-fault for Underfull \hbox (badness 4739) in paragraph at lines 1139--1145 \T1/ptm/m/n/10 the []\T1/pcr/m/n/10 print() []\T1/ptm/m/n/10 method de-pends on the num-ber of (bib) en-tries and Underfull \hbox (badness 1215) in paragraph at lines 1139--1145 \T1/ptm/m/n/10 For ex-am-ple, to see no Bib-TeX at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1148--1150 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1994] Underfull \hbox (badness 10000) in paragraph at lines 1266--1269 []\T1/ptm/m/n/10 The DOI ([][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Digital _ Object _ [1995] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1349--1349 [] \T1/pcr/m/n/9 author = as.person("Anthony C. Davison [aut], David V. Hi nkley [aut]"),[] [1996] [1997] [1998] [1999] [2000] [2001] Underfull \hbox (badness 1859) in paragraph at lines 1758--1767 []\T1/ptm/m/n/10 For ex-am-ple, sup-pose that on a data set which you know to b e quite large the com- Underfull \hbox (badness 2042) in paragraph at lines 1758--1767 \T1/ptm/m/n/10 mand []\T1/pcr/m/n/10 data.frame(x, y, z, monday, tuesday) []\T1 /ptm/m/n/10 never re-turns. Do not re-port that [2002] [2003] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1863--1863 [] \T1/pcr/m/n/9 data = infert, family = b inomial())))[] [2004] Overfull \hbox (66.78088pt too wide) in paragraph at lines 1898--1898 []\T1/pcr/m/n/10 changedFiles(before, after, path = before$path, timestamp = b efore$timestamp,[] [2005] Overfull \hbox (20.58041pt too wide) in paragraph at lines 2044--2044 []\T1/pcr/m/n/9 snapshot <- fileSnapshot(dir, timestamp = tempfile("timestamp" ), md5sum=TRUE)[] [2006] Underfull \hbox (badness 2277) in paragraph at lines 2113--2118 []\T1/pcr/m/n/10 charClass []\T1/ptm/m/n/10 was added in \T1/phv/m/n/10 R \T1/p tm/m/n/10 4.1.0. A less di-rect way to ex-am-ine char-ac-ter classes [2007] Overfull \hbox (36.7804pt too wide) in paragraph at lines 2145--2145 []\T1/pcr/m/n/9 cl <- c("alnum", "alpha", "blank", "digit", "graph", "punct", "upper", "xdigit")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 2147--2147 []\T1/pcr/m/n/9 X <- as.data.frame(X); row.names(X) <- sQuote(intToUtf8(x, mul tiple = TRUE))[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2155--2155 []\T1/pcr/m/n/9 ## How many printable characters are there? (Around 280,000 in Unicode 13.)[] [2008] [2009] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2303--2303 []\T1/pcr/m/n/10 chooseBioCmirror(graphics = getOption("menu.graphics"), ind = NULL, [2010] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2355--2355 []\T1/pcr/m/n/10 chooseCRANmirror(graphics = getOption("menu.graphics"), ind = NULL, [2011] [2012] Underfull \hbox (badness 1117) in paragraph at lines 2481--2488 []\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/pcr/m/n/10 citation() []\T1/ ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print Underfull \hbox (badness 1400) in paragraph at lines 2481--2488 \T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I f a pack-age has more [2013] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2564--2564 []\T1/pcr/m/n/10 citeNatbib(keys, bib, textual = FALSE, before = NULL, after = NULL,[] [2014] [2015] Overfull \hbox (15.18042pt too wide) in paragraph at lines 2684--2684 [] \T1/pcr/m/n/9 author = as.person("Anthony C. Davison [aut], David V. Hi nkley [aut]"),[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 2724--2724 []\T1/pcr/m/n/10 citEntry(entry, textVersion = NULL, header = NULL, footer = N ULL, ...) [2016] Underfull \hbox (badness 1082) in paragraph at lines 2753--2757 [][][]\T1/pcr/m/n/10 citation[][][] []\T1/ptm/m/n/10 for more in-for-ma-tion ab out cit-ing R and R pack-ages and `\T1/pcr/m/n/10 CITATION\T1/ptm/m/n/10 ' file s; pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard }) has been already used, duplicate ignored \relax l.2758 ... the Clipboard in MS Windows}{clipboard} [2017] [2018] Underfull \hbox (badness 10000) in paragraph at lines 2882--2884 []\T1/ptm/m/n/10 Compiling in sup-port for sock-ets was op-tional prior to \T1/ phv/m/n/10 R \T1/ptm/m/n/10 3.3.0: see [2019] [2020] [2021] [2022] Underfull \hbox (badness 10000) in paragraph at lines 3103--3105 []\T1/ptm/m/n/10 character string, in-di-cat-ing which type of pack-ages: see [2023] [2024] [2025] [2026] Underfull \hbox (badness 1762) in paragraph at lines 3396--3399 []\T1/ptm/m/n/10 To just look in the `\T1/pcr/m/n/10 data\T1/ptm/m/n/10 ' di-re c-tory of the cur-rent work-ing di-rec-tory, set []\T1/pcr/m/n/10 package = [2027] Overfull \hbox (63.78036pt too wide) in paragraph at lines 3484--3484 []\T1/pcr/m/n/9 try(data(package = "rpart"), silent = TRUE) # list the data se ts in the rpart package[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3485--3485 []\T1/pcr/m/n/9 data(USArrests, "VADeaths") # load the data sets \TS1/pcr/m /n/9 '\T1/pcr/m/n/9 USArrests\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 and \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 VADeaths\TS1/pcr/m/n/9 '[] [2028] Underfull \hbox (badness 2452) in paragraph at lines 3559--3562 []\T1/ptm/m/n/10 The data en-try win-dow re-sponds to X re-sources of class []\ T1/pcr/m/n/10 R_dataentry[]\T1/ptm/m/n/10 . Re-sources [2029] [2030] [2031] [2032] [2033] [2034] Overfull \hbox (74.58035pt too wide) in paragraph at lines 3987--3987 [] \T1/pcr/m/n/9 DLL.version(file.path(R.home(), "library/stats/libs", .Platf orm$r_arch, "stats.dll"))[] [2035] [2036] Underfull \hbox (badness 4779) in paragraph at lines 4068--4073 []\T1/ptm/m/n/10 Support for method []\T1/pcr/m/n/10 "libcurl" []\T1/ptm/m/n/10 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use Underfull \hbox (badness 1072) in paragraph at lines 4131--4135 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/pcr/m/n/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [2037] Underfull \hbox (badness 7238) in paragraph at lines 4192--4197 []\T1/ptm/m/n/10 For the []\T1/pcr/m/n/10 "libcurl" []\T1/ptm/m/n/10 and []\T1/ pcr/m/n/10 "curl" []\T1/ptm/m/n/10 meth-ods, prox-ies can be set \T1/ptm/m/it/1 0 via \T1/ptm/m/n/10 the en-vi-ron- Underfull \hbox (badness 1337) in paragraph at lines 4192--4197 \T1/ptm/m/n/10 ment vari-ables []\T1/pcr/m/n/10 http_proxy []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 ftp_proxy[]\T1/ptm/m/n/10 . See [][]$\T1/pcr/m/n/10 https : / / curl . se / libcurl / c / Underfull \hbox (badness 1184) in paragraph at lines 4207--4223 \T1/ptm/m/n/10 string con-tain-ing `[]\T1/pcr/m/n/10 "Schannel"[]\T1/ptm/m/n/10 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron- [2038] [2039] Underfull \hbox (badness 4660) in paragraph at lines 4333--4336 \T1/ptm/m/n/10 able at the repos-i-to-ries, or []\T1/pcr/m/n/10 NULL []\T1/ptm/ m/n/10 which makes an in-ter-nal call to Underfull \hbox (badness 10000) in paragraph at lines 4357--4359 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/pcr/m/n/10 do wnload.file[][][] []\T1/ptm/m/n/10 and [2040] [2041] [2042] Underfull \hbox (badness 1565) in paragraph at lines 4544--4548 []\T1/ptm/m/n/10 Data frame columns are co-erced on in-put to \T1/ptm/m/it/10 c har-ac-ter \T1/ptm/m/n/10 un-less nu-meric (in the sense of [2043] Overfull \hbox (0.78088pt too wide) in paragraph at lines 4627--4627 [] \T1/pcr/m/n/10 character.only = FALSE, give.lines = FALSE, local = F ALSE,[] [2044] Underfull \hbox (badness 1910) in paragraph at lines 4662--4669 \T1/ptm/m/n/10 is saved, then ini-tial-ized to a spec-i-fied state, the ex-am-p le is run and Underfull \hbox (badness 1655) in paragraph at lines 4662--4669 \T1/ptm/m/n/10 the (saved) state is re-stored. []\T1/pcr/m/n/10 setRNG = TRUE [ ]\T1/ptm/m/n/10 sets the same state as Underfull \hbox (badness 2846) in paragraph at lines 4662--4669 []\T1/pcr/m/n/10 R CMD [][]check[][][] []\T1/ptm/m/n/10 does for run-ning a pac k-age's ex-am-ples. This is cur- Underfull \hbox (badness 3460) in paragraph at lines 4662--4669 \T1/ptm/m/n/10 rently equiv-a-lent to []\T1/pcr/m/n/10 setRNG = {RNGkind("defau lt", "default", Underfull \hbox (badness 1931) in paragraph at lines 4669--4676 []\T1/ptm/m/n/10 logical (or []\T1/pcr/m/n/10 "default"[]\T1/ptm/m/n/10 ) in-di -cat-ing if [][][]\T1/pcr/m/n/10 devAskNewPage[][][](ask = TRUE) [2045] [2046] [2047] [2048] Underfull \hbox (badness 5939) in paragraph at lines 4922--4924 []\T1/ptm/m/n/10 An en-try in []\T1/pcr/m/n/10 getOption("repos") []\T1/ptm/m/n /10 named `[]\T1/pcr/m/n/10 CRAN[]\T1/ptm/m/n/10 ' which is not the de-fault [2049] [2050] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5065--5065 []\T1/pcr/m/n/9 # Set a breakpoint in both copies of that function, assuming o ne is in the[] [2051]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.for mat}) has been already used, duplicate ignored \relax l.5136 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.5136 ...mat Unordered and Ordered Lists}{format} [2052] [2053] [2054] [2055] [2056] [2057] [2058] [2059] Underfull \hbox (badness 1622) in paragraph at lines 5659--5663 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2060] [2061] [2062] [2063] [2064] [2065] Underfull \hbox (badness 1448) in paragraph at lines 6044--6049 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2066] [2067] Overfull \hbox (96.78088pt too wide) in paragraph at lines 6193--6193 []\T1/pcr/m/n/10 ## NB: The methods for \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 data.f rame\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 and \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 array\ TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 are identical to the \TS1/pcr/m/n/10 '\T1/pcr/ m/n/10 matrix\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 one[] Overfull \hbox (66.78088pt too wide) in paragraph at lines 6205--6205 []\T1/pcr/m/n/10 tail(x, n = 6L, keepnums = TRUE, addrownums, ...) # exported as tail.matrix()[] [2068] [2069] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6347--6347 [] \T1/pcr/m/n/9 ## BUT if I use "useAttrib(.)", this is *not* ok, when n i s of length 2:[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 6348--6348 [] \T1/pcr/m/n/9 ## --- because [i,j]-indexing of data frames *also* drops "other" attributes ..[] [2070] [2071] [2072] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6558--6558 [] \T1/pcr/m/n/9 ## -> nicely formatted pdf -- including math formula -- for h elp(dgamma):[] [2073] Underfull \hbox (badness 10000) in paragraph at lines 6642--6644 []\T1/ptm/m/n/10 The post-ing guide ([][]$\T1/pcr/m/n/10 https : / / www . r-[] project . org / posting-[]guide . html$[][]\T1/ptm/m/n/10 ), also [2074] Underfull \hbox (badness 1502) in paragraph at lines 6691--6697 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6691--6697 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2075] [2076] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6812--6812 []\T1/pcr/m/n/9 help.search("linear models") # In case you forgot how to fit linear models[] Underfull \hbox (badness 10000) in paragraph at lines 6871--6880 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in- Underfull \hbox (badness 10000) in paragraph at lines 6871--6880 \T1/ptm/m/n/10 dex, `\T1/ptm/m/sl/10 R_DOC_DIR\T1/pcr/m/n/10 /html/packages.htm l\T1/ptm/m/n/10 ', which can be re-made by [2077] Underfull \hbox (badness 2150) in paragraph at lines 6933--6936 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2078] Underfull \hbox (badness 5175) in paragraph at lines 6949--6952 []\T1/pcr/m/n/10 hsearch_db() []\T1/ptm/m/n/10 builds and caches the help searc h database for sub-se-quent use by [2079] Underfull \hbox (badness 3118) in paragraph at lines 7072--7074 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2080] [2081] [2082] Underfull \hbox (badness 10000) in paragraph at lines 7277--7284 []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 means to use []\T1/pcr/m/n/10 c("Depends ", "Imports", "LinkingTo", Underfull \hbox (badness 10000) in paragraph at lines 7277--7284 \T1/pcr/m/n/10 "Suggests") []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pkgs []\T1/ptm /m/n/10 and []\T1/pcr/m/n/10 c("Depends", "Imports", Underfull \hbox (badness 1270) in paragraph at lines 7277--7284 \T1/pcr/m/n/10 "LinkingTo") []\T1/ptm/m/n/10 for added de-pen-den-cies: this in -stalls all the pack-ages Underfull \hbox (badness 1270) in paragraph at lines 7292--7302 \T1/ptm/m/n/10 for the `[]\T1/pcr/m/n/10 --configure-args[]\T1/ptm/m/n/10 ' fla g in the call to []\T1/pcr/m/n/10 R CMD INSTALL[]\T1/ptm/m/n/10 . If [2083] Underfull \hbox (badness 1975) in paragraph at lines 7334--7338 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be passed to []\T1/pcr/m/n/10 R Underfull \hbox (badness 4913) in paragraph at lines 7334--7338 \T1/pcr/m/n/10 CMD INSTALL []\T1/ptm/m/n/10 for a source pack-age in-stall. E.g ., []\T1/pcr/m/n/10 c("--html", Underfull \hbox (badness 10000) in paragraph at lines 7334--7338 \T1/pcr/m/n/10 "--no-multiarch", "--no-test-load") []\T1/ptm/m/n/10 or, for ma- cOS, Underfull \hbox (badness 1424) in paragraph at lines 7343--7346 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to Underfull \hbox (badness 10000) in paragraph at lines 7356--7360 []\T1/ptm/m/n/10 further ar-gu-ments to be passed to [][][]\T1/pcr/m/n/10 downl oad.file[][][][]\T1/ptm/m/n/10 , [2084] Underfull \hbox (badness 2376) in paragraph at lines 7424--7431 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/pcr/m/n /10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7424--7431 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7424--7431 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1087) in paragraph at lines 7432--7435 []\T1/ptm/m/n/10 Using pack-ages with []\T1/pcr/m/n/10 type = "source" []\T1/pt m/m/n/10 al-ways works pro-vided the pack-age con-tains no [2085] Underfull \hbox (badness 1314) in paragraph at lines 7505--7512 []\T1/pcr/m/n/10 install.packages []\T1/ptm/m/n/10 needs to be able to com-pute all the de-pen-den-cies of []\T1/pcr/m/n/10 pkgs []\T1/ptm/m/n/10 from [2086] Underfull \hbox (badness 10000) in paragraph at lines 7588--7593 [][][]\T1/pcr/m/n/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/ 10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 download.pac kages[][][][]\T1/ptm/m/n/10 , Overfull \hbox (25.98041pt too wide) in paragraph at lines 7611--7611 [] \T1/pcr/m/n/9 configure.args = c(RNetCDF = "--with-netcdf-include=/usr/inc lude/udunits2"))[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 7629--7629 [] \T1/pcr/m/n/10 str2logical(Sys.getenv("R_PACKAGES_CAC HE_USER_DIR",[] [2087] Underfull \hbox (badness 10000) in paragraph at lines 7650--7653 [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 in-di-cat-ing if caching sh ould hap-pen in \T1/ptm/b/n/10 tools\T1/ptm/m/n/10 ' Underfull \hbox (badness 5133) in paragraph at lines 7654--7658 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each pack-age's Underfull \hbox (badness 1983) in paragraph at lines 7668--7671 []\T1/pcr/m/n/10 installed.packages []\T1/ptm/m/n/10 scans the `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' files of each pack-age found along Overfull \hbox (9.78043pt too wide) in paragraph at lines 7715--7715 []\T1/pcr/m/n/9 plic <- installed.packages(.Library, priority = "high", fields = "License")[] [2088] Overfull \hbox (15.18042pt too wide) in paragraph at lines 7720--7720 []\T1/pcr/m/n/9 ## Keep packages that come with R (priority="high") and all ot hers separate![] [2089] [2090] Underfull \hbox (badness 4132) in paragraph at lines 7846--7848 []\T1/ptm/m/n/10 The ac-tual link-ing com-mand is con-structed by the ver-sion of []\T1/pcr/m/n/10 libtool []\T1/ptm/m/n/10 in-stalled at [2091] [2092] [2093] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8013--8013 []\T1/pcr/m/n/9 ls.str(mode = "list") #- what are the structured objects I h ave defined?[] [2094] [2095] Overfull \hbox (0.78088pt too wide) in paragraph at lines 8156--8156 []\T1/pcr/m/n/10 make.socket(host = "localhost", port, fail = TRUE, server = F ALSE) [2096] Underfull \hbox (badness 10000) in paragraph at lines 8196--8198 []\T1/ptm/m/n/10 Compiling in sup-port for sock-ets was op-tional prior to \T1/ phv/m/n/10 R \T1/ptm/m/n/10 3.3.0: see [2097] Overfull \hbox (36.78088pt too wide) in paragraph at lines 8288--8288 [] \T1/pcr/m/n/10 methods(generic.function, class, all.names = FALSE, dropPa th = FALSE)[] Overfull \hbox (132.78088pt too wide) in paragraph at lines 8290--8290 [] \T1/pcr/m/n/10 all.names = FALSE, dropPa th = FALSE, useEnv = FALSE)[] Underfull \hbox (badness 10000) in paragraph at lines 8303--8305 []\T1/ptm/m/n/10 a sym-bol or char-ac-ter string nam-ing a class: only used if Underfull \hbox (badness 10000) in paragraph at lines 8321--8323 []\T1/ptm/m/n/10 typically the re-sult of []\T1/pcr/m/n/10 methods(..)[]\T1/ptm /m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2098] [2099] [2100] [2101] Underfull \hbox (badness 1859) in paragraph at lines 8553--8556 []\T1/ptm/m/n/10 logical spec-i-fy-ing that the news should be opened in the br owser (by [2102] [2103] Overfull \hbox (25.98041pt too wide) in paragraph at lines 8681--8681 []\T1/pcr/m/n/9 db4 <- news(Version == "4.0.0" & grepl("^BUG", Category) & gre pl("PR#", Text),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8687--8687 []\T1/pcr/m/n/9 ## News from a date range (\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 Matri x\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 is there in a regular R installation):[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 8695--8695 []\T1/pcr/m/n/9 ## Which categories have been in use? % R-core maybe should st andardize a bit more[] [2104] Underfull \hbox (badness 1917) in paragraph at lines 8782--8784 []\T1/pcr/m/n/10 "B"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "KiB"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "MiB"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "GiB"[]\T1/ptm/m/n/1 0 , []\T1/pcr/m/n/10 "TiB"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "PiB"[]\T1/ptm/m/ n/10 , Underfull \hbox (badness 1331) in paragraph at lines 8790--8794 []\T1/ptm/m/n/10 For all stan-dards, []\T1/pcr/m/n/10 units = "auto" []\T1/ptm/ m/n/10 is also al-lowed. If []\T1/pcr/m/n/10 standard = [2105] [2106] [2107] Underfull \hbox (badness 7099) in paragraph at lines 8954--8959 []\T1/ptm/m/n/10 optionally a [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/ n/10 string with an en-cod-ing for an op-tional [2108] Overfull \hbox (66.78088pt too wide) in paragraph at lines 9056--9056 [] \T1/pcr/m/n/10 date.fields = c("Date", "Packaged", "Date/Publica tion", "Built"),[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 9057--9057 [] \T1/pcr/m/n/10 tryFormats = c("%Y-%m-%d", "%Y/%m/%d", "%D", "%m/ %d/%y"),[] Overfull \hbox (84.78088pt too wide) in paragraph at lines 9058--9058 [] \T1/pcr/m/n/10 desc = packageDescription(pkg, lib.loc=lib.loc, f ields=date.fields))[] [2109] Underfull \hbox (badness 10000) in paragraph at lines 9086--9088 []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 asDateBuilt()[]\T1/ptm/m/n/10 , a [][][]\ T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string as from Underfull \hbox (badness 10000) in paragraph at lines 9100--9102 []\T1/pcr/m/n/10 packageVersion() []\T1/ptm/m/n/10 is a con-ve-nience short-cut , al-low-ing things like []\T1/pcr/m/n/10 if Underfull \hbox (badness 1259) in paragraph at lines 9108--9113 []\T1/ptm/m/n/10 If a `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2110] Overfull \hbox (9.78043pt too wide) in paragraph at lines 9152--9152 [] \T1/pcr/m/n/9 identical(pu, packageDate("stats"))) # as "utils" an d "stats" are[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 9153--9153 [] \T1/pcr/m/n/9 # both \TS1/pcr/m/n/9 '\T1/ pcr/m/n/9 base R\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 and "Built" at same time[] [2111] [2112] Underfull \hbox (badness 10000) in paragraph at lines 9279--9284 []\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 "Status"[]\T1/ptm/m/n/10 , a fac-tor wit h lev-els []\T1/pcr/m/n/10 c("ok", "upgrade", Underfull \hbox (badness 10000) in paragraph at lines 9286--9289 []\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 "Status"[]\T1/ptm/m/n/10 , a fac-tor wit h lev-els []\T1/pcr/m/n/10 c("installed", "not [2113] [2114] Overfull \hbox (0.78088pt too wide) in paragraph at lines 9403--9403 [] \T1/pcr/m/n/10 include = c("given", "family", "email", "role", "comme nt"),[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 9404--9404 [] \T1/pcr/m/n/10 braces = list(given = "", family = "", email = c("<", ">"),[] [2115] [2116] Overfull \hbox (4.38043pt too wide) in paragraph at lines 9591--9591 [] \T1/pcr/m/n/9 "S original, "),[] [2117] [2118] [2119] Underfull \hbox (badness 1789) in paragraph at lines 9764--9766 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2120] [2121] [2122] [2123] Underfull \hbox (badness 2600) in paragraph at lines 9988--9991 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic; de-faults to [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] Overfull \hbox (30.78088pt too wide) in paragraph at lines 10611--10611 [] \T1/pcr/m/n/10 dec = ".", numerals = c("allow.loss", "warn.loss", " no.loss"),[] [2132] [2133] Overfull \hbox (20.58041pt too wide) in paragraph at lines 10772--10772 []\T1/pcr/m/n/9 dd <- read.DIF(file.path(udir, "exDIF.dif"), header = TRUE, tr anspose = TRUE)[] [2134] [2135] [2136] Overfull \hbox (4.38043pt too wide) in paragraph at lines 10953--10953 []\T1/pcr/m/n/9 read.fwf(ff, widths = list(c(1,0, 2,3), c(2,2,2))) #> 1 NA 23 456 98 76 54[] [2137] Overfull \hbox (42.78088pt too wide) in paragraph at lines 11039--11039 [] \T1/pcr/m/n/10 dec = ".", numerals = c("allow.loss", "warn.loss", "no.loss"),[] [2138] Overfull \hbox (72.78088pt too wide) in paragraph at lines 11040--11040 [] \T1/pcr/m/n/10 row.names, col.names, as.is = !stringsAsFactors, t ryLogical = TRUE,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 11042--11042 [] \T1/pcr/m/n/10 skip = 0, check.names = TRUE, fill = !blank.lines. skip,[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 11047--11047 [] \T1/pcr/m/n/10 fileEncoding = "", encoding = "unknown", text, ski pNul = FALSE)[] [2139] Underfull \hbox (badness 2027) in paragraph at lines 11119--11122 []\T1/ptm/m/n/10 Using []\T1/pcr/m/n/10 row.names = NULL []\T1/ptm/m/n/10 force s row num-ber-ing. Miss-ing or []\T1/pcr/m/n/10 NULL Underfull \hbox (badness 2435) in paragraph at lines 11142--11146 []\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 de-ter-m in-ing if columns con-sist-ing en-tirely of []\T1/pcr/m/n/10 "F"[]\T1/ptm/m/n/1 0 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1824) in paragraph at lines 11142--11146 []\T1/pcr/m/n/10 "FALSE"[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 "TRUE" []\T1/pt m/m/n/10 should be con-verted to [][][]\T1/pcr/m/n/10 logical[][][][]\T1/ptm/m/ n/10 ; passed to [2140] [2141] [2142] Overfull \hbox (12.78088pt too wide) in paragraph at lines 11404--11404 []\T1/pcr/m/n/10 readRegistry(key, hive = c("HLM", "HCR", "HCU", "HU", "HCC", "HPD"), Overfull \hbox (6.78088pt too wide) in paragraph at lines 11405--11405 [] \T1/pcr/m/n/10 maxdepth = 1, view = c("default", "32-bit", "64- bit"))[] Underfull \hbox (badness 10000) in paragraph at lines 11412--11417 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are Underfull \hbox (badness 10000) in paragraph at lines 11412--11417 \T1/ptm/m/n/10 for []\T1/pcr/m/n/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/ pcr/m/n/10 HKEY_CLASSES_ROOT[]\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 11412--11417 []\T1/pcr/m/n/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 HKEY_USER S[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 HKEY_CURRENT_CONFIG [2143] [2144] [2145] [2146] Overfull \hbox (18.78088pt too wide) in paragraph at lines 11644--11644 [] \T1/pcr/m/n/10 ipar <- list(mean = c(0, 1), vcov = c bind(c(1, 1), c (1, 0))) [2147] [2148] [2149] [2150] Underfull \hbox (badness 2469) in paragraph at lines 11910--11914 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2024). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 10000) in paragraph at lines 11910--11914 [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = [2151] Overfull \hbox (25.98041pt too wide) in paragraph at lines 11928--11928 []\T1/pcr/m/n/9 as.roman(c(NA, 1:3, "", strrep("I", 1:7))) # + NA with a warni ng for the last.[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 11933--11933 []\T1/pcr/m/n/9 ## simple consistency checks -- arithmetic when result is in {1,2,..,4999} :[] [2152] [2153] Overfull \hbox (18.78088pt too wide) in paragraph at lines 12087--12087 []\T1/pcr/m/n/10 4. | \-base:::tryCatchOne(expr, names, parentenv, handler s[[1L]])[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 12088--12088 []\T1/pcr/m/n/10 5. | \-base:::doTryCatch(return(expr), name, parentenv, handler)[] [2154] Underfull \hbox (badness 10000) in paragraph at lines 12190--12192 []\T1/ptm/m/n/10 The chap-ter on ``Tidy-ing and pro-fil-ing R code'' in `Writ-i ng R Ex-ten-sions': [2155] Overfull \hbox (0.78088pt too wide) in paragraph at lines 12223--12223 []\T1/pcr/m/n/10 Rprofmem(filename = "Rprofmem.out", append = FALSE, threshold = 0) [2156] [2157] Underfull \hbox (badness 1917) in paragraph at lines 12356--12359 []\T1/ptm/m/n/10 If `[]\T1/pcr/m/n/10 --default-packages[]\T1/ptm/m/n/10 ' is n ot used, then []\T1/pcr/m/n/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-me nt vari- Underfull \hbox (badness 4328) in paragraph at lines 12356--12359 \T1/ptm/m/n/10 able []\T1/pcr/m/n/10 R_SCRIPT_DEFAULT_PACKAGES[]\T1/ptm/m/n/10 . If this is set, then it takes prece-dence over Overfull \hbox (106.98032pt too wide) in paragraph at lines 12379--12379 []\T1/pcr/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 sessionInfo()\TS1/pcr/m/n/9 '[] [2158] Overfull \hbox (54.78088pt too wide) in paragraph at lines 12471--12471 [] \T1/pcr/m/n/10 restrict = c("functions", "descriptions", "news", "Rfunctions",[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 12472--12472 [] \T1/pcr/m/n/10 "Rmanuals", "READMEs", "views", "vig nettes"),[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 12474--12474 [] \T1/pcr/m/n/10 sortby = c("score", "date:late", "date:early", "s ubject",[] [2159] Overfull \hbox (36.78088pt too wide) in paragraph at lines 12475--12475 [] \T1/pcr/m/n/10 "subject:descending", "size", "size:de scending"),[] Underfull \hbox (badness 6725) in paragraph at lines 12498--12506 \T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 score[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 date: late []\T1/ptm/m/n/10 for sort-ing by date with lat-est re-sults first, Underfull \hbox (badness 2662) in paragraph at lines 12498--12506 \T1/ptm/m/n/10 der, []\T1/pcr/m/n/10 subject:descending []\T1/ptm/m/n/10 for re -verse al-pha-bet-i-cal or-der, []\T1/pcr/m/n/10 size []\T1/ptm/m/n/10 or [2160] Overfull \hbox (9.78043pt too wide) in paragraph at lines 12543--12543 []\T1/pcr/m/n/9 fullquery <- RSiteSearch("lattice", restrict = c("vignettes"," Rfunctions"))[] Underfull \hbox (badness 1377) in paragraph at lines 12599--12602 []\T1/ptm/m/n/10 Character string spec-i-fy-ing whether emacs style ([]\T1/pcr/ m/n/10 "etags"[]\T1/ptm/m/n/10 ) or vi style [2161] Underfull \hbox (badness 3646) in paragraph at lines 12634--12636 [][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p tm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / www . gnu . org / software / Overfull \hbox (30.78088pt too wide) in paragraph at lines 12672--12672 [] \T1/pcr/m/n/10 split = FALSE, quiet = FALSE, drop.evalFALSE = F ALSE, ...)[] [2162] [2163] [2164] Underfull \hbox (badness 10000) in paragraph at lines 12854--12858 []\T1/ptm/m/n/10 The de-fault for []\T1/pcr/m/n/10 stylepath []\T1/ptm/m/n/10 i s now taken from the en-vi-ron-ment vari-able [2165] Underfull \hbox (badness 10000) in paragraph at lines 12887--12893 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a Underfull \hbox (badness 2027) in paragraph at lines 12902--12908 []\T1/ptm/m/n/10 The use of fancy quotes (see [][][]\T1/pcr/m/n/10 sQuote[][][] []\T1/ptm/m/n/10 ) can cause prob-lems when set-ting \T1/phv/m/n/10 R \T1/ptm/m /n/10 out-put in [2166] [2167] Overfull \hbox (6.78088pt too wide) in paragraph at lines 13059--13059 [] \T1/pcr/m/n/10 units = "in", type = "quartz", bg = "transpa rent")[] Underfull \hbox (badness 1009) in paragraph at lines 13077--13089 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If Underfull \hbox (badness 2600) in paragraph at lines 13117--13119 []\T1/ptm/m/n/10 The file `\T1/pcr/m/n/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ures the R GUI ([]\T1/pcr/m/n/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows and [2168] Underfull \hbox (badness 1043) in paragraph at lines 13160--13165 []\T1/ptm/m/n/10 At the time of writ-ing `\T1/pcr/m/n/10 Rdevga\T1/ptm/m/n/10 ' con-fig-ured the map-ping of font num-bers to fonts, and [2169] [2170] [2171] [2172] [2173] Underfull \hbox (badness 10000) in paragraph at lines 13479--13482 []\T1/ptm/m/n/10 (not al-ways present): a named list of the re-sults of call-in g Underfull \hbox (badness 10000) in paragraph at lines 13482--13485 []\T1/ptm/m/n/10 (not al-ways present): a named list of the re-sults of call-in g [2174] Overfull \hbox (9.78043pt too wide) in paragraph at lines 13528--13528 []\T1/pcr/m/n/9 toLatex(sI, locale = FALSE) # shortest; possibly desirable at end of report[] Underfull \hbox (badness 2158) in paragraph at lines 13590--13593 []\T1/ptm/m/n/10 Repository `[]\T1/pcr/m/n/10 CRAN[]\T1/ptm/m/n/10 ' is treated spe-cially: the value is taken from the cur-rent set-ting of [2175] Overfull \hbox (0.78088pt too wide) in paragraph at lines 13643--13643 []\T1/pcr/m/n/10 setWindowTitle(suffix, title = paste(getIdentification(), suf fix)) [2176] [2177] Underfull \hbox (badness 2302) in paragraph at lines 13800--13802 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2178] [2179] Underfull \hbox (badness 3333) in paragraph at lines 13908--13910 []\T1/pcr/m/n/10 getSrcFilename []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 getSrcDir ectory []\T1/ptm/m/n/10 re-turn char-ac-ter vec-tors hold-ing the file- [2180] [2181] [2182] Overfull \hbox (42.78088pt too wide) in paragraph at lines 14075--14075 [] \T1/pcr/m/n/10 format(x, trim = TRUE, drop0trailing = TRUE, ...))[] Underfull \hbox (badness 5970) in paragraph at lines 14108--14111 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive Underfull \hbox (badness 2600) in paragraph at lines 14108--14111 [][][]\T1/pcr/m/n/10 options[][][]("width")[]\T1/ptm/m/n/10 ; note that this ha s only a weak ef-fect, un-less Underfull \hbox (badness 1052) in paragraph at lines 14119--14128 []\T1/ptm/m/n/10 (see [][][]\T1/pcr/m/n/10 options[][][][]\T1/ptm/m/n/10 ) whic h de-faults to []\T1/pcr/m/n/10 "no" []\T1/ptm/m/n/10 for back com-pat-i-bil-it y rea-sons; [2183] Underfull \hbox (badness 1442) in paragraph at lines 14135--14139 []\T1/ptm/m/n/10 numeric or []\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 as by de-fau lt, de-ter-min-ing the []\T1/pcr/m/n/10 nlines []\T1/ptm/m/n/10 ar-gu-ment to Overfull \hbox (36.7804pt too wide) in paragraph at lines 14181--14181 []\T1/pcr/m/n/9 str(.Machine, digits.d = 20) # extra digits for identification of binary numbers[] [2184] Overfull \hbox (15.18042pt too wide) in paragraph at lines 14208--14208 []\T1/pcr/m/n/9 ## Truncation behavior (<-> correct width measurement) for "lo ng" non-ASCII:[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 14215--14215 []\T1/pcr/m/n/9 ## nchar.max: 1st line needs an increase of 2 in order to se e 1 (in UTF-8!):[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 14217--14217 []\T1/pcr/m/n/9 invisible(lapply(60:66, function(N) str( ch , nchar.max = N))) # "1 is 1" here[] [2185] [2186] [2187] Underfull \hbox (badness 10000) in paragraph at lines 14382--14384 []\T1/ptm/m/n/10 Options other than []\T1/pcr/m/n/10 memory = "none" []\T1/ptm/ m/n/10 ap-ply only to files pro-duced by Underfull \hbox (badness 10000) in paragraph at lines 14428--14430 []\T1/ptm/m/n/10 The chap-ter on `Tidy-ing and pro-fil-ing R code' in `Writ-ing R Ex-ten-sions': [2188] Underfull \hbox (badness 10000) in paragraph at lines 14491--14494 []\T1/ptm/m/n/10 further ar-gu-ments passed to the driver's setup func-tion. Se e Underfull \hbox (badness 1389) in paragraph at lines 14491--14494 [][][]\T1/pcr/m/n/10 RweaveLatexSetup[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/ m/n/10 RtangleSetup[][][][]\T1/ptm/m/n/10 , re-spec-tively, for the ar-gu- [2189] Underfull \hbox (badness 6300) in paragraph at lines 14539--14546 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fau lt) then the avail-able syn-tax ob-jects are con-sulted in Underfull \hbox (badness 6252) in paragraph at lines 14539--14546 \T1/ptm/m/n/10 turn, and se-lected if their []\T1/pcr/m/n/10 extension []\T1/pt m/m/n/10 com-po-nent matches (as a reg-exp) the file Underfull \hbox (badness 4556) in paragraph at lines 14539--14546 \T1/ptm/m/n/10 name. Ob-jects []\T1/pcr/m/n/10 SweaveSyntaxNoweb []\T1/ptm/m/n/ 10 (with []\T1/pcr/m/n/10 extension = "[.][rsRS]nw$"[]\T1/ptm/m/n/10 ) and [2190] [2191] Underfull \hbox (badness 2020) in paragraph at lines 14704--14710 \T1/ptm/m/n/10 si-bly use-ful val-ues in-clude `[]\T1/pcr/m/n/10 -h[]\T1/ptm/m/ n/10 ' (fol-low sym-bolic links, also `[]\T1/pcr/m/n/10 -L[]\T1/ptm/m/n/10 ' on some plat-forms), Underfull \hbox (badness 1194) in paragraph at lines 14704--14710 \T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 --acls[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 -- exclude-backups[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 --exclude-vcs[]\T1/ptm/m/n /10 ' (and sim-i-lar) and on Win-dows [2192] Underfull \hbox (badness 1622) in paragraph at lines 14711--14718 []\T1/ptm/m/n/10 A con-ve-nient and ro-bust way to set op-tions for GNU []\T1/p cr/m/n/10 tar []\T1/ptm/m/n/10 is via en-vi-ron-ment vari-able [2193] Underfull \hbox (badness 5022) in paragraph at lines 14867--14871 []\T1/ptm/m/n/10 When ar-gu-ment []\T1/pcr/m/n/10 tar []\T1/ptm/m/n/10 is set t o the com-mand []\T1/pcr/m/n/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-able [2194] Underfull \hbox (badness 10000) in paragraph at lines 14874--14877 [][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ f ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / pubs . Underfull \hbox (badness 10000) in paragraph at lines 14874--14877 \T1/pcr/m/n/10 opengroup . org / onlinepubs / 9699919799 / utilities / pax . ht ml # tag _ 20 _ 92 _ [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] Overfull \hbox (6.78088pt too wide) in paragraph at lines 15493--15493 [] \T1/pcr/m/n/10 instPkgs = installed.packages(lib.loc = lib.loc, ...),[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 15499--15499 [] \T1/pcr/m/n/10 instPkgs = installed.packages(lib.loc = lib.loc, ...),[] [2203] Underfull \hbox (badness 4660) in paragraph at lines 15536--15540 \T1/ptm/m/n/10 able at the repos-i-to-ries, or []\T1/pcr/m/n/10 NULL []\T1/ptm/ m/n/10 which makes an in-ter-nal call to Underfull \hbox (badness 1694) in paragraph at lines 15550--15554 []\T1/ptm/m/n/10 by de-fault all in-stalled pack-ages, [][][]\T1/pcr/m/n/10 ins talled.packages[][][](lib.loc = Underfull \hbox (badness 10000) in paragraph at lines 15556--15561 []\T1/ptm/m/n/10 Arguments such as []\T1/pcr/m/n/10 destdir []\T1/ptm/m/n/10 an d []\T1/pcr/m/n/10 dependencies []\T1/ptm/m/n/10 to be Underfull \hbox (badness 10000) in paragraph at lines 15556--15561 \T1/ptm/m/n/10 passed to [][][]\T1/pcr/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 and []\T1/pcr/m/n/10 ignore_repo_cache[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15556--15561 []\T1/pcr/m/n/10 max_repo_cache_age []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 noCac he []\T1/ptm/m/n/10 to [][][]\T1/pcr/m/n/10 available.packages[][][] Underfull \hbox (badness 1052) in paragraph at lines 15562--15564 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2204] Underfull \hbox (badness 10000) in paragraph at lines 15592--15597 []\T1/pcr/m/n/10 available = NULL []\T1/ptm/m/n/10 make a call to []\T1/pcr/m/n /10 available.packages(contriburl = Underfull \hbox (badness 1226) in paragraph at lines 15592--15597 \T1/pcr/m/n/10 contriburl, method = method) []\T1/ptm/m/n/10 and hence by de-fa ult fil-ters on \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sion, OS type Underfull \hbox (badness 10000) in paragraph at lines 15613--15618 []\T1/ptm/m/n/10 Take care when us-ing []\T1/pcr/m/n/10 dependencies []\T1/ptm/ m/n/10 (passed to [][][]\T1/pcr/m/n/10 install.packages[][][][]\T1/ptm/m/n/10 ) with Underfull \hbox (badness 10000) in paragraph at lines 15621--15624 [][][]\T1/pcr/m/n/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n /10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 download.pa ckages[][][][]\T1/ptm/m/n/10 , [2205] Overfull \hbox (15.18042pt too wide) in paragraph at lines 15698--15698 []\T1/pcr/m/n/9 ## Not run: url.show("https://www.stats.ox.ac.uk/pub/datasets/ csb/ch3a.txt") [2206] [2207] [2208] Underfull \hbox (badness 4832) in paragraph at lines 15899--15902 [][][]\T1/pcr/m/n/10 browseVignettes[][][] []\T1/ptm/m/n/10 for an HTML-based v i-gnette browser; [][][]\T1/pcr/m/n/10 RShowDoc[][][]("\T1/ptm/m/sl/10 basename \T1/pcr/m/n/10 ", [2209] Overfull \hbox (42.18039pt too wide) in paragraph at lines 15915--15915 []\T1/pcr/m/n/9 ## Note that \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 package = *\TS1/pcr /m/n/9 ' \T1/pcr/m/n/9 is much faster in the case of many installed packages:[] [2210] Overfull \hbox (4.38043pt too wide) in paragraph at lines 15982--15982 [] \T1/pcr/m/n/9 lm(weight ~ (Time + I(Time^2)) * Diet, d ata = DAT)))[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 16004--16004 [] \T1/pcr/m/n/9 nls(weight ~ SSlogis(Time, Asym, xmid, scal), data = DD)))[] [2211] [2212] Underfull \hbox (badness 1297) in paragraph at lines 16136--16138 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the ac-tion when that menu i s se-lected, or [2213] Underfull \hbox (badness 4036) in paragraph at lines 16183--16185 []\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 winMenuDel []\T1/ptm/m/n/10 func-tion wil l delete a menu and all of its items and sub-menus. [2214] [2215] Overfull \hbox (0.78088pt too wide) in paragraph at lines 16303--16303 []\T1/pcr/m/n/10 write.table(x, file = "", append = FALSE, quote = TRUE, sep = " ", [2216] Underfull \hbox (badness 1715) in paragraph at lines 16355--16358 []\T1/ptm/m/n/10 arguments to []\T1/pcr/m/n/10 write.table[]\T1/ptm/m/n/10 : [] \T1/pcr/m/n/10 append[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 col.names[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 sep[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 dec []\T1/ptm/m/n /10 and Underfull \hbox (badness 10000) in paragraph at lines 16400--16402 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion e.g. []\T1/pcr/m/n/10 file = [2217] [2218] [2219]) [2220] [2221] [2222] (./KernSmooth-pkg.tex Chapter 15. [2223] Overfull \hbox (24.78088pt too wide) in paragraph at lines 123--123 []\T1/pcr/m/n/10 bkde2D(x, bandwidth, gridsize = c(51L, 51L), range.x, truncat e = TRUE) [2224] [2225] [2226] [2227] [2228] Overfull \hbox (18.78088pt too wide) in paragraph at lines 518--518 []\T1/pcr/m/n/10 dpill(x, y, blockmax = 5, divisor = 20, trim = 0.01, proptrun = 0.05, [2229] [2230] [2231] [2232]) (./MASS-pkg.tex Chapter 16. [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] [2241] [2242] [2243] Overfull \hbox (20.58041pt too wide) in paragraph at lines 774--774 []\T1/pcr/m/n/9 dreg <- cbind(sin = sin(2*pi*beav2$hours/24), cos = cos(2*pi*b eav2$hours/24))[] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252] [2253]pdfTeX war ning (ext4): destination with the same identifier (name{Rfn.confint.glm}) has b een already used, duplicate ignored \relax l.1477 ...{confint.glm}{confint-MASS}{confint.glm} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.confint.nls}) has been already used, d uplicate ignored \relax l.1478 ...{confint.nls}{confint-MASS}{confint.nls} [2254] [2255] [2256] [2257] [2258] [2259] [2260] [2261] [2262] [2263] [2264] [2265] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2328--2328 []\T1/pcr/m/n/10 dropterm(object, scope, scale = 0, test = c("none", "Chisq", "F"),[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2332--2332 []\T1/pcr/m/n/10 dropterm(object, scope, scale = 0, test = c("none", "Chisq", "F"),[] [2266] [2267] [2268] [2269] Underfull \hbox (badness 6559) in paragraph at lines 2616--2619 []\T1/ptm/m/n/10 further ar-gu-ments for []\T1/pcr/m/n/10 plot []\T1/ptm/m/n/10 and graph-i-cal pa-ram-e-ters. Note that [2270] [2271] [2272] Underfull \hbox (badness 10000) in paragraph at lines 2790--2795 []\T1/pcr/m/n/10 "gamma"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "geometric"[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 "log-normal"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lo gnormal"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2790--2795 []\T1/pcr/m/n/10 "logistic"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "negative binomi al"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "normal"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n /10 "Poisson"[]\T1/ptm/m/n/10 , [2273] [2274] Underfull \hbox (badness 4686) in paragraph at lines 2962--2964 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2275] [2276] [2277] Overfull \hbox (18.78088pt too wide) in paragraph at lines 3162--3162 [] \T1/pcr/m/n/10 eps.max = .Machine$double.eps^0.25, verbose = FAL SE, ...)[] [2278] [2279] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3292--3292 []\T1/pcr/m/n/9 survreg(Surv(time, cens) ~ factor(pair) + treat, gehan, dist = "exponential")[] [2280] [2281] [2282] [2283] [2284] [2285] [2286] [2287] [2288] [2289] [2290] Underfull \hbox (badness 1845) in paragraph at lines 4091--4093 []\T1/ptm/m/n/10 The va-ri-ety of bar-ley ([]\T1/pcr/m/n/10 "manchuria"[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 "svansota"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "velv et"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "trebi" []\T1/ptm/m/n/10 and [2291] [2292] [2293] [2294] [2295] [2296] [2297] Overfull \hbox (0.78088pt too wide) in paragraph at lines 4585--4585 [] \T1/pcr/m/n/10 col = 5, xlab = deparse(substitute(data)), bty = "n", ...)[] [2298] [2299] [2300] Overfull \hbox (18.78088pt too wide) in paragraph at lines 4807--4807 []\T1/pcr/m/n/10 lm.ridge(formula, data, subset, na.action, lambda = 0, model = FALSE, [2301] [2302] [2303] [2304] [2305] [2306] [2307] [2308] [2309] [2310] [2311] [2312] [2313] [2314] Overfull \hbox (42.78088pt too wide) in paragraph at lines 5864--5864 []\T1/pcr/m/n/10 mvrnorm(n = 1, mu, Sigma, tol = 1e-6, empirical = FALSE, EISP ACK = FALSE) [2315] Overfull \hbox (48.78088pt too wide) in paragraph at lines 5925--5925 []\T1/pcr/m/n/10 negative.binomial(theta = stop("\TS1/pcr/m/n/10 '\T1/pcr/m/n/ 10 theta\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 must be specified"), link = "log") [2316] [2317]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.npk}) has been already used, duplicate ignored \relax l.6085 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica te ignored \relax l.6085 ...sical N, P, K Factorial Experiment}{npk} [2318] [2319] [2320] [2321] [2322] [2323] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6504--6504 [] \T1/pcr/m/n/9 start = list(fixed=c(L75=c(48.7, -0.03), lsc=0.24)), verb ose = TRUE)))[] [2324] Overfull \hbox (18.78088pt too wide) in paragraph at lines 6592--6592 [] \T1/pcr/m/n/10 dimen, abbrev = FALSE, ..., cex=0.7, type = c("std", "tr ellis"))[] [2325] [2326] [2327] [2328] [2329] Overfull \hbox (24.78088pt too wide) in paragraph at lines 6979--6979 [] \T1/pcr/m/n/10 method = c("logistic", "probit", "loglog", "cloglog", "c auchit"))[] [2330] Underfull \hbox (badness 3138) in paragraph at lines 7057--7063 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2331] Overfull \hbox (9.78043pt too wide) in paragraph at lines 7127--7127 []\T1/pcr/m/n/9 house.plr <- polr(Sat ~ Infl + Type + Cont, weights = Freq, da ta = housing)[] [2332] [2333] Underfull \hbox (badness 1389) in paragraph at lines 7236--7239 []\T1/ptm/m/n/10 the di-men-sion of the space to be used. If this is less than []\T1/pcr/m/n/10 min(p, [2334] [2335] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7366--7366 []\T1/pcr/m/n/9 fm <- lqs(stack.loss ~ ., data = stackloss, method = "S", nsam p = "exact")[] [2336] Overfull \hbox (24.78088pt too wide) in paragraph at lines 7431--7431 [] \T1/pcr/m/n/10 method = c("plug-in", "predictive", "debiased", "looC V"), ...)[] [2337]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.pro file.glm}) has been already used, duplicate ignored \relax l.7513 ... for Profiling glm Objects}{profile.glm} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.profile.glm.1}) has been already used, duplicate ignored \relax l.7513 ... for Profiling glm Objects}{profile.glm} [2338] [2339] [2340] [2341] Underfull \hbox (badness 4686) in paragraph at lines 7808--7810 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2342] [2343] Overfull \hbox (6.78088pt too wide) in paragraph at lines 7927--7927 [] \T1/pcr/m/n/10 maxit = 20, acc = 1e-4, test.vec = "resid", lqs.control = NULL)[] Underfull \hbox (badness 1590) in paragraph at lines 7951--7955 []\T1/ptm/m/n/10 A func-tion to spec-ify the ac-tion to be taken if []\T1/pcr/m /n/10 NA[]\T1/ptm/m/n/10 s are found. The [2344] [2345] [2346] [2347] [2348] [2349] [2350] [2351] [2352] [2353] [2354] [2355] [2356] [2357] [2358] [2359] [2360] [2361] [2362] [2363] Overfull \hbox (12.78088pt too wide) in paragraph at lines 9331--9331 []\T1/pcr/m/n/10 summary(object, method = c("XtX", "XtWX"), correlation = FALS E, ...)[] [2364] Underfull \hbox (badness 2035) in paragraph at lines 9443--9445 []\T1/ptm/m/n/10 ``Fold your arms! Which is on top'' (Fac-tor, with lev-els []\ T1/pcr/m/n/10 "R on L"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "L on R"[]\T1/ptm/m/n /10 , Underfull \hbox (badness 1158) in paragraph at lines 9458--9461 []\T1/ptm/m/n/10 how much the stu-dent smokes. (Fac-tor, lev-els []\T1/pcr/m/n/ 10 "Heavy"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Regul" []\T1/ptm/m/n/10 (reg-u-l arly), [2365] Overfull \hbox (42.78088pt too wide) in paragraph at lines 9540--9540 []\T1/pcr/m/n/10 theta.md(y, mu, dfr, weights, limit = 20, eps = .Machine$doub le.eps^0.25) Overfull \hbox (30.78088pt too wide) in paragraph at lines 9542--9542 []\T1/pcr/m/n/10 theta.ml(y, mu, n, weights, limit = 10, eps = .Machine$double .eps^0.25,[] Overfull \hbox (42.78088pt too wide) in paragraph at lines 9545--9545 []\T1/pcr/m/n/10 theta.mm(y, mu, dfr, weights, limit = 10, eps = .Machine$doub le.eps^0.25)[] [2366] [2367] [2368] [2369] [2370] Underfull \hbox (badness 2951) in paragraph at lines 9905--9907 []\T1/ptm/m/n/10 The orig-i-nal data are avail-able at [][]$\T1/pcr/m/n/10 http s : / / lib . stat . cmu . edu / datasets / 1993 . [2371] [2372] [2373] [2374] [2375] [2376] [2377] [2378]) (./Matrix-pkg.tex Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 35--38 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 35--38 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2379] Underfull \hbox (badness 1769) in paragraph at lines 89--92 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2380] Underfull \hbox (badness 2229) in paragraph at lines 153--156 []\T1/ptm/m/n/10 in gen-eral an ar-bi-trary num-ber of \T1/phv/m/n/10 R \T1/ptm /m/n/10 ob-jects; here, when the first is Underfull \hbox (badness 1147) in paragraph at lines 153--156 \T1/ptm/m/n/10 an []\T1/pcr/m/n/10 "[][]abIndex[][][]" []\T1/ptm/m/n/10 vec-tor , these ar-gu-ments will be con-cate-nated to a new pdfTeX warning (ext4): destination with the same identifier (name{Rfn.all.equal }) has been already used, duplicate ignored \relax l.182 ...{all.equal}{all.equal-methods}{all.equal} Underfull \hbox (badness 10000) in paragraph at lines 209--212 []\T1/ptm/m/n/10 these three meth-ods are sim-ply us-ing Underfull \hbox (badness 10000) in paragraph at lines 215--217 []\T1/ptm/m/n/10 There are more meth-ods, no-tably also for []\T1/pcr/m/n/10 "[ ][]sparseVector[][][]"[]\T1/ptm/m/n/10 's, see [2381] Underfull \hbox (badness 3098) in paragraph at lines 264--266 []\T1/ptm/m/n/10 optional ar-gu-ments passed to the de-fault method for generic func-tion [2382] [2383] Overfull \hbox (15.18042pt too wide) in paragraph at lines 452--452 [] \T1/pcr/m/n/9 band(sm5, -1, 1)# "dsyMatrix": symmetric band preserves sym metry property[] [2384] Underfull \hbox (badness 5119) in paragraph at lines 492--496 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class Underfull \hbox (badness 1668) in paragraph at lines 496--501 [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string, one of []\T1/pcr/ m/n/10 "C"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 , or []\T1/pc r/m/n/10 "R"[]\T1/ptm/m/n/10 , spec-i-fy-ing the sparse Overfull \hbox (4.38043pt too wide) in paragraph at lines 527--527 []\T1/pcr/m/n/9 s1 <- bandSparse(13, k = -c(0:2, 6), diag = c(diags, diags[2]) , symm=TRUE)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 529--529 []\T1/pcr/m/n/9 s2 <- bandSparse(13, k = c(0:2, 6), diag = c(diags, diags[2]) , symm=TRUE)[] [2385] Overfull \hbox (36.7804pt too wide) in paragraph at lines 538--538 []\T1/pcr/m/n/9 lLis <- lapply(list(rpois(20, 2), rpois(20, 1), rpois(20, 3))[ c(1:3, 2:3, 3:2)],[] [2386] Overfull \hbox (52.98038pt too wide) in paragraph at lines 654--654 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 Fast version of Matrix :: .bd iag() -- for the case of *many* (k x k) matrices:[] [2387] Overfull \hbox (96.18033pt too wide) in paragraph at lines 655--655 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 @param lmat list(, , ....., ) where each mat_j is a k x k \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 matrix\TS1/pcr/m/n/9 '[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 656--656 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 @return a sparse (N*k x N*k) matrix of class \code{"\linkS4class{dgCMatrix}"}.[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 669--669 [] \T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 i :\TS1/pcr/m/n/9 ' \ T1/pcr/m/n/9 maybe there\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s a faster way (w/o matri x indexing), but elegant?[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 670--670 [] \T1/pcr/m/n/9 i = as.vector(matrix(0L:(M-1L), nrow=k)[, rep(seq_len( N), each=k)]),[] [2388] Overfull \hbox (9.78043pt too wide) in paragraph at lines 837--837 []\T1/pcr/m/n/9 L. <- L; L.[1:2,1] <- TRUE; L.@x[1:2] <- FALSE; L. # has "zero s" to drop0()[] [2389] Underfull \hbox (badness 1635) in paragraph at lines 919--924 []\T1/pcr/m/n/10 new("pBunchKaufman", ...)[]\T1/ptm/m/n/10 , but they are more typ-i-cally ob-tained as the value of Underfull \hbox (badness 10000) in paragraph at lines 929--932 []\T1/pcr/m/n/10 signature(from = "BunchKaufman", to = "dtrMatrix")[]\T1/ptm/m/ n/10 : re-turns a Underfull \hbox (badness 10000) in paragraph at lines 932--935 []\T1/pcr/m/n/10 signature(from = "pBunchKaufman", to = "dtpMatrix")[]\T1/ptm/m /n/10 : re-turns a Underfull \hbox (badness 10000) in paragraph at lines 935--938 []\T1/pcr/m/n/10 signature(from = "p?BunchKaufman", logarithm = [2390] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1008--1008 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m atrix"), ...)[] [2391] Underfull \hbox (badness 10000) in paragraph at lines 1081--1086 []\T1/ptm/m/n/10 An ob-ject rep-re-sent-ing the fac-tor-iza-tion, in-her-it-ing from vir-tual class [2392] Overfull \hbox (3.02814pt too wide) in paragraph at lines 1137--1137 []\T1/pcr/m/n/9 stopifnot(all.equal(as(A, "matrix"), as(Reduce(\TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 %*%\TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 , e.bk.A), "matrix")))[] [2393]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.cbi nd2.Rdash.methods}) has been already used, duplicate ignored \relax l.1185 ... on cbind2/rbind2}{cbind2.Rdash.methods} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.cbind2}) has been already used, duplic ate ignored \relax l.1186 \aliasA{cbind2}{cbind2-methods}{cbind2} pdfTeX warning (ext4): destinatio n with the same identifier (name{Rfn.rbind2}) has been already used, duplicate ignored \relax l.1195 \aliasA{rbind2}{cbind2-methods}{rbind2} pdfTeX warning (ext4): destinatio n with the same identifier (name{Rfn.rbind2.Rdash.methods}) has been already us ed, duplicate ignored \relax l.1204 ...s}{cbind2-methods}{rbind2.Rdash.methods} [2394] Underfull \hbox (badness 10000) in paragraph at lines 1267--1272 []\T1/ptm/m/n/10 Our class def-i-ni-tion help pages men-tion-ing []\T1/pcr/m/n/ 10 cbind2() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 rbind2() []\T1/ptm/m/n/10 met h-ods: Underfull \hbox (badness 10000) in paragraph at lines 1322--1329 []\T1/ptm/m/n/10 The im-ple-men-ta-tion of class []\T1/pcr/m/n/10 CHMfactor []\ T1/ptm/m/n/10 is based on CHOLMOD's C-level [2395] [2396] Underfull \hbox (badness 5008) in paragraph at lines 1484--1499 []\T1/pcr/m/n/10 signature(from = "CHMfactor", logarithm = "logical")[]\T1/ptm/ m/n/10 : be- [2397] Underfull \hbox (badness 10000) in paragraph at lines 1534--1536 []\T1/pcr/m/n/10 signature(update = ., C = ., object = "CHMfactor")[]\T1/ptm/m/ n/10 : see Underfull \hbox (badness 1917) in paragraph at lines 1542--1546 []\T1/ptm/m/n/10 The CHOLMOD source code; see [][]$\T1/pcr/m/n/10 https : / / g ithub . com / DrTimothyAldenDavis / Underfull \hbox (badness 8132) in paragraph at lines 1542--1546 \T1/pcr/m/n/10 SuiteSparse$[][]\T1/ptm/m/n/10 , no-tably the header file `\T1/p cr/m/n/10 CHOLMOD/Include/cholmod.h\T1/ptm/m/n/10 ' defin-ing [2398] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1592--1592 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m atrix"), ...)[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1600--1600 [] \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list( NULL), dn[2L]),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1609--1609 [] \T1/pcr/m/n/9 ae2(A[ch.A@perm + 1L, ch.A@perm + 1L], with(e.ch.A, L1 %*% D %*% L1.))[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1610--1610 [] \T1/pcr/m/n/9 ae2(A[ch.A@perm + 1L, ch.A@perm + 1L], with(E.ch.A, L %*% L. ))[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1620--1620 []\T1/pcr/m/n/9 u2 <- update(ch.A, t(M), mult = sqrt(2)) # updating with cross prod(M), not M[] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol}) ha s been already used, duplicate ignored \relax l.1625 \aliasA{chol}{chol-methods}{chol} [2399] Underfull \hbox (badness 10000) in paragraph at lines 1730--1734 \T1/pcr/m/n/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 htt ps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and Underfull \hbox (badness 1917) in paragraph at lines 1735--1739 []\T1/ptm/m/n/10 The CHOLMOD source code; see [][]$\T1/pcr/m/n/10 https : / / g ithub . com / DrTimothyAldenDavis / Underfull \hbox (badness 8132) in paragraph at lines 1735--1739 \T1/pcr/m/n/10 SuiteSparse$[][]\T1/ptm/m/n/10 , no-tably the header file `\T1/p cr/m/n/10 CHOLMOD/Include/cholmod.h\T1/ptm/m/n/10 ' defin-ing [2400] [2401]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.chol2inv}) has been already used, duplicate ignored \relax l.1854 ...sA{chol2inv}{chol2inv-methods}{chol2inv} [2402] [2403] Underfull \hbox (badness 1931) in paragraph at lines 1990--1995 []\T1/ptm/m/n/10 a nu-meric vec-tor of length []\T1/pcr/m/n/10 n*n []\T1/ptm/m/ n/10 ([]\T1/pcr/m/n/10 Cholesky[]\T1/ptm/m/n/10 ) or []\T1/pcr/m/n/10 n*(n+1)/2 []\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 pCholesky[]\T1/ptm/m/n/10 ), where Underfull \hbox (badness 1226) in paragraph at lines 2005--2008 []\T1/ptm/m/n/10 Class [][][]\T1/pcr/m/n/10 CholeskyFactorization[][][][]\T1/pt m/m/n/10 , di-rectly. Class [][][]\T1/pcr/m/n/10 MatrixFactorization[][][][]\T1 /ptm/m/n/10 , by class Underfull \hbox (badness 3000) in paragraph at lines 2011--2019 []\T1/ptm/m/n/10 Objects can be gen-er-ated di-rectly by calls of the form []\T 1/pcr/m/n/10 new("Cholesky", ...) []\T1/ptm/m/n/10 or Underfull \hbox (badness 10000) in paragraph at lines 2028--2032 []\T1/pcr/m/n/10 signature(from = "pCholesky", to = "dtpMatrix")[]\T1/ptm/m/n/1 0 : re-turns a Underfull \hbox (badness 10000) in paragraph at lines 2032--2035 []\T1/pcr/m/n/10 signature(from = "p?Cholesky", logarithm = "logical")[]\T1/ptm /m/n/10 : [2404] Underfull \hbox (badness 10000) in paragraph at lines 2066--2070 \T1/pcr/m/n/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 htt ps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and [2405] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2113--2113 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m atrix"), ...)[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 2121--2121 [] \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list( NULL), dn[2L]),[] [2406] Underfull \hbox (badness 10000) in paragraph at lines 2252--2259 []\T1/ptm/m/n/10 a [][]fi-nite[][][] num-ber. The ma-trix that is fac-tor-ized is []\T1/pcr/m/n/10 A + Imult * Underfull \hbox (badness 1946) in paragraph at lines 2252--2259 \T1/pcr/m/n/10 - diag(abs(A))) []\T1/ptm/m/n/10 en-sures that []\T1/pcr/m/n/10 A + Imult * diag(nrow(A)) []\T1/ptm/m/n/10 is di- [2407] Underfull \hbox (badness 10000) in paragraph at lines 2299--2312 []\T1/ptm/m/n/10 An ob-ject rep-re-sent-ing the fac-tor-iza-tion, in-her-it-ing from vir-tual class Underfull \hbox (badness 10000) in paragraph at lines 2315--2319 \T1/pcr/m/n/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 htt ps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and Underfull \hbox (badness 1917) in paragraph at lines 2320--2324 []\T1/ptm/m/n/10 The CHOLMOD source code; see [][]$\T1/pcr/m/n/10 https : / / g ithub . com / DrTimothyAldenDavis / Underfull \hbox (badness 8132) in paragraph at lines 2320--2324 \T1/pcr/m/n/10 SuiteSparse$[][]\T1/ptm/m/n/10 , no-tably the header file `\T1/p cr/m/n/10 CHOLMOD/Include/cholmod.h\T1/ptm/m/n/10 ' defin-ing [2408] [2409] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2437--2437 [] \T1/pcr/m/n/9 list(simpl1 = Cholesky(A4, perm = TRUE, super = FALSE, L DL = TRUE),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2438--2438 [] \T1/pcr/m/n/9 simpl0 = Cholesky(A4, perm = TRUE, super = FALSE, L DL = FALSE),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2439--2439 [] \T1/pcr/m/n/9 super0 = Cholesky(A4, perm = TRUE, super = TRUE )),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2441--2441 [] \T1/pcr/m/n/9 list(simpl1 = Cholesky(A4, perm = FALSE, super = FALSE, L DL = TRUE),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2442--2442 [] \T1/pcr/m/n/9 simpl0 = Cholesky(A4, perm = FALSE, super = FALSE, L DL = FALSE),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2443--2443 [] \T1/pcr/m/n/9 super0 = Cholesky(A4, perm = FALSE, super = TRUE )))[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 2447--2447 []\T1/pcr/m/n/9 rapply2 <- function(object, f, ...) rapply(object, f, , , how = "list", ...)[] Underfull \vbox (badness 10000) has occurred while \output is active [2410] Overfull \hbox (42.18039pt too wide) in paragraph at lines 2514--2514 [] \T1/pcr/m/n/9 x = c(1, 6, 38, 10, 60, 103, -4, 6, -32, -247, -2, - 16, -128, -2, -67))[] Underfull \vbox (badness 10000) has occurred while \output is active [2411] Overfull \hbox (20.58041pt too wide) in paragraph at lines 2610--2610 [] \T1/pcr/m/n/9 show(a1 <- sparseMatrix(i= c(1:4), j=c(2:4,1), x = 2, dimnames=dns))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 2614--2614 [] \T1/pcr/m/n/9 show(a2 <- sparseMatrix(i= c(1:4,4), j=c(2:4,1:2), x = TRUE, dimnames=dns))[] [2412] Overfull \hbox (15.18042pt too wide) in paragraph at lines 2621--2621 [] \T1/pcr/m/n/9 a. <- sparseMatrix(i=4:1, j=1:4, dimnames=list(n4, n4), repr ="T") # no \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 x\TS1/pcr/m/n/9 '[] [2413]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col Means}) has been already used, duplicate ignored \relax l.2696 ...asA{colMeans}{colSums-methods}{colMeans} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colSums}) has been already used, dupli cate ignored \relax l.2704 \aliasA{colSums}{colSums-methods}{colSums} pdfTeX warning (ext4): destina tion with the same identifier (name{Rfn.rowMeans}) has been already used, dupli cate ignored \relax l.2711 ...asA{rowMeans}{colSums-methods}{rowMeans} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.rowSums}) has been already used, dupli cate ignored \relax l.2719 \aliasA{rowSums}{colSums-methods}{rowSums} Underfull \hbox (badness 2922) in paragraph at lines 2771--2775 []\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sparse, i.e., i n-her-it-ing from Underfull \hbox (badness 1728) in paragraph at lines 2771--2775 \T1/ptm/m/n/10 class [][][]\T1/pcr/m/n/10 sparseVector[][][][]\T1/ptm/m/n/10 . Only ap-pli-ca-ble when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 is in-her-it-ing fr om a Underfull \hbox (badness 1237) in paragraph at lines 2782--2785 [][][]\T1/pcr/m/n/10 dimnames[][][](x) []\T1/ptm/m/n/10 are only kept (as [][][ ]\T1/pcr/m/n/10 names[][][](v)[]\T1/ptm/m/n/10 ) when the re-sult-ing []\T1/pcr /m/n/10 v []\T1/ptm/m/n/10 is [][][]\T1/pcr/m/n/10 numeric[][][][]\T1/ptm/m/n/1 0 , since [2414] [2415] Underfull \hbox (badness 3547) in paragraph at lines 2888--2891 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2416] [2417] [2418] [2419] [2420] Underfull \hbox (badness 10000) in paragraph at lines 3290--3293 []\T1/pcr/m/n/10 signature(from = "denseLU", logarithm = "logical")[]\T1/ptm/m/ n/10 : com- [2421] Overfull \hbox (9.78043pt too wide) in paragraph at lines 3345--3345 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m atrix"), ...)[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 3352--3352 [] \T1/pcr/m/n/9 new( "pMatrix", Dim = c(n, n), Dimnames = c(dn[ 1L], list(NULL)),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3355--3355 [] \T1/pcr/m/n/9 new("dtrMatrix", Dim = c(n, n), Dimnames = list( NULL, NULL),[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 3358--3358 [] \T1/pcr/m/n/9 new("dtrMatrix", Dim = c(n, n), Dimnames = c(lis t(NULL), dn[2L]),[] [2422] Underfull \hbox (badness 7379) in paragraph at lines 3486--3488 []\T1/pcr/m/n/10 signature(x = "dgCMatrix")[]\T1/ptm/m/n/10 : com-putes the LU de-com-po-si-tion of a square [2423] [2424] [2425] Underfull \hbox (badness 4846) in paragraph at lines 3707--3711 []\T1/ptm/m/n/10 Note that both []\T1/pcr/m/n/10 new(.) []\T1/ptm/m/n/10 and [] [][]\T1/pcr/m/n/10 spMatrix[][][] []\T1/ptm/m/n/10 con-struc-tors for []\T1/pcr /m/n/10 "dgTMatrix" []\T1/ptm/m/n/10 (and other Underfull \hbox (badness 2717) in paragraph at lines 3712--3716 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in more than one pos-si-ble [2426] Underfull \hbox (badness 5231) in paragraph at lines 3757--3762 []\T1/ptm/m/n/10 Construct a for-mally di-ag-o-nal [][][]\T1/pcr/m/n/10 Matrix[ ][][][]\T1/ptm/m/n/10 , i.e., an ob-ject in-her-it-ing from vir-tual class Overfull \hbox (84.78088pt too wide) in paragraph at lines 3768--3768 []\T1/pcr/m/n/10 .sparseDiagonal(n, x = NULL, uplo = "U", shape = "t", unitri = TRUE, kind, cols)[] [2427] Underfull \hbox (badness 10000) in paragraph at lines 3824--3827 []\T1/pcr/m/n/10 .trDiagonal() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 .symDiagon al() []\T1/ptm/m/n/10 are sim-ple wrap-pers, for Underfull \hbox (badness 6792) in paragraph at lines 3824--3827 []\T1/pcr/m/n/10 .sparseDiagonal(shape = "t") []\T1/ptm/m/n/10 and []\T1/pcr/m/ n/10 .sparseDiagonal(shape = "s")[]\T1/ptm/m/n/10 , re-spec- [2428] Underfull \hbox (badness 3646) in paragraph at lines 3901--3904 []\T1/ptm/m/n/10 the [][][]\T1/pcr/m/n/10 dimnames[][][][]\T1/ptm/m/n/10 , a [] [][]\T1/pcr/m/n/10 list[][][][]\T1/ptm/m/n/10 , see the [][][]\T1/pcr/m/n/10 Ma trix[][][] []\T1/ptm/m/n/10 class de-scrip-tion. Typ-i-cally Underfull \hbox (badness 6542) in paragraph at lines 3936--3940 []\T1/pcr/m/n/10 signature(x = "diagonalMatrix")[]\T1/ptm/m/n/10 : all these gr oup meth-ods re-turn a Underfull \hbox (badness 4518) in paragraph at lines 3945--3951 []\T1/pcr/m/n/10 signature(e1 = "ddiMatrix", e2="denseMatrix")[]\T1/ptm/m/n/10 : the re-sult is from class [2429] Underfull \hbox (badness 10000) in paragraph at lines 3952--3956 []\T1/pcr/m/n/10 (object = "diagonalMatrix")[]\T1/ptm/m/n/10 : Re-turns an ob-j ect of S3 class Underfull \hbox (badness 2318) in paragraph at lines 3962--3966 [][][]\T1/pcr/m/n/10 Diagonal[][][]() []\T1/ptm/m/n/10 as con-struc-tor of thes e ma-tri-ces, and [][][]\T1/pcr/m/n/10 isDiagonal[][][][]\T1/ptm/m/n/10 . [][][ ]\T1/pcr/m/n/10 ddiMatrix[][][] []\T1/ptm/m/n/10 and [2430] [2431] [2432] Underfull \hbox (badness 10000) in paragraph at lines 4219--4221 []\T1/pcr/m/n/10 signature(x = "dMatrix", digits = "numeric")[]\T1/ptm/m/n/10 : this group con-tains [2433] [2434] Overfull \hbox (69.18036pt too wide) in paragraph at lines 4360--4360 []\T1/pcr/m/n/9 stopifnot(all.equal(S9p0, S9p))# same as as default, but diffe rent from the random one[] [2435] Underfull \hbox (badness 2469) in paragraph at lines 4474--4477 []\T1/pcr/m/n/10 signature(x = "dpoMatrix")[]\T1/ptm/m/n/10 : Re-turns the [][] []\T1/pcr/m/n/10 determinant[][][] []\T1/ptm/m/n/10 of []\T1/pcr/m/n/10 x[]\T1/ ptm/m/n/10 , via [2436] Underfull \hbox (badness 10000) in paragraph at lines 4497--4502 []\T1/ptm/m/n/10 Currently the va-lid-ity meth-ods for these classes such as Underfull \hbox (badness 2020) in paragraph at lines 4497--4502 [][][]\T1/pcr/m/n/10 getValidity[][][](getClass("dpoMatrix")) []\T1/ptm/m/n/10 for ef-fi-ciency rea-sons only check the di- Underfull \hbox (badness 1748) in paragraph at lines 4503--4512 \T1/pcr/m/n/10 error=identity), "error") []\T1/ptm/m/n/10 . In-deed, when \T1/p tm/m/it/10 co-erc-ing \T1/ptm/m/n/10 to these classes, a ver-sion Underfull \hbox (badness 1590) in paragraph at lines 4503--4512 \T1/ptm/m/n/10 of [][][]\T1/pcr/m/n/10 Cholesky[][][]() []\T1/ptm/m/n/10 or [][ ][]\T1/pcr/m/n/10 chol[][][]() []\T1/ptm/m/n/10 is typ-i-cally used, e.g., see []\T1/pcr/m/n/10 selectMethod("coerce", Underfull \hbox (badness 6675) in paragraph at lines 4559--4566 []\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 Matrix[][][][]\T1/ptm/m/n/10 , typ-i-ca lly in-her-it-ing from vir-tual class [][][]\T1/pcr/m/n/10 sparseMatrix[][][][] \T1/ptm/m/n/10 . Underfull \hbox (badness 6493) in paragraph at lines 4559--4566 [][][]\T1/pcr/m/n/10 denseMatrix[][][] []\T1/ptm/m/n/10 and tra-di-tional vec-t ors and ma-tri-ces are co-erced to [2437] Underfull \hbox (badness 10000) in paragraph at lines 4574--4582 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing if the re-sult must in-herit from vi r-tual class Underfull \hbox (badness 1365) in paragraph at lines 4574--4582 [][][]\T1/pcr/m/n/10 CsparseMatrix[][][][]\T1/ptm/m/n/10 . If []\T1/pcr/m/n/10 FALSE []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 in-her-its from [][][]\T1/pcr/m/n/10 RsparseMatrix[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4597--4600 []\T1/ptm/m/n/10 Function [][][]\T1/pcr/m/n/10 sparseMatrix[][][][]\T1/ptm/m/n/ 10 , for con-struct-ing ob-jects in-her-it-ing from vir-tual class [2438] Underfull \hbox (badness 10000) in paragraph at lines 4641--4645 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form []\T1/pcr/m/n/10 new("dsCMatrix", ...) []\T1/ptm/m/n/10 or Underfull \hbox (badness 2103) in paragraph at lines 4641--4645 []\T1/pcr/m/n/10 new("dsTMatrix", ...)[]\T1/ptm/m/n/10 , or au-to-mat-i-cally v ia e.g., []\T1/pcr/m/n/10 as(*, "symmetricMatrix")[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1571) in paragraph at lines 4691--4694 []\T1/pcr/m/n/10 signature(x = "dsCMatrix", pivot = "logical")[]\T1/ptm/m/n/10 : Re-turns (and stores) the [2439] [2440] Underfull \hbox (badness 1221) in paragraph at lines 4834--4837 []\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "dMatrix"[]\T1/ptm/m/n/10 , by class [] \T1/pcr/m/n/10 "dsparseMatrix"[]\T1/ptm/m/n/10 ; class []\T1/pcr/m/n/10 "sparse Matrix"[]\T1/ptm/m/n/10 , by classes Underfull \hbox (badness 1400) in paragraph at lines 4844--4847 []\T1/pcr/m/n/10 signature(x = "dsRMatrix", uplo = "character")[]\T1/ptm/m/n/10 : if []\T1/pcr/m/n/10 uplo == [2441] Underfull \hbox (badness 10000) in paragraph at lines 4896--4898 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form []\T1/pcr/m/n/10 new("dsyMatrix", ...) []\T1/ptm/m/n/10 or Underfull \hbox (badness 1365) in paragraph at lines 4932--4935 []\T1/pcr/m/n/10 signature(x = "dspMatrix", type = "character")[]\T1/ptm/m/n/10 , or []\T1/pcr/m/n/10 x = "dsyMatrix" [2442] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4978--4978 []\T1/pcr/m/n/9 stopifnot(all(S1 == S2)) # equal "seen as matrix", but differ internally :[] [2443] [2444] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5084--5084 []\T1/pcr/m/n/9 U5 <- new("dtCMatrix", i= c(1L, 0:3), p=c(0L,0L,0:2, 5L), Dim = c(5L, 5L),[] Underfull \hbox (badness 3635) in paragraph at lines 5139--5143 []\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ddenseMatrix"[]\T1/ptm/m/n/10 , di-rec tly. Class []\T1/pcr/m/n/10 "triangularMatrix"[]\T1/ptm/m/n/10 , di-rectly. Cla ss Underfull \hbox (badness 10000) in paragraph at lines 5148--5151 []\T1/pcr/m/n/10 signature(x = "dtpMatrix", y = "dgeMatrix")[]\T1/ptm/m/n/10 : Ma-trix mul-ti-pli-ca-tion; Underfull \hbox (badness 10000) in paragraph at lines 5151--5155 []\T1/pcr/m/n/10 signature(x = "dtpMatrix", logarithm = "logical")[]\T1/ptm/m/n /10 : the [2445] [2446] [2447] [2448] Underfull \hbox (badness 10000) in paragraph at lines 5399--5401 []\T1/ptm/m/n/10 a ma-trix fac-tor-iza-tion, typ-i-cally in-her-it-ing from vir -tual class Overfull \hbox (29.27832pt too wide) in paragraph at lines 5418--5418 [] \T1/pcr/m/n/10 all.equal(as(x, "matrix"), as(Reduce(\TS1/cmtt/m/n/10 `\T 1/pcr/m/n/10 %*%\TS1/cmtt/m/n/10 `\T1/pcr/m/n/10 , expand2(y)), "matrix")) Overfull \hbox (37.71342pt too wide) in alignment at lines 5449--5449 [] [] [2449] Underfull \hbox (badness 7064) in paragraph at lines 5477--5494 []\T1/pcr/m/n/10 signature(x = "p?BunchKaufman")[]\T1/ptm/m/n/10 : ex-pands the fac-tor-iza-tion $\OML/cmm/m/it/10 A \OT1/cmr/m/n/10 = Underfull \hbox (badness 3000) in paragraph at lines 5506--5513 []\T1/pcr/m/n/10 signature(x = "denseLU")[]\T1/ptm/m/n/10 : ex-pands the fac-to r-iza-tion $\OML/cmm/m/it/10 A \OT1/cmr/m/n/10 = \OML/cmm/m/it/10 P[]LU$ \T1/pt m/m/n/10 as Underfull \hbox (badness 2735) in paragraph at lines 5522--5529 []\T1/pcr/m/n/10 signature(x = "CHMfactor")[]\T1/ptm/m/n/10 : as []\T1/pcr/m/n/ 10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/pcr/m/n/10 list(P, L)[]\T1/p tm/m/n/10 . Underfull \hbox (badness 1337) in paragraph at lines 5529--5544 []\T1/pcr/m/n/10 signature(x = "sparseLU")[]\T1/ptm/m/n/10 : as []\T1/pcr/m/n/1 0 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/pcr/m/n/10 list(P, L, U, Underfull \hbox (badness 2680) in paragraph at lines 5529--5544 \T1/pcr/m/n/10 Q)[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 expand(x)[["Q"]] []\T1/ptm /m/n/10 and []\T1/pcr/m/n/10 expand2(x)[["P2."]] []\T1/ptm/m/n/10 rep-re-sent t he same per- Underfull \hbox (badness 5374) in paragraph at lines 5529--5544 \T1/ptm/m/n/10 mu-ta-tion ma-trix $\OML/cmm/m/it/10 P[]$ \T1/ptm/m/n/10 but hav e op-po-site []\T1/pcr/m/n/10 margin []\T1/ptm/m/n/10 slots and in-verted []\T1 /pcr/m/n/10 perm []\T1/ptm/m/n/10 slots. Underfull \hbox (badness 2073) in paragraph at lines 5544--5549 []\T1/pcr/m/n/10 signature(x = "denseLU")[]\T1/ptm/m/n/10 : as []\T1/pcr/m/n/10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/pcr/m/n/10 list(L, U, P)[]\T1/ ptm/m/n/10 . [2450] [2451] [2452] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5752--5752 []\T1/pcr/m/n/9 str(pores <- readMM(system.file("external/pores_1.mtx", packag e = "Matrix")))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5753--5753 []\T1/pcr/m/n/9 str(utm <- readHB(system.file("external/utm300.rua" , packag e = "Matrix")))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5754--5754 []\T1/pcr/m/n/9 str(lundA <- readMM(system.file("external/lund_a.mtx" , packag e = "Matrix")))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5755--5755 []\T1/pcr/m/n/9 str(lundA <- readHB(system.file("external/lund_a.rsa" , packag e = "Matrix")))[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 5756--5756 []\T1/pcr/m/n/9 ## https://math.nist.gov/MatrixMarket/data/Harwell-Boeing/coun terx/counterx.htm[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5757--5757 []\T1/pcr/m/n/9 str(jgl <- readMM(system.file("external/jgl009.mtx" , packag e = "Matrix")))[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 5763--5763 []\T1/pcr/m/n/9 u. <- url("https://www.cise.ufl.edu/research/sparse/RB/Boeing/ msc00726.tar.gz")[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5768--5768 []\T1/pcr/m/n/9 ## Store as MatrixMarket (".mtx") file, here inside temporary dir./folder:[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5771--5771 []\T1/pcr/m/n/9 file.info(MMfile)[,c("size", "ctime")] # (some confirmation of the file\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s)[] [2453] Overfull \hbox (58.38037pt too wide) in paragraph at lines 5781--5781 []\T1/pcr/m/n/9 ## has columns (i, j, x) -> we can use via do.call() as argume nts to sparseMatrix():[] [2454] Overfull \hbox (25.98041pt too wide) in paragraph at lines 5843--5843 [] \T1/pcr/m/n/9 all.equal(facmul(x, nm, y, trans = TRUE, left = TRUE), crossprod(L, y))[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 5844--5844 [] \T1/pcr/m/n/9 all.equal(facmul(x, nm, y, trans = TRUE, left = FALSE), t crossprod(y, L))[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 5923--5923 []\T1/pcr/m/n/10 .diag2dense(from, kind = ".", shape = "t", packed = FALSE, up lo = "U")[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 5925--5925 []\T1/pcr/m/n/10 .m2dense(from, class = ".ge", uplo = "U", diag = "N", trans = FALSE)[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 5928--5928 []\T1/pcr/m/n/10 .diag2sparse(from, kind = ".", shape = "t", repr = "C", uplo = "U")[] [2455] Overfull \hbox (18.78088pt too wide) in paragraph at lines 5930--5930 []\T1/pcr/m/n/10 .m2sparse(from, class = ".gC", uplo = "U", diag = "N", trans = FALSE)[] Underfull \hbox (badness 10000) in paragraph at lines 6000--6002 []\T1/ptm/m/n/10 a string in []\T1/pcr/m/n/10 c("trace", "sumLog", "prod", "min ", "max", [2456] Underfull \hbox (badness 10000) in paragraph at lines 6073--6079 [][]\T1/pcr/m/n/10 .solve.dgC.*(a, b)[]\T1/ptm/b/n/10 : []\T1/pcr/m/n/10 .solv e.dgC.lu(a, b) []\T1/ptm/m/n/10 needs a square ma-trix []\T1/pcr/m/n/10 a[]\T1/ ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 6073--6079 []\T1/pcr/m/n/10 .solve.dgC.qr(a, b) []\T1/ptm/m/n/10 needs a ``long'' ma-trix []\T1/pcr/m/n/10 a[]\T1/ptm/m/n/10 , with []\T1/pcr/m/n/10 nrow(a) >= ncol(a)[] \T1/ptm/m/n/10 . [2457] Underfull \hbox (badness 10000) in paragraph at lines 6087--6096 [][]\T1/pcr/m/n/10 .updateCHMfactor(object, parent, mult)[]\T1/ptm/b/n/10 : [] \T1/pcr/m/n/10 .updateCHMfactor []\T1/ptm/m/n/10 up- Underfull \hbox (badness 10000) in paragraph at lines 6087--6096 \T1/ptm/m/n/10 dates []\T1/pcr/m/n/10 object []\T1/ptm/m/n/10 with the re-sult of Cholesky fac-tor-iz-ing []\T1/pcr/m/n/10 F(parent) + mult[1] * Underfull \hbox (badness 2443) in paragraph at lines 6087--6096 \T1/pcr/m/n/10 diag(nrow(parent))[]\T1/ptm/m/n/10 , i.e., []\T1/pcr/m/n/10 F(pa rent) []\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 mult[1] []\T1/ptm/m/n/10 times the iden-tity ma-trix, [2458] [2459] [2460] [2461]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.image}) has been already used, duplicate ignored \relax l.6399 \aliasA{image}{image-methods}{image} [2462] [2463] Underfull \hbox (badness 4120) in paragraph at lines 6495--6498 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ][]\T1/pcr/m/n/10 dgTMatrix[][][] []\T1/ptm/m/n/10 class. Use Overfull \hbox (47.58038pt too wide) in paragraph at lines 6514--6514 []\T1/pcr/m/n/9 stopifnot(!is.null(leg <- imgC$legend), is.list(leg$right)) # failed for 2 days ..[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6534--6534 []\T1/pcr/m/n/9 ## Using (xlim,ylim) has advantage : matrix dimension and (col /row) indices:[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 6540--6540 [] \T1/pcr/m/n/9 I2 <- image(USCounties, c(1,100), c(1,100), useAbs=FALSE, border.col=NA)[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 6541--6541 [] \T1/pcr/m/n/9 I3 <- image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd =2, border.col=NA)[] Overfull \hbox (144.78027pt too wide) in paragraph at lines 6545--6545 []\T1/pcr/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor der.col = adjustcolor("skyblue", 1/2))[] [2464] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6553--6553 []\T1/pcr/m/n/9 image(USCounties, useRaster = TRUE) # should not suffer from a nti-aliasing[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 6556--6556 [] \T1/pcr/m/n/9 ## and now look at the *.png image in a viewer you can easi ly zoom in and out[] [2465] Underfull \hbox (badness 10000) in paragraph at lines 6684--6687 []\T1/pcr/m/n/10 signature(x = "indMatrix", y = "Matrix") []\T1/ptm/m/n/10 and oth-ers listed by Underfull \hbox (badness 1286) in paragraph at lines 6684--6687 []\T1/pcr/m/n/10 showMethods("%*%", classes = "indMatrix")[]\T1/ptm/m/n/10 : ma -trix prod-ucts im-ple-mented Underfull \hbox (badness 10000) in paragraph at lines 6687--6690 []\T1/pcr/m/n/10 signature(from = "numeric", to = "indMatrix")[]\T1/ptm/m/n/10 : sup-port-ing typ-i-cal Underfull \hbox (badness 3375) in paragraph at lines 6690--6695 []\T1/pcr/m/n/10 signature(from = "list", to = "indMatrix")[]\T1/ptm/m/n/10 : s up-port-ing []\T1/pcr/m/n/10 indMatrix Underfull \hbox (badness 4156) in paragraph at lines 6701--6703 []\T1/pcr/m/n/10 signature(x = "indMatrix")[]\T1/ptm/m/n/10 : row and Underfull \hbox (badness 1337) in paragraph at lines 6707--6711 []\T1/pcr/m/n/10 signature(X = "indMatrix", Y = "indMatrix")[]\T1/ptm/m/n/10 : Kro-necker prod-uct of [2466] Underfull \hbox (badness 1776) in paragraph at lines 6717--6726 []\T1/ptm/m/n/10 Fabian Scheipl at `\T1/pcr/m/n/10 uni-muenchen.de\T1/ptm/m/n/1 0 ', build-ing on the ex-ist-ing class [][][]\T1/pcr/m/n/10 pMatrix[][][] []\T1 /ptm/m/n/10 af-ter Underfull \hbox (badness 1253) in paragraph at lines 6717--6726 \T1/ptm/m/n/10 a nice hike's con-ver-sa-tion with Mar-tin Maech-ler. Meth-ods f or [][][]\T1/pcr/m/n/10 crossprod[][][](x, y) []\T1/ptm/m/n/10 and [2467] Underfull \hbox (badness 1509) in paragraph at lines 6810--6812 []\T1/ptm/m/n/10 an in-te-ger off-set, in-di-cat-ing that the re-sult should be a per-mu-ta-tion of Underfull \hbox (badness 10000) in paragraph at lines 6837--6841 []\T1/pcr/m/n/10 invertPerm(p) []\T1/ptm/m/n/10 re-turns an in-te-ger vec-tor o f length []\T1/pcr/m/n/10 length(p) []\T1/ptm/m/n/10 such that Underfull \hbox (badness 4441) in paragraph at lines 6837--6841 []\T1/pcr/m/n/10 p[invertPerm(p)] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 invertP erm(p)[p] []\T1/ptm/m/n/10 are both []\T1/pcr/m/n/10 seq_along(p)[]\T1/ptm/m/n/ 10 , i.e., the [2468] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6874--6874 []\T1/pcr/m/n/9 ## Product of transpositions (1 2)(2 1)(4 3)(6 8)(10 1) = (3 4 )(6 8)(1 10)[] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.anyNA}) h as been already used, duplicate ignored \relax l.6888 \aliasA{anyNA}{is.na-methods}{anyNA} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.is.finite}) has been already used, duplicate ignored \relax l.6895 ...asA{is.finite}{is.na-methods}{is.finite} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.is.infinite}) has been already used, d uplicate ignored \relax l.6903 ...is.infinite}{is.na-methods}{is.infinite} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.is.na}) has been already used, duplica te ignored \relax l.6911 \aliasA{is.na}{is.na-methods}{is.na} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.is.nan}) has been already used, duplicate ign ored \relax l.6918 \aliasA{is.nan}{is.na-methods}{is.nan} [2469] [2470]pdfTeX warning (ext4 ): destination with the same identifier (name{Rfn.isSymmetric}) has been alread y used, duplicate ignored \relax l.7077 ...etric}{isSymmetric-methods}{isSymmetric} [2471] Overfull \hbox (138.78088pt too wide) in paragraph at lines 7124--7124 []\T1/pcr/m/n/10 isSymmetric(object, checkDN = TRUE, tol = 100 * .Machine$doub le.eps, tol1 = 8 * tol, ...)[] Overfull \hbox (42.78088pt too wide) in paragraph at lines 7126--7126 []\T1/pcr/m/n/10 isSymmetric(object, checkDN = TRUE, tol = 100 * .Machine$doub le.eps, ...)[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 7181--7181 []\T1/pcr/m/n/9 isSymmetric(as(M, "generalMatrix")) # still symmetric, even if not "formally"[] [2472] Overfull \hbox (25.98041pt too wide) in paragraph at lines 7185--7185 []\T1/pcr/m/n/9 showMethods("isSymmetric", includeDefs = TRUE) # includes S3 g eneric from base[] [2473] Overfull \hbox (31.3804pt too wide) in paragraph at lines 7268--7268 []\T1/pcr/m/n/9 isTriangular(as(M, "generalMatrix")) # still triangular, even if not "formally"[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 7295--7295 []\T1/pcr/m/n/10 KhatriRao(X, Y = X, FUN = "*", sparseY = TRUE, make.dimnames = FALSE) [2474] Overfull \hbox (15.18042pt too wide) in paragraph at lines 7371--7371 []\T1/pcr/m/n/9 stopifnot(all(K1 <- KhatriRao(nd, zm) == 0), identical(dim(K1) , c(12L, 4L)),[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 7372--7372 [] \T1/pcr/m/n/9 all(K2 <- KhatriRao(zm, nd) == 0), identical(dim(K2) , c(12L, 4L)))[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 7379--7379 [] \T1/pcr/m/n/9 identical(dimnames(KhatriRao(m, d0, make.dimnames=TRUE)), di mnames(Kmd)))[] [2475]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.kro necker}) has been already used, duplicate ignored \relax l.7453 ...kronecker}{kronecker-methods}{kronecker} [2476] Underfull \hbox (badness 1062) in paragraph at lines 7552--7555 []\T1/pcr/m/n/10 ldenseMatrix []\T1/ptm/m/n/10 is the vir-tual class of all den se \T1/ptm/b/n/10 l\T1/ptm/m/n/10 ogical (S4) ma-tri-ces. It ex-tends both [2477] Underfull \hbox (badness 6063) in paragraph at lines 7578--7581 []\T1/pcr/m/n/10 signature(x = "ndenseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2478pdfTeX warning (ext4): destination with the same identifier (name{Rfn.*,nd iMatrix,Matrix.Rdash.method}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box l.7707 crossprod(nM) # pattern sparse ] Underfull \hbox (badness 2635) in paragraph at lines 7738--7743 []\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ldenseMatrix"[]\T1/ptm/m/n/10 , di-rec tly. Class []\T1/pcr/m/n/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/ 10 "ldenseMatrix"[]\T1/ptm/m/n/10 . Underfull \hbox (badness 4229) in paragraph at lines 7738--7743 \T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "denseMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/10 "ldenseMatrix"[]\T1/ptm/m/n/10 . Class []\T1/pcr/m/n/10 "Matri x"[]\T1/ptm/m/n/10 , by class Underfull \hbox (badness 10000) in paragraph at lines 7746--7749 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n /10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/ 10 ); use, e.g., [2479] Underfull \hbox (badness 10000) in paragraph at lines 7804--7814 []\T1/pcr/m/n/10 lsTMatrix[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 ltTMatrix[]\T 1/ptm/m/n/10 ) or in com-pressed column-oriented form (class Underfull \hbox (badness 1242) in paragraph at lines 7804--7814 [][][]\T1/pcr/m/n/10 CsparseMatrix[][][][]\T1/ptm/m/n/10 , sub-classes []\T1/pc r/m/n/10 lgCMatrix[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lsCMatrix[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 ltCMatrix[]\T1/ptm/m/n/10 ) or--\T1/ptm/m/it/10 rarely\ T1/ptm/m/n/10 --in [2480] Underfull \hbox (badness 3179) in paragraph at lines 7886--7889 []\T1/pcr/m/n/10 signature(x = "lsparseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cal ly equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2481] Underfull \hbox (badness 10000) in paragraph at lines 7971--7974 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n /10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/ 10 ; use, e.g., [2482] Underfull \hbox (badness 10000) in paragraph at lines 8032--8035 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n /10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/ 10 ; use, e.g., [2483] [2484] [2485] Underfull \hbox (badness 10000) in paragraph at lines 8270--8273 []\T1/ptm/m/n/10 vector of all non-zero en-tries of []\T1/pcr/m/n/10 x[]\T1/ptm /m/n/10 ; ex-ists \T1/ptm/b/n/10 only \T1/ptm/m/n/10 when []\T1/pcr/m/n/10 as(x , Underfull \hbox (badness 1490) in paragraph at lines 8292--8294 []\T1/pcr/m/n/10 mat2triplet() []\T1/ptm/m/n/10 is con-cep-tu-ally the \T1/ptm/ m/it/10 in-verse \T1/ptm/m/n/10 func-tion of [][][]\T1/pcr/m/n/10 spMatrix[][][ ] []\T1/ptm/m/n/10 and (one case of) [2486]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp cent.*.Rpcent.}) has been already used, duplicate ignored \relax l.8313 ...*\%}{matmult-methods}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.crossprod}) has been already used, dup licate ignored \relax l.8387 ...A{crossprod}{matmult-methods}{crossprod} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du plicate ignored \relax l.8463 ...tcrossprod}{matmult-methods}{tcrossprod} Underfull \hbox (badness 1881) in paragraph at lines 8549--8555 \T1/ptm/m/n/10 ally im-ple-mented ef-fi-ciently with-out com-put-ing [][][]\T1/ pcr/m/n/10 t[][][](.)[]\T1/ptm/m/n/10 's un-nec-es-sar-ily. They also re-turn [2487] Underfull \hbox (badness 10000) in paragraph at lines 8618--8621 []\T1/pcr/m/n/10 signature(x = "dgeMatrix", y = "dgeMatrix")[]\T1/ptm/m/n/10 : Ma-trix mul-ti-pli-ca-tion; Underfull \hbox (badness 10000) in paragraph at lines 8621--8626 []\T1/pcr/m/n/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and other sig-na-tures (use Underfull \hbox (badness 3557) in paragraph at lines 8621--8626 []\T1/pcr/m/n/10 showMethods("%*%", class="dtrMatrix")[]\T1/ptm/m/n/10 ): ma-tr ix mul-ti-pli-ca-tion. Mul-ti- Underfull \hbox (badness 6608) in paragraph at lines 8626--8630 \T1/ptm/m/n/10 sig-na-tures, use []\T1/pcr/m/n/10 showMethods("crossprod", clas s = "dgeMatrix")[]\T1/ptm/m/n/10 , ma-trix Underfull \hbox (badness 1552) in paragraph at lines 8636--8637 []\T1/pcr/m/n/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and other sig-na- [2488] [2489] [2490]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det}) has been already used, duplicate ignored \relax l.8859 \aliasA{det}{Matrix-class}{det} Underfull \hbox (badness 1337) in paragraph at lines 8933--8936 []\T1/pcr/m/n/10 signature(x = "Matrix", value = "list")[]\T1/ptm/m/n/10 : set the []\T1/pcr/m/n/10 dimnames []\T1/ptm/m/n/10 to a Underfull \hbox (badness 10000) in paragraph at lines 8949--8952 Underfull \hbox (badness 10000) in paragraph at lines 8958--8960 []\T1/pcr/m/n/10 signature(from = "ANY", to = "Matrix")[]\T1/ptm/m/n/10 : This re-lies on a cor-rect [2491] [2492] [2493] Underfull \hbox (badness 10000) in paragraph at lines 9128--9132 []\T1/pcr/m/n/10 CholeskyFactorization[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Bunch KaufmanFactorization[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9151--9153 []\T1/pcr/m/n/10 signature(x = "MatrixFactorization", logarithm = Underfull \hbox (badness 10000) in paragraph at lines 9168--9171 []\T1/pcr/m/n/10 signature(obj = "MatrixFactorization")[]\T1/ptm/m/n/10 : re-tu rns []\T1/pcr/m/n/10 obj []\T1/ptm/m/n/10 with Underfull \hbox (badness 3019) in paragraph at lines 9177--9180 []\T1/ptm/m/n/10 Classes ex-tend-ing []\T1/pcr/m/n/10 CholeskyFactorization[]\T 1/ptm/m/n/10 , namely [][][]\T1/pcr/m/n/10 Cholesky[][][][]\T1/ptm/m/n/10 , [][ ][]\T1/pcr/m/n/10 pCholesky[][][][]\T1/ptm/m/n/10 , and [2494] Underfull \hbox (badness 10000) in paragraph at lines 9181--9183 []\T1/ptm/m/n/10 Classes ex-tend-ing []\T1/pcr/m/n/10 BunchKaufmanFactorization []\T1/ptm/m/n/10 , namely [][][]\T1/pcr/m/n/10 BunchKaufman[][][] []\T1/ptm/m/n /10 and Underfull \hbox (badness 10000) in paragraph at lines 9196--9199 []\T1/ptm/m/n/10 Generic func-tions [][][]\T1/pcr/m/n/10 expand1[][][] []\T1/pt m/m/n/10 and [][][]\T1/pcr/m/n/10 expand2[][][] []\T1/ptm/m/n/10 for con-struct -ing ma-trix fac-tors from Underfull \hbox (badness 1062) in paragraph at lines 9225--9228 []\T1/pcr/m/n/10 ndenseMatrix []\T1/ptm/m/n/10 is the vir-tual class of all den se \T1/ptm/b/n/10 l\T1/ptm/m/n/10 ogical (S4) ma-tri-ces. It ex-tends both Underfull \hbox (badness 6063) in paragraph at lines 9257--9260 []\T1/pcr/m/n/10 signature(x = "ndenseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2495] Underfull \hbox (badness 3312) in paragraph at lines 9314--9316 []\T1/ptm/m/n/10 logical in-di-cat-ing if []\T1/pcr/m/n/10 X <- (X + t(X))/2 [] \T1/ptm/m/n/10 should be done, af-ter []\T1/pcr/m/n/10 X <- [2496] [2497] Overfull \hbox (85.38034pt too wide) in paragraph at lines 9417--9417 [] \T1/pcr/m/n/9 all.equal(n.A.m, unname(as.matrix(n.A$mat)), tolerance = 1e -15)# seen rel.d.= 1.46e-16[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 9457--9457 []\T1/pcr/m/n/9 stopifnot(all.equal(ncr, ncF))# norm type does not matter at a ll in this example[] [2498] Underfull \hbox (badness 2635) in paragraph at lines 9510--9515 []\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ndenseMatrix"[]\T1/ptm/m/n/10 , di-rec tly. Class []\T1/pcr/m/n/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/ 10 "ndenseMatrix"[]\T1/ptm/m/n/10 . Underfull \hbox (badness 4229) in paragraph at lines 9510--9515 \T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "denseMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/10 "ndenseMatrix"[]\T1/ptm/m/n/10 . Class []\T1/pcr/m/n/10 "Matri x"[]\T1/ptm/m/n/10 , by class Underfull \hbox (badness 10000) in paragraph at lines 9518--9521 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n /10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/ 10 ); use, e.g., [2499] Underfull \hbox (badness 2521) in paragraph at lines 9586--9592 []\T1/pcr/m/n/10 signature(from = "matrix", to = "nMatrix")[]\T1/ptm/m/n/10 : N ote that these co-er-cions [2500] Underfull \hbox (badness 1867) in paragraph at lines 9699--9701 []\T1/ptm/m/n/10 fast sim- [2501]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.nor m}) has been already used, duplicate ignored \relax l.9741 \aliasA{norm}{norm-methods}{norm} [2502] Overfull \hbox (4.38043pt too wide) in paragraph at lines 9836--9836 []\T1/pcr/m/n/9 A <- sparseMatrix(i, j, x = x) ## 8 x 10 "dgCMatrix"[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 9837--9837 []\T1/pcr/m/n/9 (sA <- sparseMatrix(i, j, x = x, symmetric = TRUE)) ## 10 x 10 "dsCMatrix"[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 9838--9838 []\T1/pcr/m/n/9 (tA <- sparseMatrix(i, j, x = x, triangular= TRUE)) ## 10 x 10 "dtCMatrix"[] Underfull \hbox (badness 2401) in paragraph at lines 9883--9893 []\T1/ptm/m/n/10 These can be stored in the ``triplet'' form ([][][]\T1/pcr/m/n /10 TsparseMatrix[][][][]\T1/ptm/m/n/10 , sub-classes []\T1/pcr/m/n/10 ngTMatri x[]\T1/ptm/m/n/10 , [2503] Underfull \hbox (badness 3179) in paragraph at lines 9954--9957 []\T1/pcr/m/n/10 signature(x = "lsparseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cal ly equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2504] Underfull \hbox (badness 10000) in paragraph at lines 10034--10037 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n /10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/ 10 ; use, e.g., [2505] Underfull \hbox (badness 10000) in paragraph at lines 10098--10101 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n /10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/ 10 ; use, e.g., [2506] Underfull \hbox (badness 10000) in paragraph at lines 10172--10174 []\T1/ptm/m/n/10 typically a []\T1/pcr/m/n/10 "packedMatrix"[]\T1/ptm/m/n/10 , though [2507] [2508] [2509] Underfull \hbox (badness 10000) in paragraph at lines 10386--10389 []\T1/pcr/m/n/10 signature(x = "pMatrix", y = "Matrix") []\T1/ptm/m/n/10 and ot h-ers listed by Underfull \hbox (badness 8189) in paragraph at lines 10386--10389 []\T1/pcr/m/n/10 showMethods("%*%", classes = "pMatrix")[]\T1/ptm/m/n/10 : ma-t rix prod-ucts im-ple-mented Underfull \hbox (badness 10000) in paragraph at lines 10389--10393 []\T1/pcr/m/n/10 signature(from = "numeric", to = "pMatrix")[]\T1/ptm/m/n/10 : sup-port-ing typ-i-cal Underfull \hbox (badness 2460) in paragraph at lines 10397--10403 []\T1/pcr/m/n/10 signature(a = "pMatrix", b = "missing")[]\T1/ptm/m/n/10 : the in-verse per-mu-ta-tion ma-trix, [2510] Overfull \hbox (36.78088pt too wide) in paragraph at lines 10467--10467 [] \T1/pcr/m/n/10 col.names, note.dropping.colnames = TRUE, uniD iag = TRUE,[] Overfull \hbox (42.78088pt too wide) in paragraph at lines 10470--10470 []\T1/pcr/m/n/10 printSpMatrix(x, digits = NULL, maxp = max(100L, getOption("m ax.print")),[] Overfull \hbox (42.78088pt too wide) in paragraph at lines 10472--10472 [] \T1/pcr/m/n/10 zero.print = ".", col.names, note.dropping.coln ames = TRUE,[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 10476--10476 []\T1/pcr/m/n/10 printSpMatrix2(x, digits = NULL, maxp = max(100L, getOption(" max.print")),[] [2511] Overfull \hbox (42.78088pt too wide) in paragraph at lines 10477--10477 [] \T1/pcr/m/n/10 zero.print = ".", col.names, note.dropping.coln ames = TRUE,[] Underfull \hbox (badness 3989) in paragraph at lines 10502--10512 []\T1/ptm/m/n/10 logical or string spec-i-fy-ing if and how col-umn names of [] \T1/pcr/m/n/10 x []\T1/ptm/m/n/10 should Underfull \hbox (badness 10000) in paragraph at lines 10502--10512 \T1/ptm/m/n/10 be printed, pos-si-bly ab-bre-vi-ated. The de-fault is taken fro m [2512]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr} ) has been already used, duplicate ignored \relax l.10604 \aliasA{qr}{qr-methods}{qr} [2513] [2514] Overfull \hbox (25.98041pt too wide) in paragraph at lines 10736--10736 [] \T1/pcr/m/n/9 all.equal(qr.coef(qr.A1, b), drop(solve(crossprod(A1), cro ssprod(A1, b))))[] [2515] Overfull \hbox (9.78043pt too wide) in paragraph at lines 10752--10752 [] \T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 qr.coef\TS1/pcr/m/n/9 ' \ T1/pcr/m/n/9 computes unique least squares solution of "nearby" problem[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 10753--10753 [] \T1/pcr/m/n/9 ## Z x = b for some full rank Z ~ A, currently without war ning {FIXME} ![] Overfull \hbox (9.78043pt too wide) in paragraph at lines 10796--10796 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m atrix"), ...)[] Underfull \vbox (badness 10000) has occurred while \output is active [2516] Underfull \hbox (badness 2005) in paragraph at lines 10848--10854 []\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of [][][]\T1/pcr/m/n/10 qr[][][](x, tol, Underfull \hbox (badness 10000) in paragraph at lines 10865--10868 []\T1/ptm/m/n/10 is for back com-pat-i-bil-ity; for dense []\T1/pcr/m/n/10 x[]\ T1/ptm/m/n/10 , it cor-re-sponds to [2517] [2518] Overfull \hbox (85.38034pt too wide) in paragraph at lines 10962--10962 []\T1/pcr/m/n/9 ## The meaning of \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 tol\TS1/pcr/m/ n/9 ' \T1/pcr/m/n/9 for method="qrLINPACK" and *dense* x is not entirely "scale free"[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 10978--10978 []\T1/pcr/m/n/9 sapply(meths, function(.m.) rankMatrix(M15, method = .m., tol = 1e-7)) # all 14[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 10985--10985 []\T1/pcr/m/n/9 (st1 <- system.time(r1 <- rankMatrix(L))) # war ning+ ~1.5 sec (2013)[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 10986--10986 []\T1/pcr/m/n/9 (st2 <- system.time(r2 <- rankMatrix(L, method = "qr"))) # con siderably faster![] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rcond}) h as been already used, duplicate ignored \relax l.11005 \aliasA{rcond}{rcond-methods}{rcond} [2519] [2520] Overfull \hbox (20.58041pt too wide) in paragraph at lines 11121--11121 []\T1/pcr/m/n/9 rcond(x2 <- cbind(x1, 2:11))# practically 0, since x2 does not have full rank[] [2521] [2522] Underfull \hbox (badness 2150) in paragraph at lines 11287--11295 \T1/ptm/m/n/10 dices, if not []\T1/pcr/m/n/10 symmetric [][]sample.int[][][](nr ow*ncol, nnz)[]\T1/ptm/m/n/10 , then---if []\T1/pcr/m/n/10 rand.x []\T1/ptm/m/n /10 is not [2523] [2524] Underfull \hbox (badness 5147) in paragraph at lines 11444--11447 []\T1/ptm/m/n/10 Class [][][]\T1/pcr/m/n/10 SchurFactorization[][][][]\T1/ptm/m /n/10 , di-rectly. Class [][][]\T1/pcr/m/n/10 MatrixFactorization[][][][]\T1/pt m/m/n/10 , by class [2525] Underfull \hbox (badness 3179) in paragraph at lines 11459--11462 []\T1/pcr/m/n/10 signature(from = "Schur", logarithm = "logical")[]\T1/ptm/m/n/ 10 : com-putes [2526] [2527] Overfull \hbox (9.78043pt too wide) in paragraph at lines 11623--11623 [] \T1/pcr/m/n/9 all.equal(e1, e3[order(Mod(e3), decreasing = TRUE)], toler ance = 1e-13)[] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solve}) h as been already used, duplicate ignored \relax l.11633 \aliasA{solve}{solve-methods}{solve} [2528] Overfull \hbox (90.78088pt too wide) in paragraph at lines 11757--11757 []\T1/pcr/m/n/10 solve(a, b, system = c("A", "LDLt", "LD", "DLt", "L", "Lt", " D", "P", "Pt"), ...)[] Underfull \hbox (badness 1147) in paragraph at lines 11769--11775 []\T1/ptm/m/n/10 a vec-tor, [][][]\T1/pcr/m/n/10 sparseVector[][][][]\T1/ptm/m/ n/10 , ma-trix, or [][][]\T1/pcr/m/n/10 Matrix[][][] []\T1/ptm/m/n/10 sat-is-fy -ing []\T1/pcr/m/n/10 NROW(b) == Underfull \hbox (badness 3460) in paragraph at lines 11819--11824 []\T1/ptm/m/n/10 Methods for dense []\T1/pcr/m/n/10 a []\T1/ptm/m/n/10 are buil t on 14 LA-PACK rou-tines: class []\T1/pcr/m/n/10 d..Matrix[]\T1/ptm/m/n/10 , w here Underfull \hbox (badness 2359) in paragraph at lines 11825--11839 []\T1/ptm/m/n/10 Methods for sparse []\T1/pcr/m/n/10 a []\T1/ptm/m/n/10 are bui lt on CXS-parse rou-tines []\T1/pcr/m/n/10 cs_lsolve[]\T1/ptm/m/n/10 , []\T1/pc r/m/n/10 cs_usolve[]\T1/ptm/m/n/10 , and [2529] Overfull \hbox (52.98038pt too wide) in paragraph at lines 11892--11892 []\T1/pcr/m/n/9 image(ia0 <- solve(a, tol = 0)) # checker board, dense [but re ally, a is singular!][] Overfull \hbox (25.98041pt too wide) in paragraph at lines 11896--11896 [] \T1/pcr/m/n/9 ## Fails on 32-bit [Fedora 19, R 3.0.2] from Matrix 1.1-0 on [FIXME ??] only[] [2530] Underfull \hbox (badness 10000) in paragraph at lines 11919--11922 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu la and data frame Overfull \hbox (6.78088pt too wide) in paragraph at lines 11936--11936 [] \T1/pcr/m/n/10 drop.unused.levels = TRUE, repr = c("C", "R", "T"), giveCs parse)[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 11938--11938 [] \T1/pcr/m/n/10 drop.unused.levels = TRUE, repr = c("C", "R", "T"), giveCs parse,[] Underfull \hbox (badness 1648) in paragraph at lines 11947--11949 []\T1/ptm/m/n/10 a data frame cre-ated with [][][]\T1/pcr/m/n/10 model.frame[][ ][][]\T1/ptm/m/n/10 . If an-other sort of ob-ject, Underfull \hbox (badness 10000) in paragraph at lines 11955--11958 []\T1/ptm/m/n/10 character string or []\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or (co-er-ca-ble to) Underfull \hbox (badness 2591) in paragraph at lines 11955--11958 []\T1/pcr/m/n/10 "[][]sparseMatrix[][][]"[]\T1/ptm/m/n/10 , spec-i-fy-ing the c on-trasts to be ap-plied to the Underfull \hbox (badness 10000) in paragraph at lines 11966--11970 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for Underfull \hbox (badness 2828) in paragraph at lines 11966--11970 []\T1/pcr/m/n/10 sparse.model.matrix []\T1/ptm/m/n/10 has been changed to []\T1 /pcr/m/n/10 FALSE[]\T1/ptm/m/n/10 , 2010-07, for [2531] Underfull \hbox (badness 1668) in paragraph at lines 11981--11986 [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string, one of []\T1/pcr/ m/n/10 "C"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 , or []\T1/pc r/m/n/10 "R"[]\T1/ptm/m/n/10 , spec-i-fy-ing the sparse Underfull \hbox (badness 3291) in paragraph at lines 12008--12013 []\T1/pcr/m/n/10 model.Matrix(sparse = TRUE) []\T1/ptm/m/n/10 from pack-age [][ ]\T1/ptm/b/n/10 Ma-trix-Mod-els[][] \T1/ptm/m/n/10 may be nowa-days be Underfull \hbox (badness 2073) in paragraph at lines 12008--12013 \T1/ptm/m/n/10 prefer-able to []\T1/pcr/m/n/10 sparse.model.matrix[]\T1/ptm/m/n /10 , as []\T1/pcr/m/n/10 model.Matrix []\T1/ptm/m/n/10 re-turns an ob-ject of class [2532] Overfull \hbox (4.38043pt too wide) in paragraph at lines 12061--12061 [] \T1/pcr/m/n/9 is(M <- fac2sparse(f30, drop= TRUE),"CsparseMatrix"), dim(M) == c(0, 0),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 12062--12062 [] \T1/pcr/m/n/9 is(M <- fac2sparse(f30, drop=FALSE),"CsparseMatrix"), dim(M) == c(3, 0),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 12063--12063 [] \T1/pcr/m/n/9 is(M <- fac2sparse(f12, drop= TRUE),"CsparseMatrix"), dim(M) == c(0,12),[] [2533] Underfull \hbox (badness 2961) in paragraph at lines 12125--12128 []\T1/pcr/m/n/10 signature(from = "sparseLU", logarithm = "logical")[]\T1/ptm/m /n/10 : com- Overfull \hbox (9.78043pt too wide) in paragraph at lines 12168--12168 []\T1/pcr/m/n/9 A <- as(readMM(system.file("external", "pores_1.mtx", package = "Matrix")),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 12179--12179 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m atrix"), ...)[] [2534] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12186--12186 [] \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(dn[1L ], list(NULL)),[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12189--12189 [] \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list( NULL), dn[2L]),[] Underfull \hbox (badness 10000) in paragraph at lines 12214--12216 []\T1/ptm/m/n/10 This in-ter-face is rec-om-mended over di-rect con-struc-tion via calls such as Overfull \hbox (0.78088pt too wide) in paragraph at lines 12221--12221 [] \T1/pcr/m/n/10 symmetric = FALSE, triangular = FALSE, index1 = TRUE,[] [2535] Underfull \hbox (badness 2261) in paragraph at lines 12259--12265 \T1/ptm/m/n/10 of the sparse ma-trix re-sult, i.e., spec-i-fy-ing one of the vi r-tual classes [2536] Underfull \hbox (badness 10000) in paragraph at lines 12348--12351 []\T1/ptm/m/n/10 The stan-dard \T1/phv/m/n/10 R [][][]\T1/pcr/m/n/10 xtabs[][][ ](*, sparse=TRUE)[]\T1/ptm/m/n/10 , for sparse ta-bles and Overfull \hbox (4.38043pt too wide) in paragraph at lines 12361--12361 []\T1/pcr/m/n/9 (A <- sparseMatrix(i, j, x = x)) ## 8 x 10 "dgCMatrix"[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 12365--12365 []\T1/pcr/m/n/9 (sA <- sparseMatrix(i, j, x = x, symmetric = TRUE)) ## 10 x 10 "dsCMatrix"[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 12366--12366 []\T1/pcr/m/n/9 (tA <- sparseMatrix(i, j, x = x, triangular= TRUE)) ## 10 x 10 "dtCMatrix"[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 12371--12371 []\T1/pcr/m/n/9 (AA <- sparseMatrix(c(1,3:8), c(2,9,6:10), x = 7 * (1:7), dims = c(10,20)))[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 12374--12374 []\T1/pcr/m/n/9 ## i, j and x can be in an arbitrary order, as long as they ar e consistent[] [2537] Overfull \hbox (15.18042pt too wide) in paragraph at lines 12397--12397 []\T1/pcr/m/n/9 ## pointer vectors can be used, and the (i,x) slots are sorted if necessary:[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 12398--12398 []\T1/pcr/m/n/9 m <- sparseMatrix(i = c(3,1, 3:2, 2:1), p= c(0:2, 4,4,6), x = 1:6, dimnames = dn)[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 12424--12424 []\T1/pcr/m/n/9 ## pointers example in converting from other sparse matrix rep resentations.[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 12427--12427 [] \T1/pcr/m/n/9 nzchar(dfil <- system.file("extdata", "rua_32_ax.rua", pack age = "SparseM"))) {[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 12429--12429 [] \T1/pcr/m/n/9 XX <- sparseMatrix(j = X@ja, p = X@ia - 1L, x = X@ra, dims = X@dimension)[] [2538] Underfull \hbox (badness 6842) in paragraph at lines 12519--12522 []\T1/pcr/m/n/10 (x = "sparseMatrix", logarithm=TRUE)[]\T1/ptm/m/n/10 : [][][]\ T1/pcr/m/n/10 determinant[][][]() []\T1/ptm/m/n/10 meth-ods Underfull \hbox (badness 10000) in paragraph at lines 12554--12558 [][][]\T1/pcr/m/n/10 sparseMatrix[][][][]\T1/ptm/m/n/10 , and its ref-er-ences, such as [][][]\T1/pcr/m/n/10 xtabs[][][](*, sparse=TRUE)[]\T1/ptm/m/n/10 , or [2539] [2540] Underfull \hbox (badness 2961) in paragraph at lines 12738--12741 []\T1/pcr/m/n/10 signature(from = "sparseQR", logarithm = "logical")[]\T1/ptm/m /n/10 : com- [2541] Underfull \hbox (badness 3229) in paragraph at lines 12816--12820 []\T1/ptm/m/n/10 The many aux-il-iary func-tions for QR fac-tor-iza-tions: [][] []\T1/pcr/m/n/10 qr.Q[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 qr.R[][][][] \T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 qr.X[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc r/m/n/10 qr.coef[][][][]\T1/ptm/m/n/10 , [2542] Overfull \hbox (9.78043pt too wide) in paragraph at lines 12856--12856 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m atrix"), ...)[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12864--12864 [] \T1/pcr/m/n/9 new("pMatrix", Dim = c(m, m), Dimnames = c(dn[1L ], list(NULL)),[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12867--12867 [] \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list( NULL), dn[2L]),[] Underfull \vbox (badness 10000) has occurred while \output is active [2543] Overfull \hbox (42.18039pt too wide) in paragraph at lines 12886--12886 [] \T1/pcr/m/n/9 ae2(qrc <- qr.coef (qr.A, b), with(e.qr.A, solve(R1 %*% P 2., t(qrQ)) %*% b))[] Underfull \hbox (badness 5036) in paragraph at lines 12921--12923 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2544] Underfull \hbox (badness 2970) in paragraph at lines 13044--13050 []\T1/ptm/m/n/10 Sparse Vec-tor Classes: The vir-tual mother class []\T1/pcr/m/ n/10 "sparseVector" []\T1/ptm/m/n/10 has the five ac- Underfull \hbox (badness 3679) in paragraph at lines 13044--13050 \T1/ptm/m/n/10 tual daugh-ter classes []\T1/pcr/m/n/10 "dsparseVector"[]\T1/ptm /m/n/10 , []\T1/pcr/m/n/10 "isparseVector"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 " lsparseVector"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 13089--13092 []\T1/pcr/m/n/10 signature(x = "sparseVector", mode = "character") []\T1/ptm/m/ n/10 co-erces sparse [2545] Underfull \hbox (badness 10000) in paragraph at lines 13123--13128 []\T1/pcr/m/n/10 (x = "nsparseVector")[]\T1/ptm/m/n/10 : re-turn [][][]\T1/pcr/ m/n/10 logical[][][] []\T1/ptm/m/n/10 or Underfull \hbox (badness 10000) in paragraph at lines 13141--13143 [][][]\T1/pcr/m/n/10 sparseVector[][][]() []\T1/ptm/m/n/10 for friendly con-str uc-tion of sparse vec-tors (apart from []\T1/pcr/m/n/10 as(*, [2546] Underfull \vbox (badness 10000) has occurred while \output is active [2547] Overfull \hbox (24.78088pt too wide) in paragraph at lines 13237--13237 []\T1/pcr/m/n/10 spMatrix(nrow, ncol, i = integer(0L), j = integer(0L), x = do uble(0L)) Underfull \hbox (badness 2310) in paragraph at lines 13264--13270 [][][]\T1/pcr/m/n/10 Matrix[][][](*, sparse=TRUE) []\T1/ptm/m/n/10 for the more usual con-struc-tor of such ma-tri-ces. Then, [2548]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.[<. Rdash.}) has been already used, duplicate ignored \relax l.13316 ...\Rdash{}}{subassign-methods}{[<.Rdash.} Underfull \hbox (badness 6910) in paragraph at lines 13403--13405 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2549]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.[}) has been already used, duplicate ignored \relax l.13450 \aliasA{[}{subscript-methods}{[} [2550] Underfull \hbox (badness 2591) in paragraph at lines 13585--13590 \T1/ptm/m/n/10 Classes [][][]\T1/pcr/m/n/10 triangularMatrix[][][][]\T1/ptm/m/n /10 , and, e.g., [][][]\T1/pcr/m/n/10 dsyMatrix[][][] []\T1/ptm/m/n/10 for nu-m eric \T1/ptm/m/it/10 dense \T1/ptm/m/n/10 ma-tri-ces, or [2551] Underfull \hbox (badness 2057) in paragraph at lines 13661--13663 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., Underfull \hbox (badness 6396) in paragraph at lines 13670--13674 []\T1/pcr/m/n/10 symmpart(x) []\T1/ptm/m/n/10 re-turns a sym-met-ric ma-trix, i n-her-it-ing from [][][]\T1/pcr/m/n/10 symmetricMatrix[][][] []\T1/ptm/m/n/10 o r [2552] Underfull \hbox (badness 7722) in paragraph at lines 13675--13680 []\T1/pcr/m/n/10 skewpart(x) []\T1/ptm/m/n/10 re-turns a skew-symmetric ma-trix , in-her-it-ing from [][][]\T1/pcr/m/n/10 generalMatrix[][][][]\T1/ptm/m/n/10 , [2553] Underfull \hbox (badness 6641) in paragraph at lines 13752--13755 []\T1/ptm/m/n/10 Currently, [][][]\T1/pcr/m/n/10 Schur[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 isSymmetric[][][] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 as () []\T1/ptm/m/n/10 (i.e. [][][]\T1/pcr/m/n/10 coerce[][][][]\T1/ptm/m/n/10 ) h ave meth-ods with Underfull \hbox (badness 5133) in paragraph at lines 13788--13792 []\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 "TsparseMatrix" []\T1/ptm/m/n/10 class is the vir-tual class of all sparse ma-tri-ces coded in Underfull \hbox (badness 2818) in paragraph at lines 13788--13792 \T1/ptm/m/n/10 triplet form. Since it is a vir-tual class, no ob-jects may be c re-ated from it. See [2554] [2555] Underfull \hbox (badness 1668) in paragraph at lines 13915--13918 [][][]\T1/pcr/m/n/10 pack[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 unpac k[][][][]\T1/ptm/m/n/10 ; its vir-tual "com-ple-ment" []\T1/pcr/m/n/10 "[][]pac kedMatrix[][][]"[]\T1/ptm/m/n/10 ; its proper sub-classes [2556] Underfull \hbox (badness 10000) in paragraph at lines 14026--14032 []\T1/ptm/m/n/10 GAL lat-tice file `\T1/pcr/m/n/10 usc_q.GAL\T1/ptm/m/n/10 ' (r e-trieved in 2008 from [2557] [2558] [2559]) (./boot-pkg.tex [2560] Chapter 18. [2561] [2562] [2563] [2564] [2565] [2566] [2567] Overfull \hbox (12.78088pt too wide) in paragraph at lines 532--532 []\T1/pcr/m/n/10 boot(data, statistic, R, sim = "ordinary", stype = c("i", "f" , "w"), [2568] Underfull \hbox (badness 1325) in paragraph at lines 570--577 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sim-u-la-tion r e-quired. Pos-si-ble Underfull \hbox (badness 1275) in paragraph at lines 585--590 []\T1/ptm/m/n/10 An in-te-ger vec-tor or fac-tor spec-i-fy-ing the strata for m ulti-sample prob- [2569] [2570] [2571] Underfull \hbox (badness 1881) in paragraph at lines 826--828 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. Underfull \hbox (badness 6493) in paragraph at lines 853--857 [][][]\T1/pcr/m/n/10 boot.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 bo ot.ci[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 censboot[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/pcr/m/n/10 empinf[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 j ack.after.boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 tilt.boot[][][][]\T 1/ptm/m/n/10 , [2572] Overfull \hbox (4.38043pt too wide) in paragraph at lines 887--887 []\T1/pcr/m/n/9 nuke.lm <- glm(log(cost) ~ date+log(cap)+ne+ct+log(cum.n)+pt, data = nuke)[] Underfull \vbox (badness 10000) has occurred while \output is active [2573] [2574] [2575] Underfull \hbox (badness 1496) in paragraph at lines 1084--1093 []\T1/ptm/m/n/10 If sup-plied, a value to be used as an es-ti-mate of the vari- ance of the Underfull \hbox (badness 2005) in paragraph at lines 1084--1093 \T1/ptm/m/n/10 statis-tic for the nor-mal ap-prox-i-ma-tion and stu-den-tized i n-ter-vals. If it Underfull \hbox (badness 2343) in paragraph at lines 1084--1093 \T1/ptm/m/n/10 is not sup-plied and []\T1/pcr/m/n/10 length(index) []\T1/ptm/m/ n/10 is 2 then []\T1/pcr/m/n/10 var.t0 []\T1/ptm/m/n/10 de-faults to Underfull \hbox (badness 2150) in paragraph at lines 1105--1111 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2576] [2577] [2578] [2579] Underfull \hbox (badness 1571) in paragraph at lines 1445--1447 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2580] [2581] [2582] [2583] [2584] Overfull \hbox (12.78088pt too wide) in paragraph at lines 1738--1738 []\T1/pcr/m/n/10 censboot(data, statistic, R, F.surv, G.surv, strata = matrix( 1,n,2), [2585] [2586] [2587] Underfull \vbox (badness 10000) has occurred while \output is active [2588] Overfull \hbox (31.3804pt too wide) in paragraph at lines 2013--2013 []\T1/pcr/m/n/9 mel.cox <- coxph(Surv(time, status == 1) ~ ns(thickness, df=4) + strata(ulcer),[] [2589] Underfull \hbox (badness 6268) in paragraph at lines 2084--2086 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2590] [2591] [2592] Underfull \hbox (badness 1565) in paragraph at lines 2338--2343 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2593] Underfull \hbox (badness 4595) in paragraph at lines 2363--2368 \T1/ptm/m/n/10 are passed un-changed ev-ery time []\T1/pcr/m/n/10 boot.out$stat istic []\T1/ptm/m/n/10 is called. Underfull \hbox (badness 1881) in paragraph at lines 2432--2434 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. Underfull \hbox (badness 2057) in paragraph at lines 2440--2441 [][][]\T1/pcr/m/n/10 boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 empinf[] [][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 k3.linear[][][][]\T1/ptm/m/n/10 , [ ][][]\T1/pcr/m/n/10 linear.approx[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 saddle.distn[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 smooth.spline[][][][] \T1/ptm/m/n/10 , [2594] [2595] Underfull \hbox (badness 1077) in paragraph at lines 2536--2540 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of []\T1/pcr/m /n/10 n/((n-1)*(n-2)) []\T1/ptm/m/n/10 where []\T1/pcr/m/n/10 n []\T1/ptm/m/n/1 0 is the sam-ple Underfull \hbox (badness 1112) in paragraph at lines 2536--2540 \T1/ptm/m/n/10 size, if []\T1/pcr/m/n/10 unbiased []\T1/ptm/m/n/10 is []\T1/pcr /m/n/10 FALSE []\T1/ptm/m/n/10 then a mul-ti-plier of []\T1/pcr/m/n/10 1/n []\T 1/ptm/m/n/10 is used. This is mul-ti-plied by [2596] [2597] [2598] [2599] [2600] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2895--2895 []\T1/pcr/m/n/10 EEF.profile(y, tmin = min(y) + 0.1, tmax = max(y) - 0.1, n.t = 25, Overfull \hbox (18.78088pt too wide) in paragraph at lines 2897--2897 []\T1/pcr/m/n/10 EL.profile(y, tmin = min(y) + 0.1, tmax = max(y) - 0.1, n.t = 25,[] [2601] [2602] [2603] Underfull \hbox (badness 3861) in paragraph at lines 3105--3108 [][][]\T1/pcr/m/n/10 boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 boot.arr ay[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 boot.ci[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 control[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 jack .after.boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 linear.approx[][][][]\ T1/ptm/m/n/10 , [2604] Overfull \hbox (36.78088pt too wide) in paragraph at lines 3158--3158 []\T1/pcr/m/n/10 envelope(boot.out = NULL, mat = NULL, level = 0.95, index = 1 :ncol(mat)) [2605] [2606] [2607] Overfull \hbox (9.78043pt too wide) in paragraph at lines 3378--3378 []\T1/pcr/m/n/9 # Example 9.8 of Davison and Hinkley (1997) requires tilting t he resampling [2608] [2609] [2610] [2611] [2612] [2613] [2614] Overfull \hbox (18.78088pt too wide) in paragraph at lines 3838--3838 [] \T1/pcr/m/n/10 t = boot.out$t[, index], w = NULL, def = TRUE, q = NULL)[] [2615] [2616] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3977--3977 []\T1/pcr/m/n/9 grav.p <- imp.prob(grav.tilt.boot, w = grav.w, index = 3, t0 = grav.z0[3])[] [2617] [2618] [2619] [2620] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4259--4259 []\T1/pcr/m/n/9 # To draw the jackknife-after-bootstrap plot for the head siz e data as in [2621] [2622] Underfull \hbox (badness 10000) in paragraph at lines 4362--4364 []\T1/ptm/m/n/10 The in-dex of the vari-able of in-ter-est within the out-put o f Underfull \hbox (badness 1430) in paragraph at lines 4371--4375 \T1/ptm/m/n/10 If []\T1/pcr/m/n/10 t0 []\T1/ptm/m/n/10 is sup-plied but nei-the r []\T1/pcr/m/n/10 t []\T1/ptm/m/n/10 nor []\T1/pcr/m/n/10 L []\T1/ptm/m/n/10 a re sup-plied then []\T1/pcr/m/n/10 t0 []\T1/ptm/m/n/10 is set to [2623] [2624] [2625] [2626] [2627] [2628] [2629] [2630] [2631] Underfull \hbox (badness 3000) in paragraph at lines 4959--4962 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2632] [2633] [2634] [2635] Underfull \hbox (badness 2293) in paragraph at lines 5238--5241 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5238--5241 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2636] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5317--5317 []\T1/pcr/m/n/9 grav.boot <- boot(grav1, grav.fun, R = 499, stype = "w", strat a = grav1[, 2])[] [2637] [2638] [2639] [2640] [2641] [2642] [2643] [2644] Overfull \hbox (15.18042pt too wide) in paragraph at lines 5866--5866 []\T1/pcr/m/n/9 city.sp1$spa[1] <- jacobian(city, 1.25, city.sp1$zeta.hat) * c ity.sp1$spa[1][] [2645] Underfull \hbox (badness 1127) in paragraph at lines 5988--6006 []\T1/ptm/m/n/10 etc. un-til a point is found with a cdf ap-prox-i-ma-tion less than []\T1/pcr/m/n/10 min(alpha)/10[]\T1/ptm/m/n/10 , then [2646] Underfull \hbox (badness 2837) in paragraph at lines 6021--6024 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class []\T1/pcr/m/n/10 "s addle.distn"[]\T1/ptm/m/n/10 . See the help file for [2647] [2648] [2649] [2650] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6306--6306 []\T1/pcr/m/n/9 # This example is taken from Exercise 7.5 of Gill, Murray and Wright (1991). [2651] [2652] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6495--6495 []\T1/pcr/m/n/9 # Example 9.8 of Davison and Hinkley (1997) requires tilting t he resampling Overfull \hbox (20.58041pt too wide) in paragraph at lines 6497--6497 []\T1/pcr/m/n/9 # value of the test statistic 1.84. In the book exponential t ilting was used[] [2653] [2654] [2655] Underfull \hbox (badness 1596) in paragraph at lines 6742--6746 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2656] [2657] Overfull \hbox (20.58041pt too wide) in paragraph at lines 6902--6902 [] \T1/pcr/m/n/9 stype = "i", sim = "balanced", alpha = c(0.05, 0.95),[] [2658] [2659] [2660] [2661] [2662] [2663] [2664] [2665]) (./class-pkg.tex [2666] Chapter 19. [2667] [2668] [2669] [2670] [2671] [2672] [2673] [2674] [2675] [2676] [2677] [2678] [2679] [2680] Overfull \hbox (42.18039pt too wide) in paragraph at lines 1006--1006 [] \T1/pcr/m/n/9 alpha = list(seq(0.05, 0, length.out = 1e4), seq(0.02, 0, length.out = 1e5)),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1007--1007 [] \T1/pcr/m/n/9 radii = list(seq(8, 1, length.out = 1e4), seq(4, 1, length .out = 1e5)))[] [2681] [2682]) (./cluster-pkg.tex Chapter 20. [2683] [2684] [2685] Overfull \hbox (42.18039pt too wide) in paragraph at lines 253--253 [] \T1/pcr/m/n/9 all.equal(a.wgt [iC], agnes(d.vr, method="flexible", par.met hod = 0.5)[iC]) ,[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 254--254 [] \T1/pcr/m/n/9 all.equal(a.sing[iC], agnes(d.vr, method="flex", par.method= c(.5,.5,0, -.5))[iC]),[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 255--255 [] \T1/pcr/m/n/9 all.equal(a.comp[iC], agnes(d.vr, method="flex", par.method= c(.5,.5,0, +.5))[iC]))[] [2686] [2687] Underfull \vbox (badness 10000) has occurred while \output is active [2688] [2689] Overfull \hbox (18.78088pt too wide) in paragraph at lines 519--519 [] \T1/pcr/m/n/10 col = c(2, 0), border = 0, axes = TRUE, frame.plot = axes,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 523--523 [] \T1/pcr/m/n/10 yaxRight = fromLeft, y.mar = 2.4 + max.strlen/2.5, ...)[] [2690] [2691] Overfull \hbox (66.78088pt too wide) in paragraph at lines 638--638 [] \T1/pcr/m/n/10 keep.data = medoids.x, rngR = FALSE, pamLike = FALSE, c orrect.d = TRUE)[] [2692] [2693] [2694] Underfull \hbox (badness 2941) in paragraph at lines 792--795 [][][]\T1/pcr/m/n/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-en ces; [][][]\T1/pcr/m/n/10 clara.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/ n/10 pam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 partition.object[][][][]\ T1/ptm/m/n/10 , Overfull \hbox (4.38043pt too wide) in paragraph at lines 833--833 [] \T1/pcr/m/n/9 cl[,i] <- clara(xclara, nCl, medoids.x = FALSE, rngR = TRUE )$clustering[] [2695] Overfull \hbox (9.78043pt too wide) in paragraph at lines 835--835 []\T1/pcr/m/n/9 ## those that are not always in same cluster (5 out of 3000 fo r this seed):[] Underfull \hbox (badness 10000) in paragraph at lines 882--884 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2696] Overfull \hbox (24.78088pt too wide) in paragraph at lines 947--947 [] \T1/pcr/m/n/10 arrowArgs = list(col="red3", length=1/16, angle=90, code =3), ...)[] [2697] Underfull \hbox (badness 4872) in paragraph at lines 992--994 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 1006--1010 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2698] Underfull \hbox (badness 2503) in paragraph at lines 1092--1096 []\T1/ptm/m/n/10 Per Broberg (2006). SAGx: Sta-tis-ti-cal Anal-y-sis of the Gen eChip. R pack-age ver- [2699] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1118--1118 [] \T1/pcr/m/n/9 sapply(mets, function(M) maxSE(fk, sk, method = M, SE. factor = SEf)))[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 1135--1135 []\T1/pcr/m/n/9 ## You can manually set it before running this : doExtras < - TRUE # or FALSE[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1144--1144 [] \T1/pcr/m/n/9 gskmn <- clusGap(x, FUNcluster = kmeans, nstart = 20, K.max = 8, B = 60)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1146--1146 [] \T1/pcr/m/n/9 plot(gskmn, main = "clusGap(., FUNcluster = kmeans, n.start= 20, B= 60)")[] Underfull \vbox (badness 10000) has occurred while \output is active [2700] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1173--1173 []\T1/pcr/m/n/9 plot(gsP.Z, main = "clusGap() ==> k = 1 clust er is optimal")[] Underfull \hbox (badness 4144) in paragraph at lines 1205--1209 []\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 does not have a []\T1 /pcr/m/n/10 diss []\T1/ptm/m/n/10 nor a []\T1/pcr/m/n/10 data []\T1/ptm/m/n/10 com-po-nent, e.g., for [2701] Overfull \hbox (60.78088pt too wide) in paragraph at lines 1281--1281 [] \T1/pcr/m/n/10 col.clus = if(color) c(2, 4, 6, 3) else 5, cex = 1, cex.txt = cex,[] Overfull \hbox (72.78088pt too wide) in paragraph at lines 1287--1287 [] \T1/pcr/m/n/10 round(100 * var.dec, digits = 2), "% of the poin t variability."),[] [2702] [2703] [2704] Underfull \hbox (badness 10000) in paragraph at lines 1474--1477 Underfull \hbox (badness 10000) in paragraph at lines 1488--1492 [][][]\T1/pcr/m/n/10 princomp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cmds cale[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pam[][][][]\T1/ptm/m/n/10 , [ ][][]\T1/pcr/m/n/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 daisy[][ ][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 par[][][][]\T1/ptm/m/n/10 , [][][]\T 1/pcr/m/n/10 identify[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cov.mve[][][ ][]\T1/ptm/m/n/10 , Overfull \hbox (31.3804pt too wide) in paragraph at lines 1512--1512 []\T1/pcr/m/n/9 clusplot(pamv, col.p = votes.clus, labels = 4)# color points a nd label ellipses[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 1522--1522 [] \T1/pcr/m/n/9 clusplot(votes.diss, votes.clus, diss = TRUE, labels = 5)# i dent. only points[] [2705] Underfull \hbox (badness 5741) in paragraph at lines 1562--1565 []\T1/pcr/m/n/10 coefHier() []\T1/ptm/m/n/10 di-rectly in-ter-faces to the un-d er-ly-ing C code, and ``proves'' that \T1/ptm/m/it/10 only [2706] Overfull \hbox (12.78088pt too wide) in paragraph at lines 1631--1631 [] \T1/pcr/m/n/10 warnBin = warnType, warnAsym = warnType, warnConst = wa rnType,[] [2707] Underfull \hbox (badness 1552) in paragraph at lines 1680--1682 []\T1/ptm/b/n/10 A\T1/ptm/m/n/10 symmetric bi-nary vari-able, aka []\T1/pcr/m/n /10 "A" []\T1/ptm/m/n/10 in re-sult []\T1/pcr/m/n/10 Types[]\T1/ptm/m/n/10 , se e Underfull \hbox (badness 1629) in paragraph at lines 1694--1698 []\T1/ptm/b/n/10 I\T1/ptm/m/n/10 nterval scaled -- the \T1/ptm/b/n/10 de-fault \T1/ptm/m/n/10 for all nu-meric Underfull \hbox (badness 3746) in paragraph at lines 1694--1698 \T1/ptm/m/n/10 (incl []\T1/pcr/m/n/10 integer[]\T1/ptm/m/n/10 ) columns of []\T 1/pcr/m/n/10 x[]\T1/ptm/m/n/10 , aka []\T1/pcr/m/n/10 "I" []\T1/ptm/m/n/10 in r e-sult []\T1/pcr/m/n/10 Types[]\T1/ptm/m/n/10 , see [2708] Underfull \hbox (badness 1540) in paragraph at lines 1769--1777 \T1/ptm/m/n/10 In other words, $\OML/cmm/m/it/10 d[]$ \T1/ptm/m/n/10 is a weigh ted mean of $\OML/cmm/m/it/10 d[]$ \T1/ptm/m/n/10 with weights $\OML/cmm/m/it/1 0 w[]^^N[]$\T1/ptm/m/n/10 , where $\OML/cmm/m/it/10 w[]$[]\T1/pcr/m/n/10 = [2709] Overfull \hbox (25.98041pt too wide) in paragraph at lines 1856--1856 []\T1/pcr/m/n/9 ## Example 2 in reference, extended --- different ways of "m ixed" / "gower":[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1860--1860 []\T1/pcr/m/n/9 summary(d0 <- daisy(flower)) # -> the first 3 {0,1} treate d as *N*ominal[] Overfull \hbox (90.78033pt too wide) in paragraph at lines 1861--1861 []\T1/pcr/m/n/9 summary(dS123 <- daisy(flower, type = list(symm = 1:3))) # fi rst 3 treated as *S*ymmetric[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 1862--1862 []\T1/pcr/m/n/9 stopifnot(dS123 == d0) # i.e., *S*ymmetric <==> *N*ominal {fo r 2-level factor}[] Overfull \hbox (106.98032pt too wide) in paragraph at lines 1866--1866 []\T1/pcr/m/n/9 summary(dA123 <- daisy(flowerN)) # .. all 3 logicals treated * A*symmetric binary (w/ warning)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1868--1868 []\T1/pcr/m/n/9 summary(dA13 <- daisy(flower, type = list(asymm = c(1, 3), ord ratio = 7)))[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1875--1875 []\T1/pcr/m/n/9 Nflow[,1:3] <- lapply(flower[,1:3], function(f) as.integer(as. character(f)))[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1876--1876 []\T1/pcr/m/n/9 summary(dN <- daisy(Nflow)) # w/ warning: treated binary .. 1: 3 as interval[] Overfull \hbox (117.7803pt too wide) in paragraph at lines 1877--1877 []\T1/pcr/m/n/9 ## Still, using Euclidean/Manhattan distance for {0-1} *is* id entical to treating them as "N" :[] Overfull \hbox (42.78088pt too wide) in paragraph at lines 1893--1893 []\T1/pcr/m/n/10 diana(x, diss = inherits(x, "dist"), metric = "euclidean", st and = FALSE, [2710] [2711] [2712] [2713] [2714] Underfull \hbox (badness 10000) in paragraph at lines 2212--2215 Underfull \hbox (badness 3179) in paragraph at lines 2223--2229 [][][]\T1/pcr/m/n/10 predict.ellipsoid[][][] []\T1/ptm/m/n/10 which is also the [][][]\T1/pcr/m/n/10 predict[][][] []\T1/ptm/m/n/10 method for []\T1/pcr/m/n/1 0 ellipsoid []\T1/ptm/m/n/10 ob-jects. [2715] [2716] Underfull \hbox (badness 10000) in paragraph at lines 2380--2383 [][][]\T1/pcr/m/n/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-en ces; [][][]\T1/pcr/m/n/10 fanny.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/ n/10 partition.object[][][][]\T1/ptm/m/n/10 , [2717] Underfull \hbox (badness 1292) in paragraph at lines 2448--2451 []\T1/ptm/m/n/10 named vec-tor with []\T1/pcr/m/n/10 iterations[]\T1/ptm/m/n/10 , the num-ber of it-er-a-tions needed and [2718] Underfull \hbox (badness 6675) in paragraph at lines 2457--2459 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see Underfull \hbox (badness 10000) in paragraph at lines 2480--2483 [][][]\T1/pcr/m/n/10 fanny[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.f anny[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 dissimilarity.object[][][][]\ T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 partition.object[][][][]\T1/ptm/m/n/10 , [2719] Overfull \hbox (15.18042pt too wide) in paragraph at lines 2555--2555 [] \T1/pcr/m/n/9 "4" = "red", "5" = "blue")[levels(f lowerN$color)][] Overfull \hbox (90.78033pt too wide) in paragraph at lines 2556--2556 []\T1/pcr/m/n/9 levels(flowerN$soil) <- c("1" = "dry", "2" = "normal", "3" = "wet")[levels(flowerN$soil)][] [2720] Overfull \hbox (48.78088pt too wide) in paragraph at lines 2619--2619 []\T1/pcr/m/n/10 medoids(x, clustering, diss = inherits(x, "dist"), USE.NAMES = FALSE, ...) [2721] Overfull \hbox (69.18036pt too wide) in paragraph at lines 2666--2666 [] \T1/pcr/m/n/9 stopifnot(length(cl.k) == nrow(votes.repub), 1 <= cl.k, cl.k <= k, table(cl.k) >= 2)[] [2722] Overfull \hbox (15.18042pt too wide) in paragraph at lines 2771--2771 []\T1/pcr/m/n/9 ## One place to see if/how error messages are *translated* (to \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 de\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 / \TS1/pcr/m/n/ 9 '\T1/pcr/m/n/9 pl\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ):[] [2723] Overfull \hbox (42.78088pt too wide) in paragraph at lines 2850--2850 [] \T1/pcr/m/n/10 variant = c("original", "o_1", "o_2", "f_3", "f_4", "f_5" , "faster"),[] [2724] [2725] [2726] [2727] Overfull \hbox (85.38034pt too wide) in paragraph at lines 3078--3078 []\T1/pcr/m/n/9 ## use obs. 1 & 16 as starting medoids -- same result (for see d above, *and* typically) :[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3080--3080 []\T1/pcr/m/n/9 ## no _build_ *and* no _swap_ phase: just cluster all obs. aro und (1, 16):[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 3083--3083 []\T1/pcr/m/n/9 keep_nms <- setdiff(names(pamx), c("call", "objective"))# .$ob jective["build"] differ[] [2728] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3187--3187 []\T1/pcr/m/n/9 axis(1, k.best, paste("best",k.best,sep="\n"), col = "red", co l.axis = "red")[] [2729] [2730] [2731] Overfull \hbox (78.78088pt too wide) in paragraph at lines 3381--3381 [] \T1/pcr/m/n/10 sub = paste("Agglomerative Coefficient = ",round(x $ac, digits = 2)),[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 3382--3382 [] \T1/pcr/m/n/10 adj = 0, nmax.lab = 35, max.strlen = 5, xax.pretty = TRUE, ...)[] [2732] Underfull \hbox (badness 10000) in paragraph at lines 3449--3452 []\T1/ptm/m/n/10 For the den-dro-gram, more flex-i-bil-ity than via []\T1/pcr/m /n/10 pltree() []\T1/ptm/m/n/10 is pro-vided by []\T1/pcr/m/n/10 dg <- [2733] Overfull \hbox (54.78088pt too wide) in paragraph at lines 3499--3499 [] \T1/pcr/m/n/10 sub = paste("Divisive Coefficient = ", round(x$dc, digits = 2)),[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 3500--3500 [] \T1/pcr/m/n/10 adj = 0, nmax.lab = 35, max.strlen = 5, xax.pretty = TRUE, ...)[] [2734] [2735] [2736] Underfull \hbox (badness 10000) in paragraph at lines 3685--3688 []\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 does not have a []\T1 /pcr/m/n/10 diss []\T1/ptm/m/n/10 com-po-nent as for [][][]\T1/pcr/m/n/10 pam[] [][](*, Underfull \hbox (badness 1448) in paragraph at lines 3685--3688 \T1/pcr/m/n/10 keep.diss=FALSE)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 dist []\T1/p tm/m/n/10 must be the dis-sim-i-lar-ity if a clus-plot is [2737] Underfull \hbox (badness 10000) in paragraph at lines 3748--3753 [][][]\T1/pcr/m/n/10 partition.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n /10 clusplot.partition[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 clusplot.de fault[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pam[][][][]\T1/ptm/m/n/10 , [2738] Underfull \hbox (badness 1748) in paragraph at lines 3810--3815 \T1/ptm/m/n/10 dis-patches to [][][]\T1/pcr/m/n/10 plot.hclust[][][](..)[]\T1/p tm/m/n/10 . If more flex-i-ble plots are needed, con-sider []\T1/pcr/m/n/10 xx <- Underfull \hbox (badness 6268) in paragraph at lines 3822--3825 [][][]\T1/pcr/m/n/10 agnes[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 agnes.o bject[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 diana[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 diana.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/1 0 hclust[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 par[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.agnes[][][][]\T1/ptm/m/n/10 , [2739] Underfull \hbox (badness 10000) in paragraph at lines 3883--3885 []\T1/ptm/m/n/10 Available as `\T1/pcr/m/n/10 pluton.dat\T1/ptm/m/n/10 ' from t he archive of the Uni-ver-sity of Antwer-pen, [2740] [2741] Underfull \hbox (badness 10000) in paragraph at lines 4002--4005 [][][]\T1/pcr/m/n/10 summary.agnes[][][] []\T1/ptm/m/n/10 pro-duc-ing more out- put; [][][]\T1/pcr/m/n/10 agnes[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 ag nes.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/ n/10 , [2742] Underfull \hbox (badness 10000) in paragraph at lines 4033--4036 [][][]\T1/pcr/m/n/10 summary.clara[][][] []\T1/ptm/m/n/10 pro-duc-ing more out- put; [][][]\T1/pcr/m/n/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cl ara.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/ n/10 , [2743] Overfull \hbox (36.78088pt too wide) in paragraph at lines 4086--4086 [] \T1/pcr/m/n/10 digits = getOption("digits"), justify = "none", right = TRUE, ...)[] Underfull \hbox (badness 2035) in paragraph at lines 4097--4099 []\T1/ptm/m/n/10 a []\T1/pcr/m/n/10 dissimilarity []\T1/ptm/m/n/10 ob-ject or a []\T1/pcr/m/n/10 summary.dissimilarity []\T1/ptm/m/n/10 one for [2744] [2745] [2746] Overfull \hbox (54.78088pt too wide) in paragraph at lines 4290--4290 [] \T1/pcr/m/n/10 main = NULL, sub = NULL, xlab = expression("Silhouette w idth "* s[i]),[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 4292--4292 [] \T1/pcr/m/n/10 cex.names = par("cex.axis"), do.n.k = TRUE, do.clus.stat = TRUE, ...)[] [2747] [2748] Overfull \hbox (31.3804pt too wide) in paragraph at lines 4434--4434 []\T1/pcr/m/n/9 plot(si, col = c("red", "green", "blue", "purple"))# with clus ter-wise coloring[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 4443--4443 [] \T1/pcr/m/n/9 plot(silhouette(pam(ruspini, k=k)), main = paste("k = ",k), do.n.k=FALSE)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 4445--4445 [] \T1/pcr/m/n/9 outer = TRUE, font = par("font.main"), cex = par("cex.ma in")); frame()[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 4448--4448 []\T1/pcr/m/n/9 c6 <- c("tomato", "forest green", "dark blue", "purple2", "gol denrod4", "gray20")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 4450--4450 [] \T1/pcr/m/n/9 plot(silhouette(pam(ruspini, k=k)), main = paste("k = ",k), do.n.k=FALSE,[] [2749] Overfull \hbox (31.3804pt too wide) in paragraph at lines 4457--4457 []\T1/pcr/m/n/9 str(xc1k <- xclara[ sample(nrow(xclara), size = 1000) ,]) # ro wnames == indices[] [2750] [2751] [2752] [2753] [2754] [2755] Underfull \hbox (badness 10000) in paragraph at lines 4828--4834 []\T1/ptm/m/n/10 Our ver-sion of the []\T1/pcr/m/n/10 xclara []\T1/ptm/m/n/10 i s slightly more rounded than the one from Underfull \hbox (badness 10000) in paragraph at lines 4844--4846 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/pcr/m/n/10 xclara.dat\T1/ptm/m/n/10 ' in side Overfull \hbox (52.98038pt too wide) in paragraph at lines 4857--4857 []\T1/pcr/m/n/9 ## Visualization: Assuming groups are defined as {1:1000}, {10 01:2000}, {2001:3000} Overfull \hbox (9.78043pt too wide) in paragraph at lines 4859--4859 []\T1/pcr/m/n/9 p.ID <- c(78, 1411, 2535) ## PAM\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s medoid indices == pam(xclara, 3)$id.med[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4869--4869 [] \T1/pcr/m/n/9 ## We see 3 + 2 + 2 = 7 clear "outlier"s or "wrong group" o bservations:[] [2756] Overfull \hbox (20.58041pt too wide) in paragraph at lines 4873--4873 [] \T1/pcr/m/n/9 ## Apart from these, what are the robust ranges of indices? - - Robust range:[] [2757]) (./codetools-pkg.tex [2758] Chapter 21. Overfull \hbox (24.78088pt too wide) in paragraph at lines 16--16 [] \T1/pcr/m/n/10 suppressParamUnused = !all, suppressFundefMismatch = FALSE,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 17--17 [] \T1/pcr/m/n/10 suppressLocalUnused = FALSE, suppressNoLocalFun = !all,[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 18--18 [] \T1/pcr/m/n/10 skipWith = FALSE, suppressUndefined = dfltSuppress Undefined,[] [2759] Underfull \hbox (badness 10000) in paragraph at lines 65--70 []\T1/pcr/m/n/10 checkUsageEnv []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 checkUsage Package []\T1/ptm/m/n/10 are con-ve-nience func-tions that ap-ply [2760] Overfull \hbox (18.78088pt too wide) in paragraph at lines 118--118 []\T1/pcr/m/n/10 makeConstantFolder(..., leaf, handler, call, exit, isLocal, f oldable,[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 121--121 []\T1/pcr/m/n/10 makeUsageCollector(fun, ..., name, enterLocal, enterGlobal, e nterInternal,[] [2761] [2762] [2763]) (./foreign-pkg.tex [2764] Chapter 22. Underfull \hbox (badness 10000) in paragraph at lines 33--37 []\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o ut of a Data Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/ptm/m/n/10 Set in SAS Trans-port (XPORT) For-mat'' avail-able as [][]$\T1/p cr/m/n/10 https : / / support . Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/pcr/m/n/10 sas . com / content / dam / SAS / support / en / technical-[]pap ers / Overfull \hbox (74.28088pt too wide) in paragraph at lines 33--37 \T1/pcr/m/n/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[]s et-[]in-[]sas-[]transport-[]xport-[]format . [2765] Underfull \hbox (badness 1231) in paragraph at lines 67--70 []\T1/ptm/m/n/10 a char-ac-ter string with the name of the ARFF file to read fr om, or a [2766] [2767] Underfull \hbox (badness 3601) in paragraph at lines 234--242 []\T1/ptm/m/n/10 A data frame with at-tributes. These will in-clude []\T1/pcr/m /n/10 "datalabel"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "time.stamp"[]\T1/ptm/m/n/ 10 , [2768] Overfull \hbox (12.78088pt too wide) in paragraph at lines 292--292 []\T1/pcr/m/n/10 read.epiinfo(file, read.deleted = FALSE, guess.broken.dates = FALSE, [2769] [2770] [2771] Overfull \hbox (48.78088pt too wide) in paragraph at lines 458--458 [] \T1/pcr/m/n/10 trim_values = TRUE, reencode = NA, use.missings = t o.data.frame,[] [2772] Overfull \hbox (30.78088pt too wide) in paragraph at lines 459--459 [] \T1/pcr/m/n/10 sub = ".", add.undeclared.levels = c("sort", "appen d", "no"),[] Underfull \hbox (badness 2846) in paragraph at lines 502--511 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer-ent lev- Underfull \hbox (badness 3746) in paragraph at lines 502--511 \T1/ptm/m/n/10 els. For []\T1/pcr/m/n/10 "append" []\T1/ptm/m/n/10 (the de-faul t), the first orig-i-nal value la-bel is Underfull \hbox (badness 2269) in paragraph at lines 502--511 \T1/ptm/m/n/10 kept while fur-ther du-pli-cated la-bels are re-named to []\T1/p cr/m/n/10 paste0(label, Underfull \hbox (badness 10000) in paragraph at lines 512--515 []\T1/ptm/m/n/10 character: the in-fix used for la-bels of fac-tor lev-els with du- Underfull \hbox (badness 10000) in paragraph at lines 512--515 \T1/ptm/m/n/10 pli-cated value la-bels in SPSS (de-fault []\T1/pcr/m/n/10 "_dup licated_"[]\T1/ptm/m/n/10 ) if [2773] Underfull \hbox (badness 10000) in paragraph at lines 546--554 []\T1/ptm/m/n/10 URL [][]$\T1/pcr/m/n/10 https : / / learn . microsoft . com / en-[]us / windows / win32 / intl / Underfull \hbox (badness 7613) in paragraph at lines 564--570 []\T1/ptm/m/n/10 There may be at-tributes []\T1/pcr/m/n/10 "label.table" []\T1/ ptm/m/n/10 and []\T1/pcr/m/n/10 "variable.labels"[]\T1/ptm/m/n/10 . At-tribute [2774] Overfull \hbox (20.58041pt too wide) in paragraph at lines 619--619 []\T1/pcr/m/n/9 ### hence may need some special treatment with appropriate arg ument settings.[] Overfull \hbox (112.38031pt too wide) in paragraph at lines 620--620 []\T1/pcr/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2775] Overfull \hbox (9.78043pt too wide) in paragraph at lines 653--653 []\T1/pcr/m/n/9 ## Long Strings (>255 chars) are imported in consecutive separ ate variables[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 657--657 []\T1/pcr/m/n/9 cat.long.string <- function(x, w=70) cat(paste(strwrap(x, widt h=w), "\n"))[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 664--664 []\T1/pcr/m/n/9 long.string <- apply(x[,c("string_500", "STRIN0")], 1, paste, collapse="")[] [2776] [2777] Underfull \hbox (badness 10000) in paragraph at lines 808--809 Overfull \hbox (4.38043pt too wide) in paragraph at lines 818--818 []\T1/pcr/m/n/9 iris.s <- read.systat(system.file("files/Iris.syd", package="f oreign")[1])[] [2778] Underfull \hbox (badness 10000) in paragraph at lines 865--869 []\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o ut of a Data Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/ptm/m/n/10 Set in SAS Trans-port (XPORT) For-mat'' avail-able at [][]$\T1/p cr/m/n/10 https : / / support . Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/pcr/m/n/10 sas . com / content / dam / SAS / support / en / technical-[]pap ers / Overfull \hbox (74.28088pt too wide) in paragraph at lines 865--869 \T1/pcr/m/n/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[]s et-[]in-[]sas-[]transport-[]xport-[]format . [2779] Overfull \hbox (24.78088pt too wide) in paragraph at lines 896--896 [] \T1/pcr/m/n/10 data.restore(file, print = FALSE, verbose = FALSE, env = .G lobalEnv) [2780] Overfull \hbox (0.78088pt too wide) in paragraph at lines 960--960 []\T1/pcr/m/n/10 write.arff(x, file, eol = "\n", relation = deparse(substitute (x))) [2781] [2782] Underfull \hbox (badness 10000) in paragraph at lines 1072--1073 [][][]$\T1/pcr/m/n/10 https : / / www . clicketyclick . dk / databases / xbase / format / data _ types . Overfull \hbox (24.78088pt too wide) in paragraph at lines 1108--1108 [] \T1/pcr/m/n/10 convert.factors = c("labels", "string", "numeric", "codes"))[] [2783] [2784] Underfull \hbox (badness 10000) in paragraph at lines 1265--1271 []\T1/ptm/m/n/10 The work for this func-tion is done by []\T1/pcr/m/n/10 foreig n:::writeForeignStata[]\T1/ptm/m/n/10 , [2785] Underfull \hbox (badness 2088) in paragraph at lines 1291--1294 []\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 package="SPSS"[]\T1/ptm/m/n/10 , as a sid e ef-fect, the dec-i-mal in-di-ca-tor is al-ways set by []\T1/pcr/m/n/10 SET [2786]) (./lattice-pkg.tex Chapter 23. [2787] Underfull \hbox (badness 2073) in paragraph at lines 114--118 \T1/ptm/m/n/10 pro-vide a holis-tic in-tro-duc-tion to the Trel-lis paradigm: [ ][]$\T1/pcr/m/n/10 http : / / web . archive . org / Underfull \hbox (badness 10000) in paragraph at lines 114--118 \T1/pcr/m/n/10 web / 20081020164041 / http : / / cm . bell-[]labs . com / cm / ms / departments / sia / [2788] [2789] Overfull \hbox (12.78088pt too wide) in paragraph at lines 288--288 [] \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le vels"),[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 292--292 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default .xyplot"),[] [2790] Overfull \hbox (42.78088pt too wide) in paragraph at lines 303--303 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defaul t.dotplot"),[] Overfull \hbox (54.78088pt too wide) in paragraph at lines 313--313 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defau lt.barchart"),[] Overfull \hbox (66.78088pt too wide) in paragraph at lines 324--324 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defa ult.stripplot"),[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 348--348 [] \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le vels"),[] Underfull \vbox (badness 10000) has occurred while \output is active [2791] Overfull \hbox (30.78088pt too wide) in paragraph at lines 352--352 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default .bwplot"),[] [2792] [2793] [2794] Underfull \hbox (badness 1221) in paragraph at lines 655--658 []\T1/ptm/m/n/10 A log-i-cal, or a list con-tain-ing com-po-nents to be used as ar-gu-ments to [2795] [2796] [2797] [2798] Underfull \hbox (badness 2005) in paragraph at lines 988--1000 []\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether the un-used lev-els of fac-tors will be Underfull \hbox (badness 1199) in paragraph at lines 988--1000 \T1/ptm/m/n/10 some-times ap-pro-pri-ate to sup-press drop-ping to pre-serve a use-ful lay-out. [2799] [2800] Underfull \hbox (badness 1661) in paragraph at lines 1101--1107 []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 y []\T1/ptm/m/n/10 sho uld be num-bers be-tween 0 and 1, giv-ing co-or-di-nates [2801] Underfull \hbox (badness 1097) in paragraph at lines 1227--1229 []\T1/ptm/m/n/10 Logical flag, whether leg-end should have a Underfull \hbox (badness 1917) in paragraph at lines 1241--1242 []\T1/ptm/m/n/10 Space be-tween col-umn blocks, in ad-di-tion to [2802] [2803] [2804] Underfull \hbox (badness 1540) in paragraph at lines 1476--1482 []\T1/ptm/m/n/10 A list con-tain-ing pos-si-ble ar-gu-ments to [][][]\T1/pcr/m/ n/10 plot.trellis[][][][]\T1/ptm/m/n/10 , [2805] Underfull \hbox (badness 10000) in paragraph at lines 1563--1580 [][][]\T1/pcr/m/n/10 panel.dotplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 panel.stripplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 panel.superpose[] [][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 panel.loess[][][][]\T1/ptm/m/n/10 , [2806] Underfull \vbox (badness 10000) has occurred while \output is active [2807] Overfull \hbox (36.7804pt too wide) in paragraph at lines 1651--1651 [] \T1/pcr/m/n/9 text = list(lab = as.character(unique(Orchar dSprays$rowpos))),[] [2808] Underfull \hbox (badness 2012) in paragraph at lines 1705--1707 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][][]\T1/pcr/m/n/10 xyplot[] [][][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1735--1739 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to Underfull \hbox (badness 10000) in paragraph at lines 1752--1755 []\T1/ptm/m/n/10 style set-tings be-yond the stan-dard []\T1/pcr/m/n/10 col[]\T 1/ptm/m/n/10 , []\T1/pcr/m/n/10 lty[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lwd[]\T1 /ptm/m/n/10 , etc; see [2809] Underfull \hbox (badness 10000) in paragraph at lines 1804--1806 []\T1/ptm/m/n/10 Gabor Grothendieck, Achim Zeileis, Deep-ayan Sarkar and Fe-lix An-drews [2810] [2811] [2812] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2045--2045 [] \T1/pcr/m/n/10 auto.key = lattice.getOption("default.args")$auto .key,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2058--2058 [] \T1/pcr/m/n/10 lattice.getOption("prepanel.default.densitypl ot"),[] Underfull \vbox (badness 10000) has occurred while \output is active [2813] Underfull \hbox (badness 10000) in paragraph at lines 2137--2140 []\T1/ptm/m/n/10 When []\T1/pcr/m/n/10 breaks []\T1/ptm/m/n/10 is un-spec-i-fie d, the value of Underfull \hbox (badness 1320) in paragraph at lines 2137--2140 []\T1/pcr/m/n/10 lattice.getOption("histogram.breaks") []\T1/ptm/m/n/10 is firs t checked. If [2814] [2815] [2816] Overfull \hbox (12.78088pt too wide) in paragraph at lines 2342--2342 [] \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le vels"),[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 2346--2346 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default .qqmath"),[] [2817] [2818] [2819] [2820] [2821] Overfull \hbox (60.78088pt too wide) in paragraph at lines 2702--2702 [] \T1/pcr/m/n/10 panel = if (useRaster) lattice.getOption("panel.lev elplot.raster")[] [2822] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2734--2734 [] \T1/pcr/m/n/10 lattice.getOption("prepanel.default.contourpl ot"),[] Underfull \vbox (badness 10000) has occurred while \output is active [2823] Underfull \hbox (badness 2913) in paragraph at lines 2813--2818 []\T1/ptm/m/n/10 Optional vec-tors of val-ues that de-fine the grid when []\T1/ pcr/m/n/10 x []\T1/ptm/m/n/10 is a ma-trix. Underfull \hbox (badness 3058) in paragraph at lines 2813--2818 []\T1/pcr/m/n/10 row.values []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 column.values []\T1/ptm/m/n/10 must have the same lengths as [2824] [2825] Underfull \hbox (badness 6758) in paragraph at lines 2941--2945 []\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether the col-orkey should be Underfull \hbox (badness 7576) in paragraph at lines 2941--2945 \T1/ptm/m/n/10 ren-dered as a raster im-age us-ing [][][]\T1/pcr/m/n/10 grid.ra ster[][][][]\T1/ptm/m/n/10 . See also Underfull \hbox (badness 10000) in paragraph at lines 2947--2949 []\T1/ptm/m/n/10 Logical flag, passed to [][][]\T1/pcr/m/n/10 rasterGrob[][][] []\T1/ptm/m/n/10 when Underfull \hbox (badness 7256) in paragraph at lines 2984--2984 []\T1/pcr/m/n/10 allow.multiple[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 outer[]\T1/p tm/m/n/10 , []\T1/pcr/m/n/10 prepanel[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 scales []\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 gr oups[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1609) in paragraph at lines 2997--3003 []\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether raster rep-re-sen-ta-ti ons should be used, Underfull \hbox (badness 2772) in paragraph at lines 2997--3003 \T1/ptm/m/n/10 both for the false color im-age and the color key (if present). Ef- Underfull \hbox (badness 1400) in paragraph at lines 2997--3003 \T1/ptm/m/n/10 fec-tively, set-ting this to []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n /10 changes the de-fault panel func-tion from Underfull \hbox (badness 2486) in paragraph at lines 3021--3025 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2826] [2827] Overfull \hbox (24.78088pt too wide) in paragraph at lines 3126--3126 [] \T1/pcr/m/n/10 xlim = if (is.factor(x)) levels(x) else range(x, finite = TRUE),[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 3127--3127 [] \T1/pcr/m/n/10 ylim = if (is.factor(y)) levels(y) else range(y, finite = TRUE),[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 3128--3128 [] \T1/pcr/m/n/10 zlim = if (is.factor(z)) levels(z) else range(z, finite = TRUE),[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 3139--3139 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default. cloud"),[] [2828] Overfull \hbox (66.78088pt too wide) in paragraph at lines 3154--3154 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defa ult.wireframe"),[] [2829] Underfull \hbox (badness 2913) in paragraph at lines 3219--3224 []\T1/ptm/m/n/10 Optional vec-tors of val-ues that de-fine the grid when []\T1/ pcr/m/n/10 x []\T1/ptm/m/n/10 is a ma-trix. Underfull \hbox (badness 3058) in paragraph at lines 3219--3224 []\T1/pcr/m/n/10 row.values []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 column.values []\T1/ptm/m/n/10 must have the same lengths as Underfull \hbox (badness 2418) in paragraph at lines 3225--3225 []\T1/pcr/m/n/10 allow.multiple[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 outer[]\T1/p tm/m/n/10 , []\T1/pcr/m/n/10 auto.key[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 prepan el[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 groups[]\T1/ptm/m/n/10 , [2830] [2831] [2832]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.parallel}) has been already used, duplicate ignored \relax l.3506 \aliasA{parallel}{B\_08\_splom}{parallel} [2833] Overfull \hbox (18.78088pt too wide) in paragraph at lines 3548--3548 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default. splom"),[] Overfull \hbox (54.78088pt too wide) in paragraph at lines 3571--3571 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defau lt.parallel"),[] Underfull \vbox (badness 10000) has occurred while \output is active [2834] [2835] [2836] [2837] [2838] Overfull \hbox (18.78088pt too wide) in paragraph at lines 3906--3906 []\T1/pcr/m/n/10 oneway(formula, data, location=mean, spread=function(x) sqrt( var(x))) [2839] [2840] Underfull \hbox (badness 2277) in paragraph at lines 3992--3996 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings by Underfull \hbox (badness 2435) in paragraph at lines 3992--3996 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2841] Overfull \hbox (120.78088pt too wide) in paragraph at lines 4089--4089 [] \T1/pcr/m/n/10 symbol = palette.colors(palette = "Okabe-Ito") [c(6, 2, 4, 7, 3, 5, 8)],[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 4091--4091 [] \T1/pcr/m/n/10 region = hcl.colors(14, palette = "YlGnBu", re v = TRUE),[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 4098--4098 [] \T1/pcr/m/n/10 reference = "gray90", bg = "transparent", fg = " black",[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 4099--4099 [] \T1/pcr/m/n/10 strip.bg = rep("gray95", 7), strip.fg = rep("gra y70", 7),[] [2842] [2843] Overfull \hbox (18.78088pt too wide) in paragraph at lines 4242--4242 []\T1/pcr/m/n/10 trellis.par.set(name, value, ..., theme, warn = TRUE, strict = FALSE) Underfull \hbox (badness 1173) in paragraph at lines 4251--4255 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in [2844] Underfull \hbox (badness 3219) in paragraph at lines 4278--4280 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when Underfull \hbox (badness 1728) in paragraph at lines 4295--4299 []\T1/pcr/m/n/10 theme[]\T1/ptm/m/n/10 ). These are used to mod-ify the cur-ren t set-tings (ob-tained by [2845] Underfull \hbox (badness 5161) in paragraph at lines 4360--4364 []\T1/ptm/m/n/10 The ac-tual list of the com-po-nents in []\T1/pcr/m/n/10 trell is.settings []\T1/ptm/m/n/10 has not been fi-nal-ized, Underfull \hbox (badness 4913) in paragraph at lines 4360--4364 \T1/ptm/m/n/10 so I'm not at-tempt-ing to list them here. The cur-rent value ca n be ob-tained by [2846] Underfull \hbox (badness 1067) in paragraph at lines 4478--4488 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. []\T1/pcr/m/n/10 col []\T1/ptm/m/n/ 10 is used for com-po-nents []\T1/pcr/m/n/10 "plot.symbol"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4478--4488 []\T1/pcr/m/n/10 "plot.line"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "plot.polygon"[ ]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "superpose.symbol"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1735) in paragraph at lines 4478--4488 []\T1/pcr/m/n/10 "superpose.line"[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 "super pose.polygon"[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 col.points Underfull \hbox (badness 10000) in paragraph at lines 4478--4488 []\T1/ptm/m/n/10 over-rides []\T1/pcr/m/n/10 col[]\T1/ptm/m/n/10 , but is used only for []\T1/pcr/m/n/10 "plot.symbol" []\T1/ptm/m/n/10 and Underfull \hbox (badness 5231) in paragraph at lines 4478--4488 []\T1/pcr/m/n/10 "superpose.symbol"[]\T1/ptm/m/n/10 . Sim-i-larly, []\T1/pcr/m/ n/10 col.line []\T1/ptm/m/n/10 over-rides []\T1/pcr/m/n/10 col []\T1/ptm/m/n/10 for [2847] Underfull \hbox (badness 1701) in paragraph at lines 4503--4506 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents []\T1/pcr/m/n/10 pl ot.symbol[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 plot.polygon[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4506--4508 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents []\T1/pcr/m/n/10 plot.polygon []\T1/ptm/m/n/10 and [2848] Underfull \hbox (badness 2932) in paragraph at lines 4649--4654 []\T1/pcr/m/n/10 auto.key[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 aspect[]\T1/ptm/m/ n/10 , []\T1/pcr/m/n/10 between[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 grid[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 skip[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/ ptm/m/n/10 , []\T1/pcr/m/n/10 xscale.components[]\T1/ptm/m/n/10 , [2849] [2850] [2851] [2852] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4925--4925 []\T1/pcr/m/n/9 p12 <- densityplot( ~ height | voice.part, data = singer, xlab = "Height")[] [2853] [2854] Underfull \hbox (badness 1558) in paragraph at lines 5048--5048 []\T1/pcr/m/n/10 main[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 page[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 par.strip.text[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 prepanel[]\ T1/ptm/m/n/10 , []\T1/pcr/m/n/10 scales[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 skip []\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1270) in paragraph at lines 5048--5048 []\T1/pcr/m/n/10 xscale.components[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 yscale.co mponents[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 axis[]\T1/ptm/m/n/10 , []\T1/pcr/m/ n/10 par.settings[]\T1/ptm/m/n/10 , Underfull \vbox (badness 1092) has occurred while \output is active [2855] Underfull \hbox (badness 10000) in paragraph at lines 5105--5108 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 trellis[]\T1/ptm/m/n/10 , by de-fault plot-ted by []\T1/pcr/m/n/10 print.trellis[]\T1/ptm/m/n/10 . [2856] [2857] Underfull \hbox (badness 1442) in paragraph at lines 5232--5235 []\T1/pcr/m/n/10 plot.shingle []\T1/ptm/m/n/10 dis-plays the ranges of shin-gle s via rect-an-gles. []\T1/pcr/m/n/10 print.shingle []\T1/ptm/m/n/10 and [2858] [2859] [2860] [2861] [2862] Underfull \hbox (badness 3646) in paragraph at lines 5571--5574 [][][]\T1/pcr/m/n/10 Lattice[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 draw. key[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 trellis.par.get[][][][]\T1/ptm /m/n/10 , and [][][]\T1/pcr/m/n/10 xyplot[][][][]\T1/ptm/m/n/10 , specif-i-call y the en-try for Overfull \hbox (36.78088pt too wide) in paragraph at lines 5601--5601 [] \T1/pcr/m/n/10 bg = trellis.par.get("strip.background")$col[wh ich.given],[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 5602--5602 [] \T1/pcr/m/n/10 fg = trellis.par.get("strip.shingle")$col[which .given],[] [2863] Underfull \hbox (badness 10000) in paragraph at lines 5684--5687 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 2103) in paragraph at lines 5684--5687 []\T1/pcr/m/n/10 horizontal=FALSE []\T1/ptm/m/n/10 is use-ful for strips on the left of pan-els us-ing [2864] Underfull \hbox (badness 1635) in paragraph at lines 5710--5715 []\T1/pcr/m/n/10 strip.default []\T1/ptm/m/n/10 is called for its side-effect, which is to draw a strip ap-pro-pri-ate for [2865] [2866] Overfull \hbox (0.78088pt too wide) in paragraph at lines 5861--5861 []\T1/pcr/m/n/10 panel.identify.qqmath(x, distribution, groups, subscripts, la bels,[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 5875--5875 []\T1/pcr/m/n/10 panel.link.splom(threshold = 18, verbose = getOption("verbose "), ...)[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 5876--5876 []\T1/pcr/m/n/10 panel.brush.splom(threshold = 18, verbose = getOption("verbos e"), ...)[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 5879--5879 []\T1/pcr/m/n/10 trellis.vpname(name = c("position", "split", "split.location" , "toplevel",[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 5882--5882 [] \T1/pcr/m/n/10 "xlab", "ylab", "xlab.top", "ylab.rig ht", "page"),[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 5884--5884 [] \T1/pcr/m/n/10 side = c("left", "top", "right", "bottom", "in side"),[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 5890--5890 [] \T1/pcr/m/n/10 which.given = lattice.getStatus("current.whi ch.given",[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 5891--5891 [] \T1/pcr/m/n/10 prefix = pre fix),[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 5892--5892 [] \T1/pcr/m/n/10 which.panel = lattice.getStatus("current.whi ch.panel",[] [2867] Overfull \hbox (0.78088pt too wide) in paragraph at lines 5893--5893 [] \T1/pcr/m/n/10 prefix = pre fix),[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 5894--5894 [] \T1/pcr/m/n/10 column = lattice.getStatus("current.focus.co lumn",[] Underfull \hbox (badness 10000) in paragraph at lines 5910--5912 []\T1/ptm/m/n/10 variables defin-ing the con-tents of the panel. In the case of Underfull \hbox (badness 2376) in paragraph at lines 5921--5923 []\T1/ptm/m/n/10 an op-tional vec-tor of la-bels as-so-ci-ated with each point. De-faults to [2868] Underfull \hbox (badness 2538) in paragraph at lines 6045--6049 \T1/ptm/m/n/10 For []\T1/pcr/m/n/10 trellis.focus[]\T1/ptm/m/n/10 , the de-faul t is []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 in in-ter-ac-tive mode, and Underfull \hbox (badness 4205) in paragraph at lines 6056--6063 []\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 panel.identify.qqmath[]\T1/ptm/m/n/10 , e x-tra pa-ram-e-ters are passed on to Underfull \hbox (badness 4792) in paragraph at lines 6056--6063 []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 trellis.switchFocus[]\T1/ptm/m/n/10 , the se are used (in com-bi-na-tion with [2869] [2870] Underfull \hbox (badness 10000) in paragraph at lines 6209--6213 [][][]\T1/pcr/m/n/10 identify[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Latt ice[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.trellis[][][][]\T1/ptm/m /n/10 , [][][]\T1/pcr/m/n/10 trellis.currentLayout[][][][]\T1/ptm/m/n/10 , [2871] Underfull \vbox (badness 10000) has occurred while \output is active [2872] [2873] Underfull \hbox (badness 4242) in paragraph at lines 6356--6361 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- [2874] [2875] Underfull \hbox (badness 3601) in paragraph at lines 6472--6477 []\T1/ptm/m/n/10 Creates Box and Whisker plot of []\T1/pcr/m/n/10 x []\T1/ptm/m /n/10 for ev-ery level of []\T1/pcr/m/n/10 y []\T1/ptm/m/n/10 (or the other way round Underfull \hbox (badness 2486) in paragraph at lines 6472--6477 \T1/ptm/m/n/10 if []\T1/pcr/m/n/10 horizontal=FALSE[]\T1/ptm/m/n/10 ). By de-fa ult, the ac-tual box-plot statis-tics are cal-cu-lated us-ing [2876] Overfull \hbox (60.78088pt too wide) in paragraph at lines 6558--6558 [] \T1/pcr/m/n/10 shade.colors.palette = trellis.par.get("shade.co lors")$palette,[] [2877] [2878] [2879] Underfull \hbox (badness 10000) in paragraph at lines 6757--6761 []\T1/ptm/m/n/10 All three num-bers should be be-tween 0 and 1. The Underfull \hbox (badness 10000) in paragraph at lines 6762--6764 []\T1/ptm/m/n/10 numeric, be-tween 0 and 1, giv-ing a min-i-mum sat-u-ra-tion i n [2880] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6858--6858 [] \T1/pcr/m/n/9 shade.colors.palette = makeShadePalette(hcl.colors(1 0, "Inferno"),[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 6861--6861 [] \T1/pcr/m/n/9 shade.colors.palette = makeShadePalette(hcl.colors(1 0, "Dark Mint"),[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 6864--6864 [] \T1/pcr/m/n/9 shade.colors.palette = makeShadePalette(hcl.colors(1 0, "Harmonic"),[] [2881] [2882] [2883] [2884] [2885] Underfull \hbox (badness 1320) in paragraph at lines 7225--7232 []\T1/pcr/m/n/10 panel.levelplot.raster []\T1/ptm/m/n/10 is an al-ter-na-tive p anel func-tion that uses the raster draw- Underfull \hbox (badness 1715) in paragraph at lines 7225--7232 \T1/ptm/m/n/10 can only ren-der data on an eq-ui-s-paced grid), but can be more ef-fi-cient. When us-ing [2886] [2887] Overfull \hbox (0.78088pt too wide) in paragraph at lines 7300--7300 [] \T1/pcr/m/n/10 varname = NULL, limits, at = NULL, labels = NULL,[] Underfull \hbox (badness 10000) in paragraph at lines 7330--7334 []\T1/ptm/m/n/10 The panel func-tion used for the di-ag-o-nals. See ar-gu-ments to Underfull \hbox (badness 1584) in paragraph at lines 7330--7334 []\T1/pcr/m/n/10 diag.panel.splom []\T1/ptm/m/n/10 to know what ar-gu-ments thi s func-tion is passed [2888] [2889] Underfull \hbox (badness 10000) in paragraph at lines 7435--7438 \T1/ptm/m/n/10 and []\T1/pcr/m/n/10 diag.panel []\T1/ptm/m/n/10 from []\T1/pcr/ m/n/10 panel.pairs[]\T1/ptm/m/n/10 . Cur-rently ig-nored by Overfull \hbox (101.58032pt too wide) in paragraph at lines 7460--7460 [] \T1/pcr/m/n/9 function(i,j) hcl.colors(11)[i+j-1]) ## rainbow( 11, start=.12, end=.5)[i+j-1])[] [2890] [2891] Underfull \hbox (badness 2012) in paragraph at lines 7601--7604 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2892] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7647--7647 [] \T1/pcr/m/n/9 panel.qqmath(..., f.value = ppoints(100), ta ils.n = 50))[] [2893] [2894] Underfull \hbox (badness 1939) in paragraph at lines 7836--7844 []\T1/pcr/m/n/10 "lm" []\T1/ptm/m/n/10 adds a lin-ear re-gres-sion line (same a s [][][]\T1/pcr/m/n/10 panel.lmline[][][][]\T1/ptm/m/n/10 , ex-cept Underfull \hbox (badness 1163) in paragraph at lines 7836--7844 \T1/ptm/m/n/10 for de-fault graph-i-cal pa-ram-e-ters). []\T1/pcr/m/n/10 "loess " []\T1/ptm/m/n/10 adds a loess fit (same as [2895] Underfull \hbox (badness 2772) in paragraph at lines 7859--7862 []\T1/ptm/m/n/10 Most gen-er-ally, []\T1/pcr/m/n/10 grid []\T1/ptm/m/n/10 can b e a list of ar-gu-ments to be sup-plied to [2896] Overfull \hbox (25.98041pt too wide) in paragraph at lines 7930--7930 [] \T1/pcr/m/n/9 ylab = list(c("horizontal=TRUE", "horizontal=FALSE"), y = c(1/6, 4/6)),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 7940--7940 [] \T1/pcr/m/n/9 scales = list(alternating = c(0, 2), tck = c(0, 0.7), d raw = FALSE),[] [2897] Overfull \hbox (12.78088pt too wide) in paragraph at lines 8025--8025 [] \T1/pcr/m/n/10 font, fontfamily, fontface, cex, ..., identifier, nam e.type)[] Overfull \hbox (84.78088pt too wide) in paragraph at lines 8044--8044 [] \T1/pcr/m/n/10 adj = c(0.5, 0.5), pos = NULL, offset = 0.5, ..., ide ntifier, name.type)[] Underfull \vbox (badness 10000) has occurred while \output is active [2898] Underfull \hbox (badness 6428) in paragraph at lines 8092--8092 []\T1/pcr/m/n/10 col[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 alpha[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lty[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lwd[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 fill[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pch[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 cex[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lineheight[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 font[]\T1/ptm/m/n/10 , [2899] Overfull \hbox (63.78036pt too wide) in paragraph at lines 8180--8180 []\T1/pcr/m/n/9 xyplot(y ~ x, d, panel = panel.rect, col = 4, alpha = 0.5, wid th = 0.1, height = 0.1)[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 8187--8187 []\T1/pcr/m/n/9 xyplot(y ~ x, d, panel = panel.polygon, col = 4, alpha = 0.5, rule = "evenodd")[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 8189--8189 []\T1/pcr/m/n/9 ## Example adapted from https://journal.r-project.org/articles /RJ-2012-017/[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 8193--8193 []\T1/pcr/m/n/9 xyplot(y ~ x, data = d, panel = panel.polygon, rule = "none", col = "grey")[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 8194--8194 []\T1/pcr/m/n/9 xyplot(y ~ x, data = d, panel = panel.polypath, rule = "windin g", col = "grey")[] [2900] Overfull \hbox (31.3804pt too wide) in paragraph at lines 8195--8195 []\T1/pcr/m/n/9 xyplot(y ~ x, data = d, panel = panel.polypath, rule = "evenod d", col = "grey")[] Overfull \hbox (66.78088pt too wide) in paragraph at lines 8254--8254 []\T1/pcr/m/n/10 panel.grid(h=3, v=3, col, col.line, lty, lwd, x, y, ..., iden tifier = "grid")[] [2901] Underfull \hbox (badness 1436) in paragraph at lines 8309--8315 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for [2902] [2903] Overfull \hbox (42.18039pt too wide) in paragraph at lines 8439--8439 [] \T1/pcr/m/n/9 panel.superpose(x, y, ..., panel.groups = panel.ave rage, grid = FALSE,[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 8453--8453 [] \T1/pcr/m/n/9 args = list(mean = mean(x), sd = sd(x)), ...)[] [2904] [2905] [2906] [2907] [2908] [2909] Underfull \hbox (badness 10000) in paragraph at lines 8878--8881 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to []\T1/pcr/m/n/10 panel.super pose Underfull \hbox (badness 10000) in paragraph at lines 8878--8881 []\T1/ptm/m/n/10 from []\T1/pcr/m/n/10 panel.superpose.2[]\T1/ptm/m/n/10 , and to []\T1/pcr/m/n/10 panel.groups []\T1/ptm/m/n/10 from [2910] [2911] Overfull \hbox (24.78088pt too wide) in paragraph at lines 9053--9053 []\T1/pcr/m/n/10 prepanel.default.bwplot(x, y, horizontal, nlevels, origin, st ack, ...)[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 9054--9054 []\T1/pcr/m/n/10 prepanel.default.histogram(x, breaks, equal.widths, type, nin t, ...)[] [2912] Overfull \hbox (30.78088pt too wide) in paragraph at lines 9066--9066 []\T1/pcr/m/n/10 prepanel.default.densityplot(x, darg, groups, weights, subscr ipts, ...)[] Underfull \hbox (badness 3118) in paragraph at lines 9085--9088 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. []\T1/pcr/m/n/10 type [ ]\T1/ptm/m/n/10 has a dif-fer-ent mean-ing in [2913] Underfull \hbox (badness 1515) in paragraph at lines 9160--9164 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2914] [2915] Underfull \hbox (badness 6316) in paragraph at lines 9266--9271 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in [2916] Overfull \hbox (47.58038pt too wide) in paragraph at lines 9376--9376 [] \T1/pcr/m/n/9 ans$bottom$labels$labels <- parse(text = ans$b ottom$labels$labels)[] [2917] [2918] Overfull \hbox (9.78043pt too wide) in paragraph at lines 9515--9515 []\T1/pcr/m/n/9 xyplot(sunspot.year ~ time(sunspot.year) | equal.count(time(su nspot.year)),[] [2919] Underfull \hbox (badness 1028) in paragraph at lines 9574--9578 \T1/pcr/m/n/10 condition []\T1/ptm/m/n/10 for 2-D, and []\T1/pcr/m/n/10 left, r ight.x, right.y, left.name, right.x.name, [2920] [2921] [2922] [2923] [2924] [2925] [2926] Underfull \hbox (badness 7238) in paragraph at lines 10018--10022 []\T1/ptm/m/n/10 Factor with lev-els []\T1/pcr/m/n/10 "Svansota"[]\T1/ptm/m/n/1 0 , []\T1/pcr/m/n/10 "No. 462"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Manchuria"[] \T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "No. 475"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 10018--10022 []\T1/pcr/m/n/10 "Velvet"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Peatland"[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 "Glabron"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "No. 4 57"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Wisconsin No. 38"[]\T1/ptm/m/n/10 , [2927] [2928] [2929]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been already used, duplicate ignored \relax l.10249 \aliasA{melanoma}{H\_melanoma}{melanoma} [2930] [2931] [2932] Underfull \hbox (badness 10000) in paragraph at lines 10411--10416 \T1/pcr/m/n/10 diseases[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Diabetes[]\T1/ptm/m/ n/10 , []\T1/pcr/m/n/10 Flu and pneumonia[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 He art disease[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Lower Overfull \hbox (9.78043pt too wide) in paragraph at lines 10484--10484 [] \T1/pcr/m/n/9 par.settings = simpleTheme(pch = 16), auto.key = list( columns = 2),[] [2933] [2934]) (./mgcv-pkg.tex Chapter 24. [2935] [2936] Overfull \hbox (6.78088pt too wide) in paragraph at lines 160--160 []\T1/pcr/m/n/10 bam(formula,family=gaussian(),data=list(),weights=NULL,subset =NULL, Overfull \hbox (18.78088pt too wide) in paragraph at lines 163--163 [] \T1/pcr/m/n/10 paraPen=NULL,chunk.size=10000,rho=0,AR.start=NULL,discret e=FALSE,[] [2937] Overfull \hbox (48.78088pt too wide) in paragraph at lines 165--165 [] \T1/pcr/m/n/10 coef=NULL,drop.unused.levels=TRUE,G=NULL,fit=TRUE,drop.in tercept=NULL,[] Underfull \hbox (badness 1142) in paragraph at lines 185--189 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 210--215 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2938] [2939] [2940] [2941] Underfull \hbox (badness 10000) in paragraph at lines 382--389 [][][]\T1/pcr/m/n/10 mgcv.parallel[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gamObject[][][][]\T1 /ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/ptm/m/n/10 , [][][]\T1 /pcr/m/n/10 smooth.terms[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 382--389 [][][]\T1/pcr/m/n/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1/ pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][] [][]predict. gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 382--389 [][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 g am.side[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.selection[][][][]\T1/p tm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.control[][][] [][]gam.check[][][][]\T1/ptm /m/n/10 , [2942] Overfull \hbox (4.38043pt too wide) in paragraph at lines 425--425 []\T1/pcr/m/n/9 system.time(b2 <- bam(y ~ s(x0,bs=bs,k=k)+s(x1,bs=bs,k=k)+s(x2 ,bs=bs,k=k)+[] [2943] [2944] [2945] Underfull \hbox (badness 2922) in paragraph at lines 637--638 []\T1/ptm/m/n/10 The link func-tion: one of []\T1/pcr/m/n/10 "logit"[]\T1/ptm/m /n/10 , []\T1/pcr/m/n/10 "probit"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cloglog" []\T1/ptm/m/n/10 and [2946] [2947] Underfull \hbox (badness 1406) in paragraph at lines 707--708 []\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t ing en-vi-ron-ment vari-able [2948] [2949] Underfull \hbox (badness 1158) in paragraph at lines 817--819 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion [2950] Underfull \hbox (badness 1259) in paragraph at lines 880--881 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2951] Underfull \vbox (badness 10000) has occurred while \output is active [2952] [2953] [2954] [2955] [2956] [2957] [2958] [2959] [2960] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1423--1423 []\T1/pcr/m/n/9 lines(b$family$data$tr,exp(-b$family$data$h + 2*b$family$data$ q^.5),col=2)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1424--1424 []\T1/pcr/m/n/9 lines(b$family$data$tr,exp(-b$family$data$h - 2*b$family$data$ q^.5),col=2)[] [2961] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1441--1441 [] \T1/pcr/m/n/9 plot(b$y[oy],rs[oy,ii[1]],ylim=c(-3,3),type="l",ylab="scor e residuals",[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1453--1453 []\T1/pcr/m/n/9 bs <- gam(cbind(time,strata)~s(age,by=sex)+sex+s(nodes)+perfor +rx+obstruct[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1462--1462 []\T1/pcr/m/n/9 if (i==1) plot(bs$family$data$tr[ind],exp(-bs$family$data$h[in d]),type="l",[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1464--1464 [] \T1/pcr/m/n/9 lines(bs$family$data$tr[ind],exp(-bs$family$data$h[ind]) ,lwd=2,col=i)[] Underfull \vbox (badness 10000) has occurred while \output is active [2962] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1495--1495 []\T1/pcr/m/n/9 b <- gam(t~s(x0)+s(x1)+s(x2,k=15)+s(x3),family=cox.ph,weights= d,data=surv)[] [2963] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1578--1578 [] \T1/pcr/m/n/9 if (inter) prg <- txtProgressBar(min = 0, max = length(sid), initial = 0,[] [2964] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1589--1589 [] \T1/pcr/m/n/9 if (um[[et]][1]==max(tr)&&um[[status]][1]==1) um[[event]][ nrow(um)] <- 1[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1628--1628 []\T1/pcr/m/n/9 pd <- data.frame(lapply(X=di,FUN=app,t=di$day,to=te)) ## inter polate to te[] [2965] [2966] [2967] [2968] [2969] [2970] [2971] [2972] [2973] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2116--2116 []\T1/pcr/m/n/9 bd <- bam(y~s(x0)+ s(x1) + s(x1,fac,bs="sz",k=5)+s(x2,k=20),di screte=TRUE)[] [2974] [2975] [2976] [2977] Overfull \hbox (30.78088pt too wide) in paragraph at lines 2352--2352 []\T1/pcr/m/n/10 fixDependence(X1,X2,tol=.Machine$double.eps^.5,rank.def=0,str ict=FALSE) [2978] [2979] Underfull \vbox (badness 2302) has occurred while \output is active [2980] [2981] [2982] [2983] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2757--2757 []\T1/pcr/m/n/10 gam(formula,family=gaussian(),data=list(),weights=NULL,subset =NULL,[] Underfull \hbox (badness 1728) in paragraph at lines 2769--2772 []\T1/ptm/m/n/10 A GAM for-mula, or a list of for-mu-lae (see [][][]\T1/pcr/m/n /10 formula.gam[][][] []\T1/ptm/m/n/10 and also [2984] Underfull \hbox (badness 1142) in paragraph at lines 2782--2786 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 2808--2814 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2985] [2986] Underfull \hbox (badness 1389) in paragraph at lines 2885--2886 []\T1/ptm/m/n/10 A list spec-i-fy-ing the neigh-bour-hood struc-ture for [][][] \T1/pcr/m/n/10 NCV[][][][]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 a []\T1/ptm/m/n/10 is the vec-tor Underfull \hbox (badness 2495) in paragraph at lines 2885--2886 []\T1/ptm/m/n/10 gives the points dropped for the neigh-bour-hood []\T1/pcr/m/n /10 j[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 d []\T1/ptm/m/n/10 is the vec-tor Underfull \hbox (badness 1558) in paragraph at lines 2885--2886 \T1/ptm/m/n/10 of in-dices of points to pre-dict, with cor-re-spond-ing end-poi nts []\T1/pcr/m/n/10 md[]\T1/ptm/m/n/10 . So [2987] Underfull \hbox (badness 1043) in paragraph at lines 2973--2979 \T1/ptm/m/n/10 eral lin-ear func-tion-als of smooths, via the sum-ma-tion con-v en-tion mech-a-nism de-scribed in [2988] [2989] Underfull \hbox (badness 10000) in paragraph at lines 3111--3117 [][][]\T1/pcr/m/n/10 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gamObject[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/pt m/m/n/10 , [][][]\T1/pcr/m/n/10 smooth.terms[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3111--3117 [][][]\T1/pcr/m/n/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1/ pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][] [][]predict. gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3111--3117 [][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 g am.side[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.selection[][][][]\T1/p tm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.control[][][] [][]gam.check[][][][]\T1/ptm /m/n/10 , [2990] Underfull \vbox (badness 10000) has occurred while \output is active [2991] Underfull \vbox (badness 10000) has occurred while \output is active [2992] Underfull \vbox (badness 10000) has occurred while \output is active [2993] [2994] [2995] Overfull \hbox (0.78088pt too wide) in paragraph at lines 3428--3428 []\T1/pcr/m/n/10 gam.control(nthreads=1,ncv.threads=1,irls.reg=0.0,epsilon = 1 e-07, Overfull \hbox (0.78088pt too wide) in paragraph at lines 3429--3429 [] \T1/pcr/m/n/10 maxit = 200,mgcv.tol=1e-7,mgcv.half=15, trace = F ALSE,[] [2996] [2997] [2998] [2999] [3000] Overfull \hbox (6.78088pt too wide) in paragraph at lines 3767--3767 [] \T1/pcr/m/n/10 mustart = NULL, offset = rep(0, nobs), U1 = diag(nco l(x)),[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 3770--3770 [] \T1/pcr/m/n/10 printWarn=TRUE,scoreType="REML",null.coef=rep(0,ncol (x)),[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 3771--3771 [] \T1/pcr/m/n/10 pearson.extra=0,dev.extra=0,n.true=-1,Sl=NULL,nei=NU LL,...)[] [3001] [3002] [3003] [3004] [3005] [3006] [3007] [3008] Underfull \hbox (badness 5189) in paragraph at lines 4249--4253 []\T1/ptm/m/n/10 Random ef-fects can be added to []\T1/pcr/m/n/10 gam []\T1/ptm /m/n/10 mod-els us-ing []\T1/pcr/m/n/10 s(...,bs="re") []\T1/ptm/m/n/10 terms ( see [3009] [3010] Overfull \hbox (9.78043pt too wide) in paragraph at lines 4366--4366 []\T1/pcr/m/n/9 rm1 <- gam(y ~ s(fac,bs="re")+s(x0)+s(x1)+s(x2)+s(x3),data=dat ,method="ML")[] Underfull \vbox (badness 10000) has occurred while \output is active [3011] [3012] [3013] Underfull \hbox (badness 1184) in paragraph at lines 4536--4540 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [3014] [3015] [3016] [3017] [3018] [3019] [3020] Overfull \hbox (25.98041pt too wide) in paragraph at lines 4982--4982 [] \T1/pcr/m/n/9 mod <- gam(y~s(a,bs="re")+s(b,bs="re")+s(a,b,bs="re")+s(x0,i d=1)+s(x1,id=1)+[] [3021] [3022] [3023] Overfull \hbox (18.78088pt too wide) in paragraph at lines 5132--5132 []\T1/pcr/m/n/10 gamlss.gH(X, jj, l1, l2, i2, l3 = 0, i3 = 0, l4 = 0, i4 = 0, d1b = 0, [3024] [3025] Underfull \hbox (badness 1142) in paragraph at lines 5259--5263 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [3026] Underfull \hbox (badness 10000) in paragraph at lines 5331--5340 []\T1/ptm/m/n/10 In the event of []\T1/pcr/m/n/10 lme []\T1/ptm/m/n/10 con-ver- gence fail-ures, con-sider mod-i-fy-ing [3027] [3028] Underfull \hbox (badness 5970) in paragraph at lines 5448--5454 [][][]\T1/pcr/m/n/10 magic[][][] []\T1/ptm/m/n/10 for an al-ter-na-tive for cor -re-lated data, [][][]\T1/pcr/m/n/10 te[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m /n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.gam[][][][]\T1/ptm /m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 1418) in paragraph at lines 5448--5454 [][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 n egbin[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 vis.gam[][][][]\T1/ptm/m/n/1 0 ,[][][]\T1/pcr/m/n/10 pdTens[][][][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 gamm4 [ ]\T1/ptm/m/n/10 ( [][]$\T1/pcr/m/n/10 https : / / cran . r-[]project . [3029] Underfull \vbox (badness 10000) has occurred while \output is active [3030] [3031] [3032] [3033] Underfull \hbox (badness 1577) in paragraph at lines 5797--5800 []\T1/ptm/m/n/10 If `outer' it-er-a-tion has been used to fit the model (see [] [][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 ar-gu-ment Underfull \hbox (badness 2181) in paragraph at lines 5804--5805 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [3034] [3035] [3036] [3037] [3038] [3039] [3040] [3041] [3042] Overfull \hbox (6.78088pt too wide) in paragraph at lines 6307--6307 []\T1/pcr/m/n/10 ginla(G,A=NULL,nk=16,nb=100,J=1,interactive=FALSE,integ=0,app rox=0) Underfull \hbox (badness 6708) in paragraph at lines 6313--6314 []\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by []\T1/pcr/m/n/10 gam(.. .,fit=FALSE) []\T1/ptm/m/n/10 or [3043] [3044] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6362--6362 [] \T1/pcr/m/n/9 ## example using a scale location model for the motorcycle d ata. A simple[] [3045] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6387--6387 [] \T1/pcr/m/n/9 } else lines(xg,predict(din,xg)$y,col=lcol[j],lwd=lwd[j] ,lty=lty[j])[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6416--6416 [] \T1/pcr/m/n/9 fv <- predict(b,se=TRUE) ## usual Gaussian approximation, fo r comparison[] [3046] [3047] [3048] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6538--6538 [] \T1/pcr/m/n/9 (1+exp(-10*(x[201:300]-.5)))-0.9933071) + z*(1-z)*5 + r norm(100)*.4[] [3049] [3050] [3051] [3052] [3053] Overfull \hbox (24.78088pt too wide) in paragraph at lines 6875--6875 []\T1/pcr/m/n/10 jagam(formula,family=gaussian,data=list(),file,weights=NULL,n a.action, Overfull \hbox (36.78088pt too wide) in paragraph at lines 6877--6877 []\T1/pcr/m/n/10 control=gam.control(),centred=TRUE,sp.prior = "gamma",diagona lize=FALSE)[] Underfull \hbox (badness 1142) in paragraph at lines 6898--6902 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [3054] [3055] [3056] [3057] [3058] [3059] [3060] Overfull \hbox (72.78088pt too wide) in paragraph at lines 7221--7221 []\T1/pcr/m/n/10 ldTweedie(y,mu=y,p=1.5,phi=1,rho=NA,theta=NA,a=1.001,b=1.999, all.derivs=FALSE) [3061] [3062] [3063] Underfull \vbox (badness 10000) has occurred while \output is active [3064] Underfull \vbox (badness 10000) has occurred while \output is active [3065] [3066] [3067] Overfull \hbox (66.78088pt too wide) in paragraph at lines 7630--7630 []\T1/pcr/m/n/10 lp(c,A,b,C=NULL,d=NULL,Bi=NULL,maxit=max(1000, nrow(A) * 10), phase1 = FALSE) [3068] [3069] Overfull \hbox (52.98038pt too wide) in paragraph at lines 7752--7752 []\T1/pcr/m/n/9 "The world is ruled by idiots because only an idiot would want to rule the world.",[] [3070] Overfull \hbox (36.78088pt too wide) in paragraph at lines 7779--7779 [] \T1/pcr/m/n/10 .Machine$double.eps^0.5),extra.rss=0,n.score=length(y), nthreads=1)[] [3071] [3072] [3073] [3074] [3075] [3076] [3077] Underfull \vbox (badness 1163) has occurred while \output is active [3078] [3079] [3080] Underfull \hbox (badness 1242) in paragraph at lines 8388--8389 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [3081] [3082] Overfull \hbox (20.58041pt too wide) in paragraph at lines 8475--8475 []\T1/pcr/m/n/9 ## Alternative, better scaling example, using the discrete opt ion with bam...[] [3083] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8538--8538 []\T1/pcr/m/n/9 for (sim in c(1,7)) { ## cycle over uncorrelated and correlate d covariates[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8557--8557 [] \T1/pcr/m/n/9 dat1[[dname[i]]][dat1[[by.name]]] <- mean(dat1[[dname[i]]] ,na.rm=TRUE)[] [3084] [3085] [3086] [3087] [3088] [3089] [3090] [3091] [3092] [3093] [3094] [3095] [3096] [3097] [3098] [3099] [3100] [3101] [3102] [3103] [3104] Underfull \vbox (badness 10000) has occurred while \output is active [3105] [3106] Underfull \hbox (badness 10000) in paragraph at lines 9877--9880 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: []\T1/pcr/m/n/10 Dim .pdIndot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 coef.pdIdnot[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9877--9880 []\T1/pcr/m/n/10 corMatrix.pdIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 logDet.pd Idnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdConstruct.pdIdnot[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3118) in paragraph at lines 9877--9880 []\T1/pcr/m/n/10 pdFactor.pdIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdMatrix.p dIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 solve.pdIdnot[]\T1/ptm/m/n/10 , []\T1 /pcr/m/n/10 summary.pdIdnot[]\T1/ptm/m/n/10 . [3107] Underfull \hbox (badness 10000) in paragraph at lines 9933--9936 []\T1/ptm/m/n/10 These func-tions ([]\T1/pcr/m/n/10 pdTens[]\T1/ptm/m/n/10 , [] \T1/pcr/m/n/10 pdConstruct.pdTens[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdFactor.p dTens[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3108) in paragraph at lines 9933--9936 []\T1/pcr/m/n/10 pdMatrix.pdTens[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 coef.pdTens []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 summary.pdTens[]\T1/ptm/m/n/10 ) would n ot nor-mally be [3108] [3109] [3110] Overfull \hbox (18.78088pt too wide) in paragraph at lines 10153--10153 []\T1/pcr/m/n/10 plot(x,residuals=FALSE,rug=NULL,se=TRUE,pages=0,select=NULL,s cale=-1,[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 10157--10157 [] \T1/pcr/m/n/10 trans=I,seWithMean=FALSE,unconditional=FALSE,by.resi ds=FALSE,[] [3111] [3112] [3113] Underfull \hbox (badness 1629) in paragraph at lines 10313--10318 []\T1/ptm/m/n/10 just won't let you do it. In this case, the quick-est op-tion is some-times to clone the [3114] [3115] [3116] [3117] Overfull \hbox (84.78088pt too wide) in paragraph at lines 10525--10525 [] \T1/pcr/m/n/10 na.action=na.pass,cluster=NULL,discrete=TRUE,n.thread s=1,gc.level=0,...)[] Underfull \hbox (badness 1062) in paragraph at lines 10562--10566 []\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 type=="terms" []\T1/ptm/m/n/10 or []\T1/pc r/m/n/10 type="iterms" []\T1/ptm/m/n/10 then terms (smooth or para- [3118] [3119] Overfull \hbox (6.78088pt too wide) in paragraph at lines 10695--10695 [] \T1/pcr/m/n/10 na.action=na.pass,unconditional=FALSE,iterms.type=NUL L,...)[] [3120] [3121] [3122] Overfull \hbox (20.58041pt too wide) in paragraph at lines 10856--10856 []\T1/pcr/m/n/9 x1 <- seq(.2,.8,length=m1);x2 <- seq(.2,.8,length=m2) ## margi nal grid points[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 10857--10857 []\T1/pcr/m/n/9 df <- data.frame(x0=rep(.5,n),x1=rep(x1,m2),x2=rep(x2,each=m1) ,x3=rep(0,n))[] [3123] Underfull \vbox (badness 10000) has occurred while \output is active [3124] Underfull \vbox (badness 10000) has occurred while \output is active [3125] Overfull \hbox (9.78043pt too wide) in paragraph at lines 10996--10996 [] \T1/pcr/m/n/9 Xi[,(i-1)*9+1:9+1] <- Xp[,(i-1)*9+1:9+1] ## Xi%*%coef(b) = s mooth deriv i[] Underfull \hbox (badness 1205) in paragraph at lines 11034--11035 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 11034--11035 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 11040--11045 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [3126] [3127] Underfull \hbox (badness 1205) in paragraph at lines 11124--11125 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 11124--11125 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [3128] Underfull \hbox (badness 10000) in paragraph at lines 11193--11196 []\T1/ptm/m/n/10 The smooth ob-ject will be largely what is re-turned from Underfull \hbox (badness 2057) in paragraph at lines 11193--11196 [][][]\T1/pcr/m/n/10 smooth.construct.so.smooth.spec[][][][]\T1/ptm/m/n/10 , al -though el-e-ments []\T1/pcr/m/n/10 X []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 S [ ]\T1/ptm/m/n/10 are not needed, [3129] [3130] Underfull \hbox (badness 1253) in paragraph at lines 11323--11325 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [3131] [3132] [3133] [3134] [3135] Underfull \hbox (badness 1946) in paragraph at lines 11576--11583 []\T1/ptm/m/n/10 The sec-ond method rep-re-sents the con-ven-tional ran-dom ef- fects in a GAM in the same Underfull \hbox (badness 2221) in paragraph at lines 11576--11583 \T1/ptm/m/n/10 way that the smooths are rep-re-sented --- as pe-nal-ized re-gre s-sion terms. This method Underfull \hbox (badness 2042) in paragraph at lines 11576--11583 \T1/ptm/m/n/10 can be used with [][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 by mak-ing use of []\T1/pcr/m/n/10 s(...,bs="re") []\T1/ptm/m/n/10 terms in a model: see Underfull \hbox (badness 2846) in paragraph at lines 11584--11587 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the []\T1/pcr/m/n /10 paraPen []\T1/ptm/m/n/10 ar-gu-ment to [][][]\T1/pcr/m/n/10 gam[][][] []\T1 /ptm/m/n/10 can be used: Underfull \hbox (badness 5862) in paragraph at lines 11584--11587 \T1/ptm/m/n/10 see [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/ptm/m/n/10 . If s mooth-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [3136] Overfull \hbox (9.78043pt too wide) in paragraph at lines 11650--11650 []\T1/pcr/m/n/9 rm1 <- gam(y ~ s(fac,bs="re")+s(x0)+s(x1)+s(x2)+s(x3),data=dat ,method="ML")[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 11660--11660 []\T1/pcr/m/n/9 ## The effect of the new factor levels (or any interaction inv olving them)[] [3137] Underfull \hbox (badness 10000) in paragraph at lines 11691--11694 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of []\T1/pcr/m/n/ 10 "deviance"[]\T1/ptm/m/n/10 , [3138] [3139] [3140] [3141] [3142] Overfull \hbox (36.78088pt too wide) in paragraph at lines 11993--11993 []\T1/pcr/m/n/10 s(..., k=-1,fx=FALSE,bs="tp",m=NA,by=NA,xt=NULL,id=NULL,sp=NU LL,pc=NULL) [3143] [3144] [3145] [3146] [3147] [3148] Overfull \hbox (9.78043pt too wide) in paragraph at lines 12366--12366 [] \T1/pcr/m/n/9 true <- mu + (del * sigma) * sinh((1/del) * asinh(qnorm(qq)) + (eps/del))[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 12380--12380 []\T1/pcr/m/n/9 b <- gam(list(accel~s(times, k=20, bs = "ad"), ~s(times, k = 1 0), ~1, ~1),[] Underfull \vbox (badness 10000) has occurred while \output is active [3149] [3150] Underfull \hbox (badness 3861) in paragraph at lines 12482--12485 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if Overfull \hbox (36.78088pt too wide) in paragraph at lines 12491--12491 []\T1/pcr/m/n/10 Sl.initial.repara(Sl, X, inverse = FALSE, both.sides = TRUE, cov = TRUE,[] [3151] Underfull \hbox (badness 10000) in paragraph at lines 12508--12512 []\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 inverse==TRUE []\T1/ptm/m/n/10 and []\T1/p cr/m/n/10 both.sides==FALSE []\T1/ptm/m/n/10 then the re- Underfull \hbox (badness 10000) in paragraph at lines 12548--12552 []\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 inverse==TRUE []\T1/ptm/m/n/10 and []\T1/p cr/m/n/10 both.sides==FALSE []\T1/ptm/m/n/10 then the re- [3152] Overfull \hbox (6.78088pt too wide) in paragraph at lines 12571--12571 []\T1/pcr/m/n/10 Sl.setup(G,cholesky=FALSE,no.repara=FALSE,sparse=FALSE,keepS= FALSE) [3153] [3154] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12695--12695 [] \T1/pcr/m/n/9 range(er$values-um$values[ind]);range(abs(er$vectors)-abs(um$ vectors[,ind]))[] Underfull \hbox (badness 1975) in paragraph at lines 12706--12711 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [3155] Underfull \hbox (badness 1803) in paragraph at lines 12783--12787 \T1/ptm/m/n/10 The last en-try will be the []\T1/pcr/m/n/10 by []\T1/ptm/m/n/10 vari-able, if []\T1/pcr/m/n/10 object$by []\T1/ptm/m/n/10 is not []\T1/pcr/m/n /10 "NA"[]\T1/ptm/m/n/10 . Underfull \hbox (badness 1502) in paragraph at lines 12795--12807 []\T1/pcr/m/n/10 cs.smooth.spec []\T1/ptm/m/n/10 (cu-bic re-gres-sion splines w ith shrinkage-to-zero); []\T1/pcr/m/n/10 cc.smooth.spec [3156] Underfull \hbox (badness 2401) in paragraph at lines 12812--12816 []\T1/ptm/m/n/10 method is used if there is no more spe-cific method avail-able . Plot meth-ods can be Underfull \hbox (badness 2970) in paragraph at lines 12812--12816 \T1/ptm/m/n/10 added for spe-cific smooth classes, see source code for []\T1/pc r/m/n/10 mgcv:::plot.sos.smooth[]\T1/ptm/m/n/10 , [3157] [3158] [3159] Underfull \hbox (badness 6876) in paragraph at lines 13007--13013 [][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use adap-tive smooths of on e or two vari-ables, spec-i-fied via terms like [3160] Underfull \hbox (badness 10000) in paragraph at lines 13048--13049 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3161] [3162] Underfull \hbox (badness 10000) in paragraph at lines 13166--13167 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3163] Overfull \hbox (4.38043pt too wide) in paragraph at lines 13220--13220 [] \T1/pcr/m/n/9 b <- gam(y~s(x0,bs=bs,m=c(4,2))+s(x1,bs=bs)+s(x2,k=15,bs=bs, m=c(4,3,0))+[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 13232--13232 [] \T1/pcr/m/n/9 ## now a model with first order penalty evaluated over (-.5, 1.5) (black)[] [3164] Overfull \hbox (9.78043pt too wide) in paragraph at lines 13244--13244 [] \T1/pcr/m/n/9 ## penalty defined on (-.5,1.5) gives plausible predictions and intervals[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 13249--13249 [] \T1/pcr/m/n/9 ## penalty defined on whole real line gives constant width i ntervals away[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 13255--13255 [] \T1/pcr/m/n/9 ## penalty defined only over the data interval (0,1) gives w ild and wide[] Overfull \hbox (3.70428pt too wide) in paragraph at lines 13256--13256 [] \T1/pcr/m/n/9 ## extrapolation since penalty has been \TS1/cmtt/m/n/9 `\T1 /pcr/m/n/9 turned off\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 outside data range:[] [3165] Underfull \hbox (badness 10000) in paragraph at lines 13325--13327 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a Underfull \hbox (badness 10000) in paragraph at lines 13325--13327 \T1/ptm/m/n/10 term []\T1/pcr/m/n/10 s(...,bs="cr",...)[]\T1/ptm/m/n/10 , []\T1 /pcr/m/n/10 s(...,bs="cs",...) []\T1/ptm/m/n/10 or [3166] [3167] Underfull \hbox (badness 10000) in paragraph at lines 13455--13456 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3168] [3169] Overfull \hbox (9.78043pt too wide) in paragraph at lines 13536--13536 []\T1/pcr/m/n/9 b <- gam(y~s(x,z,bs="ds",m=c(1,.5),k=50),data=data) ## first deriv penalty[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 13537--13537 []\T1/pcr/m/n/9 b1 <- gam(y~s(x,z,bs="ds",m=c(2,.5),k=50),data=data) ## modifi ed 2nd deriv[] [3170] [3171] Underfull \hbox (badness 10000) in paragraph at lines 13690--13691 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3172] [3173] [3174] [3175] [3176] Overfull \hbox (9.78043pt too wide) in paragraph at lines 13940--13940 []\T1/pcr/m/n/9 b <- gam(crime ~ s(district,bs="mrf",k=20,xt=xt),data=columb,m ethod="REML")[] [3177] Underfull \hbox (badness 10000) in paragraph at lines 14001--14003 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3178] [3179] Underfull \hbox (badness 10000) in paragraph at lines 14160--14163 []\T1/ptm/m/n/10 For the []\T1/pcr/m/n/10 smooth.construct []\T1/ptm/m/n/10 met hod a smooth spec-i-fi-ca-tion ob- Underfull \hbox (badness 3312) in paragraph at lines 14160--14163 \T1/ptm/m/n/10 ject, usu-ally gen-er-ated by a term []\T1/pcr/m/n/10 s(x,...,bs ="re",)[]\T1/ptm/m/n/10 . For the Underfull \hbox (badness 7099) in paragraph at lines 14160--14163 []\T1/pcr/m/n/10 predict.Matrix []\T1/ptm/m/n/10 method an ob-ject of class []\ T1/pcr/m/n/10 "random.effect" [3180] [3181] Overfull \hbox (4.38043pt too wide) in paragraph at lines 14246--14246 []\T1/pcr/m/n/9 b <- c(rnorm(nb/2)*2,rnorm(nb/2)*.5) ## random effect now with 2 variances[] [3182] Underfull \hbox (badness 10000) in paragraph at lines 14291--14297 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a Underfull \hbox (badness 7832) in paragraph at lines 14291--14297 []\T1/pcr/m/n/10 s(...,bs="so",xt=list(bnd=bnd,...)) []\T1/ptm/m/n/10 term in a []\T1/pcr/m/n/10 gam []\T1/ptm/m/n/10 for- [3183] [3184] [3185] Overfull \hbox (36.7804pt too wide) in paragraph at lines 14506--14506 []\T1/pcr/m/n/9 ## notice NULL element in \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 xt\TS1 /pcr/m/n/9 ' \T1/pcr/m/n/9 list - to indicate no xt object for "cr" basis...[] Underfull \vbox (badness 10000) has occurred while \output is active [3186] Underfull \vbox (badness 10000) has occurred while \output is active [3187] Underfull \hbox (badness 10000) in paragraph at lines 14609--14617 [][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths on th e sphere, via terms like Underfull \hbox (badness 10000) in paragraph at lines 14635--14636 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3188] [3189] [3190] Underfull \hbox (badness 7613) in paragraph at lines 14780--14783 []\T1/ptm/m/n/10 method an ob-ject of class []\T1/pcr/m/n/10 "sz.interaction" [ ]\T1/ptm/m/n/10 pro-duced by the [3191] Underfull \hbox (badness 1546) in paragraph at lines 14801--14802 []\T1/ptm/m/n/10 The terms can have a smooth-ing pa-ram-e-ter per smooth, or a sin-gle smooth-ing pa-ram-e- Overfull \hbox (128.58029pt too wide) in paragraph at lines 14847--14847 []\T1/pcr/m/n/9 b <- gam(y ~ s(x)+s(f1,x,bs="sz")+s(f2,x,bs="sz")+s(f1,f2,x,bs ="sz",id=1),data=dat,method="REML")[] [3192] [3193] [3194] Underfull \hbox (badness 3396) in paragraph at lines 14993--14996 [][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths of an y num-ber of vari-ables, spec-i-fied via terms like Underfull \hbox (badness 10000) in paragraph at lines 15038--15040 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3195] [3196] [3197] [3198] [3199] [3200] Underfull \hbox (badness 10000) in paragraph at lines 15329--15331 []\T1/pcr/m/n/10 bs="fs" []\T1/ptm/m/n/10 A spe-cial smoother class (see [3201] Underfull \hbox (badness 10000) in paragraph at lines 15363--15367 [][][]\T1/pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][][]\ T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 t2[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m /n/10 tprs[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Duchon.spline[][][][]\T 1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cubic.regression.spline[][][][]\T1/ptm/m/n/ 10 , Underfull \hbox (badness 10000) in paragraph at lines 15363--15367 [][][]\T1/pcr/m/n/10 p.spline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 d.sp line[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 mrf[][][][]\T1/ptm/m/n/10 , [ ][][]\T1/pcr/m/n/10 soap[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Spherical .Spline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 adaptive.smooth[][][][]\T1 /ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15363--15367 [][][]\T1/pcr/m/n/10 user.defined.smooth[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/ m/n/10 smooth.construct.re.smooth.spec[][][][]\T1/ptm/m/n/10 , [3202] [3203] [3204] [3205] [3206] Underfull \hbox (badness 2158) in paragraph at lines 15652--15652 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [3207] Overfull \hbox (48.78088pt too wide) in paragraph at lines 15731--15731 []\T1/pcr/m/n/10 spasm.sp(object,sp,w=rep(1,object$nobs),get.trH=TRUE,block=0, centre=FALSE)[] [3208] [3209] Overfull \hbox (12.78088pt too wide) in paragraph at lines 15865--15865 [] \T1/pcr/m/n/10 signif.stars = getOption("show.signif.stars "),...)[] [3210] [3211] Underfull \hbox (badness 4846) in paragraph at lines 15996--15999 []\T1/ptm/m/n/10 The es-ti-mated co-vari-ance ma-trix of the pa-ram-e-ters (or es-ti-ma-tors if [3212] [3213] [3214] [3215] [3216] [3217] [3218] [3219] [3220] [3221] [3222] [3223] [3224] [3225] [3226] [3227] [3228] [3229] [3230] [3231] Overfull \hbox (120.78088pt too wide) in paragraph at lines 17220--17220 []\T1/pcr/m/n/10 vcov(object, sandwich=FALSE, freq = FALSE, dispersion = NULL, unconditional=FALSE, ...)[] [3232] Underfull \hbox (badness 1715) in paragraph at lines 17242--17243 []\T1/ptm/m/n/10 Basically, just ex-tracts []\T1/pcr/m/n/10 object$Ve[]\T1/ptm/ m/n/10 , []\T1/pcr/m/n/10 object$Vp []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 object $Vc []\T1/ptm/m/n/10 (if avail-able) from a [3233] [3234] [3235] Overfull \hbox (54.78088pt too wide) in paragraph at lines 17433--17433 []\T1/pcr/m/n/10 XWXd(X,w,k,ks,ts,dt,v,qc,nthreads=1,drop=NULL,ar.stop=-1,ar.r ow=-1,ar.w=-1, Overfull \hbox (48.78088pt too wide) in paragraph at lines 17435--17435 []\T1/pcr/m/n/10 XWyd(X,w,y,k,ks,ts,dt,v,qc,drop=NULL,ar.stop=-1,ar.row=-1,ar. w=-1,lt=NULL)[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 17437--17437 []\T1/pcr/m/n/10 diagXVXd(X,V,k,ks,ts,dt,v,qc,drop=NULL,nthreads=1,lt=NULL,rt= NULL)[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 17438--17438 []\T1/pcr/m/n/10 ijXVXd(i,j,X,V,k,ks,ts,dt,v,qc,drop=NULL,nthreads=1,lt=NULL,r t=NULL)[] [3236] Underfull \hbox (badness 10000) in paragraph at lines 17458--17459 []\T1/ptm/m/n/10 Negative to ig-nore. Oth-er-wise sum rows Underfull \hbox (badness 1668) in paragraph at lines 17458--17459 []\T1/pcr/m/n/10 (ar.stop[i-1]+1):ar.stop[i] []\T1/ptm/m/n/10 of the rows se-le cted by []\T1/pcr/m/n/10 ar.row [3237] [3238] [3239] [3240] Overfull \hbox (20.58041pt too wide) in paragraph at lines 17656--17656 []\T1/pcr/m/n/9 ## 1. If the zero inflation rate becomes decoupled from the li near predictor,[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 17657--17657 []\T1/pcr/m/n/9 ## it is possible for the linear predictor to be almost unboun ded in regions[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 17669--17669 []\T1/pcr/m/n/9 ## 3. Refit fixing the theta parameters at their estimated val ues, to check we[] [3241] [3242] [3243]) (./nlme-pkg.tex [3244] Chapter 25. [3245] Underfull \hbox (badness 1009) in paragraph at lines 78--87 []\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served - fit-ted) are used; else, if [3246] Underfull \hbox (badness 1009) in paragraph at lines 168--177 []\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served - fit-ted) are used; else, if [3247] [3248] [3249] [3250] Overfull \hbox (4.38043pt too wide) in paragraph at lines 448--448 [] \T1/pcr/m/n/9 lme(rate ~(pressure + I(pressure^2) + I(pressure^3) + I(pres sure^4))*QB,[] [3251] [3252] [3253] Overfull \hbox (20.58041pt too wide) in paragraph at lines 589--589 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 251-254 --------------------------- ---------------[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 605--605 []\T1/pcr/m/n/9 # Compare an "lme" object with a "gls" object (test would be n on-sensical!)[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 608--608 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 222-225 --------------------------- ---------------[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 615--615 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 352-365 --------------------------- ---------------[] [3254] [3255] [3256] [3257] [3258] [3259] [3260] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1078--1078 [] \T1/pcr/m/n/9 y = "Distance from pituitary to pterygomaxil lary fissure"),[] [3261] [3262] Underfull \hbox (badness 5446) in paragraph at lines 1140--1142 []\T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 http://stat.gamma.rug.nl/snijders/multilevel .htm[]\T1/ptm/m/n/10 ', the first edi-tion of [3263] [3264] [3265] [3266] [3267] [3268] [3269] Underfull \hbox (badness 10000) in paragraph at lines 1617--1620 [][][]\T1/pcr/m/n/10 lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fixed. effects.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 ranef.lmList[][][][ ]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.ranef.lmList[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 3780) in paragraph at lines 1634--1636 []\T1/ptm/m/n/10 This method func-tion ex-tracts the co-ef-fi-cients as-so-ci-a ted with each com-po-nent of the [3270] [3271] [3272] [3273] [3274] Underfull \hbox (badness 2042) in paragraph at lines 1975--1981 \T1/ptm/m/n/10 is in-ner to the []\T1/pcr/m/n/10 displayLevel []\T1/ptm/m/n/10 group-ing fac-tor. If equal to []\T1/pcr/m/n/10 TRUE[]\T1/ptm/m/n/10 , [3275] [3276] Underfull \hbox (badness 1132) in paragraph at lines 2127--2129 []\T1/ptm/m/n/10 fitted model ob-jects, from which pre-dic-tions can be ex-trac ted us-ing the [3277] [3278] Underfull \hbox (badness 4168) in paragraph at lines 2238--2244 [][][]\T1/pcr/m/n/10 ACF.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corAR MA[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/pcr/m/n/10 Dim.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m /n/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [3279] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2263--2263 [] \T1/pcr/m/n/9 gls(rate ~(pressure + I(pressure^2) + I(pressure^3) + I(pres sure^4))*QB,[] [3280] [3281] [3282] [3283] [3284] [3285] [3286] [3287] Underfull \hbox (badness 10000) in paragraph at lines 2816--2820 [][][]\T1/pcr/m/n/10 corFactor[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cor Matrix.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 recalc.corStruct[ ][][][]\T1/ptm/m/n/10 , [3288] [3289] [3290] [3291] [3292] [3293] [3294] [3295] [3296] [3297] [3298] [3299] Underfull \hbox (badness 6493) in paragraph at lines 3548--3556 [][][]\T1/pcr/m/n/10 corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corGau s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corLin[][][][]\T1/ptm/m/n/10 , [ ][][]\T1/pcr/m/n/10 corRatio[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corSp her[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.corStruct[][][][]\T 1/ptm/m/n/10 , [3300] [3301] [3302] [3303] [3304] [3305] [3306] [3307] [3308] [3309] [3310] [3311] [3312] [3313] [3314] [3315] [3316] [3317] [3318] [3319] [3320] [3321] [3322] Underfull \hbox (badness 10000) in paragraph at lines 5116--5120 [][][]\T1/pcr/m/n/10 getCovariate.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/p cr/m/n/10 getCovariate.data.frame[][][][]\T1/ptm/m/n/10 , [3323] [3324] [3325] [3326] [3327] [3328] [3329] Underfull \hbox (badness 10000) in paragraph at lines 5540--5543 [][][]\T1/pcr/m/n/10 getGroups.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/ m/n/10 getGroups.data.frame[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 getGro ups.gls[][][][]\T1/ptm/m/n/10 , [3330] [3331] [3332] [3333] [3334] [3335] [3336] [3337] [3338] Underfull \hbox (badness 2799) in paragraph at lines 6044--6050 \T1/ptm/m/n/10 covariance ma-trix, ei-ther []\T1/pcr/m/n/10 "random.effects" [] \T1/ptm/m/n/10 for the random-effects [3339] Underfull \hbox (badness 7133) in paragraph at lines 6105--6109 []\T1/ptm/m/n/10 an op-tional data frame con-tain-ing the vari-ables named in [ ]\T1/pcr/m/n/10 model[]\T1/ptm/m/n/10 , [3340] Underfull \hbox (badness 2057) in paragraph at lines 6194--6205 [][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gl sControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 glsObject[][][][]\T1/ptm/ m/n/10 , [][][]\T1/pcr/m/n/10 glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m /n/10 plot.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.gls[][][][] \T1/ptm/m/n/10 , [3341] Underfull \hbox (badness 10000) in paragraph at lines 6258--6260 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3342] [3343] [3344] [3345] Underfull \hbox (badness 7133) in paragraph at lines 6505--6509 []\T1/ptm/m/n/10 an op-tional data frame con-tain-ing the vari-ables named in [ ]\T1/pcr/m/n/10 model[]\T1/ptm/m/n/10 , [3346] Underfull \hbox (badness 10000) in paragraph at lines 6602--6608 [][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gn lsControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gnlsObject[][][][]\T1/pt m/m/n/10 , [][][]\T1/pcr/m/n/10 gnlsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc r/m/n/10 predict.gnls[][][][]\T1/ptm/m/n/10 , Overfull \hbox (54.78088pt too wide) in paragraph at lines 6629--6629 []\T1/pcr/m/n/10 gnlsControl(maxIter = 50, nlsMaxIter = 7, msMaxIter = 50, min Scale = 0.001, [3347] Underfull \hbox (badness 10000) in paragraph at lines 6667--6669 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3348] [3349] [3350] [3351] Underfull \hbox (badness 10000) in paragraph at lines 6936--6943 [][][]\T1/pcr/m/n/10 formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gappl y[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gsummary[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.nff GroupedData[][][][]\T1/ptm/m/n/10 , [3352] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6954--6954 [] \T1/pcr/m/n/9 y = "Distance from pituitary to pterygomaxilla ry fissure" ),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6959--6959 []\T1/pcr/m/n/9 fm1 <- lme( Orth.new ) # fixed and groups formulae extracted from object[] Underfull \hbox (badness 2875) in paragraph at lines 6981--6983 []\T1/ptm/m/n/10 an ob-ject to be sum-ma-rized - usu-ally a []\T1/pcr/m/n/10 gr oupedData []\T1/ptm/m/n/10 ob-ject or a [3353] [3354] [3355] Underfull \hbox (badness 10000) in paragraph at lines 7196--7202 [][][]\T1/pcr/m/n/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr /m/n/10 Initialize.glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initi alize.lmeStruct[][][][]\T1/ptm/m/n/10 , [3356] [3357] [3358] Underfull \hbox (badness 1997) in paragraph at lines 7341--7349 []\T1/ptm/m/n/10 an op-tional list with con-trol pa-ram-e-ters for the ini-tial -iza-tion and op-ti- Underfull \hbox (badness 2205) in paragraph at lines 7341--7349 \T1/ptm/m/n/10 miza-tion al-go-rithms used in []\T1/pcr/m/n/10 lme[]\T1/ptm/m/n /10 . De-faults to []\T1/pcr/m/n/10 list(niterEM=20, Underfull \hbox (badness 3118) in paragraph at lines 7364--7367 [][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initializ e.reStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.corStruct[][ ][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.varFunc[][][][]\T1/ptm/m/ n/10 , [3359] [3360] [3361] Underfull \hbox (badness 3354) in paragraph at lines 7574--7576 []\T1/ptm/m/n/10 linear model co-ef-fi-cients, only present when []\T1/pcr/m/n/ 10 which []\T1/ptm/m/n/10 is not equal to [3362] [3363] [3364] [3365] [3366] [3367] [3368] [3369] Underfull \hbox (badness 10000) in paragraph at lines 8101--8118 [][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lm e.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lme.groupedData[][][][]\T 1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lmeControl[][][][]\T1/ptm/m/n/10 , [][][]\T 1/pcr/m/n/10 lmeObject[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 8101--8118 [][][]\T1/pcr/m/n/10 lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lmL ist[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/pcr/m/n/10 plot.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 qqnorm.lme[][][][]\T1/ ptm/m/n/10 , [3370] Overfull \hbox (12.78088pt too wide) in paragraph at lines 8144--8144 [] \T1/pcr/m/n/10 subset, method, na.action, control, contrasts, keep.data = TRUE)[] Underfull \hbox (badness 1642) in paragraph at lines 8153--8175 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o f the form [3371] [3372] [3373] [3374] Overfull \hbox (36.78088pt too wide) in paragraph at lines 8418--8418 []\T1/pcr/m/n/10 lmeControl(maxIter = 50, msMaxIter = 50, tolerance = 1e-6, ni terEM = 25, Underfull \hbox (badness 1189) in paragraph at lines 8443--8445 []\T1/ptm/m/n/10 maximum num-ber of eval-u-a-tions of the ob-jec-tive func-tion per-mit-ted for [3375] Underfull \hbox (badness 10000) in paragraph at lines 8466--8468 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is Overfull \hbox (9.78043pt too wide) in paragraph at lines 8509--8509 []\T1/pcr/m/n/9 # request that information on the evolution of the ms iteratio ns be printed[] [3376] [3377] [3378] [3379] [3380] [3381] [3382] [3383] [3384] [3385] [3386] [3387] Underfull \hbox (badness 10000) in paragraph at lines 9266--9273 [][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 ,[][][]\T1/pcr/m/n/10 gls[][][][ ]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 logLik.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 logLik.glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/ n/10 logLik.lmeStruct[][][][]\T1/ptm/m/n/10 , Overfull \hbox (4.38043pt too wide) in paragraph at lines 9277--9277 []\T1/pcr/m/n/9 fm1 <- lme(distance ~ Sex * age, Orthodont, random = ~ age, me thod = "ML") [3388] [3389] [3390] [3391] [3392]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9628 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl icate ignored \relax l.9628 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3393] Underfull \hbox (badness 10000) in paragraph at lines 9648--9651 []\T1/ptm/m/n/10 a ma-trix, or list of ma-tri-ces, with the same di-men-sions a s Underfull \hbox (badness 3108) in paragraph at lines 9692--9695 []\T1/ptm/m/n/10 a ma-trix with the new val-ues to be as-signed to the positive -definite Underfull \hbox (badness 2521) in paragraph at lines 9692--9695 \T1/ptm/m/n/10 ma-trix rep-re-sented by []\T1/pcr/m/n/10 object[]\T1/ptm/m/n/10 . Must have the same di-men-sions as [3394] [3395] [3396] [3397] [3398] [3399] [3400] [3401] [3402] [3403] [3404] Overfull \hbox (18.78088pt too wide) in paragraph at lines 10362--10362 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, weights, [3405] Overfull \hbox (18.78088pt too wide) in paragraph at lines 10366--10366 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, weights,[] Underfull \hbox (badness 1596) in paragraph at lines 10395--10421 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3406] [3407] Overfull \hbox (18.78088pt too wide) in paragraph at lines 10549--10549 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, weights,[] [3408] [3409] [3410] Overfull \hbox (36.78088pt too wide) in paragraph at lines 10700--10700 [] \T1/pcr/m/n/10 opt = c("nlminb", "nlm"), natural = TRUE, sigma = NULL, ...)[] Underfull \hbox (badness 2213) in paragraph at lines 10711--10716 []\T1/ptm/m/n/10 maximum num-ber of it-er-a-tions for [][][]\T1/pcr/m/n/10 nlmi nb[][][] []\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 iter.max[]\T1/ptm/m/n/10 ) or the [ ][][]\T1/pcr/m/n/10 nlm[][][] Underfull \hbox (badness 6961) in paragraph at lines 10733--10737 []\T1/ptm/m/n/10 a log-i-cal value passed as the []\T1/pcr/m/n/10 trace []\T1/p tm/m/n/10 to [][][]\T1/pcr/m/n/10 nlminb[][][](.., control= [3411] Underfull \hbox (badness 10000) in paragraph at lines 10752--10754 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3412] [3413] [3414] [3415] Overfull \hbox (96.18033pt too wide) in paragraph at lines 11048--11048 []\T1/pcr/m/n/9 cfm1 <- confint(fm1) # via profiling each % FIXME: only *one* message instead of one *each*[] Overfull \hbox (90.78033pt too wide) in paragraph at lines 11049--11049 []\T1/pcr/m/n/9 mat.class <- class(matrix(1)) # ("matrix", "array") for R >= 4 .0.0; ("matrix" in older R)[] [3416] [3417] [3418] [3419] [3420] [3421] Overfull \hbox (25.98041pt too wide) in paragraph at lines 11439--11439 []\T1/pcr/m/n/9 example(compareFits) # cF12 <- compareFits(coef(lmList(Orthodo nt)), .. lme(*)) [3422] [3423] [3424] [3425] [3426] [3427] Underfull \hbox (badness 6268) in paragraph at lines 11826--11836 [][][]\T1/pcr/m/n/10 pdBlocked[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdC ompSymm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdDiag[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/pcr/m/n/10 pdFactor[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdIdent[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/pcr/m/n/10 pdMatrix[][][][]\T1/ptm/m/n/10 , [3428] [3429] [3430] [3431] Underfull \hbox (badness 10000) in paragraph at lines 12087--12093 [][][]\T1/pcr/m/n/10 as.matrix.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/ 10 coef.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdBlocked[][][][]\T1 /ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/ pcr/m/n/10 pdConstruct[][][][]\T1/ptm/m/n/10 , [3432] [3433] [3434] [3435] [3436] Underfull \hbox (badness 6876) in paragraph at lines 12409--12411 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 value []\T1/ptm/m/n/10 is an \T1/ptm/m/it/ 10 ini-tial-ized []\T1/pcr/m/n/10 pdMat []\T1/ptm/m/n/10 ob-ject, []\T1/pcr/m/n /10 object []\T1/ptm/m/n/10 will be con-structed from [3437] [3438] Underfull \hbox (badness 2452) in paragraph at lines 12565--12572 [][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdC ompSymm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdDiag[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/pcr/m/n/10 pdIdent[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdNatural[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdSymm[][][][]\T1/ptm/m/ n/10 , [][][]\T1/pcr/m/n/10 reStruct[][][][]\T1/ptm/m/n/10 , [3439] Underfull \hbox (badness 10000) in paragraph at lines 12631--12637 [][][]\T1/pcr/m/n/10 as.matrix.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/ 10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdFactor[][][][]\T1/p tm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/ n/10 pdMatrix.reStruct[][][][]\T1/ptm/m/n/10 , [3440] [3441] [3442] [3443] [3444] [3445] [3446] [3447] [3448] Overfull \hbox (25.98041pt too wide) in paragraph at lines 13220--13220 []\T1/pcr/m/n/9 example(compareFits) # cF12 <- compareFits(coef(lmList(Orthodo nt)), .. lme(*)) [3449] [3450] [3451] [3452] [3453] Overfull \hbox (9.78043pt too wide) in paragraph at lines 13585--13585 []\T1/pcr/m/n/9 plot(fm1, resid(., type = "pool") ~ fitted(.) | Sex, abline = 0, id = 0.05)[] [3454] Underfull \hbox (badness 10000) in paragraph at lines 13612--13615 []\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nffGroupe dData[]\T1/ptm/m/n/10 , rep-re-sent-ing a [3455] Underfull \hbox (badness 1838) in paragraph at lines 13655--13662 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If []\T1/pcr/m/ n/10 TRUE []\T1/ptm/m/n/10 and ei-ther []\T1/pcr/m/n/10 inner Underfull \hbox (badness 3713) in paragraph at lines 13655--13662 []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 innerGroups []\T1/ptm/m/n/10 are non-[]\T1 /pcr/m/n/10 NULL[]\T1/ptm/m/n/10 , a leg-end for the dif-fer-ent []\T1/pcr/m/n/ 10 inner Overfull \hbox (12.78088pt too wide) in paragraph at lines 13712--13712 []\T1/pcr/m/n/10 plot(x, outer, inner, innerGroups, xlab, ylab, strip, aspect, panel,[] [3456] Underfull \hbox (badness 10000) in paragraph at lines 13719--13722 []\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nfnGroupe dData[]\T1/ptm/m/n/10 , rep-re-sent-ing a Underfull \hbox (badness 2469) in paragraph at lines 13719--13722 []\T1/pcr/m/n/10 groupedData []\T1/ptm/m/n/10 ob-ject with a nu-meric pri-mary co-vari-ate and a sin-gle [3457] Underfull \hbox (badness 10000) in paragraph at lines 13827--13830 []\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nmGrouped Data[]\T1/ptm/m/n/10 , rep-re-sent-ing a [3458] [3459] Underfull \hbox (badness 10000) in paragraph at lines 13921--13923 [][][]\T1/pcr/m/n/10 groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 c ollapse.groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.nfnGroupe dData[][][][]\T1/ptm/m/n/10 , [3460] [3461] [3462] [3463] [3464] [3465] [3466] [3467] Overfull \hbox (20.58041pt too wide) in paragraph at lines 14445--14445 []\T1/pcr/m/n/9 newOrth <- data.frame(Sex = c("Male","Male","Female","Female", "Male","Male"),[] [3468] [3469] [3470] [3471] [3472] [3473] [3474] [3475] [3476]pdfTeX warning (e xt4): destination with the same identifier (name{Rfn.random.effects}) has been already used, duplicate ignored \relax l.15098 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.random.effects.1}) has been already us ed, duplicate ignored \relax l.15098 ...Extract Random Effects}{random.effects} [3477] [3478] [3479] [3480] [3481] [3482] [3483] [3484] [3485] [3486] [3487] Overfull \hbox (25.98041pt too wide) in paragraph at lines 15734--15734 []\T1/pcr/m/n/9 plot(Remifentanil, type = "l", lwd = 2) # shows the 65 patient s\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 remi profiles [3488] Underfull \hbox (badness 1009) in paragraph at lines 15786--15795 []\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served - fit-ted) are used; else, if [3489] [3490] Overfull \hbox (66.78088pt too wide) in paragraph at lines 15933--15933 [] \T1/pcr/m/n/10 type = c("response", "pearson", "normalized"), asLi st = FALSE, ...)[] [3491] [3492] [3493] [3494] [3495] Underfull \hbox (badness 10000) in paragraph at lines 16268--16274 [][][]\T1/pcr/m/n/10 groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 l me[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/10 , [ ][][]\T1/pcr/m/n/10 solve.reStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 summary.reStruct[][][][]\T1/ptm/m/n/10 , [3496] Overfull \hbox (18.78088pt too wide) in paragraph at lines 16300--16300 [] \T1/pcr/m/n/10 method = c("REML", "ML"), niterEM = c(40, 200), useG en, ...)[] [3497] [3498] [3499] [3500] [3501] [3502] [3503] Underfull \hbox (badness 1728) in paragraph at lines 16786--16789 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3504] [3505] [3506] [3507] [3508] Underfull \hbox (badness 1803) in paragraph at lines 17120--17129 \T1/pcr/m/n/10 of an Identity" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pdIdent[]\ T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "General Positive-Definite, Underfull \hbox (badness 10000) in paragraph at lines 17120--17129 \T1/pcr/m/n/10 Natural Parametrization" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 p dNatural[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "General Underfull \hbox (badness 7888) in paragraph at lines 17120--17129 \T1/pcr/m/n/10 Positive-Definite" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pdSymm[ ]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 data.class(object) [3509] Underfull \hbox (badness 10000) in paragraph at lines 17191--17192 []\T1/pcr/m/n/10 "Constant plus power of variance Underfull \hbox (badness 10000) in paragraph at lines 17192--17193 []\T1/pcr/m/n/10 "Constant plus proportion of variance [3510] [3511] [3512] [3513] Underfull \hbox (badness 10000) in paragraph at lines 17441--17449 [][][]\T1/pcr/m/n/10 varComb[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varCo nstPower[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varConstProp[][][][]\T1/p tm/m/n/10 , [][][]\T1/pcr/m/n/10 varExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m /n/10 varFixed[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varIdent[][][][]\T1 /ptm/m/n/10 , [3514] [3515] [3516] [3517] Overfull \hbox (4.38043pt too wide) in paragraph at lines 17713--17713 []\T1/pcr/m/n/9 # Generate some synthetic data using the two-component error m odel and use Overfull \hbox (25.98041pt too wide) in paragraph at lines 17715--17715 []\T1/pcr/m/n/9 # overparameterisation in the case of a constant term in the v ariance function[] [3518] [3519] [3520] [3521] [3522] [3523] Underfull \hbox (badness 10000) in paragraph at lines 18153--18163 [][][]\T1/pcr/m/n/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n /10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.co rLin[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 18153--18163 [][][]\T1/pcr/m/n/10 Variogram.corRatio[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m /n/10 Variogram.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogr am.corSpher[][][][]\T1/ptm/m/n/10 , [3524] Underfull \hbox (badness 3579) in paragraph at lines 18185--18190 \T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p tm/m/n/10 , in which case a se-quence [3525] Underfull \hbox (badness 3579) in paragraph at lines 18249--18254 \T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p tm/m/n/10 , in which case a se-quence [3526] Underfull \hbox (badness 3579) in paragraph at lines 18312--18317 \T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p tm/m/n/10 , in which case a se-quence [3527] Underfull \hbox (badness 1577) in paragraph at lines 18373--18375 []\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 "[][]corR atio[][][]"[]\T1/ptm/m/n/10 , rep-re-sent-ing an Ra-tio-nal Underfull \hbox (badness 3579) in paragraph at lines 18375--18380 \T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p tm/m/n/10 , in which case a se-quence [3528] Underfull \hbox (badness 3579) in paragraph at lines 18438--18443 \T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p tm/m/n/10 , in which case a se-quence Underfull \hbox (badness 10000) in paragraph at lines 18471--18480 [][][]\T1/pcr/m/n/10 corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Va riogram[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.default[][][][]\ T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 18471--18480 [][][]\T1/pcr/m/n/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/ n/10 Variogram.corLin[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.co rRatio[][][][]\T1/ptm/m/n/10 , [3529] Underfull \hbox (badness 3579) in paragraph at lines 18510--18515 \T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p tm/m/n/10 , in which case a se-quence [3530] [3531] Underfull \hbox (badness 1009) in paragraph at lines 18656--18665 []\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served - fit-ted) are used; else, if [3532] [3533] Underfull \hbox (badness 1009) in paragraph at lines 18788--18797 []\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served - fit-ted) are used; else, if [3534] [3535] [3536] [3537] [3538] [3539] [3540] [3541] [3542]) (./nnet-pkg.tex Chapter 26. pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom} ) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.multinom.1}) has been already used, du plicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} [3543] Overfull \hbox (12.78088pt too wide) in paragraph at lines 71--71 [] \T1/pcr/m/n/10 contrasts = NULL, Hess = FALSE, summ = 0, censored = FALSE,[] [3544] [3545] [3546] Overfull \hbox (15.18042pt too wide) in paragraph at lines 371--371 []\T1/pcr/m/n/9 ir.nn2 <- nnet(species ~ ., data = ird, subset = samp, size = 2, rang = 0.1,[] [3547] Overfull \hbox (4.38043pt too wide) in paragraph at lines 428--428 []\T1/pcr/m/n/9 targets <- matrix(c(rep(c(1,0,0),50), rep(c(0,1,0),50), rep(c( 0,0,1),50)),[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 431--431 []\T1/pcr/m/n/9 ir1 <- nnet(ir[samp,], targets[samp,], size=2, rang=0.1, decay =5e-4, maxit=200)[] [3548] [3549] Overfull \hbox (15.18042pt too wide) in paragraph at lines 511--511 []\T1/pcr/m/n/9 ir.nn2 <- nnet(species ~ ., data = ird, subset = samp, size = 2, rang = 0.1,[] [3550]) (./rpart-pkg.tex Chapter 27. [3551] [3552] [3553] [3554] Overfull \hbox (36.78088pt too wide) in paragraph at lines 324--324 []\T1/pcr/m/n/10 labels(object, digits = 4, minlength = 1L, pretty, collapse = TRUE, ...)[] [3555] Underfull \hbox (badness 2351) in paragraph at lines 349--353 \T1/ptm/m/n/10 age: []\T1/pcr/m/n/10 pretty = 0 []\T1/ptm/m/n/10 im-plies []\T1 /pcr/m/n/10 minlength = 0L[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pretty = NULL []\ T1/ptm/m/n/10 im-plies [3556] [3557] [3558] Underfull \hbox (badness 1442) in paragraph at lines 592--598 []\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 FALSE[]\T1/ptm/m/n/10 , the leaf nodes wil l be at the hor-i-zon-tal plot co-or-di-nates of [3559] [3560] Overfull \hbox (0.78088pt too wide) in paragraph at lines 738--738 [] \T1/pcr/m/n/10 filename = paste(deparse(substitute(tree)), ".ps", sep = ""),[] Underfull \hbox (badness 10000) in paragraph at lines 771--775 []\T1/ptm/m/n/10 Logical. If []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 (de-fault), adds to the la-bel Underfull \hbox (badness 1142) in paragraph at lines 771--775 \T1/pcr/m/n/10 #events level1/ #events level2/ \T1/ptm/m/n/10 etc. for method [ ]\T1/pcr/m/n/10 class[]\T1/ptm/m/n/10 , \T1/pcr/m/n/10 n [3561] [3562] [3563] Overfull \hbox (25.98041pt too wide) in paragraph at lines 915--915 []\T1/pcr/m/n/9 predict(fit, type = "matrix") # level number, class frequencie s, probabilities[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 934--934 []\T1/pcr/m/n/10 print(x, minlength = 0, spaces = 2, cp, digits = getOption("d igits"),[] [3564] [3565] [3566] [3567] Overfull \hbox (6.78088pt too wide) in paragraph at lines 1180--1180 []\T1/pcr/m/n/10 rpart(formula, data, weights, subset, na.action = na.rpart, m ethod, Overfull \hbox (12.78088pt too wide) in paragraph at lines 1181--1181 [] \T1/pcr/m/n/10 model = FALSE, x = FALSE, y = TRUE, parms, control, cos t, ...)[] Underfull \hbox (badness 2846) in paragraph at lines 1243--1245 []\T1/ptm/m/n/10 a list of op-tions that con-trol de-tails of the []\T1/pcr/m/n /10 rpart []\T1/ptm/m/n/10 al-go-rithm. See [3568] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1287--1287 []\T1/pcr/m/n/9 par(mfrow = c(1,2), xpd = NA) # otherwise on some devices the text is clipped[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 1303--1303 []\T1/pcr/m/n/10 rpart.control(minsplit = 20, minbucket = round(minsplit/3), c p = 0.01, Overfull \hbox (60.78088pt too wide) in paragraph at lines 1304--1304 [] \T1/pcr/m/n/10 maxcompete = 4, maxsurrogate = 5, usesurrogate = 2, xval = 10,[] [3569] [3570] [3571] [3572] [3573] [3574] [3575] Underfull \hbox (badness 1565) in paragraph at lines 1760--1763 []\T1/ptm/m/n/10 the ploidy sta-tus of the tu-mor, from flow cy-tom-e-try. Val- ues are `[]\T1/pcr/m/n/10 diploid[]\T1/ptm/m/n/10 ', [3576] Overfull \hbox (12.78088pt too wide) in paragraph at lines 1854--1854 [] \T1/pcr/m/n/10 pretty = NULL, digits = getOption("digits") - 3, use.n = FALSE,[] [3577] [3578] [3579]) (./spatial-pkg.tex [3580] Chapter 28. [3581] [3582] [3583] [3584] [3585] [3586] Underfull \hbox (badness 10000) in paragraph at lines 423--427 [3587] [3588] [3589] [3590] [3591] [3592] [3593] [3594] [3595] [3596] [3597] [3598] [3599]) (./survival-pkg.tex [3600] Chapter 29. [3601] [3602] Overfull \hbox (31.3804pt too wide) in paragraph at lines 173--173 []\T1/pcr/m/n/9 aareg(formula = Surv(time, status) ~ age + sex + ph.ecog, data = lung, nmin = 1[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 192--192 []\T1/pcr/m/n/9 ## Not run: lines(lfit2[4], col=2) # Nearly the same, until t he last point[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 195--195 []\T1/pcr/m/n/9 # Chronic Granuomatous Disease. See section 8.5 of Therneau a nd Grambsch.[] [3603] [3604] Underfull \hbox (badness 6412) in paragraph at lines 284--286 []\T1/ptm/m/n/10 an op-tional list or vec-tor of group-ing el-e-ments, each as long as [3605] [3606]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.aml}) has been already used, duplicate ignored \relax l.384 ... Myelogenous Leukemia survival data}{aml} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.aml.1}) has been already used, duplica te ignored \relax l.384 ... Myelogenous Leukemia survival data}{aml} [3607] Overfull \hbox (9.78043pt too wide) in paragraph at lines 485--485 []\T1/pcr/m/n/9 fit <- coxph(Surv(futime, fustat) ~ resid.ds *rx + ecog.ps, da ta = ovarian) Overfull \hbox (4.38043pt too wide) in paragraph at lines 487--487 []\T1/pcr/m/n/9 fit2 <- coxph(Surv(futime, fustat) ~ resid.ds +rx + ecog.ps, d ata=ovarian)[] [3608] Overfull \hbox (6.78088pt too wide) in paragraph at lines 525--525 [] \T1/pcr/m/n/10 survreg(Surv(time, status) ~ age + sex + factor(ph.ecog), lung)[] [3609] Underfull \hbox (badness 1178) in paragraph at lines 605--615 []\T1/ptm/m/n/10 If H(t; z) is the pre-dicted cu-mu-la-tive haz-ard for an ob-s er-va-tion with co-vari-ate vec-tor z, [3610] [3611] [3612] Overfull \hbox (20.58041pt too wide) in paragraph at lines 792--792 []\T1/pcr/m/n/9 py <- pseudo(survfit(Surv(time, status) ~1, lung), time=730) # 2 year survival Overfull \hbox (30.78088pt too wide) in paragraph at lines 808--808 []\T1/pcr/m/n/10 brier(fit, times, newdata, ties = TRUE, detail = FALSE, timef ix = TRUE, [3613] Overfull \hbox (48.78088pt too wide) in paragraph at lines 891--891 [] \T1/pcr/m/n/10 method =c("Prentice","SelfPrentice","LinYing","I.Borgan", "II.Borgan"),[] [3614] [3615] [3616] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1034--1034 [] \T1/pcr/m/n/9 subcoh = ~subcohort, id=~seqno, stratum=~instit, cohort.siz e=stratsizes,[] [3617] [3618] Underfull \hbox (badness 1097) in paragraph at lines 1205--1207 []\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi al and negative-binomial data. Overfull \hbox (4.38043pt too wide) in paragraph at lines 1225--1225 []\T1/pcr/m/n/9 ppois(4, 10.24153) #chance of seeing 4 or fewer events wit h large rate[] [3619] [3620] Overfull \hbox (31.3804pt too wide) in paragraph at lines 1340--1340 []\T1/pcr/m/n/9 ## Not run: clogit(case ~ spontaneous + induced + strata(strat um), data=infert) [3621] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1401--1401 []\T1/pcr/m/n/9 marginal.model <- coxph(Surv(time, status) ~ rx, data= rats, c luster=litter, pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) h as been already used, duplicate ignored \relax l.1407 ...erapy for Stage B/C colon cancer}{colon} [3622] [3623] Overfull \hbox (72.78088pt too wide) in paragraph at lines 1507--1507 [] \T1/pcr/m/n/10 influence=0, ranks = FALSE, reverse=FALSE, timefix=TRUE, ke epstrata=10, ...)[] [3624] [3625] [3626] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1733--1733 []\T1/pcr/m/n/9 options(na.action = na.exclude) # predict all 1384 obs, incl uding missing[] [3627] Overfull \hbox (18.78088pt too wide) in paragraph at lines 1827--1827 []\T1/pcr/m/n/10 cox.zph(fit, transform="km", terms=TRUE, singledf=FALSE, glob al=TRUE) [3628] [3629] [3630] [3631] Underfull \hbox (badness 10000) in paragraph at lines 2145--2150 []\T1/ptm/m/n/10 One user mis-take that has re-cently arisen is to slav-ishly f ol-low the ad-vice of Underfull \hbox (badness 7486) in paragraph at lines 2145--2150 \T1/ptm/m/n/10 some cod-ing guides and prepend []\T1/pcr/m/n/10 survival:: []\T 1/ptm/m/n/10 onto ev-er-thing, in-clud-ing the spe- Underfull \hbox (badness 10000) in paragraph at lines 2145--2150 \T1/ptm/m/n/10 cial terms, e.g., []\T1/pcr/m/n/10 survival::coxph(survival:Surv (time, status) ~ age + [3632] [3633] Underfull \hbox (badness 3861) in paragraph at lines 2257--2261 [][][]\T1/pcr/m/n/10 coxph.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 coxphms.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 coxph.control[][][] []\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cluster[][][][]\T1/ptm/m/n/10 , [][][]\ T1/pcr/m/n/10 strata[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Surv[][][][]\ T1/ptm/m/n/10 , [3634] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2312--2312 []\T1/pcr/m/n/10 iter.max = 20, toler.inf = sqrt(eps), outer.max = 10, timefix =TRUE)[] [3635] [3636] [3637] [3638] [3639] [3640] [3641] [3642] [3643] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2942--2942 [] \T1/pcr/m/n/9 [1] "extreme" "logistic" "gaussian" "weibull" " exponential"[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2983--2983 []\T1/pcr/m/n/10 finegray(formula, data, weights, subset, na.action= na.pass, etype, [3644] [3645] [3646] [3647] Overfull \hbox (12.78088pt too wide) in paragraph at lines 3227--3227 []\T1/pcr/m/n/10 frailty.t(x, sparse = (nclass > 5), theta, df, eps = 1e-05, t df = 5,[] [3648] [3649] [3650] [3651] Underfull \hbox (badness 1019) in paragraph at lines 3489--3491 []\T1/ptm/m/n/10 outcome: []\T1/pcr/m/n/10 censor[]\T1/ptm/m/n/10 , []\T1/pcr/m /n/10 thymic lymphoma[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 reticulum cell sarcoma other [3652] [3653] Overfull \hbox (15.18042pt too wide) in paragraph at lines 3634--3634 []\T1/pcr/m/n/9 kfit <- coxph(Surv(time, status)~ age + sex + disease + frailt y(id), kidney) [3654] Overfull \hbox (36.7804pt too wide) in paragraph at lines 3669--3669 [] \T1/pcr/m/n/9 factor(c(0, 1, 2,1,0,2), 0:2, c("censored", "progre ssion", "death")))[] Underfull \hbox (badness 1389) in paragraph at lines 3683--3685 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with Overfull \hbox (12.78088pt too wide) in paragraph at lines 3694--3694 [] \T1/pcr/m/n/10 conf.type = c("log", "log-log", "plain", "logit", "ar csin"),[] [3655] [3656] Overfull \hbox (36.7804pt too wide) in paragraph at lines 3835--3835 [] \T1/pcr/m/n/9 rmap=list(sex=sex, age=age*365.35, year=as.Da te(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 1979/01/01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )))[] [3657] [3658] Overfull \hbox (467.89665pt too wide) in alignment at lines 3976--3976 [] [] [3659] Underfull \vbox (badness 10000) has occurred while \output is active [3660] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4098--4098 []\T1/pcr/m/n/9 # surprise) but their rates of conversion to PCM are essential ly the same.[] [3661] [3662] [3663] [3664] [3665] [3666] [3667] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4549--4549 [] \T1/pcr/m/n/9 entry.dt = as.Date(paste("2011", 1:10, "5" , sep=\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 -\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )))[] [3668] [3669] Overfull \hbox (15.18042pt too wide) in paragraph at lines 4699--4699 []\T1/pcr/m/n/9 tdata <- data.frame(x= lung$age, y = 10*log(lung$age-35) + rno rm(228, 0, 2))[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4704--4704 []\T1/pcr/m/n/9 knots <- unlist(attributes(fit1$model[[2]])[c(\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 Boundary.knots\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 , \TS1/pcr/m/n/9 '\T1 /pcr/m/n/9 knots\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )])[] [3670] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4708--4708 []\T1/pcr/m/n/9 unname(coef(fit1)[-1] - coef(fit1)[1]) # differences: yhat[2: 4] - yhat[1][] [3671] [3672] [3673] Overfull \vbox (11.01616pt too high) has occurred while \output is active [3674] [3675] [3676] Overfull \hbox (0.78088pt too wide) in paragraph at lines 5131--5131 [] \T1/pcr/m/n/10 pch=3, col=1, lty=1, lwd=1, cex=1, log=FALSE, xscale=1, ysca le=1,[] [3677] [3678] [3679] Overfull \hbox (24.78088pt too wide) in paragraph at lines 5369--5369 []\T1/pcr/m/n/10 se.fit=FALSE, na.action=na.pass, terms=names(object$assign), collapse,[] [3680] [3681] Overfull \hbox (9.78043pt too wide) in paragraph at lines 5522--5522 []\T1/pcr/m/n/9 mresid <- (lung$status-1) - predict(fit, type=\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 expected\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ) #Martingale resid[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 5530--5530 [] \T1/pcr/m/n/9 predict(fit, reference="sample") + sum(coef(fit) * fit$means , na.rm=TRUE)[] [3682] [3683] Overfull \hbox (25.98041pt too wide) in paragraph at lines 5616--5616 []\T1/pcr/m/n/9 pct <- 1:98/100 # The 100th percentile of predicted survival is at +infinity[] [3684] Overfull \hbox (6.78088pt too wide) in paragraph at lines 5694--5694 [] \T1/pcr/m/n/10 signif.stars = getOption("show.signif.stars"), expand=FALSE , ...)[] [3685] Underfull \hbox (badness 1852) in paragraph at lines 5766--5768 []\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.survfit"[]\T1/pt m/m/n/10 , which is the re-sult of the [3686] [3687] [3688] [3689] Overfull \hbox (20.58041pt too wide) in paragraph at lines 6020--6020 []\T1/pcr/m/n/9 rhat <- predict(rfit, newdata=expand.grid(ph.ecog=0:3, sex=1:2 ), se.fit=TRUE)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6032--6032 []\T1/pcr/m/n/9 # the estimate for ph.ecog=3 is very unstable (n=1), pseudoval ues smooth it.[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6034--6034 []\T1/pcr/m/n/9 # In all the above we should be using the robust variance, e.g ., svyglm, but[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 6058--6058 []\T1/pcr/m/n/10 pspline(x, df=4, theta, nterm=2.5 * df, degree=3, eps=0.1, me thod, Overfull \hbox (36.78088pt too wide) in paragraph at lines 6059--6059 [] \T1/pcr/m/n/10 Boundary.knots=range(x), intercept=FALSE, penalty=TRUE, co mbine, ...)[] [3690] [3691] [3692] Overfull \hbox (30.78088pt too wide) in paragraph at lines 6222--6222 [] \T1/pcr/m/n/10 py <- pyears(futime ~ rx, rmap=list(age=age, sex=sex, year= entry.dt),[] [3693] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6324--6324 []\T1/pcr/m/n/9 pfit <- pyears(Surv(ptime/365.25, pstat) ~ temp.yr + temp.age + sex, mgus,[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6345--6345 []\T1/pcr/m/n/9 fit1 <- pyears(Surv(stop/365.25, event) ~ cut(age + 48, c(0,50 ,60,70,100)) +[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 6347--6347 []\T1/pcr/m/n/9 fit2 <- pyears(Surv(stop/365.25, event) ~ tcut(age + 48, c(0,5 0,60,70,100)) +[] [3694] [3695] [3696] [3697] Underfull \vbox (badness 3168) has occurred while \output is active [3698] [3699] [3700] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6801--6801 []\T1/pcr/m/n/9 gfit <- survfit(Surv(day1, day2, status) ~ batch, braking, id= locomotive)[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 6803--6803 [] \T1/pcr/m/n/9 xlab="Locomotive Age in Months", ylab="Mean cumulative nu mber replacements")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6806--6806 []\T1/pcr/m/n/9 # natural target, an estimate of the number of replacements b y a given time[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6808--6808 []\T1/pcr/m/n/9 # When two valve seats failed at the same inspection, we need to jitter one[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6810--6810 []\T1/pcr/m/n/9 ties <- which(with(valveSeat, diff(id)==0 & diff(time)==0)) # first of a tie[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6814--6814 []\T1/pcr/m/n/9 vdata$time1 <- ifelse(!duplicated(vdata$id), 0, c(0, temp[-len gth(temp)]))[] Overfull \hbox (42.78088pt too wide) in paragraph at lines 6841--6841 [] \T1/pcr/m/n/10 collapse=FALSE, weighted= (type %in% c("dfbeta", "dfbe tas")), ...)[] [3701] [3702] Overfull \hbox (36.78088pt too wide) in paragraph at lines 6935--6935 [] \T1/pcr/m/n/10 type="pstate", collapse=FALSE, weighted= collapse, data.f rame=FALSE,[] [3703] Overfull \hbox (6.78088pt too wide) in paragraph at lines 7034--7034 []\T1/pcr/m/n/10 residuals(object, type=c("response", "deviance","dfbeta","dfb etas",[] Underfull \hbox (badness 1043) in paragraph at lines 7046--7049 []\T1/pcr/m/n/10 "dfbetas"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "working"[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 "ldcase"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lsresp "[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ldshape"[]\T1/ptm/m/n/10 , and [3704] [3705] [3706] [3707] [3708] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7353--7353 []\T1/pcr/m/n/9 lfit1 <- survreg(Surv(time, status) ~ age + ridge(ph.ecog, the ta=5), lung)[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 7354--7354 []\T1/pcr/m/n/9 lfit2 <- survreg(Surv(time, status) ~ sex + ridge(age, ph.ecog , theta=1), lung)[] [3709] [3710] [3711] Overfull \hbox (72.78088pt too wide) in paragraph at lines 7544--7544 []\T1/pcr/m/n/10 rttright(formula, data, weights, subset, na.action, times, id , timefix = TRUE, [3712] Overfull \hbox (42.18039pt too wide) in paragraph at lines 7627--7627 []\T1/pcr/m/n/9 cdf <- cdf[!duplicated(aml$time[index], fromLast=TRUE)] # rem ove duplicate times[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 7631--7631 []\T1/pcr/m/n/9 wt2 <- rttright(Surv(dtime, death) ~ hormon, rotterdam, times= 365*c(3, 5))[] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solder}) has been already used, duplicate ignored \relax l.7635 ...ata from a soldering experiment}{solder} [3713] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7690--7690 []\T1/pcr/m/n/9 dummy <- expand.grid(Opening= c("S", "M", "L"), Solder=c("Thin ", "Thick"))[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 7692--7692 [] \T1/pcr/m/n/9 dimnames=list(Opening= c("S", "M", "L"), Solder=c( "Thin", "Thick")))[] [3714] Overfull \hbox (24.78088pt too wide) in paragraph at lines 7752--7752 []\T1/pcr/m/n/10 statefig(layout, connect, margin = 0.03, box = TRUE, cex = 1, col = 1, [3715] [3716] [3717] [3718] [3719] Overfull \hbox (42.78088pt too wide) in paragraph at lines 8118--8118 []\T1/pcr/m/n/10 event = TRUE, pyears = TRUE, expected = TRUE, rate = FALSE, r r =expected,[] Overfull \hbox (36.78088pt too wide) in paragraph at lines 8119--8119 []\T1/pcr/m/n/10 ci.r = FALSE, ci.rr = FALSE, totals=FALSE, legend = TRUE, vli ne = FALSE,[] [3720] [3721] [3722] Overfull \hbox (78.78088pt too wide) in paragraph at lines 8277--8277 [] \T1/pcr/m/n/10 extend=FALSE, rmean=getOption(\TS1/pcr/m/n/10 '\T1/pcr/m/n/ 10 survfit.rmean\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 ), data.frame=FALSE, dosum, ... )[] Overfull \hbox (36.78088pt too wide) in paragraph at lines 8280--8280 [] \T1/pcr/m/n/10 extend=FALSE, rmean=getOption(\TS1/pcr/m/n/10 '\T1/pcr/m/n/ 10 survfit.rmean\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 ), data.frame=FALSE, ...)[] [3723] [3724] Overfull \hbox (54.78088pt too wide) in paragraph at lines 8471--8471 [] \T1/pcr/m/n/10 type=c(\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 right\TS1/pcr/m/n/ 10 '\T1/pcr/m/n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 left\TS1/pcr/m/n/10 '\T1/p cr/m/n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 interval\TS1/pcr/m/n/10 '\T1/pcr/m/ n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 counting\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 interval2\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 , \T S1/pcr/m/n/10 '\T1/pcr/m/n/10 mstate\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 ),[] [3725] [3726] [3727] Underfull \hbox (badness 1253) in paragraph at lines 8750--8753 []\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 median[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 quantile []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 plot []\T1/ptm/m/n/10 meth-ods first con-struct a sur-vival curve us-ing [3728] [3729] Overfull \hbox (30.78088pt too wide) in paragraph at lines 8889--8889 []\T1/pcr/m/n/10 survcheck(formula, data, subset, na.action, id, istate, istat e0="(s0)", [3730] [3731] Overfull \hbox (12.78088pt too wide) in paragraph at lines 9021--9021 []\T1/pcr/m/n/10 survcondense(formula, data, subset, weights, na.action= na.pa ss, id, [3732] [3733] [3734] Overfull \hbox (9.78043pt too wide) in paragraph at lines 9221--9221 []\T1/pcr/m/n/9 check <- coxph(Surv(time, status) ~ factor(pat.karno) + strata (inst), lung)[] [3735] Overfull \hbox (36.7804pt too wide) in paragraph at lines 9227--9227 [] \T1/pcr/m/n/9 rmap= list(age=(accept.dt - birth.dt), sex=1 , year=accept.dt),[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 9252--9252 [] \T1/pcr/m/n/10 method=c("ederer", "hakulinen", "conditional", "indiv idual.h",[] Underfull \hbox (badness 1038) in paragraph at lines 9294--9300 []\T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre -dicted sur-vival [3736] Overfull \hbox (48.78088pt too wide) in paragraph at lines 9346--9346 [] \T1/pcr/m/n/10 rmap = list(year=entry.dt, age=(birth.d t-entry.dt)),[] [3737] Overfull \hbox (4.38043pt too wide) in paragraph at lines 9432--9432 []\T1/pcr/m/n/9 summary(fit1, times=1:10*182.5, scale=365) #expected survival by 1/2 years[] [3738] [3739] [3740] Underfull \hbox (badness 10000) in paragraph at lines 9652--9657 [][][]\T1/pcr/m/n/10 survfit.formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/ 10 survfit.coxph[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 survfit.object[][ ][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.survfit[][][][]\T1/ptm/m/n/10 , [3741] Overfull \hbox (12.78088pt too wide) in paragraph at lines 9672--9672 [] \T1/pcr/m/n/10 se.fit=TRUE, conf.int=.95, individual=FALSE, stype=2, ctype,[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 9673--9673 [] \T1/pcr/m/n/10 conf.type=c("log","log-log","plain","none", "logit", "arcsin"),[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 9678--9678 [] \T1/pcr/m/n/10 se.fit=FALSE, conf.int=.95, individual=FALSE, stype=2 , ctype,[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 9679--9679 [] \T1/pcr/m/n/10 conf.type=c("log","log-log","plain","none", "logit", "arcsin"),[] [3742] [3743] [3744] Overfull \hbox (12.78088pt too wide) in paragraph at lines 9901--9901 [] \T1/pcr/m/n/10 stype=1, ctype=1, id, cluster, robust, istate, timefi x=TRUE,[] [3745] Underfull \hbox (badness 4441) in paragraph at lines 10042--10052 []\T1/ptm/m/n/10 by de-fault, the surv-fit rou-tines only re-turn in-for-ma-tio n at the [3746] Underfull \hbox (badness 2653) in paragraph at lines 10054--10059 \T1/pcr/m/n/10 ctype=1[]\T1/ptm/m/n/10 , "fleming-harrington" which is equiv-a- lent to []\T1/pcr/m/n/10 stype=2, [3747] [3748] Overfull \hbox (4.38043pt too wide) in paragraph at lines 10242--10242 []\T1/pcr/m/n/9 # There are no interval censored subjects, only left-censored (status=3),[] [3749] [3750] [3751] [3752] [3753] Overfull \hbox (30.78088pt too wide) in paragraph at lines 10674--10674 []\T1/pcr/m/n/10 survfitcoxph.fit(y, x, wt, x2, risk, newrisk, strata, se.fit, survtype, [3754] Underfull \hbox (badness 1354) in paragraph at lines 10715--10719 []\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th e time range [3755] Overfull \hbox (60.78088pt too wide) in paragraph at lines 10761--10761 []\T1/pcr/m/n/10 survConcordance(formula, data, weights, subset, na.action) # use concordance [3756] [3757] Underfull \hbox (badness 2035) in paragraph at lines 10925--10932 \T1/ptm/m/n/10 it is as-sumed to name an el-e-ment from [][][]\T1/pcr/m/n/10 su rvreg.distributions[][][][]\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 10925--10932 \T1/ptm/m/n/10 These in-clude []\T1/pcr/m/n/10 "weibull"[]\T1/ptm/m/n/10 , []\T 1/pcr/m/n/10 "exponential"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "gaussian"[]\T1/p tm/m/n/10 , Underfull \hbox (badness 1297) in paragraph at lines 10925--10932 []\T1/pcr/m/n/10 "logistic"[]\T1/ptm/m/n/10 ,[]\T1/pcr/m/n/10 "lognormal" []\T1 /ptm/m/n/10 and []\T1/pcr/m/n/10 "loglogistic"[]\T1/ptm/m/n/10 . Oth-er-wise, i t is [3758] Overfull \hbox (20.58041pt too wide) in paragraph at lines 11015--11015 []\T1/pcr/m/n/9 # There are multiple ways to parameterize a Weibull distributi on. The survreg[] [3759] [3760] [3761] Overfull \hbox (31.3804pt too wide) in paragraph at lines 11172--11172 [] \T1/pcr/m/n/9 deviance= function(...) stop(\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 deviance residuals not defined\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )[] [3762] [3763] Overfull \hbox (4.38043pt too wide) in paragraph at lines 11304--11304 [] \T1/pcr/m/n/9 temp/pi, -2 *x*temp, 2*temp^2*(4*x ^2*temp -1))[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 11307--11307 [] \T1/pcr/m/n/9 deviance= function(...) stop(\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 deviance residuals not defined\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )[] [3764] [3765] Overfull \hbox (9.78043pt too wide) in paragraph at lines 11483--11483 []\T1/pcr/m/n/9 pfit2 <- pyears(Surv(years, death) ~ fgrp + agegrp, scale =100 0, data=test)[] [3766] [3767] [3768] [3769] Overfull \hbox (9.78043pt too wide) in paragraph at lines 11712--11712 []\T1/pcr/m/n/9 # The first data set contains data on 312 subjects in a clinic al trial plus[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 11713--11713 []\T1/pcr/m/n/9 # 106 that agreed to be followed off protocol, the second data set has data[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 11719--11719 [] \T1/pcr/m/n/9 protime = tdc(day, protime), alk.phos = tdc(day , alk.phos))[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 11721--11721 []\T1/pcr/m/n/9 fit <- coxph(Surv(tstart, tstop, endpt==2) ~ protime + log(bil i), data=pbc2)[] [3770] [3771] [3772] [3773] [3774] [3775] [3776] Overfull \hbox (12.78088pt too wide) in paragraph at lines 12162--12162 []\T1/pcr/m/n/10 levels, test = c("global", "trend", "pairwise"), predict = "l inear",[] [3777] [3778] [3779]) [3780] (./fullrefman.ind [3781] [3782] [3783] [3784] [3785] [3786] [3787] [3788] [3789] [3790] [3791] [3792] [3793] [3794] [3795] [3796] [3797] [3798] [3799] [3800] [3801] [3802] [3803] [3804] [3805] [3806] [3807] Overfull \hbox (19.3567pt too wide) in paragraph at lines 2878--2880 []| \T1/pcr/m/n/10 smooth.construct.ad.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 2880--2882 []| \T1/pcr/m/n/10 smooth.construct.bs.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 2882--2884 []| \T1/pcr/m/n/10 smooth.construct.cr.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 2884--2886 []| \T1/pcr/m/n/10 smooth.construct.ds.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 2886--2888 []| \T1/pcr/m/n/10 smooth.construct.fs.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 2888--2890 []| \T1/pcr/m/n/10 smooth.construct.gp.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (25.3567pt too wide) in paragraph at lines 2890--2892 []| \T1/pcr/m/n/10 smooth.construct.mrf.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 2892--2894 []| \T1/pcr/m/n/10 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smooth.construct.tp.smooth.spec\T1/ptm/m/n/10 , [3809] [3810] [3811] [3812] [3813] [3814] Overfull \hbox (19.3567pt too wide) in paragraph at lines 3532--3534 []| \T1/pcr/m/n/10 smooth.construct.ad.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 3534--3536 []| \T1/pcr/m/n/10 smooth.construct.bs.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 3536--3538 []| \T1/pcr/m/n/10 smooth.construct.cr.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 3538--3540 []| \T1/pcr/m/n/10 smooth.construct.ds.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 3540--3542 []| \T1/pcr/m/n/10 smooth.construct.fs.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 3542--3544 []| \T1/pcr/m/n/10 smooth.construct.gp.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (25.3567pt too wide) in paragraph at lines 3544--3546 []| \T1/pcr/m/n/10 smooth.construct.mrf.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 3546--3548 []| \T1/pcr/m/n/10 smooth.construct.ps.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 3548--3550 []| \T1/pcr/m/n/10 smooth.construct.re.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 3550--3552 []| \T1/pcr/m/n/10 smooth.construct.so.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (25.3567pt too wide) in paragraph at lines 3552--3554 []| \T1/pcr/m/n/10 smooth.construct.sos.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 3554--3556 []| \T1/pcr/m/n/10 smooth.construct.sz.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 3556--3558 []| \T1/pcr/m/n/10 smooth.construct.t2.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (43.3567pt too wide) in paragraph at lines 3558--3560 []| \T1/pcr/m/n/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 3560--3562 []| \T1/pcr/m/n/10 smooth.construct.tp.smooth.spec\T1/ptm/m/n/10 , [3815] Overfull \hbox (19.3567pt too wide) in paragraph at lines 3718--3720 []| \T1/pcr/m/n/10 smooth.construct.so.smooth.spec\T1/ptm/m/n/10 , [3816] [3817] [3818] [3819] [3820] [3821] [3822] [3823] [3824] [3825] Overfull \hbox (20.8567pt too wide) in paragraph at lines 4972--4974 []\T1/pcr/m/n/10 [,Matrix,index,index,logical-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 4974--4976 []\T1/pcr/m/n/10 [,Matrix,index,index,missing-method Overfull \hbox (32.8567pt too wide) in paragraph at lines 4976--4978 []\T1/pcr/m/n/10 [,Matrix,index,missing,logical-method Overfull \hbox (32.8567pt too wide) in paragraph at lines 4978--4980 []\T1/pcr/m/n/10 [,Matrix,index,missing,missing-method Overfull \hbox (44.8567pt too wide) in paragraph at lines 4980--4982 []\T1/pcr/m/n/10 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6293--6295 []\T1/pcr/m/n/10 Arith,dsparseVector,dsparseVector-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 6295--6297 []\T1/pcr/m/n/10 Arith,dtCMatrix,dtCMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 6301--6303 []\T1/pcr/m/n/10 Arith,lgCMatrix,lgCMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 6303--6305 []\T1/pcr/m/n/10 Arith,lgeMatrix,lgeMatrix-method [3835] Overfull \hbox (2.8567pt too wide) in paragraph at lines 6305--6307 []\T1/pcr/m/n/10 Arith,lgTMatrix,lgTMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 6311--6313 []\T1/pcr/m/n/10 Arith,logical,ddenseMatrix-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 6323--6325 []\T1/pcr/m/n/10 Arith,logical,dsparseMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 6331--6333 []\T1/pcr/m/n/10 Arith,lsparseMatrix,Matrix-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 6333--6335 []\T1/pcr/m/n/10 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\hbox (10.01662pt too wide) in paragraph at lines 7515--7517 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/ ptm/m/n/10 , [3842] [3843] Overfull \hbox (2.8567pt too wide) in paragraph at lines 7995--7997 []\T1/pcr/m/n/10 chol2inv,triangularMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 8038--8040 []\T1/pcr/m/n/10 Cholesky,triangularMatrix-method [3844] Overfull \hbox (10.01662pt too wide) in paragraph at lines 8045--8047 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/ ptm/m/n/10 , [3845] [3846] Overfull \hbox (26.8567pt too wide) in paragraph at lines 8556--8558 []\T1/pcr/m/n/10 coerce,BunchKaufman,dtrMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 8558--8560 []\T1/pcr/m/n/10 coerce,CHMsimpl,dtCMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 8560--8562 []\T1/pcr/m/n/10 coerce,CHMsuper,dgCMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at 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coerce,factor,sparseMatrix-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 8598--8600 []\T1/pcr/m/n/10 coerce,generalMatrix,packedMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 8600--8602 []\T1/pcr/m/n/10 coerce,graph,CsparseMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 8604--8606 []\T1/pcr/m/n/10 coerce,graph,RsparseMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 8606--8608 []\T1/pcr/m/n/10 coerce,graph,sparseMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 8608--8610 []\T1/pcr/m/n/10 coerce,graph,TsparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 8610--8612 []\T1/pcr/m/n/10 coerce,graphAM,TsparseMatrix-method Overfull \hbox (26.8567pt too wide) in paragraph at lines 8612--8614 []\T1/pcr/m/n/10 coerce,graphNEL,TsparseMatrix-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 8628--8630 []\T1/pcr/m/n/10 coerce,Matrix,CsparseMatrix-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 8630--8632 []\T1/pcr/m/n/10 coerce,matrix,CsparseMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 8632--8634 []\T1/pcr/m/n/10 coerce,Matrix,ddenseMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 8634--8636 []\T1/pcr/m/n/10 coerce,matrix,ddenseMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 8636--8638 []\T1/pcr/m/n/10 coerce,Matrix,denseMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 8638--8640 []\T1/pcr/m/n/10 coerce,matrix,denseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 8642--8644 []\T1/pcr/m/n/10 coerce,Matrix,diagonalMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 8644--8646 []\T1/pcr/m/n/10 coerce,matrix,diagonalMatrix-method [3848] Overfull \hbox (14.8567pt too wide) in paragraph at lines 8658--8660 []\T1/pcr/m/n/10 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coerce,sparseVector,CsparseMatrix-method Overfull \hbox (38.8567pt too wide) in paragraph at lines 8808--8810 []\T1/pcr/m/n/10 coerce,sparseVector,denseMatrix-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 8810--8812 []\T1/pcr/m/n/10 coerce,sparseVector,dsparseVector-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 8812--8814 []\T1/pcr/m/n/10 coerce,sparseVector,generalMatrix-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 8814--8816 []\T1/pcr/m/n/10 coerce,sparseVector,isparseVector-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 8816--8818 []\T1/pcr/m/n/10 coerce,sparseVector,lsparseVector-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 8818--8820 []\T1/pcr/m/n/10 coerce,sparseVector,Matrix-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 8820--8822 []\T1/pcr/m/n/10 coerce,sparseVector,nsparseVector-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 8822--8824 []\T1/pcr/m/n/10 coerce,sparseVector,RsparseMatrix-method Overfull \hbox (44.8567pt too wide) in paragraph at lines 8824--8826 []\T1/pcr/m/n/10 coerce,sparseVector,sparseMatrix-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 8826--8828 []\T1/pcr/m/n/10 coerce,sparseVector,TsparseMatrix-method Overfull \hbox (56.8567pt too wide) in paragraph at lines 8828--8830 []\T1/pcr/m/n/10 coerce,sparseVector,unpackedMatrix-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 8830--8832 []\T1/pcr/m/n/10 coerce,sparseVector,zsparseVector-method Overfull \hbox (26.8567pt too wide) in paragraph at lines 8832--8834 []\T1/pcr/m/n/10 coerce,TsparseMatrix,graphNEL-method [3850] Overfull \hbox (14.8567pt too wide) in paragraph at lines 8834--8836 []\T1/pcr/m/n/10 coerce,vector,CsparseMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 8836--8838 []\T1/pcr/m/n/10 coerce,vector,ddenseMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 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coerce,vector,ndenseMatrix-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 8864--8866 []\T1/pcr/m/n/10 coerce,vector,nsparseMatrix-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 8866--8868 []\T1/pcr/m/n/10 coerce,vector,nsparseVector-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 8868--8870 []\T1/pcr/m/n/10 coerce,vector,RsparseMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 8870--8872 []\T1/pcr/m/n/10 coerce,vector,sparseMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 8872--8874 []\T1/pcr/m/n/10 coerce,vector,sparseVector-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 8874--8876 []\T1/pcr/m/n/10 coerce,vector,TsparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 8876--8878 []\T1/pcr/m/n/10 coerce,vector,unpackedMatrix-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 8878--8880 []\T1/pcr/m/n/10 coerce,vector,zsparseVector-method [3851] Overfull \hbox (62.8567pt too wide) in paragraph at lines 9004--9006 []\T1/pcr/m/n/10 Compare,CsparseMatrix,CsparseMatrix-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 9010--9012 []\T1/pcr/m/n/10 Compare,lgeMatrix,lgeMatrix-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 9022--9024 []\T1/pcr/m/n/10 Compare,ngeMatrix,ngeMatrix-method Overfull \hbox (86.8567pt too wide) in paragraph at lines 9036--9038 []\T1/pcr/m/n/10 Compare,triangularMatrix,diagonalMatrix-method [3852] [3853] [3854] Overfull \hbox (8.8567pt too wide) in paragraph at lines 9586--9588 []\T1/pcr/m/n/10 crossprod,ANY,sparseVector-method Overfull \hbox (74.8567pt too wide) in paragraph at lines 9588--9590 []\T1/pcr/m/n/10 crossprod,CsparseMatrix,CsparseMatrix-method Overfull \hbox (62.8567pt too wide) in paragraph at lines 9590--9592 []\T1/pcr/m/n/10 crossprod,CsparseMatrix,denseMatrix-method Overfull \hbox (80.8567pt too wide) in paragraph at lines 9592--9594 []\T1/pcr/m/n/10 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10650--10652 []\T1/pcr/m/n/10 dimnames<-,symmetricMatrix,list-method Overfull \hbox (38.8567pt too wide) in paragraph at lines 10652--10654 []\T1/pcr/m/n/10 dimnames<-,symmetricMatrix,NULL-method [3860] [3861] Overfull \hbox (46.01662pt too wide) in paragraph at lines 11004--11006 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.ds.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3862] [3863] [3864] [3865] [3866] Overfull \hbox (80.8567pt too wide) in paragraph at lines 11990--11992 []\T1/pcr/m/n/10 forceSymmetric,CsparseMatrix,character-method Overfull \hbox (68.8567pt too wide) in paragraph at lines 11992--11994 []\T1/pcr/m/n/10 forceSymmetric,CsparseMatrix,missing-method Overfull \hbox (68.8567pt too wide) in paragraph at lines 11994--11996 []\T1/pcr/m/n/10 forceSymmetric,denseMatrix,character-method Overfull \hbox (56.8567pt too wide) in paragraph at lines 11996--11998 []\T1/pcr/m/n/10 forceSymmetric,denseMatrix,missing-method Overfull \hbox (86.8567pt too wide) in paragraph at lines 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Logic,dMatrix,sparseVector-method Overfull \hbox (44.8567pt too wide) in paragraph at lines 15491--15493 []\T1/pcr/m/n/10 Logic,ldenseMatrix,lsparseMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 15493--15495 []\T1/pcr/m/n/10 Logic,lgCMatrix,lgCMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 15495--15497 []\T1/pcr/m/n/10 Logic,lgeMatrix,lgeMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 15497--15499 []\T1/pcr/m/n/10 Logic,lgTMatrix,lgTMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 15503--15505 []\T1/pcr/m/n/10 Logic,lMatrix,sparseVector-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 15511--15513 []\T1/pcr/m/n/10 Logic,lsCMatrix,lsCMatrix-method Overfull \hbox (44.8567pt too wide) in paragraph at lines 15513--15515 []\T1/pcr/m/n/10 Logic,lsparseMatrix,ldenseMatrix-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 15515--15517 []\T1/pcr/m/n/10 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Logic,sparseVector,sparseVector-method Overfull \hbox (74.8567pt too wide) in paragraph at lines 15551--15553 []\T1/pcr/m/n/10 Logic,triangularMatrix,diagonalMatrix-method [3884] [3885] Overfull \hbox (10.01662pt too wide) in paragraph at lines 15861--15863 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/ ptm/m/n/10 , [3886] [3887] [3888] Overfull \hbox (52.01662pt too wide) in paragraph at lines 16644--16646 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.mrf.smooth.spec\T1/ptm/m/it/1 0 )\T1/ptm/m/n/10 , [3889] [3890] [3891] Overfull \hbox (8.8567pt too wide) in paragraph at lines 17255--17257 []\T1/pcr/m/n/10 nonstandardGenericWithTrace-class Overfull \hbox (8.8567pt too wide) in paragraph at lines 17276--17278 []\T1/pcr/m/n/10 norm,denseMatrix,character-method Overfull \hbox (26.8567pt too wide) in paragraph at lines 17278--17280 []\T1/pcr/m/n/10 norm,diagonalMatrix,character-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 17284--17286 []\T1/pcr/m/n/10 norm,sparseMatrix,character-method [3892] Overfull \hbox (8.8567pt too wide) in paragraph at lines 17583--17585 []\T1/pcr/m/n/10 Ops,ddiMatrix,sparseMatrix-method Overfull \hbox (62.8567pt too wide) in paragraph at lines 17585--17587 []\T1/pcr/m/n/10 Ops,diagonalMatrix,triangularMatrix-method [3893] Overfull \hbox (38.8567pt too wide) in paragraph at lines 17605--17607 []\T1/pcr/m/n/10 Ops,dsparseMatrix,nsparseMatrix-method Overfull \hbox (26.8567pt too wide) in paragraph at lines 17607--17609 []\T1/pcr/m/n/10 Ops,ldenseMatrix,ldenseMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 17625--17627 []\T1/pcr/m/n/10 Ops,ldiMatrix,sparseMatrix-method Overfull \hbox (38.8567pt too wide) in paragraph at lines 17639--17641 []\T1/pcr/m/n/10 Ops,lsparseMatrix,lsparseMatrix-method Overfull \hbox (38.8567pt too wide) in paragraph at lines 17641--17643 []\T1/pcr/m/n/10 Ops,lsparseMatrix,nsparseMatrix-method Overfull \hbox (26.8567pt too wide) in paragraph at lines 17659--17661 []\T1/pcr/m/n/10 Ops,ndenseMatrix,ndenseMatrix-method Overfull \hbox (26.8567pt too wide) in paragraph at lines 17675--17677 []\T1/pcr/m/n/10 Ops,nonStructure,nonStructure-method Overfull \hbox (38.8567pt too wide) in paragraph at lines 17679--17681 []\T1/pcr/m/n/10 Ops,nsparseMatrix,dsparseMatrix-method Overfull \hbox (38.8567pt too wide) in paragraph at lines 17681--17683 []\T1/pcr/m/n/10 Ops,nsparseMatrix,lsparseMatrix-method Overfull \hbox (32.8567pt too wide) in paragraph at lines 17683--17685 []\T1/pcr/m/n/10 Ops,nsparseMatrix,sparseMatrix-method [3894] Overfull \hbox (8.8567pt too wide) in paragraph at lines 17697--17699 []\T1/pcr/m/n/10 Ops,sparseMatrix,ddiMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 17699--17701 []\T1/pcr/m/n/10 Ops,sparseMatrix,ldiMatrix-method Overfull \hbox (32.8567pt too wide) in paragraph at lines 17701--17703 []\T1/pcr/m/n/10 Ops,sparseMatrix,nsparseMatrix-method Overfull \hbox (26.8567pt too wide) in paragraph at lines 17705--17707 []\T1/pcr/m/n/10 Ops,sparseMatrix,sparseMatrix-method Overfull \hbox (26.8567pt too wide) in paragraph at lines 17713--17715 []\T1/pcr/m/n/10 Ops,sparseVector,sparseVector-method Overfull \hbox (46.01662pt too wide) in paragraph at lines 17927--17929 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3895] Overfull \hbox (77.3567pt too wide) in paragraph at lines 17962--17964 []\T1/pcr/m/n/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , [3896] [3897] [3898] [3899] [3900] [3901] Overfull \hbox (46.01662pt too wide) in paragraph at lines 19319--19321 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (4.01662pt too wide) in paragraph at lines 19322--19324 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 Predict.matrix.cr.smooth\T1/ptm/m/it/10 )\T1/p tm/m/n/10 , Overfull \hbox (4.01662pt too wide) in paragraph at lines 19324--19326 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 Predict.matrix.cr.smooth\T1/ptm/m/it/10 )\T1/p tm/m/n/10 , Overfull \hbox (46.01662pt too wide) in paragraph at lines 19326--19328 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.ds.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (46.01662pt too wide) in paragraph at lines 19328--19330 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.fs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (46.01662pt too wide) in paragraph at lines 19330--19332 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.gp.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (52.01662pt too wide) in paragraph at lines 19332--19334 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.mrf.smooth.spec\T1/ptm/m/it/1 0 )\T1/ptm/m/n/10 , Overfull \hbox (4.01662pt too wide) in paragraph at lines 19334--19336 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 Predict.matrix.cr.smooth\T1/ptm/m/it/10 )\T1/p tm/m/n/10 , Overfull \hbox (46.01662pt too wide) in paragraph at lines 19336--19338 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.re.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (4.01662pt too wide) in paragraph at lines 19338--19340 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 Predict.matrix.soap.film\T1/ptm/m/it/10 )\T1/p tm/m/n/10 , Overfull \hbox (52.01662pt too wide) in paragraph at lines 19342--19344 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.sos.smooth.spec\T1/ptm/m/it/1 0 )\T1/ptm/m/n/10 , Overfull \hbox (4.01662pt too wide) in paragraph at lines 19344--19346 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 Predict.matrix.soap.film\T1/ptm/m/it/10 )\T1/p tm/m/n/10 , Overfull \hbox (46.01662pt too wide) in paragraph at lines 19346--19348 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.sz.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (4.01662pt too wide) in paragraph at lines 19348--19350 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 Predict.matrix.cr.smooth\T1/ptm/m/it/10 )\T1/p tm/m/n/10 , Overfull \hbox (4.01662pt too wide) in paragraph at lines 19350--19352 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 Predict.matrix.cr.smooth\T1/ptm/m/it/10 )\T1/p tm/m/n/10 , Overfull \hbox (4.01662pt too wide) in paragraph at lines 19352--19354 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 Predict.matrix.cr.smooth\T1/ptm/m/it/10 )\T1/p tm/m/n/10 , Overfull \hbox (4.01662pt too wide) in paragraph at lines 19354--19356 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 Predict.matrix.cr.smooth\T1/ptm/m/it/10 )\T1/p tm/m/n/10 , [3902] [3903] Overfull \hbox (4.01662pt too wide) in paragraph at lines 19708--19710 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 getDLLRegisteredRoutines\T1/ptm/m/it/10 )\T1/p tm/m/n/10 , Overfull \hbox (4.01662pt too wide) in paragraph at lines 19782--19784 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 getDLLRegisteredRoutines\T1/ptm/m/it/10 )\T1/p tm/m/n/10 , [3904] [3905] [3906] Overfull \hbox (10.01662pt too wide) in paragraph at lines 20249--20251 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/ ptm/m/n/10 , Overfull \hbox (8.8567pt too wide) in paragraph at lines 20255--20257 []\T1/pcr/m/n/10 qr.coef,sparseQR,dgeMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 20265--20267 []\T1/pcr/m/n/10 qr.fitted,sparseQR,dgeMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 20267--20269 []\T1/pcr/m/n/10 qr.fitted,sparseQR,Matrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 20269--20271 []\T1/pcr/m/n/10 qr.fitted,sparseQR,matrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 20271--20273 []\T1/pcr/m/n/10 qr.fitted,sparseQR,vector-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 20283--20285 []\T1/pcr/m/n/10 qr.qty,sparseQR,dgeMatrix-method [3907] Overfull \hbox (14.8567pt too wide) in paragraph at lines 20308--20310 []\T1/pcr/m/n/10 qr.resid,sparseQR,dgeMatrix-method Overfull \hbox (62.8567pt too wide) in paragraph at lines 20444--20446 []\T1/pcr/m/n/10 R_AVAILABLE_PACKAGES_CACHE_CONTROL_MAX_AGE [3908] [3909] Overfull \hbox (14.8567pt too wide) in paragraph at lines 20728--20730 []\T1/pcr/m/n/10 rcond,denseMatrix,character-method Overfull \hbox (32.8567pt too wide) in paragraph at lines 20730--20732 []\T1/pcr/m/n/10 rcond,diagonalMatrix,character-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 20732--20734 []\T1/pcr/m/n/10 rcond,indMatrix,character-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 20736--20738 []\T1/pcr/m/n/10 rcond,sparseMatrix,character-method [3910] [3911] [3912] [3913] [3914] Overfull \hbox (10.01662pt too wide) in paragraph at lines 21756--21758 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/ ptm/m/n/10 , [3915] Overfull \hbox (32.8567pt too wide) in paragraph at lines 22122--22124 []\T1/pcr/m/n/10 show,BunchKaufmanFactorization-method Overfull \hbox (10.01662pt too wide) in paragraph at lines 22122--22124 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/ ptm/m/n/10 , Overfull \hbox (8.8567pt too wide) in paragraph at lines 22124--22126 []\T1/pcr/m/n/10 show,CholeskyFactorization-method Overfull \hbox (10.01662pt too wide) in paragraph at lines 22124--22126 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/ ptm/m/n/10 , [3916] Overfull \hbox (26.8567pt too wide) in paragraph at lines 22138--22140 []\T1/pcr/m/n/10 show,genericFunctionWithTrace-method Overfull \hbox (10.01662pt too wide) in paragraph at lines 22140--22142 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/ ptm/m/n/10 , Overfull \hbox (10.01662pt too wide) in paragraph at lines 22142--22144 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/ ptm/m/n/10 , Overfull \hbox (32.8567pt too wide) in paragraph at lines 22146--22148 []\T1/pcr/m/n/10 show,MethodDefinitionWithTrace-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 22150--22152 []\T1/pcr/m/n/10 show,MethodWithNextWithTrace-method Overfull \hbox (10.01662pt too wide) in paragraph at lines 22156--22158 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/ ptm/m/n/10 , Overfull \hbox (14.8567pt too wide) in paragraph at lines 22158--22160 []\T1/pcr/m/n/10 show,refClassRepresentation-method Overfull \hbox (10.01662pt too wide) in paragraph at lines 22164--22166 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/ ptm/m/n/10 , [3917] Overfull \hbox (46.01662pt too wide) in paragraph at lines 22405--22407 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (46.01662pt too wide) in paragraph at lines 22407--22409 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (46.01662pt too wide) in paragraph at lines 22410--22412 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (5.3567pt too wide) in paragraph at lines 22418--22419 []\T1/pcr/m/n/10 smooth.construct.mrf.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (46.01662pt too wide) in paragraph at lines 22427--22429 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.so.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (5.3567pt too wide) in paragraph at lines 22431--22432 []\T1/pcr/m/n/10 smooth.construct.sos.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (46.01662pt too wide) in paragraph at lines 22432--22434 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.so.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3918] Overfull \hbox (23.3567pt too wide) in paragraph at lines 22439--22443 []\T1/pcr/m/n/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (46.01662pt too wide) in paragraph at lines 22444--22446 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.tp.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (46.01662pt too wide) in paragraph at lines 22497--22499 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.so.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (20.8567pt too wide) in paragraph at lines 22532--22534 []\T1/pcr/m/n/10 solve,BunchKaufman,dgeMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 22534--22536 []\T1/pcr/m/n/10 solve,BunchKaufman,missing-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 22536--22538 []\T1/pcr/m/n/10 solve,CHMfactor,dgCMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 22538--22540 []\T1/pcr/m/n/10 solve,CHMfactor,dgeMatrix-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 22562--22564 []\T1/pcr/m/n/10 solve,dgCMatrix,denseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 22568--22570 []\T1/pcr/m/n/10 solve,dgCMatrix,sparseMatrix-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 22580--22582 []\T1/pcr/m/n/10 solve,dsCMatrix,denseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 22586--22588 []\T1/pcr/m/n/10 solve,dsCMatrix,sparseMatrix-method [3919] Overfull \hbox (2.8567pt too wide) in paragraph at lines 22594--22596 []\T1/pcr/m/n/10 solve,dtCMatrix,dgCMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 22596--22598 []\T1/pcr/m/n/10 solve,dtCMatrix,dgeMatrix-method Overfull \hbox (44.8567pt too wide) in paragraph at lines 22600--22602 []\T1/pcr/m/n/10 solve,dtCMatrix,triangularMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 22602--22604 []\T1/pcr/m/n/10 solve,dtpMatrix,dgeMatrix-method Overfull \hbox (44.8567pt too wide) in paragraph at lines 22606--22608 []\T1/pcr/m/n/10 solve,dtpMatrix,triangularMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 22608--22610 []\T1/pcr/m/n/10 solve,dtrMatrix,dgeMatrix-method Overfull \hbox (44.8567pt too wide) in paragraph at lines 22612--22614 []\T1/pcr/m/n/10 solve,dtrMatrix,triangularMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 22618--22620 []\T1/pcr/m/n/10 solve,Matrix,sparseVector-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 22620--22622 []\T1/pcr/m/n/10 solve,matrix,sparseVector-method Overfull \hbox (86.8567pt too wide) in paragraph at lines 22622--22624 []\T1/pcr/m/n/10 solve,MatrixFactorization,CsparseMatrix-method Overfull \hbox (74.8567pt too wide) in paragraph at lines 22624--22626 []\T1/pcr/m/n/10 solve,MatrixFactorization,denseMatrix-method Overfull \hbox (62.8567pt too wide) in paragraph at lines 22626--22628 []\T1/pcr/m/n/10 solve,MatrixFactorization,dgCMatrix-method Overfull \hbox (62.8567pt too wide) in paragraph at lines 22628--22630 []\T1/pcr/m/n/10 solve,MatrixFactorization,dgeMatrix-method Overfull \hbox (92.8567pt too wide) in paragraph at lines 22630--22632 []\T1/pcr/m/n/10 solve,MatrixFactorization,diagonalMatrix-method Overfull \hbox (62.8567pt too wide) in paragraph at lines 22632--22634 []\T1/pcr/m/n/10 solve,MatrixFactorization,indMatrix-method Overfull \hbox (44.8567pt too 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[3] [4] Underfull \hbox (badness 6741) in paragraph at lines 143--149 []\T1/ptm/m/n/10 the small-est pos-i-tive floating-point num-ber []\T1/pcr/m/n/ 10 x []\T1/ptm/m/n/10 such that []\T1/pcr/m/n/10 1 + x != 1[]\T1/ptm/m/n/10 . Underfull \hbox (badness 4805) in paragraph at lines 143--149 \T1/ptm/m/n/10 It equals []\T1/pcr/m/n/10 double.base ^ ulp.digits []\T1/ptm/m/ n/10 if ei-ther []\T1/pcr/m/n/10 double.base []\T1/ptm/m/n/10 is Underfull \hbox (badness 4316) in paragraph at lines 143--149 \T1/ptm/m/n/10 2 or []\T1/pcr/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0; oth -er-wise, it is []\T1/pcr/m/n/10 (double.base ^ Underfull \hbox (badness 4454) in paragraph at lines 149--157 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/pcr/m/n/10 x [ ]\T1/ptm/m/n/10 such that []\T1/pcr/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It Underfull \hbox (badness 1028) in paragraph at lines 149--157 \T1/ptm/m/n/10 equals []\T1/pcr/m/n/10 double.base ^ double.neg.ulp.digits []\T 1/ptm/m/n/10 if []\T1/pcr/m/n/10 double.base Underfull \hbox (badness 2980) in paragraph at lines 149--157 []\T1/ptm/m/n/10 is 2 or []\T1/pcr/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0 ; oth-er-wise, it is []\T1/pcr/m/n/10 (double.base Underfull \hbox (badness 1394) in paragraph at lines 149--157 \T1/pcr/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/p cr/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As [5] Underfull \hbox (badness 1142) in paragraph at lines 219--224 []\T1/ptm/m/n/10 the num-ber of \T1/ptm/m/it/10 bytes \T1/ptm/m/n/10 in the C [ ]\T1/pcr/m/n/10 time_t []\T1/ptm/m/n/10 type: a 64-bit []\T1/pcr/m/n/10 time_t []\T1/ptm/m/n/10 (value Underfull \hbox (badness 1478) in paragraph at lines 219--224 []\T1/pcr/m/n/10 8[]\T1/ptm/m/n/10 ) is much pre-ferred these days. Note that t his is the type used by Underfull \hbox (badness 1484) in paragraph at lines 226--231 []\T1/ptm/m/n/10 introduced in \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.0.0. When [][] []\T1/pcr/m/n/10 capabilities[][][]("long.double") []\T1/ptm/m/n/10 is Underfull \hbox (badness 3009) in paragraph at lines 235--247 []\T1/pcr/m/n/10 *.exponent[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 *.min.exp[]\T1/p tm/m/n/10 , and []\T1/pcr/m/n/10 *.max.exp[]\T1/ptm/m/n/10 , com-puted en-tirel y anal-o-gously to their [6] Underfull \hbox (badness 5652) in paragraph at lines 255--260 []\T1/ptm/m/n/10 Note that it is le-gal for a plat-form to have a `[]\T1/pcr/m/ n/10 long double[]\T1/ptm/m/n/10 ' C type which is Underfull \hbox (badness 6691) in paragraph at lines 255--260 \T1/ptm/m/n/10 iden-ti-cal to the `[]\T1/pcr/m/n/10 double[]\T1/ptm/m/n/10 ' ty pe --- this hap-pens on ARM CPUs. In that case Underfull \hbox (badness 1521) in paragraph at lines 255--260 [][][]\T1/pcr/m/n/10 capabilities[][][]("long.double") []\T1/ptm/m/n/10 will be false but on ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 prior to 4.0.4, [7] Underfull \hbox (badness 10000) in paragraph at lines 375--379 [][][]\T1/pcr/m/n/10 R.version[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 Sys.info[][][] []\T1/ptm/m/n/10 give more de-tails about the OS. In par-tic-u-l ar, [8] [9] [10] Underfull \hbox (badness 1072) in paragraph at lines 572--578 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/pcr/m/n/10 insertions[]\T1/ptm/m/n/10 ', [11] Overfull \hbox (4.38043pt too wide) in paragraph at lines 641--641 []\T1/pcr/m/n/9 agrep("laysy", c("1 lazy", "1", "1 LAZY"), max.distance = 2, v alue = TRUE)[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 642--642 []\T1/pcr/m/n/9 agrep("laysy", c("1 lazy", "1", "1 LAZY"), max.distance = 2, i gnore.case = TRUE)[] [12] [13] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Overfull \hbox (60.78088pt too wide) in paragraph at lines 773--773 [] \T1/pcr/m/n/10 ..., check.attributes = TRUE, check.class = TRUE, g iveErr = FALSE)[] [14] [15] Overfull \hbox (4.38043pt too wide) in paragraph at lines 927--927 []\T1/pcr/m/n/9 all.equal(tan(d45), one, tolerance = 0, scale = 1+(-2:2)/1e9) # "absolute"[] [16] Overfull \hbox (4.38043pt too wide) in paragraph at lines 948--948 []\T1/pcr/m/n/9 mtext(paste("mean(all.equal(x1, x2*(1 + eps_k))) {100 x} Mean rel.diff.=",[] Overfull \hbox (69.18036pt too wide) in paragraph at lines 976--976 []\T1/pcr/m/n/9 all.equal(two^20, 2^20, check.attributes = FALSE)# "target is bar, current is numeric"[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 977--977 []\T1/pcr/m/n/9 all.equal(two^20, 2^20, check.attributes = FALSE, check.class = FALSE) # TRUE[] Underfull \vbox (badness 10000) has occurred while \output is active [17] Overfull \hbox (0.78088pt too wide) in paragraph at lines 1002--1002 []\T1/pcr/m/n/10 all.names(expr, functions = TRUE, max.names = -1L, unique = F ALSE) [18] [19] [20] [21] [22] [23] [24] (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [25] Underfull \hbox (badness 1221) in paragraph at lines 1535--1541 []\T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion, where \T1/phv/m/n/10 R \T1/p tm/m/n/10 uses ``floored'' in-te-ger di-vi-sion, i.e., []\T1/pcr/m/n/10 q <- x %/% y := [26] Underfull \hbox (badness 10000) in paragraph at lines 1623--1631 \T1/ptm/m/n/10 Also avail-able at [][]$\T1/pcr/m/n/10 https : / / docs . oracle . com / cd / E19957-[]01 / 806-[]3568 / ncg _ [27] [28] [29] [30] Underfull \vbox (badness 10000) has occurred while \output is active [31] Overfull \hbox (72.78088pt too wide) in paragraph at lines 1966--1966 [] \T1/pcr/m/n/10 cut.names = FALSE, col.names = names(x), fix.em pty.names = TRUE,[] Underfull \hbox (badness 1303) in paragraph at lines 1998--2001 []\T1/ptm/m/n/10 logical or in-te-ger; in-di-cat-ing if col-umn names with more than 256 (or [32] [33] Overfull \hbox (31.3804pt too wide) in paragraph at lines 2089--2089 []\T1/pcr/m/n/9 names(dL <- as.data.frame(L)) # "NA."[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 2090--2090 []\T1/pcr/m/n/9 names(dL1 <- as.data.frame(L, col.names = names(L))) # "NA."[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 2092--2092 []\T1/pcr/m/n/9 names(dL1.<- as.data.frame(L, check.name s=FALSE)) # "NA"[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 2094--2094 []\T1/pcr/m/n/9 names(dL2 <- as.data.frame(L, col.names = names(L), check.name s=FALSE)) # NA[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 2095--2095 []\T1/pcr/m/n/9 names(dLn <- as.data.frame(L, new.names = TRUE, check.name s=FALSE)) # NA[] [34] [35] [36] Overfull \hbox (112.38031pt too wide) in paragraph at lines 2285--2285 []\T1/pcr/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] Underfull \hbox (badness 10000) in paragraph at lines 2323--2325 []\T1/ptm/m/n/10 If [][][]\T1/pcr/m/n/10 is.object[][][](x) []\T1/ptm/m/n/10 is true and it has a [][][]\T1/pcr/m/n/10 class[][][] []\T1/ptm/m/n/10 for which an [37] [38] [39] [40] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2599--2599 []\T1/pcr/m/n/9 (now <- as.POSIXlt(Sys.time())) # the current datetime, as cla ss "POSIXlt"[] [41] Overfull \hbox (121.828pt too wide) in paragraph at lines 2639--2639 []\T1/pcr/m/n/9 if(file.exists(tab)) { # typically on Windows; on Linux when \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 configure --with-internal-tzcode\TS1/cmtt/m/n/9 `[] [42] [43] Underfull \hbox (badness 1107) in paragraph at lines 2807--2809 []\T1/ptm/m/n/10 There are no re-stric-tions on the name given as []\T1/pcr/m/n /10 x[]\T1/ptm/m/n/10 : it can be a non-syntactic name (see [44] [45] [46] Overfull \hbox (42.78088pt too wide) in paragraph at lines 2974--2974 []\T1/pcr/m/n/10 attach(what, pos = 2L, name = deparse1(substitute(what), back tick=FALSE), [47] [48] [49] [50] [51] [52] Underfull \hbox (badness 10000) in paragraph at lines 3443--3446 []\T1/pcr/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[] [][] ver-sion of []\T1/pcr/m/n/10 balancePOSIXlt(x, [53] [54] [55] [56] Overfull \hbox (31.3804pt too wide) in paragraph at lines 3749--3749 []\T1/pcr/m/n/9 legend("topright", legend = paste("nu=", nus), col = nus + 2, lwd = 1, bty="n")[] [57] Overfull \hbox (9.78043pt too wide) in paragraph at lines 3780--3780 []\T1/pcr/m/n/9 plot(range(x0), c(1e-40, 1), log = "xy", xlab = "x", ylab = "" , type = "n",[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 3781--3781 [] \T1/pcr/m/n/9 main = "Bessel Functions J_nu(x) near 0\n log - log sc ale") ; axis(2, at=1)[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3788--3788 []\T1/pcr/m/n/9 plot(range(x0), 10^c(-100, 80), log = "xy", xlab = "x", ylab = "", type = "n",[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 3789--3789 [] \T1/pcr/m/n/9 main = "Bessel Functions K_nu(x) near 0\n log - log sc ale") ; axis(2, at=1)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 3792--3792 []\T1/pcr/m/n/9 legend("topright", legend = paste("nu=", paste(nus, nus + 0.5, sep = ", ")),[] Underfull \vbox (badness 10000) has occurred while \output is active [58] [59] [60] [61] [62] [63] [64] Underfull \hbox (badness 10000) in paragraph at lines 4239--4241 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [65] [66] [67] [68] [69] [70] [71] Overfull \hbox (9.78043pt too wide) in paragraph at lines 4721--4721 []\T1/pcr/m/n/9 L <- as.list(E <- setNames( , c("if", "for", "while", "repeat" , "function",[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 4722--4722 [] \T1/pcr/m/n/9 "(", "{", "[", "<-", "<<-", "->", "=")))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 4723--4723 []\T1/pcr/m/n/9 for(i in seq_along(L)) L[[i]] <- call(E[[i]]) # instead of lap ply(E, call) ..[] Overfull \hbox (73.22806pt too wide) in paragraph at lines 4724--4724 []\T1/pcr/m/n/9 list_ <- function (...) \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 names<- \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 (list(...), vapply(sys.call()[-1L], as.character , ""))[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 4725--4725 []\T1/pcr/m/n/9 (Tab <- noquote(sapply(list_(is.call, typeof, class, mode), \( F) sapply(L, F))))[] [72] Underfull \hbox (badness 4927) in paragraph at lines 4793--4797 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the name of a C func-tion, or an ob-ject Underfull \hbox (badness 2012) in paragraph at lines 4793--4797 \T1/ptm/m/n/10 of class []\T1/pcr/m/n/10 "[][]NativeSymbolInfo[][][]"[]\T1/ptm/ m/n/10 , []\T1/pcr/m/n/10 "[][]RegisteredNativeSymbol[][][]" []\T1/ptm/m/n/10 o r [73] Overfull \hbox (0.78088pt too wide) in paragraph at lines 4877--4877 [] \T1/pcr/m/n/10 Xchk = any(nas %in% c("X11", "jpeg", "png", "tif f")))[] [74] Underfull \hbox (badness 4595) in paragraph at lines 4951--4954 []\T1/ptm/m/n/10 is ICU avail-able for col-la-tion? See the help on [][]Com-par -i-son[][][] and [75] [76] [77] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5114--5114 []\T1/pcr/m/n/9 cat(paste(letters, 100* 1:26), fill = TRUE, labels = paste0("{ ", 1:10, "}:"))[] Underfull \hbox (badness 1199) in paragraph at lines 5143--5149 []\T1/ptm/m/n/10 (generalized) vec-tors or ma-tri-ces. These can be given as na med ar-gu- Underfull \hbox (badness 2573) in paragraph at lines 5155--5158 []\T1/ptm/m/n/10 (only for data frame method:) log-i-cal in-di-cat-ing if uniqu e and valid [78] [79] [80] Overfull \hbox (9.78043pt too wide) in paragraph at lines 5326--5326 []\T1/pcr/m/n/9 rbind(1:4, c = 2, "a++" = 10, dd, deparse.level = 1) # 3 rowna mes (default)[] [81] [82] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5499--5499 []\T1/pcr/m/n/9 as.character(list(A = "Abc", xy = c("x", "y"))) # "Abc" "c(\" x\", \"y\")"[] [83] Underfull \hbox (badness 2521) in paragraph at lines 5587--5589 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [84] [85] [86] [87] [88] [89] [90] [91] Underfull \hbox (badness 1270) in paragraph at lines 6075--6083 []\T1/ptm/m/n/10 When a generic func-tion []\T1/pcr/m/n/10 fun []\T1/ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute []\T1/pcr/m/n/10 c("first", [92] [93] [94] [95] [96] [97] [98] [99] Underfull \hbox (badness 1796) in paragraph at lines 6652--6660 []\T1/ptm/m/n/10 Collation of char-ac-ter strings is a com-plex topic. For an i n-tro-duc-tion see [][]$\T1/pcr/m/n/10 https : / / [100] [101] [102] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6858--6858 []\T1/pcr/m/n/9 NAs <- vapply(list(NA, NA_integer_, NA_real_, NA_character_, N A_complex_),[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 6868--6868 []\T1/pcr/m/n/9 ## The exact result of this *depends* on the platform, compile r, math-library:[] Overfull \hbox (90.78033pt too wide) in paragraph at lines 6870--6870 []\T1/pcr/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [103] [104] Underfull \hbox (badness 1635) in paragraph at lines 7073--7076 []\T1/ptm/m/n/10 User in-ter-rupts sig-nal a con-di-tion of class []\T1/pcr/m/n /10 interrupt []\T1/ptm/m/n/10 that in-her-its di-rectly from class [105] Underfull \hbox (badness 3009) in paragraph at lines 7077--7080 []\T1/ptm/m/n/10 Restarts are used for es-tab-lish-ing re-cov-ery pro-to-cols. They can be es-tab-lished us-ing Underfull \hbox (badness 1308) in paragraph at lines 7120--7128 []\T1/ptm/m/n/10 One ad-di-tional field that can be spec-i-fied for a restart i s []\T1/pcr/m/n/10 interactive[]\T1/ptm/m/n/10 . This should [106] [107] Overfull \hbox (0.78088pt too wide) in paragraph at lines 7291--7291 []\T1/pcr/m/n/10 zstdfile(description, open = "", encoding = getOption("encodi ng"),[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 7294--7294 []\T1/pcr/m/n/10 unz(description, filename, open = "", encoding = getOption("e ncoding"))[] [108] Underfull \hbox (badness 4505) in paragraph at lines 7346--7349 []\T1/ptm/m/n/10 character string, par-tially matched to []\T1/pcr/m/n/10 c("de fault", "internal", [109] [110] Underfull \hbox (badness 10000) in paragraph at lines 7481--7486 []\T1/pcr/m/n/10 file[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pipe[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 fifo[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 url[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 gzfile[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 bzfile[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 xzfile[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 zstdfile[]\T1/ ptm/m/n/10 , []\T1/pcr/m/n/10 unz[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1092) in paragraph at lines 7481--7486 []\T1/pcr/m/n/10 socketConnection[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 socketAcce pt []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 serverSocket []\T1/ptm/m/n/10 re-turn a con-nec-tion ob-ject [111] [112] [113] Underfull \hbox (badness 10000) in paragraph at lines 7744--7746 []\T1/ptm/m/n/10 It may be pos-si-ble to de-duce the cur-rent na-tive en-cod-in g from [114] Underfull \hbox (badness 3302) in paragraph at lines 7786--7793 []\T1/pcr/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/pcr/m/n/10 descri ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/pcr/m/n/10 "r" []\T1/ptm/m/n /10 only. This [115] [116] Underfull \vbox (badness 10000) has occurred while \output is active [117] Underfull \vbox (badness 10000) has occurred while \output is active [118] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8032--8032 []\T1/pcr/m/n/9 A <- read.table(con <- file("students", encoding = "UCS-2LE")) ; close(con)[] [119] [120] [121] [122] [123] Underfull \hbox (badness 10000) in paragraph at lines 8387--8389 []\T1/ptm/m/n/10 The cur-rent eval-u-a-tion depth (in-clud-ing two calls for th e call to [124] [125] Overfull \hbox (9.78043pt too wide) in paragraph at lines 8546--8546 []\T1/pcr/m/n/9 curlGetHeaders("http://bugs.r-project.org") ## this redirect s to https://[] [126] [127] [128] [129] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8780--8780 []\T1/pcr/m/n/9 tm <- seq(as.POSIXct("2012-06-01 06:00"), by = "6 hours", leng th.out = 24)[] [130] [131] Underfull \hbox (badness 10000) in paragraph at lines 8896--8906 []\T1/pcr/m/n/10 data.frame []\T1/ptm/m/n/10 con-verts each of its ar-gu-ments to a data frame by call-ing Underfull \hbox (badness 1975) in paragraph at lines 8896--8906 [][][]\T1/pcr/m/n/10 as.data.frame[][][](optional = TRUE)[]\T1/ptm/m/n/10 . As that is a generic func-tion, meth-ods can be [132] [133] Overfull \hbox (20.58041pt too wide) in paragraph at lines 9064--9064 [] \T1/pcr/m/n/9 c = seq(as.Date("2004-01-01"), by = "week", l ength.out = 3),[] [134] [135] [136] [137] Underfull \hbox (badness 10000) in paragraph at lines 9402--9414 \T1/pcr/m/n/10 23:59:59", format = "%Y-%m-%d %H:%M:%S", tz = "UTC") []\T1/ptm/m /n/10 may give []\T1/pcr/m/n/10 NA[]\T1/ptm/m/n/10 , and [138] [139] [140] [141] [142] [143] [144] [145] [146] Overfull \hbox (9.78043pt too wide) in paragraph at lines 10052--10052 []\T1/pcr/m/n/9 ### Promises in an environment [for advanced users]: -------- -------------[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 10054--10054 []\T1/pcr/m/n/9 e <- (function(x, y = 1, z) environment())(cos, "y", {cat(" HO !\n"); pi+2})[] [147] Overfull \hbox (60.78088pt too wide) in paragraph at lines 10082--10082 [] \T1/pcr/m/n/10 backtick = mode(expr) %in% c("call", "expression", "( ", "function"),[] Overfull \hbox (60.78088pt too wide) in paragraph at lines 10083--10083 [] \T1/pcr/m/n/10 control = c("keepNA", "keepInteger", "niceNames", "sh owAttributes"),[] [148] [149] Underfull \hbox (badness 5403) in paragraph at lines 10210--10212 []\T1/pcr/m/n/10 ..deparseOpts []\T1/ptm/m/n/10 is the [][][]\T1/pcr/m/n/10 cha racter[][][] []\T1/ptm/m/n/10 vec-tor of pos-si-ble de-pars-ing op-tions used b y Underfull \hbox (badness 6063) in paragraph at lines 10229--10231 []\T1/ptm/m/n/10 Surround un-eval-u-ated ex-pres-sions, but not [][][]\T1/pcr/m /n/10 formula[][][][]\T1/ptm/m/n/10 s, with [150] [151] [152] Underfull \hbox (badness 1603) in paragraph at lines 10459--10462 []\T1/ptm/m/n/10 a nu-meric value. The mod-u-lus (ab-so-lute value) of the de-t er-mi-nant if [153] [154] [155] [156] [157] [158] Overfull \hbox (12.78088pt too wide) in paragraph at lines 10932--10932 [] \T1/pcr/m/n/10 z <- as.POSIXct(c("2016-12-31 23:59:59", "2017-01-01 00:0 0:01"))[] [159] [160] [161] Underfull \hbox (badness 1917) in paragraph at lines 11096--11101 []\T1/pcr/m/n/10 provideDimnames(x) []\T1/ptm/m/n/10 pro-vides []\T1/pcr/m/n/10 dimnames []\T1/ptm/m/n/10 where ``miss-ing'', such that its re-sult has [162] Overfull \hbox (36.7804pt too wide) in paragraph at lines 11151--11151 []\T1/pcr/m/n/9 strd(provideDimnames(N, base= list(letters[-(1:9)], tail(LETTE RS)))) # recycling[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 11152--11152 []\T1/pcr/m/n/9 strd(provideDimnames(A, base= list(c("AA","BB")))) # recycling on both levels[] [163] Underfull \hbox (badness 1168) in paragraph at lines 11254--11259 []\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of []\ T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . Cur-rently this is only used by [164] [165] Overfull \hbox (25.98041pt too wide) in paragraph at lines 11356--11356 []\T1/pcr/m/n/9 ## From R 4.1.0 to 4.1.2, ...names() sometimes did not match n ames(list(...));[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 11358--11358 []\T1/pcr/m/n/9 chk.n2 <- function(...) stopifnot(identical(print(...names()), names(list(...))))[] [166] Underfull \hbox (badness 2828) in paragraph at lines 11477--11482 [][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / IEEE _ 754-[]19 85$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . Underfull \hbox (badness 10000) in paragraph at lines 11477--11482 \T1/pcr/m/n/10 org / wiki / IEEE _ 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr /m/n/10 https : / / en . wikipedia . org / wiki / IEEE _ Underfull \hbox (badness 10000) in paragraph at lines 11477--11482 \T1/pcr/m/n/10 754-[]2019$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/ pcr/m/n/10 https : [167] Overfull \hbox (42.78088pt too wide) in paragraph at lines 11508--11508 [] \T1/pcr/m/n/10 control = c("keepNA", "keepInteger", "niceNames", "showA ttributes"))[] [168] Overfull \hbox (15.18042pt too wide) in paragraph at lines 11582--11582 []\T1/pcr/m/n/9 ## Write an ASCII version of the \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 base\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 function mean() to our temp file, ..[] [169] Overfull \hbox (4.38043pt too wide) in paragraph at lines 11659--11659 []\T1/pcr/m/n/9 drop(1:3 %*% 2:4) # scalar product - w/o drop(.), would retur n 1x1 matrix[] [170] Overfull \hbox (9.78043pt too wide) in paragraph at lines 11740--11740 []\T1/pcr/m/n/9 aq <- transform(airquality, Month = factor(Month, labels = mon th.abb[5:9])) [171] [172] [173] Underfull \hbox (badness 6396) in paragraph at lines 11939--11947 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 10000) in paragraph at lines 11948--11950 []\T1/pcr/m/n/10 duplicated(x, fromLast = TRUE) []\T1/ptm/m/n/10 is equiv-a-len t to but faster than [174] [175] [176] Underfull \hbox (badness 10000) in paragraph at lines 12166--12169 []\T1/ptm/m/n/10 Do not use []\T1/pcr/m/n/10 dyn.unload []\T1/ptm/m/n/10 on a D LL loaded by [][][]\T1/pcr/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 : use [177] [178] [179] [180] [181] [182] Underfull \hbox (badness 2744) in paragraph at lines 12609--12611 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [183] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12632--12632 []\T1/pcr/m/n/9 Encoding(x.) # "unknown" (UTF-8 loc.) | "latin1" (8859-1/CP-12 52 loc.) | ....[] [184] [185] [186] Underfull \hbox (badness 5288) in paragraph at lines 12886--12888 []\T1/ptm/m/n/10 The path to the de-fault browser. Used to set the de-fault val ue of Underfull \hbox (badness 3039) in paragraph at lines 12896--12901 []\T1/ptm/m/n/10 Optional. The path to Ghostscript, used by [][][]\T1/pcr/m/n/1 0 dev2bitmap[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 bitmap[][][] []\T1/pt m/m/n/10 and [187] Underfull \hbox (badness 10000) in paragraph at lines 12953--12956 []\T1/ptm/m/n/10 The path to HTML []\T1/pcr/m/n/10 tidy[]\T1/ptm/m/n/10 . Used by []\T1/pcr/m/n/10 R CMD check []\T1/ptm/m/n/10 if Underfull \hbox (badness 10000) in paragraph at lines 12971--12973 []\T1/ptm/m/n/10 (and more). Op-tional. Set-tings for [188] [189] [190] [191] Underfull \hbox (badness 10000) in paragraph at lines 13221--13223 []\T1/ptm/m/n/10 a frame in the call-ing list. Equiv-a-lent to giv-ing []\T1/pc r/m/n/10 where []\T1/ptm/m/n/10 as Underfull \hbox (badness 5970) in paragraph at lines 13264--13266 []\T1/pcr/m/n/10 get0(): []\T1/ptm/m/n/10 The object---as from [][][]\T1/pcr/m/ n/10 get[][][](x, *)[]\T1/ptm/m/n/10 --- if []\T1/pcr/m/n/10 exists(x, *) []\T1 /ptm/m/n/10 is true, oth-er-wise [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] Overfull \hbox (9.78043pt too wide) in paragraph at lines 14081--14081 []\T1/pcr/m/n/9 ## "avector" := vector that keeps attributes. Could provide a constructor[] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] Underfull \hbox (badness 2253) in paragraph at lines 14817--14819 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see Underfull \hbox (badness 1490) in paragraph at lines 14852--14855 []\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m a-tion is given about the [214] [215] Underfull \hbox (badness 2573) in paragraph at lines 14989--14991 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/pcr /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/pcr/m/n/10 fsep = [216] [217] Underfull \hbox (badness 10000) in paragraph at lines 15150--15152 []\T1/ptm/m/n/10 logical: should file dates be pre-served where pos-si-ble? See [218] [219] Underfull \hbox (badness 10000) in paragraph at lines 15271--15275 [][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/pcr/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15282--15285 [][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . Overfull \hbox (47.58038pt too wide) in paragraph at lines 15303--15303 [] \T1/pcr/m/n/9 # |--> (TRUE,FALSE) : ok for A but not B as it exists already[] [220] Overfull \hbox (30.78088pt too wide) in paragraph at lines 15329--15329 []\T1/pcr/m/n/10 dir.create(path, showWarnings = TRUE, recursive = FALSE, mode = "0777")[] [221] Underfull \hbox (badness 10000) in paragraph at lines 15425--15428 [][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil e.exists[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/pcr/m/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/ m/n/10 unlink[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 basename[][][][]\T1/ ptm/m/n/10 , Overfull \hbox (9.78043pt too wide) in paragraph at lines 15435--15435 []\T1/pcr/m/n/9 f <- list.files(".", all.files = TRUE, full.names = TRUE, recu rsive = TRUE)[] [222] Underfull \hbox (badness 10000) in paragraph at lines 15501--15504 []\T1/pcr/m/n/10 packageNotFoundError []\T1/ptm/m/n/10 cre-ates an er-ror con-d i-tion ob-ject of class Overfull \hbox (20.58041pt too wide) in paragraph at lines 15518--15518 []\T1/pcr/m/n/9 ## will not give an error, maybe a warning about *all* locatio ns it is found:[] [223] Overfull \hbox (0.78088pt too wide) in paragraph at lines 15547--15547 []\T1/pcr/m/n/10 findInterval(x, vec, rightmost.closed = FALSE, all.inside = F ALSE, Overfull \hbox (6.78088pt too wide) in paragraph at lines 15548--15548 [] \T1/pcr/m/n/10 left.open = FALSE, checkSorted = TRUE, checkNA = TRUE)[] [224] Underfull \hbox (badness 3965) in paragraph at lines 15586--15590 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, Overfull \hbox (52.98038pt too wide) in paragraph at lines 15638--15638 []\T1/pcr/m/n/9 stopifnot(identical(it, ## suppressing the checks is faster *B UT* dangerous, unless[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 15639--15639 [] \T1/pcr/m/n/9 ## you *know* that X is sorted and tt contains no NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 15640--15640 [] \T1/pcr/m/n/9 findInterval(tt, X, checkSorted=FALSE, che ckNA=FALSE)))[] [225] [226] Overfull \hbox (0.78088pt too wide) in paragraph at lines 15753--15753 [] \T1/pcr/m/n/10 .C(.NAME, ..., NAOK = FALSE, DUP = TRUE, PACKAGE, ENCO DING) Overfull \hbox (0.78088pt too wide) in paragraph at lines 15754--15754 [] \T1/pcr/m/n/10 .Fortran(.NAME, ..., NAOK = FALSE, DUP = TRUE, PACKAGE, ENCO DING)[] [227] [228] [229] [230] Overfull \hbox (63.78036pt too wide) in paragraph at lines 15996--15996 []\T1/pcr/m/n/9 ## formals returns a pairlist. Arguments with no default have type symbol (aka name).[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 15999--15999 []\T1/pcr/m/n/9 ## formals returns NULL for primitive functions. Use it in co mbination with[] [231] Underfull \hbox (badness 1331) in paragraph at lines 16088--16092 []\T1/ptm/m/n/10 either a log-i-cal spec-i-fy-ing whether el-e-ments of a real or com-plex vec- Underfull \hbox (badness 2012) in paragraph at lines 16088--16092 \T1/ptm/m/n/10 tor should be en-coded in sci-en-tific for-mat, or an in-te-ger penalty (see Underfull \hbox (badness 10000) in paragraph at lines 16095--16095 []\T1/pcr/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 big.interval[]\T1/ ptm/m/n/10 , []\T1/pcr/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sma ll.interval[]\T1/ptm/m/n/10 , [232] Underfull \hbox (badness 6944) in paragraph at lines 16184--16187 [][][]\T1/pcr/m/n/10 formatC[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 paste [][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.character[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/pcr/m/n/10 sprintf[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 p rint[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 prettyNum[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/pcr/m/n/10 toString[][][][]\T1/ptm/m/n/10 , [233] Overfull \hbox (4.38043pt too wide) in paragraph at lines 16214--16214 []\T1/pcr/m/n/9 z <- list(a = letters[1:3], b = (-pi+0i)^((-2:2)/2), c = c(1,1 0,100,1000),[] [234] [235] Underfull \hbox (badness 10000) in paragraph at lines 16352--16354 []\T1/pcr/m/n/10 prettyNum() []\T1/ptm/m/n/10 is used for ``pret-ti-fy-ing'' (p os-si-bly for-mat-ted) num-bers, also in Overfull \hbox (48.78088pt too wide) in paragraph at lines 16372--16372 [] \T1/pcr/m/n/10 decimal.mark = getOption("OutDec"), input.d.mark = decimal.mark,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 16378--16378 []\T1/pcr/m/n/10 .format.zeros(x, zero.print, nx = suppressWarnings(as.numeric (x)),[] [236] Underfull \hbox (badness 2790) in paragraph at lines 16385--16388 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/pcr/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for Underfull \hbox (badness 1024) in paragraph at lines 16416--16423 []\T1/pcr/m/n/10 "f" []\T1/ptm/m/n/10 gives num-bers in the usual []\T1/pcr/m/n /10 xxx.xxx []\T1/ptm/m/n/10 for-mat; []\T1/pcr/m/n/10 "e" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "E" []\T1/ptm/m/n/10 give [237] Underfull \hbox (badness 10000) in paragraph at lines 16492--16494 []\T1/ptm/m/n/10 This works via []\T1/pcr/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/pcr/m/n/10 .format.zeros(*, Underfull \hbox (badness 10000) in paragraph at lines 16514--16519 []\T1/ptm/m/n/10 For num-bers, []\T1/pcr/m/n/10 formatC() []\T1/ptm/m/n/10 call s []\T1/pcr/m/n/10 prettyNum() []\T1/ptm/m/n/10 when needed which it-self calls Underfull \hbox (badness 2426) in paragraph at lines 16520--16522 []\T1/ptm/m/n/10 If you set []\T1/pcr/m/n/10 format []\T1/ptm/m/n/10 it over-ri des the set-ting of []\T1/pcr/m/n/10 mode[]\T1/ptm/m/n/10 , so []\T1/pcr/m/n/10 formatC(123.45, mode = [238] Underfull \hbox (badness 10000) in paragraph at lines 16531--16539 []\T1/pcr/m/n/10 prettyNum []\T1/ptm/m/n/10 is the util-ity func-tion for pret- ti-fy-ing []\T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 x []\T1/ptm/m/n /10 can be com-plex (or [239] Overfull \hbox (4.38043pt too wide) in paragraph at lines 16638--16638 []\T1/pcr/m/n/9 fc <- formatC(1.234 + 10^(0:8), format = "fg", width = 11, big .mark = "\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ")[] Underfull \vbox (badness 10000) has occurred while \output is active [240] Overfull \hbox (42.18039pt too wide) in paragraph at lines 16660--16660 []\T1/pcr/m/n/9 doLC <- FALSE # <= R warns, so change to TRUE manually if you want see the effect[] [241] [242] Overfull \hbox (24.78088pt too wide) in paragraph at lines 16846--16846 []\T1/pcr/m/n/10 Reduce(f, x, init, right = FALSE, accumulate = FALSE, simplif y = TRUE) [243] [244] [245] [246] [247] [248] [249] Overfull \hbox (4.38043pt too wide) in paragraph at lines 17331--17331 []\T1/pcr/m/n/9 ## very low-level: get()ing the "missing argument", e.g., insi de browser()[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 17342--17342 [] \T1/pcr/m/n/9 is.symbol(E$m) # => valid argument to get(), and *also* ge ts \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 missing arg\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 :[] [250] [251] [252] Overfull \hbox (20.58041pt too wide) in paragraph at lines 17524--17524 []\T1/pcr/m/n/9 utils::tail(getLoadedDLLs(), 2) # the last 2 loaded ones, stil l a DLLInfoList[] [253] Underfull \hbox (badness 2418) in paragraph at lines 17633--17637 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/pcr/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [254] Underfull \hbox (badness 6510) in paragraph at lines 17640--17643 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 name []\T1/ptm/m/n/10 con-tains only one s ym-bol name and []\T1/pcr/m/n/10 unlist []\T1/ptm/m/n/10 is []\T1/pcr/m/n/10 TR UE[]\T1/ptm/m/n/10 , then the sin-gle Underfull \hbox (badness 2326) in paragraph at lines 17675--17682 [][][]\T1/pcr/m/n/10 getDLLRegisteredRoutines[][][][]\T1/ptm/m/n/10 , [][][]\T1 /pcr/m/n/10 is.loaded[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .C[][][][]\T 1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .Fortran[][][][]\T1/ptm/m/n/10 , [][][]\T1/ pcr/m/n/10 .External[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .Call[][][][] \T1/ptm/m/n/10 , [255] [256] Overfull \hbox (9.78043pt too wide) in paragraph at lines 17835--17835 []\T1/pcr/m/n/9 ## Not run: ## for translation, those strings should appear in R-pkg.pot as[] [257] Overfull \hbox (20.58041pt too wide) in paragraph at lines 17856--17856 []\T1/pcr/m/n/9 if(is.na(thisLang) || !nzchar(thisLang)) thisLang <- "en" # "f actory" default[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 17859--17859 []\T1/pcr/m/n/9 gettext(enT, domain="R-stats")# "leeres Modell angegeben" (if translation works)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 17889--17889 []\T1/pcr/m/n/9 ## Here, we reset to the *original* setting before the full ex ample started:[] [258] [259] Overfull \hbox (0.78088pt too wide) in paragraph at lines 18027--18027 []\T1/pcr/m/n/10 grep(pattern, x, ignore.case = FALSE, perl = FALSE, value = F ALSE, Overfull \hbox (0.78088pt too wide) in paragraph at lines 18030--18030 []\T1/pcr/m/n/10 grepv(pattern, x, ignore.case = FALSE, perl = FALSE, value = TRUE,[] [260] Underfull \hbox (badness 1867) in paragraph at lines 18058--18065 []\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][] [] (or char-ac-ter string for [261] [262] [263] [264] Overfull \hbox (20.58041pt too wide) in paragraph at lines 18387--18387 [] \T1/pcr/m/n/9 nms <- nms[is.na(match(nms, c("F","T")))] # <-- work around "checking hack"[] Underfull \vbox (badness 10000) has occurred while \output is active [265] Overfull \hbox (36.7804pt too wide) in paragraph at lines 18416--18416 []\T1/pcr/m/n/9 name.rex <- "(?[[:upper:]][[:lower:]]+) (?[[:uppe r:]][[:lower:]]+)"[] Underfull \vbox (badness 10000) has occurred while \output is active [266] Overfull \hbox (0.78088pt too wide) in paragraph at lines 18472--18472 [] \T1/pcr/m/n/10 value = FALSE, fixed = FALSE, all = FALSE, invert = F ALSE)[] [267] [268] [269] [270] Overfull \hbox (9.78043pt too wide) in paragraph at lines 18854--18854 []\T1/pcr/m/n/9 (ii <- grouping(x <- c(1, 1, 3:1, 1:4, 3), y <- c(9, 9:1), z < - c(2, 1:9))) [271] Overfull \hbox (4.38043pt too wide) in paragraph at lines 18919--18919 []\T1/pcr/m/n/9 z <- gzcon(url("https://www.stats.ox.ac.uk/pub/datasets/csb/ch 12.dat.gz"))[] [272] [273] [274] [275] Overfull \hbox (0.78088pt too wide) in paragraph at lines 19130--19130 []\T1/pcr/m/n/10 iconv(x, from = "", to = "", sub = NA, mark = TRUE, toRaw = F ALSE) [276] [277] Underfull \hbox (badness 1360) in paragraph at lines 19293--19297 []\T1/ptm/m/n/10 The most portable name for the ISO 8859-15 en-cod-ing, com-mon ly known as `Latin 9', Underfull \hbox (badness 1210) in paragraph at lines 19293--19297 \T1/ptm/m/n/10 is []\T1/pcr/m/n/10 "iso885915"[]\T1/ptm/m/n/10 : most plat-form s sup-port both []\T1/pcr/m/n/10 "latin-9" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/1 0 "latin9" []\T1/ptm/m/n/10 but GNU [278] [279] [280] Underfull \hbox (badness 1163) in paragraph at lines 19513--19515 []\T1/ptm/m/n/10 The ICU user guide chap-ter on col-la-tion ([][]$\T1/pcr/m/n/1 0 https : / / unicode-[]org . github . io / icu / Overfull \hbox (9.78043pt too wide) in paragraph at lines 19521--19521 []\T1/pcr/m/n/9 ## As we don\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 t know the current s ettings, we can only reset to the default.[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 19551--19551 []\T1/pcr/m/n/10 identical(x, y, num.eq = TRUE, single.NA = TRUE, attrib.as.se t = TRUE, [281] [282] Overfull \hbox (30.78088pt too wide) in paragraph at lines 19645--19645 [] \T1/pcr/m/n/10 num.eq = FALSE, single.NA = FALSE, attrib.as.se t = FALSE,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 19646--19646 [] \T1/pcr/m/n/10 ignore.bytecode = FALSE, ignore.environment = F ALSE,[] [283] Overfull \hbox (25.98041pt too wide) in paragraph at lines 19699--19699 []\T1/pcr/m/n/9 ### For functions ("closure"s): ------------------------------ ----------------[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 19705--19705 []\T1/pcr/m/n/9 identical(f, g) # TRUE, as bytecode is ignored by default[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 19708--19708 []\T1/pcr/m/n/9 ## GLM families contain several functions, some of which share an environment:[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 19714--19714 []\T1/pcr/m/n/9 op <- options(keep.source = TRUE) # and so, these have differi ng "srcref" :[] [284] [285] Overfull \hbox (4.38043pt too wide) in paragraph at lines 19841--19841 []\T1/pcr/m/n/9 ## This is a (not atypical) case where it is better *not* to u se ifelse(),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 19849--19849 []\T1/pcr/m/n/9 ## example of different return modes (and \TS1/pcr/m/n/9 '\T1/ pcr/m/n/9 test\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 alone determining length):[] [286] [287] [288] Underfull \hbox (badness 10000) in paragraph at lines 20054--20056 []\T1/ptm/m/n/10 how some er-rors are han-dled and re-ported, e.g. see [][][]\T 1/pcr/m/n/10 stop[][][] []\T1/ptm/m/n/10 and [289] Underfull \hbox (badness 2057) in paragraph at lines 20157--20183 [][][]\T1/pcr/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.double[][][][]\T1/pt m/m/n/10 , [][][]\T1/pcr/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc r/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.raw[][][][] \T1/ptm/m/n/10 , [290] [291] [292] Underfull \hbox (badness 10000) in paragraph at lines 20355--20363 \T1/ptm/m/n/10 Also avail-able at [][]$\T1/pcr/m/n/10 https : / / docs . oracle . com / cd / E19957-[]01 / 806-[]3568 / ncg _ [293] [294] [295] Underfull \hbox (badness 4699) in paragraph at lines 20555--20558 []\T1/pcr/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "numeric"[]\T1/ptm/m/n/10 , [296] [297] Overfull \hbox (0.78088pt too wide) in paragraph at lines 20687--20687 []\T1/pcr/m/n/10 ISOdate(year, month, day, hour = 12, min = 0, sec = 0, tz = " GMT")[] [298] [299] Underfull \hbox (badness 4739) in paragraph at lines 20824--20826 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [300] Overfull \hbox (36.7804pt too wide) in paragraph at lines 20879--20879 []\T1/pcr/m/n/9 isSymmetric(D3) # FALSE (as row and co lumn names differ)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 20880--20880 []\T1/pcr/m/n/9 isSymmetric(D3, check.attributes=FALSE) # TRUE (as names are not checked)[] [301] Overfull \hbox (48.78088pt too wide) in paragraph at lines 20995--20995 []\T1/pcr/m/n/10 .kappa_tri(z, exact = FALSE, LINPACK = TRUE, norm = NULL, upl o = "U", ...)[] [302] Overfull \hbox (12.78088pt too wide) in paragraph at lines 20997--20997 []\T1/pcr/m/n/10 rcond(x, norm = c("O","I","1"), triangular = FALSE, uplo = "U ", ...)[] [303] Underfull \hbox (badness 2961) in paragraph at lines 21081--21084 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/pcr/m/n/10 https : / / n etlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / [304] Overfull \hbox (20.58041pt too wide) in paragraph at lines 21137--21137 []\T1/pcr/m/n/9 ## Moore-Penrose inverse { ~= MASS::ginv(); differing tol (val ue & meaning)}:[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 21159--21159 []\T1/pcr/m/n/9 try( kappa(m76, exact=TRUE, norm="1") )# error in solve().. m ust be square[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 21161--21161 []\T1/pcr/m/n/9 ## ==> use pseudo-inverse instead of solve() for rectangular { and norm != "2"}:[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 21181--21181 [] \T1/pcr/m/n/9 inv_z = solve(A, tol = 1e-19))) # 5.22057e16 on x86_ 64 Linux with GCC[] [305] [306] [307] [308] [309] [310] Underfull \hbox (badness 1975) in paragraph at lines 21583--21586 []\T1/ptm/m/n/10 The value of the in-ter-nal eval-u-a-tion of a top-level \T1/p hv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sion is al-ways as-signed to [311] [312] [313] [314] [315] [316] [317] Underfull \hbox (badness 1077) in paragraph at lines 21999--22004 []\T1/ptm/m/n/10 In late 2017 a []\T1/pcr/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/pcr/m/n/10 libcurl []\T 1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 22013--22020 [][][]$\T1/pcr/m/n/10 https : / / curl . se / docs / sslcerts . html$[][] \T1/p tm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / curl . se / docs / [318] Underfull \hbox (badness 1112) in paragraph at lines 22086--22095 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/pcr/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , Underfull \hbox (badness 2970) in paragraph at lines 22144--22147 []\T1/pcr/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/pcr/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a Underfull \hbox (badness 2951) in paragraph at lines 22144--22147 \T1/ptm/m/n/10 hid-den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [319] [320] Underfull \hbox (badness 10000) in paragraph at lines 22257--22261 []\T1/ptm/m/n/10 To sup-press mes-sages dur-ing the load-ing of pack-ages use Underfull \hbox (badness 1454) in paragraph at lines 22257--22261 [][][]\T1/pcr/m/n/10 suppressPackageStartupMessages[][][][]\T1/ptm/m/n/10 : thi s will sup-press all mes-sages from \T1/phv/m/n/10 R \T1/ptm/m/n/10 it-self Underfull \hbox (badness 1221) in paragraph at lines 22262--22269 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 library []\T1/ptm/m/n/10 is called with no []\T1/pcr/m/n/10 package []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 help []\T1/ptm/m /n/10 ar-gu-ment, it lists all avail-able pack- [321] [322] Underfull \hbox (badness 10000) in paragraph at lines 22391--22398 [][][]\T1/pcr/m/n/10 attach[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 detach [][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 search[][][][]\T1/ptm/m/n/10 , [] [][]\T1/pcr/m/n/10 objects[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 autoloa d[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 requireNamespace[][][][]\T1/ptm/ m/n/10 , [323] [324] Underfull \hbox (badness 10000) in paragraph at lines 22512--22516 []\T1/ptm/m/n/10 Do not use [][][]\T1/pcr/m/n/10 dyn.unload[][][] []\T1/ptm/m/n /10 on a DLL loaded by []\T1/pcr/m/n/10 library.dynam[]\T1/ptm/m/n/10 : use [325] [326] [327] Overfull \hbox (6.78088pt too wide) in paragraph at lines 22750--22750 [] \T1/pcr/m/n/10 ignore.case = FALSE, include.dirs = FALSE, no.. = FALSE)[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 22754--22754 [] \T1/pcr/m/n/10 ignore.case = FALSE, include.dirs = FALSE, no.. = FALSE)[] [328] Underfull \hbox (badness 3343) in paragraph at lines 22815--22819 [][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil e.access[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 files[][][] []\T1/ptm/ m/n/10 for many more file han-dling func-tions and [329] [330] Overfull \hbox (4.38043pt too wide) in paragraph at lines 22953--22953 [] \T1/pcr/m/n/9 identical(L$b, e$b)) # "$" working for environments as for lists[] [331] Overfull \hbox (20.58041pt too wide) in paragraph at lines 22964--22964 [] \T1/pcr/m/n/9 df = data.frame(x = rnorm(20), y = rbinom(20, 1, prob = 0.2))),[] [332] Overfull \hbox (9.78043pt too wide) in paragraph at lines 23075--23075 []\T1/pcr/m/n/9 ## This however annihilates all objects in .GlobalEnv with the same names ![] Overfull \hbox (74.58035pt too wide) in paragraph at lines 23078--23078 []\T1/pcr/m/n/9 attach("all.rda") # safer and will warn about masked objects w / same name in .GlobalEnv[] [333] Underfull \hbox (badness 6380) in paragraph at lines 23125--23133 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup- [334] Underfull \hbox (badness 2564) in paragraph at lines 23229--23232 []\T1/ptm/m/n/10 Almost all the out-put rou-tines used by \T1/phv/m/n/10 R \T1/ ptm/m/n/10 it-self un-der Win-dows ig-nore the set-ting of [335] Overfull \hbox (4.38043pt too wide) in paragraph at lines 23272--23272 []\T1/pcr/m/n/9 Sys.setlocale("LC_TIME", "de_DE.UTF-8") # Linux, macOS, other Unix-alikes[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 23276--23276 []\T1/pcr/m/n/9 c(m = months(then), wd = weekdays(then)) # in C_TIME locale \T S1/pcr/m/n/9 '\T1/pcr/m/n/9 cT\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 ; typically German [] Overfull \hbox (42.18039pt too wide) in paragraph at lines 23280--23280 []\T1/pcr/m/n/9 c(m = months(then), wd = weekdays(then)) # "standard" (still p latform specific ?)[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 23287--23287 []\T1/pcr/m/n/9 ## Not run: Sys.setlocale("LC_COLLATE", "C") # turn off loca le-specific sorting,[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 23289--23289 []\T1/pcr/m/n/9 Sys.setenv("LANGUAGE" = "es") # set the language for error/war ning messages[] [336] [337] [338] Underfull \hbox (badness 1400) in paragraph at lines 23466--23470 [][][]\T1/pcr/m/n/10 raw[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 logical[] [][] []\T1/ptm/m/n/10 or `number-like' vec-tors (i.e., of types [][][]\T1/pcr/m /n/10 double[][][] []\T1/ptm/m/n/10 (class [339] [340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] Overfull \hbox (52.98038pt too wide) in paragraph at lines 24314--24314 []\T1/pcr/m/n/9 zN <- c(complex(real = NA , imaginary = r ), complex(real = r , imaginary = NA ),[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 24315--24315 [] \T1/pcr/m/n/9 complex(real = r , imaginary = NaN), complex(real = N aN, imaginary = r ))[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 24318--24318 []\T1/pcr/m/n/9 zM ##--> many "NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s" (= 1) and th e four non-NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s (3 different ones, at 7,9,10)[] [351] [352] Overfull \hbox (20.58041pt too wide) in paragraph at lines 24415--24415 []\T1/pcr/m/n/9 match.arg(c("a", ""), c("", NA, "bb", "abc"), several.ok=TRUE ) # |--> "abc"[] Underfull \hbox (badness 1655) in paragraph at lines 24449--24453 []\T1/ptm/m/n/10 `function' on this help page means an in-ter-preted func-tion (also known as a `clo-sure'): [353] [354] [355] [356] Underfull \hbox (badness 1292) in paragraph at lines 24700--24703 []\T1/ptm/m/n/10 For ma-trix \T1/ptm/m/it/10 cross \T1/ptm/m/n/10 prod-ucts, [] [][]\T1/pcr/m/n/10 crossprod[][][]() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 tcro ssprod() []\T1/ptm/m/n/10 are typ-i-cally prefer-able. [357] [358] [359] [360] [361] Overfull \hbox (0.78088pt too wide) in paragraph at lines 25007--25007 []\T1/pcr/m/n/10 memCompress(from, type = c("gzip", "bzip2", "xz", "zstd", "no ne")) [362] [363] [364] [365] Underfull \hbox (badness 1014) in paragraph at lines 25328--25336 \T1/ptm/m/n/10 al-low more (up to 3Gb). See [][]$\T1/pcr/m/n/10 https : / / lea rn . microsoft . com / en-[]gb / windows / Underfull \hbox (badness 10000) in paragraph at lines 25328--25336 \T1/pcr/m/n/10 desktop / Memory / physical-[]address-[]extension$[][] \T1/ptm/m /n/10 and [][]$\T1/pcr/m/n/10 https : / / learn . [366] [367] Overfull \hbox (0.78088pt too wide) in paragraph at lines 25402--25402 [] \T1/pcr/m/n/10 by.x = by, by.y = by, all = FALSE, all.x = all, all.y = all,[] [368] [369] [370] [371] [372] [373] [374] [375] Underfull \hbox (badness 1448) in paragraph at lines 25952--25960 []\T1/pcr/m/n/10 anyNA(recursive = FALSE) []\T1/ptm/m/n/10 works the same way a s []\T1/pcr/m/n/10 is.na[]\T1/ptm/m/n/10 ; []\T1/pcr/m/n/10 anyNA(recursive = [376] Underfull \hbox (badness 3849) in paragraph at lines 26067--26072 []\T1/pcr/m/n/10 as.name []\T1/ptm/m/n/10 first co-erces its ar-gu-ment in-ter- nally to a char-ac-ter vec-tor (so meth-ods for [377] Underfull \hbox (badness 2165) in paragraph at lines 26144--26150 []\T1/ptm/m/n/10 For an [][][]\T1/pcr/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, Underfull \hbox (badness 1199) in paragraph at lines 26144--26150 \T1/ptm/m/n/10 i.e., []\T1/pcr/m/n/10 names(as.list(env, all.names = TRUE)) []\ T1/ptm/m/n/10 which are also given by [][][]\T1/pcr/m/n/10 ls[][][](env, Underfull \hbox (badness 3148) in paragraph at lines 26144--26150 \T1/pcr/m/n/10 all.names = TRUE, sorted = FALSE)[]\T1/ptm/m/n/10 . If the en-vi -ron-ment is used as a hash ta-ble, [378] [379] [380] Underfull \hbox (badness 2237) in paragraph at lines 26307--26309 []\T1/ptm/m/n/10 character string: par-tial match-ing to one of []\T1/pcr/m/n/1 0 c("bytes", "chars", [381] [382] [383] Underfull \hbox (badness 6188) in paragraph at lines 26534--26537 []\T1/ptm/m/n/10 optional [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/pcr/m/n/10 print()[]\T1/ptm/m/n/10 , used by [384] [385] [386] Underfull \hbox (badness 1521) in paragraph at lines 26724--26738 \T1/ptm/m/n/10 tion []\T1/pcr/m/n/10 GetFinalPathNameByHandle []\T1/ptm/m/n/10 and in case of an er-ror (such as in-suf-fi-cient per- [387] [388] [389] [390] Underfull \hbox (badness 2197) in paragraph at lines 27040--27044 []\T1/ptm/m/n/10 Loading a names-pace should where pos-si-ble be silent, with s tartup mes-sages given by Underfull \hbox (badness 4048) in paragraph at lines 27040--27044 []\T1/pcr/m/n/10 .onAttach[]\T1/ptm/m/n/10 . These mes-sages (and any es-sen-ti al ones from []\T1/pcr/m/n/10 .onLoad[]\T1/ptm/m/n/10 ) should use [391] Underfull \hbox (badness 2846) in paragraph at lines 27054--27058 []\T1/ptm/m/n/10 Uses of []\T1/pcr/m/n/10 library []\T1/ptm/m/n/10 with ar-gu-m ent []\T1/pcr/m/n/10 help []\T1/ptm/m/n/10 to dis-play ba-sic in-for-ma-tion ab out the pack- Underfull \hbox (badness 1990) in paragraph at lines 27054--27058 \T1/ptm/m/n/10 age should use []\T1/pcr/m/n/10 format []\T1/ptm/m/n/10 on the c om-puted pack-age in-for-ma-tion ob-ject and pass this to Overfull \hbox (12.78088pt too wide) in paragraph at lines 27096--27096 []\T1/pcr/m/n/10 attachNamespace(ns, pos = 2L, depends = NULL, exclude, includ e.only) Overfull \hbox (0.78088pt too wide) in paragraph at lines 27100--27100 [] \T1/pcr/m/n/10 keep.parse.data = getOption("keep.parse.data.pk gs"))[] [392] Underfull \hbox (badness 10000) in paragraph at lines 27149--27155 []\T1/pcr/m/n/10 loadNamespace []\T1/ptm/m/n/10 does not at-tach the name space it loads to the search path. Underfull \hbox (badness 1168) in paragraph at lines 27149--27155 []\T1/pcr/m/n/10 attachNamespace []\T1/ptm/m/n/10 can be used to at-tach a fram e con-tain-ing the ex-ported val-ues of a Underfull \hbox (badness 10000) in paragraph at lines 27162--27164 []\T1/pcr/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/pcr/m/n/10 pkg %in% [393] Overfull \hbox (9.78043pt too wide) in paragraph at lines 27229--27229 [] \T1/pcr/m/n/9 ## The string "foo" and the symbol \TS1/pcr/m/n/9 '\T1/pcr/m/ n/9 foo\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 can be used interchangeably here:[] [394] [395] [396] Underfull \hbox (badness 8189) in paragraph at lines 27428--27434 []\T1/ptm/m/n/10 The de-fault method for []\T1/pcr/m/n/10 is.numeric []\T1/ptm/ m/n/10 re-turns []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode[][][] [397] [398] [399] Underfull \hbox (badness 2591) in paragraph at lines 27653--27661 \T1/ptm/m/n/10 ject as ob-tained by [][][]\T1/pcr/m/n/10 R.version[][][][]\T1/p tm/m/n/10 . For []\T1/pcr/m/n/10 as.numeric_version []\T1/ptm/m/n/10 and [400] [401] [402] [403] [404] Underfull \hbox (badness 1603) in paragraph at lines 27939--27941 []\T1/ptm/m/n/10 date ob-jects or char-ac-ter vec-tors. (Char-ac-ter vec-tors a re con-verted by [405] Underfull \hbox (badness 1210) in paragraph at lines 28073--28082 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini- [406] [407] [408] Underfull \hbox (badness 3271) in paragraph at lines 28294--28297 []\T1/ptm/m/n/10 default PDF viewer. The de-fault is set from the en-vi-ron-men t vari-able [409] [410] [411] Underfull \hbox (badness 3138) in paragraph at lines 28605--28611 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/pcr/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 28605--28611 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/pcr/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 2088) in paragraph at lines 28605--28611 \T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 1389) in paragraph at lines 28644--28646 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [412] Underfull \hbox (badness 10000) in paragraph at lines 28675--28681 []\T1/ptm/m/n/10 logical: should per-directory pack-age lock-ing be used by Underfull \hbox (badness 3826) in paragraph at lines 28690--28695 []\T1/ptm/m/n/10 Used by [][][]\T1/pcr/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly Underfull \hbox (badness 1009) in paragraph at lines 28708--28711 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/pcr/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/pcr/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 28724--28727 []\T1/ptm/m/n/10 The de-fault type of pack-ages to be down-loaded and in-stalle d -- see [413] [414] Underfull \vbox (badness 10000) has occurred while \output is active [415] [416] [417] Overfull \hbox (4.38043pt too wide) in paragraph at lines 29110--29110 []\T1/pcr/m/n/9 system.time(o <- sort.list(xx, method = "radix")) # 0.007 sec, 300X faster[] Underfull \vbox (badness 10000) has occurred while \output is active [418] Underfull \hbox (badness 10000) in paragraph at lines 29123--29127 []\T1/ptm/m/n/10 where el-e-ment []\T1/pcr/m/n/10 A[c(arrayindex.x, arrayindex. y)] = FUN(X[arrayindex.x], [419] [420] Underfull \hbox (badness 1210) in paragraph at lines 29270--29273 []\T1/pcr/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/pcr/m/n/10 parse(tex t=s, [421] [422] Overfull \hbox (25.98041pt too wide) in paragraph at lines 29465--29465 []\T1/pcr/m/n/9 tryCatch(parse(text = txt, srcfile = sf), error = function(e) "Syntax error.")[] [423] Underfull \hbox (badness 1478) in paragraph at lines 29495--29500 \T1/ptm/m/n/10 zero-length [][][]\T1/pcr/m/n/10 character[][][](0)[]\T1/ptm/m/n /10 . Note that when []\T1/pcr/m/n/10 collapse []\T1/ptm/m/n/10 is a string, [424] Underfull \hbox (badness 7133) in paragraph at lines 29554--29560 [][][]\T1/pcr/m/n/10 toString[][][] []\T1/ptm/m/n/10 typ-i-cally calls []\T1/pc r/m/n/10 paste(*, collapse=", ")[]\T1/ptm/m/n/10 . String ma-nip-u-la-tion with Overfull \hbox (42.18039pt too wide) in paragraph at lines 29576--29576 []\T1/pcr/m/n/9 ## Notice that the recycling rules make every input as long as the longest input.[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 29588--29588 []\T1/pcr/m/n/9 paste("1st", "2nd", "3rd", collapse = ", ") # probably not wha t you wanted[] Overfull \hbox (17.87582pt too wide) in paragraph at lines 29601--29601 []\T1/pcr/m/n/9 ## zero length arguments recycled as \TS1/cmtt/m/n/9 `\T1/pcr/ m/n/9 ""\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 -- NB: \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 { }\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 <==> character(0) here[] [425] Overfull \hbox (15.18042pt too wide) in paragraph at lines 29604--29604 []\T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 recycle0 = TRUE\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 allows standard vectorized behaviour, i.e., zero-length[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 29605--29605 []\T1/pcr/m/n/9 ## recycling resulting in zero-length result character(0):[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 29608--29608 []\T1/pcr/m/n/9 paste("The value is", val[valid], "-- not so good!") # -> ".. value is -- not .."[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 29609--29609 []\T1/pcr/m/n/9 paste("The value is", val[valid], "-- good: empty!", recycle0= TRUE) # -> character(0)[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 29612--29612 []\T1/pcr/m/n/9 paste("foo", {}, "bar", collapse = "|") # |-- > "foo bar"[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 29614--29614 []\T1/pcr/m/n/9 ## If all arguments are empty (and collapse a string), "" r esults always[] [426] [427] [428] Overfull \hbox (25.98041pt too wide) in paragraph at lines 29802--29802 []\T1/pcr/m/n/9 mtcars |> subset(cyl == 4) |> nrow() # same as nrow(subset(mt cars, cyl == 4))[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 29820--29820 []\T1/pcr/m/n/9 stop() |> (function(...) {})() # stop() is not used on RHS so is not evaluated[] [429] Underfull \hbox (badness 1360) in paragraph at lines 29875--29879 []\T1/ptm/m/n/10 All other []\T1/pcr/m/n/10 type[]\T1/ptm/m/n/10 s give a warn- ing or an er-ror; us-ing, e.g., []\T1/pcr/m/n/10 type = [430] [431] [432] [433] Underfull \hbox (badness 2277) in paragraph at lines 30189--30195 \T1/ptm/m/n/10 i.e., strictly in-clude the bounds of []\T1/pcr/m/n/10 x[]\T1/pt m/m/n/10 . New from \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0, al-low-ing [434] Overfull \hbox (0.78088pt too wide) in paragraph at lines 30224--30224 [] \T1/pcr/m/n/10 (min.n = 1, shrink.sml = 0.25, high.u.bias = 0.8, u5.bias = 1.7,[] [435] Underfull \hbox (badness 1701) in paragraph at lines 30319--30323 []\T1/ptm/m/n/10 This func-tion is al-most never used: []\TS1/cmtt/m/n/10 `\T1/ pcr/m/n/10 name\TS1/cmtt/m/n/10 ` []\T1/ptm/m/n/10 or, more care-fully, [][][]\ T1/pcr/m/n/10 get[][][](name, envir = Overfull \hbox (96.18033pt too wide) in paragraph at lines 30335--30335 []\T1/pcr/m/n/9 try(structure(mysqrt, comment = "primitive function")) # depre cation warning; soon an error[] [436] Underfull \hbox (badness 1796) in paragraph at lines 30389--30392 []\T1/ptm/m/n/10 character string (or []\T1/pcr/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/pcr/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [437] [438] [439] [440] Underfull \hbox (badness 10000) in paragraph at lines 30600--30603 []\T1/ptm/m/n/10 Option []\T1/pcr/m/n/10 width []\T1/ptm/m/n/10 con-trols the p rint-ing of vec-tors, ma-tri-ces and ar-rays, and op-tion [441] Overfull \hbox (47.58038pt too wide) in paragraph at lines 30671--30671 []\T1/pcr/m/n/9 (x <- 2^seq(-8, 30, by=1/4)) # auto-prints; by default all in "exponential" format[] [442] [443] [444] [445] [446] [447] [448] Underfull \hbox (badness 2961) in paragraph at lines 31156--31159 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/pcr/m/n/10 https : / / n etlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / [449] [450] Overfull \hbox (25.98041pt too wide) in paragraph at lines 31305--31305 [] \T1/pcr/m/n/9 c1 = rep(c(1,0,0), 2), c2 = rep(c(0,1,0), 2), c3 = rep(c(0,0,1),2))[] [451] [452] [453] [454] Overfull \hbox (15.18042pt too wide) in paragraph at lines 31598--31598 []\T1/pcr/m/n/9 (nn <- "\u0126\u0119\u1114\u022d\u2001\u03e2\u0954\u0f3f\u13d3 \u147b\u203c")[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 31609--31609 []\T1/pcr/m/n/9 n2 <- "\U0126\U0119\U1114\U022d\U2001\U03e2\U0954\U0f3f\U13d3\ U147b\U203c"[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 31615--31615 []\T1/pcr/m/n/9 ## https://cran.r-project.org/doc/manuals/r-release/R-lang.htm l#Literal-constants[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 31621--31621 []\T1/pcr/m/n/9 ## nul characters (for terminating strings in C) are not allow ed (parse errors)[] Underfull \vbox (badness 10000) has occurred while \output is active [455] [456] Underfull \hbox (badness 7415) in paragraph at lines 31718--31724 []\T1/ptm/m/n/10 Do \T1/ptm/m/it/10 not \T1/ptm/m/n/10 use []\T1/pcr/m/n/10 R.v ersion$os []\T1/ptm/m/n/10 to test the plat-form the code is run-ning on: use Overfull \hbox (42.18039pt too wide) in paragraph at lines 31742--31742 []\T1/pcr/m/n/9 mtext(R.version.string, side = 1, line = 4, adj = 1) # a usefu l bottom-right note[] [457] Overfull \hbox (6.78088pt too wide) in paragraph at lines 31788--31788 []\T1/pcr/m/n/10 set.seed(seed, kind = NULL, normal.kind = NULL, sample.kind = NULL)[] [458] [459] Underfull \hbox (badness 3713) in paragraph at lines 31931--31942 []\T1/pcr/m/n/10 normal.kind []\T1/ptm/m/n/10 can be []\T1/pcr/m/n/10 "Kinderma n-Ramage"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Buggy Kinderman-Ramage" []\T1/ptm /m/n/10 (not [460] Underfull \hbox (badness 2932) in paragraph at lines 32083--32090 \T1/ptm/m/n/10 Now see [][]$\T1/pcr/m/n/10 https : / / www . math . sci . hiros hima-[]u . ac . jp / ~m-[]mat / MT / VERSIONS / [461] [462] Underfull \hbox (badness 1533) in paragraph at lines 32201--32204 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [463] [464] [465] Overfull \hbox (42.78088pt too wide) in paragraph at lines 32354--32354 [] \T1/pcr/m/n/10 ties.method = c("average", "first", "last", "random", "m ax", "min"))[] Underfull \hbox (badness 1038) in paragraph at lines 32372--32383 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/pcr/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [466] [467] Overfull \hbox (15.18042pt too wide) in paragraph at lines 32520--32520 []\T1/pcr/m/n/9 rapply(X, function(x) x, how = "replace") -> X.; stopifnot(ide ntical(X, X.))[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 32522--32522 []\T1/pcr/m/n/9 rapply(X, deparse, control = "all") # passing extras. argument of deparse()[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 32523--32523 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character", deflt = NA_integer_, h ow = "list")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 32524--32524 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character", deflt = NA_integer_, h ow = "unlist")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 32525--32525 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character", h ow = "unlist")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 32532--32532 []\T1/pcr/m/n/9 rapply(E, nchar, classes = "character", deflt = NA_integer_, h ow = "unlist")[] [468] [469] [470] [471] [472] Overfull \hbox (25.98041pt too wide) in paragraph at lines 32842--32842 []\T1/pcr/m/n/9 ## Bit representation [ sign | exponent | mantissa ] of doubl e prec numbers :[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 32844--32844 []\T1/pcr/m/n/9 bitC <- function(x) noquote(vapply(as.double(x), function(x) { # split one double[] Overfull \hbox (74.58035pt too wide) in paragraph at lines 32854--32854 []\T1/pcr/m/n/9 d2bI <- function(x) vapply(as.double(x), function(x) intToBits (numToInts(x)), raw(64L))[] Overfull \hbox (74.58035pt too wide) in paragraph at lines 32855--32855 []\T1/pcr/m/n/9 d2b <- function(x) vapply(as.double(x), function(x) numToBits(x) , raw(64L))[] Underfull \vbox (badness 10000) has occurred while \output is active [473] Underfull \hbox (badness 6300) in paragraph at lines 32924--32926 []\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr it-ing R Ex-ten-sions' man-ual: [474] Underfull \hbox (badness 4048) in paragraph at lines 32950--32955 []\T1/ptm/m/n/10 Either an ob-ject whose mode will give the mode of the vec-tor to Underfull \hbox (badness 4582) in paragraph at lines 32950--32955 \T1/ptm/m/n/10 be read, or a char-ac-ter vec-tor of length one de-scrib-ing the mode: Underfull \hbox (badness 1824) in paragraph at lines 32950--32955 \T1/ptm/m/n/10 one of []\T1/pcr/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/pcr/m/ n/10 "double"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "integer"[]\T1/ptm/m/n/10 , [] \T1/pcr/m/n/10 "int"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/ 10 , [475] [476] [477] [478] [479] [480] [481] [482] Underfull \hbox (badness 2080) in paragraph at lines 33491--33501 []\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 infoRDS[]\T1/ptm/m/n/10 , an \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 list with el-e-ments []\T1/pcr/m/n/10 version []\T1/ptm/m/n /10 (ver-sion num-ber, cur-rently 2 or 3), Overfull \hbox (4.38043pt too wide) in paragraph at lines 33528--33528 []\T1/pcr/m/n/9 ## or examine the object via a connection, which will be opene d as needed.[] [483] [484] [485] [486] [487] [488] [489] Underfull \hbox (badness 7558) in paragraph at lines 34053--34057 []\T1/pcr/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1968) in paragraph at lines 34063--34065 []\T1/ptm/m/n/10 This help page is based on the TRE doc-u-men-ta-tion and the P OSIX stan-dard, and the [490] Underfull \hbox (badness 10000) in paragraph at lines 34074--34076 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/pcr/m/n/10 https : / / pubs . opengroup . org / onlinepubs / Underfull \hbox (badness 1975) in paragraph at lines 34077--34081 []\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/pc r/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/pcr/m /n/10 https : / / www . [491] [492] [493] [494] [495] Overfull \hbox (4.38043pt too wide) in paragraph at lines 34449--34449 []\T1/pcr/m/n/9 rep(1:4, each = 2, times = 3) # length 24, 3 complete replications[] [496] Underfull \hbox (badness 10000) in paragraph at lines 34520--34524 [][][]\T1/pcr/m/n/10 TRUE[][][] [][]FALSE[][][] [][]NULL[][][] [][]Inf[][][] [] []NaN[][][] [][]NA[][][] [][]NA_integer_[][][] [][]NA_real_[][][] [][]NA_comple x_[][][] [497] [498] [499] Underfull \hbox (badness 2302) in paragraph at lines 34753--34756 []\T1/pcr/m/n/10 signif []\T1/ptm/m/n/10 rounds the val-ues in its first ar-gu- ment to the spec-i-fied num-ber of \T1/ptm/m/it/10 sig-nif-i-cant Underfull \hbox (badness 1824) in paragraph at lines 34753--34756 \T1/ptm/m/n/10 dig-its. Hence, for []\T1/pcr/m/n/10 numeric x[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 signif(x, dig) []\T1/ptm/m/n/10 is the same as []\T1/pcr/m/n/ 10 round(x, dig - [500] [501] Overfull \hbox (12.78088pt too wide) in paragraph at lines 34883--34883 [] \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y ears"))[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 34886--34886 [] \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y ears"),[] [502] Overfull \hbox (12.78088pt too wide) in paragraph at lines 34893--34893 [] \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y ears"),[] [503] [504] [505] [506] [507] [508] Overfull \hbox (66.78088pt too wide) in paragraph at lines 35341--35341 [] \T1/pcr/m/n/10 useHash = (n > 1e+07 && !replace && is.null(prob) && size <= n/2))[] [509] [510] [511] [512] [513] [514] [515] Overfull \hbox (12.78088pt too wide) in paragraph at lines 35782--35782 [] \T1/pcr/m/n/10 fileEncoding = "", encoding = "unknown", text, skipNul = FALSE)[] [516] Underfull \hbox (badness 1158) in paragraph at lines 35886--35891 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [517] [518] Overfull \hbox (15.18042pt too wide) in paragraph at lines 36072--36072 []\T1/pcr/m/n/9 cat("TITLE extra line", "2 3 5 7", "11 13 17", file = "ex.data ", sep = "\n") [519] [520] [521] [522] Underfull \hbox (badness 4752) in paragraph at lines 36332--36335 []\T1/ptm/m/n/10 The fourth form gen-er-ates the in-te-ger se-quence []\T1/pcr/ m/n/10 1, 2, ..., length(along.with)[]\T1/ptm/m/n/10 . Underfull \hbox (badness 5563) in paragraph at lines 36336--36342 []\T1/ptm/m/n/10 The fifth form gen-er-ates the se-quence []\T1/pcr/m/n/10 1, 2 , ..., length(from) []\T1/ptm/m/n/10 (as if ar-gu-ment [523] Underfull \hbox (badness 1845) in paragraph at lines 36445--36448 []\T1/ptm/m/n/10 A vec-tor of class []\T1/pcr/m/n/10 "Date"[]\T1/ptm/m/n/10 . T ype []\T1/pcr/m/n/10 "[][]integer[][][]" []\T1/ptm/m/n/10 is of-ten pre-served on pur-pose, sav-ing [524] Overfull \hbox (31.3804pt too wide) in paragraph at lines 36466--36466 []\T1/pcr/m/n/9 ## find all 7th of the month _strictly_ inside two dates, the last being a 7th.[] [525] [526] [527] [528] [529] [530] [531] Underfull \hbox (badness 6094) in paragraph at lines 36963--36967 []\T1/pcr/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in- te-ger con-nec-tion de-scrip-tors for use Underfull \hbox (badness 6559) in paragraph at lines 36963--36967 \T1/ptm/m/n/10 with []\T1/pcr/m/n/10 getConnection[]\T1/ptm/m/n/10 , cor-re-spo nd-ing to the row names of the ta-ble re-turned by [532] [533] Underfull \hbox (badness 3826) in paragraph at lines 37054--37065 []\T1/ptm/m/n/10 In Win-dows, com-mand line in-ter-pre-ta-tion is done by the a p-pli-ca-tion as well as the Underfull \hbox (badness 3492) in paragraph at lines 37054--37065 \T1/ptm/m/n/10 shell. It may de-pend on the com-piler used: Mi-crosoft's rules for the C run-time Underfull \hbox (badness 10000) in paragraph at lines 37054--37065 \T1/ptm/m/n/10 are given at [][]$\T1/pcr/m/n/10 https : / / learn . microsoft . com / en-[]us / cpp / c-[]language / Underfull \hbox (badness 1635) in paragraph at lines 37054--37065 \T1/pcr/m/n/10 parsing-[]c-[]command-[]line-[]arguments ? view = msvc-[]160$[][ ]\T1/ptm/m/n/10 . It may de-pend on the [534] [535] [536] [537] [538] [539] [540] [541] Overfull \hbox (66.78088pt too wide) in paragraph at lines 37606--37606 [] \T1/pcr/m/n/10 method = c("auto", "shell", "quick", "radix"), index .return = FALSE)[] [542] [543] [544] [545] Overfull \hbox (9.78043pt too wide) in paragraph at lines 37897--37897 []\T1/pcr/m/n/9 sort_by.data.frame(mtcars, ~ list(am, -mpg)) |> subset(select = c(am, mpg))[] [546] Overfull \hbox (6.78088pt too wide) in paragraph at lines 37935--37935 [] \T1/pcr/m/n/10 print. = TRUE, echo = TRUE, max.deparse.length = Inf,[] Overfull \hbox (42.78088pt too wide) in paragraph at lines 37937--37937 [] \T1/pcr/m/n/10 deparseCtrl = c("keepInteger", "showAttributes" , "keepNA"),[] [547] Underfull \hbox (badness 4954) in paragraph at lines 37981--37987 [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 vec-tor, passed as []\T1/ pcr/m/n/10 control []\T1/ptm/m/n/10 to [][][]\T1/pcr/m/n/10 deparse[][][]()[]\T 1/ptm/m/n/10 , see also Underfull \hbox (badness 5050) in paragraph at lines 37981--37987 [][][]\T1/pcr/m/n/10 .deparseOpts[][][][]\T1/ptm/m/n/10 . In \T1/phv/m/n/10 R \ T1/ptm/m/n/10 ver-sion <= 3.3.x, this was hard-coded to [548] Overfull \hbox (20.58041pt too wide) in paragraph at lines 38089--38089 []\T1/pcr/m/n/9 ## (all should look "as if on top level", e.g. non-assignments should print:)[] [549] [550] [551] [552] [553] Overfull \hbox (4.38043pt too wide) in paragraph at lines 38452--38452 []\T1/pcr/m/n/9 ### Calculate \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 z-scores\TS1/pcr/m /n/9 ' \T1/pcr/m/n/9 by group (standardize to mean zero, variance one)[] [554] Overfull \hbox (4.38043pt too wide) in paragraph at lines 38467--38467 []\T1/pcr/m/n/9 ## Notice that assignment form is not used since a variable is being added[] [555] [556] Underfull \hbox (badness 10000) in paragraph at lines 38693--38695 [][][]$\T1/pcr/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / [557] [558] [559] [560] Overfull \hbox (12.78088pt too wide) in paragraph at lines 38919--38919 []\T1/pcr/m/n/10 srcfile(filename, encoding = getOption("encoding"), Enc = "un known") Overfull \hbox (12.78088pt too wide) in paragraph at lines 38920--38920 []\T1/pcr/m/n/10 srcfilecopy(filename, lines, timestamp = Sys.time(), isFile = FALSE)[] [561] [562] Underfull \hbox (badness 2828) in paragraph at lines 39119--39127 []\T1/ptm/m/n/10 Stack over-flow er-rors can be caught and han-dled by ex-it-in g han-dlers es-tab-lished with [563] [564] Overfull \hbox (63.78036pt too wide) in paragraph at lines 39250--39250 []\T1/pcr/m/n/9 startsWith(search(), "package:") # typically at least two FALS E, nowadays often three [565] [566] Underfull \hbox (badness 6110) in paragraph at lines 39346--39356 []\T1/ptm/m/n/10 A func-tion []\T1/pcr/m/n/10 .First []\T1/ptm/m/n/10 (and [][] []\T1/pcr/m/n/10 .Last[][][][]\T1/ptm/m/n/10 ) can be de-fined in ap-pro-pri-at e `\T1/pcr/m/n/10 .Rprofile\T1/ptm/m/n/10 ' or Underfull \hbox (badness 2635) in paragraph at lines 39346--39356 \T1/ptm/m/n/10 `\T1/pcr/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' files or have been saved in `\T1/pcr/m/n/10 .RData\T1/ptm/m/n/10 '. If you want a dif-fer-ent Underfull \hbox (badness 1237) in paragraph at lines 39346--39356 \T1/ptm/m/n/10 set of pack-ages than the de-fault ones when you start, in-sert a call to [][][]\T1/pcr/m/n/10 options[][][] []\T1/ptm/m/n/10 in the Underfull \hbox (badness 1231) in paragraph at lines 39346--39356 \T1/pcr/m/n/10 = character()) []\T1/ptm/m/n/10 will at-tach no ex-tra pack-ages on startup (only the \T1/ptm/b/n/10 base \T1/ptm/m/n/10 pack-age) (or Underfull \hbox (badness 1112) in paragraph at lines 39346--39356 \T1/ptm/m/n/10 set []\T1/pcr/m/n/10 R_DEFAULT_PACKAGES=NULL []\T1/ptm/m/n/10 as an en-vi-ron-ment vari-able be-fore run-ning \T1/phv/m/n/10 R\T1/ptm/m/n/10 ). Us-ing Underfull \hbox (badness 10000) in paragraph at lines 39402--39408 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/pcr/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 39402--39408 \T1/ptm/m/n/10 and `\T1/pcr/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1496) in paragraph at lines 39402--39408 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/pcr/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/pcr/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be [567] Underfull \hbox (badness 1460) in paragraph at lines 39417--39424 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/pcr/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 39417--39424 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 39417--39424 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Overfull \hbox (4.38043pt too wide) in paragraph at lines 39477--39477 []\T1/pcr/m/n/9 # Variable expansion in double quotes, string literals with ba ckslashes in[] [568] [569] Underfull \hbox (badness 5985) in paragraph at lines 39564--39567 []\T1/ptm/m/n/10 The de-fault han-dler stores the er-ror mes-sage in a buffer; it can be re-trieved by Underfull \hbox (badness 1460) in paragraph at lines 39564--39567 []\T1/pcr/m/n/10 geterrmessage()[]\T1/ptm/m/n/10 . It also stores a trace of th e call stack that can be re-trieved by [570] Underfull \hbox (badness 1484) in paragraph at lines 39652--39656 []\T1/ptm/m/n/10 alternative to []\T1/pcr/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/pcr/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [571] Overfull \hbox (60.78088pt too wide) in paragraph at lines 39712--39712 [] \T1/pcr/m/n/10 assert <- function(exprs) eval.parent(substitute(stopifnot(e xprs = exprs))) Overfull \hbox (9.78043pt too wide) in paragraph at lines 39738--39738 []\T1/pcr/m/n/9 stopifnot(all.equal(pi, 3.141593), 2 < 2, (1:10 < 12), "a" < "b") |> try()[] [572] Overfull \hbox (25.98041pt too wide) in paragraph at lines 39754--39754 []\T1/pcr/m/n/9 stopifnot(all.equal(rep(list(pi),4), list(3.1, 3.14, 3.141, 3. 1415))) |> try()[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 39762--39762 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 {Yes, learn how to use do.c all(substitute, ...) in a powerful manner !!}[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 39764--39764 []\T1/pcr/m/n/9 bdy <- do.call(substitute, list(bdy, list(stopifnot = quote(warnifnot))))[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 39765--39765 []\T1/pcr/m/n/9 bdy[[N-1]] <- do.call(substitute, list(bdy[[N-1]], list(stop = quote(warning))))[] [573] Underfull \hbox (badness 1436) in paragraph at lines 39829--39833 []\T1/ptm/m/n/10 integer de-ter-min-ing the []\T1/pcr/m/n/10 format()[]\T1/ptm/ m/n/10 ing of sec-onds when needed. Note [574] [575] [576] [577] [578] Overfull \hbox (8.42813pt too wide) in paragraph at lines 40235--40235 []\T1/pcr/m/n/9 ## time with fractional seconds (setting \TS1/cmtt/m/n/9 `\T1/ pcr/m/n/9 tz = ..\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 for reproducible output)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 40237--40237 []\T1/pcr/m/n/9 z3 # prints without fractional seconds by default, digits.sec = NULL ("= 0")[] [579] Overfull \hbox (9.78043pt too wide) in paragraph at lines 40270--40270 []\T1/pcr/m/n/9 format(s1 <- seq.Date(as.Date(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 19 78-01-01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), by = \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 day \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 , len = 7), "%a")[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 40271--40271 []\T1/pcr/m/n/9 format(s2 <- seq.Date(as.Date(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 20 00-01-01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), by = \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 mon th\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 , len = 12), "%b")[] [580] Overfull \hbox (0.78088pt too wide) in paragraph at lines 40383--40383 [] \T1/pcr/m/n/10 add the string to the left of the match to the ou tput.[] [581] [582] [583] [584] Overfull \hbox (6.78088pt too wide) in paragraph at lines 40661--40661 [] \T1/pcr/m/n/10 exdent = 0, prefix = "", simplify = TRUE, initial = p refix)[] [585] Overfull \hbox (4.38043pt too wide) in paragraph at lines 40705--40705 []\T1/pcr/m/n/9 x <- paste(readLines(file.path(R.home("doc"), "THANKS")), coll apse = "\n")[] [586] [587] [588] [589] [590] [591] [592] Overfull \hbox (52.98038pt too wide) in paragraph at lines 41155--41155 []\T1/pcr/m/n/9 ## In fact, you can pass vectors into several arguments, and e verything gets added.[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 41158--41158 []\T1/pcr/m/n/9 ## If there are missing values, the sum is unknown, i.e., also missing, ....[] [593] Overfull \hbox (36.78088pt too wide) in paragraph at lines 41198--41198 []\T1/pcr/m/n/10 format(x, digits = max(3L, getOption("digits") - 3L), zdigits = 4L, ...)[] Overfull \hbox (36.78088pt too wide) in paragraph at lines 41200--41200 [] \T1/pcr/m/n/10 print(x, digits = max(3L, getOption("digits") - 3L), zdigits = 4L, ...)[] [594] Overfull \hbox (4.38043pt too wide) in paragraph at lines 41270--41270 []\T1/pcr/m/n/9 summary(attenu, digits = 4) #-> summary.data.frame(...), defau lt precision [595] [596] [597] [598] [599] Overfull \hbox (31.3804pt too wide) in paragraph at lines 41590--41590 [] \T1/pcr/m/n/9 cat(ch,":", switch(EXPR = ch, a =, A = 1, b = 2:3, "Otherw ise: last"),"\n")[] [600] [601] [602] Overfull \hbox (20.58041pt too wide) in paragraph at lines 41800--41800 []\T1/pcr/m/n/9 if(.Platform$OS.type == "unix") ## on Unix-alikes such Linux, macOS, FreeBSD:[] Underfull \hbox (badness 2293) in paragraph at lines 41830--41836 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de- Underfull \hbox (badness 1237) in paragraph at lines 41830--41836 \T1/ptm/m/n/10 tails of wild-cards ex-pan-sion, see your sys-tem's doc-u-men-ta -tion on the []\T1/pcr/m/n/10 glob []\T1/ptm/m/n/10 sys-tem call. [603] Underfull \hbox (badness 4792) in paragraph at lines 41848--41853 []\T1/ptm/m/n/10 If a file-name starts with []\T1/pcr/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple Underfull \hbox (badness 1107) in paragraph at lines 41848--41853 []\T1/pcr/m/n/10 Sys.glob("*.RData") []\T1/ptm/m/n/10 may or may not match `\T1 /pcr/m/n/10 .RData\T1/ptm/m/n/10 ' but will not usu-ally match [604] [605] [606] [607] Underfull \hbox (badness 10000) in paragraph at lines 42140--42144 []\T1/pcr/m/n/10 sys.status() []\T1/ptm/m/n/10 re-turns a list with com-po-nent s []\T1/pcr/m/n/10 sys.calls[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sys.parents []\ T1/ptm/m/n/10 and Underfull \hbox (badness 1584) in paragraph at lines 42155--42158 []\T1/pcr/m/n/10 sys.call []\T1/ptm/m/n/10 re-turns a call, []\T1/pcr/m/n/10 sy s.function []\T1/ptm/m/n/10 a func-tion def-i-ni-tion, and []\T1/pcr/m/n/10 sys .frame []\T1/ptm/m/n/10 and [608] [609] Overfull \hbox (25.98041pt too wide) in paragraph at lines 42293--42293 []\T1/pcr/m/n/9 is.symlink <- function(paths) isTRUE(nzchar(Sys.readlink(paths ), keepNA=TRUE))[] [610] Overfull \hbox (19.22812pt too wide) in paragraph at lines 42373--42373 []\T1/pcr/m/n/9 print(Sys.setenv(R_TEST = "testit", "A+C" = 123)) # \TS1/cmtt /m/n/9 `\T1/pcr/m/n/9 A+C\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 could also be used [611] [612] [613] Underfull \hbox (badness 1082) in paragraph at lines 42518--42521 []\T1/ptm/m/n/10 logical. If []\T1/pcr/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see Underfull \hbox (badness 10000) in paragraph at lines 42545--42547 [][][]\T1/pcr/m/n/10 source[][][][]\T1/ptm/m/n/10 , and [][][]\T1/pcr/m/n/10 lo adNamespace[][][] []\T1/ptm/m/n/10 which is called from [][][]\T1/pcr/m/n/10 li brary[][][](.) []\T1/ptm/m/n/10 and uses [614] [615] [616] Underfull \hbox (badness 1038) in paragraph at lines 42712--42715 []\T1/ptm/m/n/10 a log-i-cal (not []\T1/pcr/m/n/10 NA[]\T1/ptm/m/n/10 ) in-di-c at-ing whether mes-sages writ-ten to `\T1/pcr/m/n/10 stdout\T1/ptm/m/n/10 ' or [617] [618] [619] [620] [621] [622] Underfull \hbox (badness 1442) in paragraph at lines 43096--43100 \T1/ptm/m/n/10 con-sider it to be piped or redi-rected: []\T1/pcr/m/n/10 stdout = TRUE []\T1/ptm/m/n/10 uses a pipe whereas []\T1/pcr/m/n/10 stdout = [623] [624] [625] Underfull \hbox (badness 4096) in paragraph at lines 43354--43357 []\T1/ptm/m/n/10 Use [][][]\T1/pcr/m/n/10 ftable[][][] []\T1/ptm/m/n/10 for pri nt-ing (and more) of mul-ti-di-men-sional ta-bles. [][][]\T1/pcr/m/n/10 margin. table[][][][]\T1/ptm/m/n/10 , [626] [627] Underfull \hbox (badness 7888) in paragraph at lines 43469--43473 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/pcr/m/n/10 bin []\T1/ptm/m/n/10 can have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/pcr/ m/n/10 length(bin) > [628] [629] [630] [631] Overfull \hbox (63.78036pt too wide) in paragraph at lines 43731--43731 [] \T1/pcr/m/n/9 matrix(c(1L, 2L, NA, 3L), 2, dimnames = list(c("1" , "2"), c("A", "B")))),[] Overfull \hbox (30.0281pt too wide) in paragraph at lines 43733--43733 [] \T1/pcr/m/n/9 array(list(\TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 2\TS1/cm tt/m/n/9 ` \T1/pcr/m/n/9 = structure(c(2, 5.75, 9.5, 13.25, 17), names = nq),[] Overfull \hbox (55.67578pt too wide) in paragraph at lines 43735--43735 [] \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 4\TS1/cmtt/m/n/9 ` \T1/pcr/m /n/9 = NULL, \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 5\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 = NULL), dim=4, dimnames=list(as.character(2:5)))))[] Underfull \hbox (badness 10000) in paragraph at lines 43748--43750 []\T1/pcr/m/n/10 removeTaskCallback []\T1/ptm/m/n/10 un-registers a func-tion t hat was reg-is-tered ear-lier via [632] [633] [634] Underfull \hbox (badness 3872) in paragraph at lines 43947--43950 []\T1/ptm/m/n/10 Duncan Tem-ple Lang (2001) \T1/ptm/m/it/10 Top-level Task Call -backs in R\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / developer . [635] [636] [637] [638] [639] [640] [641] Underfull \hbox (badness 1655) in paragraph at lines 44436--44443 \T1/ptm/m/n/10 may also be known as `[]\T1/pcr/m/n/10 GB[]\T1/ptm/m/n/10 ', `[] \T1/pcr/m/n/10 GB-Eire[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 Europe/Belfast[]\T1 /ptm/m/n/10 ', `[]\T1/pcr/m/n/10 Europe/Guernsey[]\T1/ptm/m/n/10 ', Underfull \hbox (badness 2253) in paragraph at lines 44444--44449 []\T1/pcr/m/n/10 OlsonNames []\T1/ptm/m/n/10 re-turns a char-ac-ter vec-tor, se e the ex-am-ples for typ-i-cal cases. It may Underfull \hbox (badness 1655) in paragraph at lines 44444--44449 \T1/ptm/m/n/10 have an at-tribute []\T1/pcr/m/n/10 "Version"[]\T1/ptm/m/n/10 , some-thing like `[]\T1/pcr/m/n/10 "2023a"[]\T1/ptm/m/n/10 '. (It does on sys-te ms us-ing [642] Underfull \hbox (badness 4467) in paragraph at lines 44498--44507 []\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 OlsonNames []\T1/ptm/m/n/10 re- turns the time-zone names known to the cur-rently se- Underfull \hbox (badness 3954) in paragraph at lines 44498--44507 \T1/ptm/m/n/10 lected Ol-son/IANA database. The system-specific lo-ca-tion in t he file sys-tem varies, [643] Underfull \hbox (badness 1337) in paragraph at lines 44595--44603 \T1/ptm/m/n/10 a file `\T1/pcr/m/n/10 localtime\T1/ptm/m/n/10 ', usu-ally un-de r `\T1/pcr/m/n/10 /etc\T1/ptm/m/n/10 ' (but pos-si-bly un-der `\T1/pcr/m/n/10 / usr/local/etc\T1/ptm/m/n/10 ' or Underfull \hbox (badness 10000) in paragraph at lines 44604--44607 []\T1/ptm/m/n/10 `Because the time zone iden-ti-fier is ex-tracted from the sym -link tar-get name of [644] Underfull \hbox (badness 3460) in paragraph at lines 44663--44666 [][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / data . iana . org / Underfull \hbox (badness 4429) in paragraph at lines 44667--44669 [][][]$\T1/pcr/m/n/10 https : / / data . iana . org / time-[]zones / theory . h tml$[][] \T1/ptm/m/n/10 for the `rules' of the Ol- Overfull \hbox (31.3804pt too wide) in paragraph at lines 44676--44676 []\T1/pcr/m/n/9 ## typically some acronyms/aliases such as "UTC", "NZ", "MET", "Eire", ..., but[] [645] [646] [647] [648] [649] Overfull \hbox (15.18042pt too wide) in paragraph at lines 45017--45017 []\T1/pcr/m/n/9 trace(pt, tracer = quote(cat(sprintf("tracing pt(*, ncp = %.15 g)\n", ncp))),[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 45019--45019 []\T1/pcr/m/n/9 power.t.test(20, 1, power=0.8, sd=NULL) ##--> showing the ncp root finding:[] [650] [651] Overfull \hbox (84.78088pt too wide) in paragraph at lines 45116--45116 [] \T1/pcr/m/n/10 getOption("deparse .max.lines", -1L)))[] Overfull \hbox (84.78088pt too wide) in paragraph at lines 45118--45118 [] \T1/pcr/m/n/10 getOption("deparse .max.lines", -1L)))[] [652] [653] [654] Underfull \hbox (badness 6542) in paragraph at lines 45392--45394 []\T1/pcr/m/n/10 cospi(x)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sinpi(x)[]\T1/ptm/ m/n/10 , and []\T1/pcr/m/n/10 tanpi(x)[]\T1/ptm/m/n/10 , com-pute []\T1/pcr/m/n /10 cos(pi*x)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sin(pi*x)[]\T1/ptm/m/n/10 , an d [655] [656] Overfull \hbox (30.78088pt too wide) in paragraph at lines 45511--45511 []\T1/pcr/m/n/10 trimws(x, which = c("both", "left", "right"), whitespace = "[ \t\r\n]") [657] Underfull \hbox (badness 1708) in paragraph at lines 45579--45587 []\T1/pcr/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 3713) in paragraph at lines 45579--45587 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/pcr/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [658] Underfull \hbox (badness 4859) in paragraph at lines 45619--45624 [][][]\T1/pcr/m/n/10 options[][][] []\T1/ptm/m/n/10 for set-ting er-ror han-dle rs and sup-press-ing the print-ing of er-ror mes-sages; [659] Underfull \hbox (badness 3895) in paragraph at lines 45681--45694 []\T1/ptm/m/n/10 A char-ac-ter string. The pos-si-ble val-ues are listed in the struc-ture []\T1/pcr/m/n/10 TypeTable []\T1/ptm/m/n/10 in Underfull \hbox (badness 1303) in paragraph at lines 45681--45694 \T1/ptm/m/n/10 `\T1/pcr/m/n/10 src/main/util.c\T1/ptm/m/n/10 '. Cur-rent val-ue s are the vec-tor types []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/ m/n/10 "integer"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 2452) in paragraph at lines 45681--45694 []\T1/pcr/m/n/10 "promise"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "object"[]\T1/ptm /m/n/10 , []\T1/pcr/m/n/10 "language"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "char" []\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "..."[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "a ny"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "expression"[]\T1/ptm/m/n/10 , [660] [661] [662] [663] [664] Overfull \hbox (9.78043pt too wide) in paragraph at lines 46034--46034 []\T1/pcr/m/n/9 ll <- list(as.name("sinc"), quote( a + b ), 1:10, letters, exp ression(1+x))[] [665] [666] [667] Underfull \hbox (badness 1137) in paragraph at lines 46173--46180 []\T1/ptm/m/n/10 When a func-tion call-ing []\T1/pcr/m/n/10 UseMethod("fun") [] \T1/ptm/m/n/10 is ap-plied to an ob-ject with class vec-tor [668] [669] [670] [671] [672] Overfull \hbox (4.38043pt too wide) in paragraph at lines 46552--46552 []\T1/pcr/m/n/9 (xx <- intToUtf8(x, , TRUE)) # will only display in some local es and fonts[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 46561--46561 []\T1/pcr/m/n/9 system(paste("od -x", foo)) # 2-byte units, correct on little- endian platforms[] [673] Underfull \hbox (badness 1721) in paragraph at lines 46623--46640 [][][]\T1/pcr/m/n/10 file.rename[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 f ile.symlink[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 dir.create[][][][]\ T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 dir.exists[][][][]\T1/ptm/m/n/10 , [][][]\ T1/pcr/m/n/10 normalizePath[][][][]\T1/ptm/m/n/10 , [674] Overfull \hbox (36.7804pt too wide) in paragraph at lines 46725--46725 []\T1/pcr/m/n/9 try( substr(x, 1,1) ) # gives \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 in valid multibyte string\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 error in a UTF-8 locale[] [675] Underfull \hbox (badness 1803) in paragraph at lines 46788--46791 []\T1/ptm/m/n/10 The atomic modes are []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/1 0 , []\T1/pcr/m/n/10 "integer"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "numeric" []\ T1/ptm/m/n/10 (syn-onym []\T1/pcr/m/n/10 "double"[]\T1/ptm/m/n/10 ), Underfull \hbox (badness 3471) in paragraph at lines 46792--46798 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 mode = "any"[]\T1/ptm/m/n/10 , []\T1/pcr/m /n/10 is.vector []\T1/ptm/m/n/10 may re-turn []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/ n/10 for the atomic modes, [][][]\T1/pcr/m/n/10 list[][][] []\T1/ptm/m/n/10 and [676] [677] [678] Underfull \hbox (badness 1014) in paragraph at lines 47020--47023 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me -di-ately, even if [679] [680] Overfull \hbox (36.78088pt too wide) in paragraph at lines 47129--47129 [] \T1/pcr/m/n/10 header = ngettext(n, "Warning message:\n", "Warning mes sages:\n"),[] [681] Overfull \hbox (4.38043pt too wide) in paragraph at lines 47206--47206 []\T1/pcr/m/n/9 ## at the end prints all three warnings, from the \TS1/pcr/m/n /9 '\T1/pcr/m/n/9 option(warn = 0)\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 above[] Overfull \hbox (90.78033pt too wide) in paragraph at lines 47214--47214 []\T1/pcr/m/n/9 x <- 1:36; for(n in 1:13) for(m in 1:12) A <- matrix(x, n,m) # There were 105 warnings ...[] [682] Underfull \hbox (badness 1783) in paragraph at lines 47279--47281 []\T1/pcr/m/n/10 weekdays []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 months []\T1/pt m/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e., [683] Overfull \hbox (25.98041pt too wide) in paragraph at lines 47309--47309 []\T1/pcr/m/n/9 ## Show how easily you get month, day, year, day (of {month, w eek, yr}), ... :[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 47321--47321 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 Even simpler: Date -> Matrix - dropping time info {sec,min,hour, isdst}[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 47324--47324 []\T1/pcr/m/n/9 d2mat(seq(as.Date("2000-02-02"), by=1, length.out=30)) # has R 1.0.0\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s release date[] [684] Underfull \hbox (badness 10000) in paragraph at lines 47386--47391 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 arr.ind == TRUE []\T1/ptm/m/n/10 and []\T1 /pcr/m/n/10 x []\T1/ptm/m/n/10 is an [][][]\T1/pcr/m/n/10 array[][][] []\T1/ptm /m/n/10 (has a [][][]\T1/pcr/m/n/10 dim[][][] []\T1/ptm/m/n/10 at-tribute), the re-sult is Underfull \hbox (badness 2564) in paragraph at lines 47386--47391 []\T1/pcr/m/n/10 arrayInd(which(x), dim(x), dimnames(x))[]\T1/ptm/m/n/10 , name ly a ma-trix whose rows each [685] Underfull \hbox (badness 2818) in paragraph at lines 47484--47490 []\T1/ptm/m/n/10 For a [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 vec- tor []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 with both []\T1/pcr/m/n/10 FALSE []\T1/ ptm/m/n/10 and []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 val-ues, []\T1/pcr/m/n/10 which.min(x) []\T1/ptm/m/n/10 and [686] Overfull \hbox (15.18042pt too wide) in paragraph at lines 47519--47519 []\T1/pcr/m/n/9 ## Find the first occurrence, i.e. the first TRUE, if there is at least one:[] [687] [688] [689] [690] [691] [692] [693] Underfull \hbox (badness 2846) in paragraph at lines 48015--48019 []\T1/pcr/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [694] Overfull \hbox (4.38043pt too wide) in paragraph at lines 48055--48055 []\T1/pcr/m/n/9 .packages(all.available = TRUE) # return all available as char acter vector[] Underfull \hbox (badness 3209) in paragraph at lines 48076--48080 []\T1/pcr/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da rd' reg-exps, in-clud-ing el-e-ments named [695]) (./compiler-pkg.tex [696] Chapter 2. [697] Underfull \hbox (badness 2884) in paragraph at lines 107--121 []\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 options []\T1/ptm/m/n/10 ar-gu-ment can b e used to con-trol com-piler op-er-a-tion. There are cur- Underfull \hbox (badness 10000) in paragraph at lines 107--121 \T1/ptm/m/n/10 rently four op-tions: []\T1/pcr/m/n/10 optimize[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 suppressAll[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 suppressUndef ined[]\T1/ptm/m/n/10 , and [698] [699] [700]) (./datasets-pkg.tex Chapter 3. [701] [702] [703] [704] [705] Overfull \hbox (15.18042pt too wide) in paragraph at lines 297--297 [] \T1/pcr/m/n/9 plot(ff, data = anscombe, col = "red", pch = 21, bg = "orang e", cex = 1.2,[] [706] Overfull \hbox (4.38043pt too wide) in paragraph at lines 375--375 []\T1/pcr/m/n/9 coplot(accel ~ dist | as.factor(event), data = attenu, show.gi ven = FALSE)[] [707] [708] [709] Overfull \hbox (4.38043pt too wide) in paragraph at lines 613--613 [] \T1/pcr/m/n/9 start = c(lrc = log(.35)), algorithm = "plinear", t race = TRUE)[] [710] [711] Underfull \hbox (badness 4779) in paragraph at lines 700--703 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr oupedData", "groupedData", [712] [713] Underfull \hbox (badness 4779) in paragraph at lines 832--835 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr oupedData", "groupedData", [714] [715] Underfull \hbox (badness 1097) in paragraph at lines 1034--1038 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [716] [717] Underfull \hbox (badness 4779) in paragraph at lines 1149--1152 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr oupedData", "groupedData", [718] [719] [720] [721] [722] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1463--1463 []\T1/pcr/m/n/9 plot(names(te), te, type = "h", main = f.tit, xlab = "Eruption time (sec)")[] [723] [724] Underfull \hbox (badness 10000) in paragraph at lines 1548--1551 []\T1/ptm/m/n/10 Finally, []\T1/pcr/m/n/10 freeny []\T1/ptm/m/n/10 is a data fr ame with vari-ables []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lag.q uarterly.revenue[]\T1/ptm/m/n/10 , Underfull \hbox (badness 2903) in paragraph at lines 1548--1551 []\T1/pcr/m/n/10 price.index[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 income.level[]\ T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 market.potential []\T1/ptm/m/n/10 ob-taine d from the above [725] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1641--1641 [] \T1/pcr/m/n/9 xlab = "Hip Angle", ylab = "Knee Angle", main = "\TS1/pcr /m/n/9 '\T1/pcr/m/n/9 gait\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 data : Boy 1")[] Overfull \hbox (112.38031pt too wide) in paragraph at lines 1643--1643 []\T1/pcr/m/n/9 matlines(gait[, -1, 1], gait[, -1, 2], type = "l", lty = 1, co l = adjustcolor("thistle", 1/3))[] [726] [727] [728] Underfull \hbox (badness 4779) in paragraph at lines 1809--1812 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr oupedData", "groupedData", [729] [730] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1907--1907 []\T1/pcr/m/n/9 model1 <- glm(case ~ spontaneous+induced, data = infert, famil y = binomial())[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1915--1915 [] \T1/pcr/m/n/9 model3 <- clogit(case ~ spontaneous+induced+strata(stratum), data = infert)[] [731] [732] Overfull \hbox (25.98041pt too wide) in paragraph at lines 2032--2032 []\T1/pcr/m/n/9 ## Iris versicolor "differs twice as much from I. setosa as fr om I. virginica"[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2037--2037 []\T1/pcr/m/n/9 ## equivalence of legacy array (iris3) and data.frame (iris) r epresentation[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2041--2041 [] \T1/pcr/m/n/9 sub(" W.",".Width", dn i3[[2]])))),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2042--2042 [] \T1/pcr/m/n/9 Species = gl(3, 50, labels = sub("S", "s", sub("V", "v", d ni3[[3]]))))[] [733] [734] [735] Underfull \hbox (badness 4779) in paragraph at lines 2245--2248 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr oupedData", "groupedData", [736] [737] [738] [739] [740] [741] [742] [743] [744] [745] Underfull \hbox (badness 4779) in paragraph at lines 2810--2813 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr oupedData", "groupedData", [746] [747] [748] [749] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3084--3084 []\T1/pcr/m/n/9 plot(bill_dep ~ bill_len, data = penguins, pch = sym[sex], col = pal[species])[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 3092--3092 []\T1/pcr/m/n/9 m <- glm(sex ~ bill_len + bill_dep + body_mass, data = adelie, family = binomial)[] [750] [751] [752] [753] [754] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3420--3420 []\T1/pcr/m/n/9 pairs(quakes, main = "Fiji Earthquakes, N = 1000", cex.main = 1.2, pch = ".")[] [755] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3467--3467 []\T1/pcr/m/n/9 myrandu <- matrix(NA_real_, 400, 3, dimnames = list(NULL, c("x ","y","z")))[] [756] [757] [758] [759] [760] Overfull \hbox (47.58038pt too wide) in paragraph at lines 3773--3773 []\T1/pcr/m/n/9 ## Alaska and Hawaii are placed just off the West Coast (for c ompact map drawing):[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 3775--3775 []\T1/pcr/m/n/9 ## state.center2 := version of state.center with "correct" coo rdinates for AK & HI:[] Overfull \hbox (85.38034pt too wide) in paragraph at lines 3776--3776 []\T1/pcr/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis t.html#Geographic%20Centers[] Underfull \hbox (badness 1259) in paragraph at lines 3833--3836 \T1/ptm/m/n/10 Av. Cir-cu-laire, 3, B-1180 BRUS-SELS Cur-rently at [][]$\T1/pcr /m/n/10 https : / / www . sidc . be / SILSO / [761] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3883--3883 []\T1/pcr/m/n/9 ## How to recreate the "old" sunspot.month (R <= 3.0.3) =: sun spot.month.0[] [762] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3936--3936 []\T1/pcr/m/n/9 (t2 <- c(min( end(sm)[1],end(sy)[1]), 12)) # Dec 1983 (will n ot be updated!)[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3940--3940 [] \T1/pcr/m/n/9 ## The yearly series *is* close to the averages of t he monthly one:[] [763] [764] [765] Underfull \hbox (badness 4779) in paragraph at lines 4088--4091 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr oupedData", "groupedData", [766] [767] [768] Overfull \hbox (9.78043pt too wide) in paragraph at lines 4297--4297 [] \T1/pcr/m/n/9 xlab = "ToothGrowth data: length vs dose, given type of supplement")[] Underfull \hbox (badness 10000) in paragraph at lines 4333--4335 []\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/pcr/m/n/10 h ttps : / / web . archive . org / web / Underfull \hbox (badness 10000) in paragraph at lines 4333--4335 \T1/pcr/m/n/10 20110523225828 / http : / / www . ltrr . arizona . edu / ~hallma n / sitephotos / [769] [770] [771] [772] [773] [774] [775] [776] [777] [778] [779] [780] [781] [782]) (./grDevices-pkg.tex Chapter 4. [783] [784] [785] [786] Underfull \hbox (badness 4752) in paragraph at lines 299--304 []\T1/ptm/m/n/10 Apart from that, []\T1/pcr/m/n/10 axisTicks() []\T1/ptm/m/n/10 just calls the C func-tion []\T1/pcr/m/n/10 CreateAtVector() []\T1/ptm/m/n/10 in Underfull \hbox (badness 2865) in paragraph at lines 299--304 \T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R\T1/pcr/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack -age func-tion [787] Overfull \hbox (9.78043pt too wide) in paragraph at lines 351--351 []\T1/pcr/m/n/9 aX(2, print(ya <- axisTicks(pu[3:4], log = TRUE))) # 10 20 50 100 (y axis)[] [788] [789] [790] Overfull \hbox (6.78088pt too wide) in paragraph at lines 537--537 []\T1/pcr/m/n/10 cairo_pdf(filename = if(onefile) "Rplots.pdf" else "Rplot%03d .pdf",[] [791] [792] [793] [794] [795] [796] Underfull \hbox (badness 2245) in paragraph at lines 919--924 []\T1/ptm/m/n/10 Hexadecimal string col-ors can be in the long hex-adec-i-mal f orm (e.g., []\T1/pcr/m/n/10 "#rrggbb" []\T1/ptm/m/n/10 or [797] Overfull \hbox (31.3804pt too wide) in paragraph at lines 983--983 []\T1/pcr/m/n/9 names(clmult) <- sapply(clmult, function(x) paste(crgb[,x[1]], collapse = ","))[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 990--990 [] \T1/pcr/m/n/9 lattice::cloud(blue ~ red + green, data = as.data.frame(tc ), col = cNms)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 993--993 []\T1/pcr/m/n/9 cNms[isC] # "white" "black" "blue" "cyan" "green" "magenta" "r ed" "yellow"[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 1000--1000 [] \T1/pcr/m/n/9 plot3d (tc, col = cNms, size = 11) # --> rotate w/ mouse; e nlarged corners:[] Underfull \vbox (badness 10000) has occurred while \output is active [798] [799] [800] [801] Underfull \hbox (badness 5175) in paragraph at lines 1239--1241 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [802] [803] [804] Overfull \hbox (25.98041pt too wide) in paragraph at lines 1410--1410 []\T1/pcr/m/n/9 zapsmall(lab <- convertColor(cols, from = "sRGB", to = "Lab", scale.in = 255))[] [805] [806] [807] Underfull \hbox (badness 3302) in paragraph at lines 1671--1675 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of Underfull \hbox (badness 10000) in paragraph at lines 1671--1675 []\T1/pcr/m/n/10 c("LinearGradient", "RadialGradient", "TilingPattern") [808] [809] [810] [811] [812] Underfull \hbox (badness 1565) in paragraph at lines 1962--1967 []\T1/ptm/m/n/10 The de-fault for []\T1/pcr/m/n/10 dev.print []\T1/ptm/m/n/10 i s to pro-duce and print a postscript copy. This will not Underfull \hbox (badness 1354) in paragraph at lines 1962--1967 \T1/ptm/m/n/10 sys-tem: see [][][]\T1/pcr/m/n/10 postscript[][][] []\T1/ptm/m/n /10 for how to set this up. Win-dows users may pre-fer to use [813] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2045--2045 []\T1/pcr/m/n/10 dev2bitmap(file, type = "png16m", height = 7, width = 7, res = 72,[] [814] Underfull \hbox (badness 1184) in paragraph at lines 2086--2096 []\T1/ptm/m/n/10 The types avail-able will de-pend on the ver-sion of []\T1/pcr /m/n/10 ghostscript[]\T1/ptm/m/n/10 , but are likely to in- Underfull \hbox (badness 2057) in paragraph at lines 2086--2096 []\T1/pcr/m/n/10 "tiffg4"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiffgray"[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 "tifflzw"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiffp ack"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiff12nc"[]\T1/ptm/m/n/10 , []\T1/pcr/ m/n/10 "tiff24nc"[]\T1/ptm/m/n/10 , [815] Underfull \hbox (badness 10000) in paragraph at lines 2198--2200 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [816] [817] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2335--2335 []\T1/pcr/m/n/10 embedGlyphs(file, glyphInfo, outfile = file, options = charac ter())[] [818] Underfull \hbox (badness 6758) in paragraph at lines 2386--2389 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are Underfull \hbox (badness 4927) in paragraph at lines 2390--2393 []\T1/pcr/m/n/10 embedGlyphs() []\T1/ptm/m/n/10 is rec-om-mended for []\T1/pcr/ m/n/10 pdf() []\T1/ptm/m/n/10 files that con-tain type-set glyphs (see [819] [820] Underfull \hbox (badness 2326) in paragraph at lines 2509--2519 []\T1/ptm/m/n/10 are given, then it uses those in a call to []\T1/pcr/m/n/10 se tGraphicsEventHandlers []\T1/ptm/m/n/10 to re-place Underfull \hbox (badness 2318) in paragraph at lines 2509--2519 \T1/ptm/m/n/10 any ex-ist-ing han-dlers in the cur-rent de-vice. This is for co m-pat-i-bil-ity with pre-2.12.0 Underfull \hbox (badness 2460) in paragraph at lines 2509--2519 \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions. The cur-rent nor-mal way to set up e vent han-dlers is to set them us-ing Underfull \hbox (badness 1221) in paragraph at lines 2509--2519 []\T1/pcr/m/n/10 setGraphicsEventHandlers []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 setGraphicsEventEnv []\T1/ptm/m/n/10 on one or more graph-ics [821] Overfull \hbox (20.58041pt too wide) in paragraph at lines 2612--2612 []\T1/pcr/m/n/9 dragplot <- function(..., xlim = NULL, ylim = NULL, xaxs = "r" , yaxs = "r") {[] [822] [823] [824] [825] Overfull \hbox (30.78088pt too wide) in paragraph at lines 2869--2869 []\T1/pcr/m/n/10 gray.colors(n, start = 0.3, end = 0.9, gamma = 2.2, alpha, re v = FALSE) Overfull \hbox (30.78088pt too wide) in paragraph at lines 2870--2870 []\T1/pcr/m/n/10 grey.colors(n, start = 0.3, end = 0.9, gamma = 2.2, alpha, re v = FALSE)[] [826] [827] [828] [829] Underfull \hbox (badness 10000) in paragraph at lines 3143--3144 [830] [831] [832] [833] [834] Overfull \hbox (24.78088pt too wide) in paragraph at lines 3472--3472 []\T1/pcr/m/n/10 colorConverter(toXYZ, fromXYZ, name, white = NULL, vectorized = FALSE)[] [835] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3556--3556 []\T1/pcr/m/n/9 zapsmall(luv <- convertColor(cols, from = "sRGB", to = "Luv", scale.in = 255))[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3557--3557 []\T1/pcr/m/n/9 (hex <- convertColor(luv, from = "Luv", to = hexcolor, scale. out = NULL))[] [836] [837] [838] Underfull \hbox (badness 10000) in paragraph at lines 3716--3722 []\T1/pcr/m/n/10 nclass.FD []\T1/ptm/m/n/10 uses the Freedman-Diaconis choice b ased on the inter-quartile range [839] Overfull \hbox (30.78088pt too wide) in paragraph at lines 3791--3791 []\T1/pcr/m/n/10 palette.colors(n = NULL, palette = "Okabe-Ito", alpha, recycl e = FALSE,[] [840] Overfull \hbox (9.78043pt too wide) in paragraph at lines 3883--3883 []\T1/pcr/m/n/9 (palette(gray(seq(0,.9,length.out = 25)))) # gray scales; prin t old palette[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 3903--3903 []\T1/pcr/m/n/9 ## Demonstrate the colors 1:8 in different palettes using a cu stom matplot()[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3910--3910 [] \T1/pcr/m/n/9 matplot(x, type = "l", lwd = 4, lty = 1, col = 1:n, ylab = "", main=main)[] [841] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3917--3917 []\T1/pcr/m/n/9 palROB <- colorRampPalette(c("red", "darkorange2", "blue"), sp ace = "Lab")[] Overfull \hbox (54.78088pt too wide) in paragraph at lines 3968--3968 []\T1/pcr/m/n/10 hcl.colors(n, palette = "viridis", alpha = NULL, rev = FALSE, fixup = TRUE) [842] Underfull \hbox (badness 8170) in paragraph at lines 3997--4000 []\T1/ptm/m/n/10 the type of palettes to list: []\T1/pcr/m/n/10 "qualitative"[] \T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sequential"[]\T1/ptm/m/n/10 , [843] Underfull \hbox (badness 2189) in paragraph at lines 4058--4063 []\T1/ptm/m/n/10 For ex-am-ple, []\T1/pcr/m/n/10 "Dark 3" []\T1/ptm/m/n/10 work s well for shad-ing points or lines in up to five groups, Underfull \hbox (badness 10000) in paragraph at lines 4096--4100 \T1/pcr/m/n/10 wikipedia . org / w / index . php ? title = HCL _ color _ space & oldid = 883465135$[][]\T1/ptm/m/n/10 . [844] Underfull \vbox (badness 10000) has occurred while \output is active [845] [846] Underfull \hbox (badness 1112) in paragraph at lines 4263--4267 []\T1/ptm/m/n/10 as `\T1/pcr/m/n/10 "CP1250.enc"\T1/ptm/m/n/10 ' (Cen-tral Eu-r o-pean), []\T1/pcr/m/n/10 "CP1251.enc" [847] [848] Underfull \hbox (badness 1577) in paragraph at lines 4429--4436 \T1/ptm/m/n/10 PostScript fonts fam-i-lies of those names which are in-cluded ( or cloned) in all com-mon [849] Underfull \hbox (badness 1688) in paragraph at lines 4490--4509 \T1/ptm/m/n/10 cod-ings (ex-cept []\T1/pcr/m/n/10 "TeXtext"[]\T1/ptm/m/n/10 ) a gree over that range. Some en-cod-ings are su-per-sets of Underfull \hbox (badness 2012) in paragraph at lines 4490--4509 \T1/ptm/m/n/10 ISO-Latin1. How-ever, if ac-cented and spe-cial char-ac-ters do not come out as you ex- [850] [851] Underfull \hbox (badness 5939) in paragraph at lines 4716--4723 []\T1/ptm/m/n/10 arguments []\T1/pcr/m/n/10 width[]\T1/ptm/m/n/10 , []\T1/pcr/m /n/10 height[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1 /pcr/m/n/10 family[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 title[]\T1/ptm/m/n/10 , [ ]\T1/pcr/m/n/10 fonts[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1448) in paragraph at lines 4716--4723 []\T1/pcr/m/n/10 version[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 paper[]\T1/ptm/m/n/ 10 , []\T1/pcr/m/n/10 encoding[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 bg[]\T1/ptm/m /n/10 , []\T1/pcr/m/n/10 fg[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pointsize[]\T1/p tm/m/n/10 , []\T1/pcr/m/n/10 pagecentre[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4716--4723 []\T1/pcr/m/n/10 colormodel[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 useDingbats[]\T1 /ptm/m/n/10 , []\T1/pcr/m/n/10 useKerning[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 fi llOddEven[]\T1/ptm/m/n/10 , [852] [853] [854]pdfTeX warning (ext4): destination with the same identifier (n ame{Rfn.symbol}) has been already used, duplicate ignored \relax l.4896 \aliasA{symbol}{plotmath}{symbol} [855] [856] Underfull \vbox (badness 10000) has occurred while \output is active [857] [858] [859] [860] [861] [862] Underfull \hbox (badness 1348) in paragraph at lines 5462--5465 []\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, [][]$\T1/pcr/m/n/10 https : / / ww w . iso . org / standard / 34342 . html$[][]\T1/ptm/m/n/10 . See also [863] Overfull \hbox (31.3804pt too wide) in paragraph at lines 5488--5488 []\T1/pcr/m/n/9 ## Not run: dev.print(png, filename = "myplot.png", width = 10 24, height = 768)[] Underfull \hbox (badness 4582) in paragraph at lines 5529--5535 []\T1/ptm/m/n/10 For use with []\T1/pcr/m/n/10 onefile = FALSE[]\T1/ptm/m/n/10 , give a C in-te-ger for-mat such as [864] [865] [866] Underfull \hbox (badness 7344) in paragraph at lines 5768--5770 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso Underfull \hbox (badness 7397) in paragraph at lines 5779--5783 [][][]\T1/pcr/m/n/10 postscriptFonts[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/ 10 Devices[][][][]\T1/ptm/m/n/10 , and [][][]\T1/pcr/m/n/10 check.options[][][] []\T1/ptm/m/n/10 which is called from both [867] [868] Underfull \hbox (badness 1552) in paragraph at lines 5907--5916 []\T1/pcr/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Bookman"[]\T1 /ptm/m/n/10 , []\T1/pcr/m/n/10 "Courier"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "He lvetica"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Helvetica-Narrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5907--5916 []\T1/pcr/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Pal atino" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/pc r/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5907--5916 []\T1/pcr/m/n/10 "URWBookman"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "NimbusMon"[]\ T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "NimbusSan" []\T1/ptm/m/n/10 (syn-onym []\T1/p cr/m/n/10 "URWHelvetica"[]\T1/ptm/m/n/10 ), Underfull \hbox (badness 2221) in paragraph at lines 5917--5919 []\T1/ptm/m/n/10 There are also map-pings for []\T1/pcr/m/n/10 "ComputerModern" []\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ComputerModernItalic" []\T1/ptm/m/n/10 and [869] Underfull \hbox (badness 4686) in paragraph at lines 5948--5954 []\T1/pcr/m/n/10 "Japan1"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Japan1HeiMin"[]\T 1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Japan1GothicBBB"[]\T1/ptm/m/n/10 , and []\T1/p cr/m/n/10 "Japan1Ryumin" []\T1/ptm/m/n/10 for [870] Underfull \hbox (badness 5388) in paragraph at lines 5973--5978 []\T1/pcr/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/p cr/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu / [871] [872] [873] Overfull \hbox (6.78088pt too wide) in paragraph at lines 6185--6185 []\T1/pcr/m/n/10 quartz.save(file, type = "png", device = dev.cur(), dpi = 100 , ...)[] [874] Underfull \hbox (badness 10000) in paragraph at lines 6272--6274 []\T1/ptm/m/n/10 Calling []\T1/pcr/m/n/10 quartz() []\T1/ptm/m/n/10 sets [][][] \T1/pcr/m/n/10 .Device[][][] []\T1/ptm/m/n/10 to []\T1/pcr/m/n/10 "quartz" []\T 1/ptm/m/n/10 for on-screen de-vices and to [875] [876] Overfull \hbox (20.58041pt too wide) in paragraph at lines 6397--6397 [] \T1/pcr/m/n/9 quartzFonts("mono") # the list(mono = ..) sublist o f quartzFonts()[] [877] [878] [879] Underfull \hbox (badness 1803) in paragraph at lines 6558--6561 \T1/ptm/m/n/10 play List", [][]$\T1/pcr/m/n/10 https : / / stattech . wordpress . fos . auckland . ac . nz / 2015 / 12 / 21 / [880] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6648--6648 []\T1/pcr/m/n/9 rgb((0:15)/15, green = 0, blue = 0, names = paste("red", 0:15, sep = "."))[] Underfull \hbox (badness 10000) in paragraph at lines 6662--6665 []\T1/pcr/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r ed/green/blue) into HSV space [881] [882] [883] [884] Overfull \hbox (25.98041pt too wide) in paragraph at lines 6882--6882 []\T1/pcr/m/n/9 p <- persp(x, y, fxy <- outer(x,y), phi = 20, theta = 15, r = 3, ltheta = -75,[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 6893--6893 []\T1/pcr/m/n/9 ## now some "horizontal rays" (going from center to very left or very right):[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 6895--6895 [] \T1/pcr/m/n/9 lines(trans3d(x=seq(x1, x2, by=0.5), y= -0.7, z = z, pmat = p, continuous = CNT),[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 6897--6897 []\T1/pcr/m/n/9 doHor(-10, 0, z = -0.5, col = 2) # x in [-10, 0] -- to the v ery left : fine[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 6898--6898 []\T1/pcr/m/n/9 doHor(-.5, 2, z = -0.52,col = 4) # x in [-0.5, 2] only {to th e right} --> all fine[] Overfull \hbox (117.7803pt too wide) in paragraph at lines 6899--6899 []\T1/pcr/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro blem (without \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 continuous=TRUE\TS1/pcr/m/n/9 '\T1/ pcr/m/n/9 ):[] [885] [886] Overfull \hbox (0.78088pt too wide) in paragraph at lines 7031--7031 []\T1/pcr/m/n/10 windows(width, height, pointsize, record, rescale, xpinch, yp inch, Overfull \hbox (0.78088pt too wide) in paragraph at lines 7038--7038 []\T1/pcr/m/n/10 win.metafile(filename = "", width = 7, height = 7, pointsize = 12,[] [887] [888] [889] [890] Underfull \hbox (badness 10000) in paragraph at lines 7305--7310 []\T1/ptm/m/n/10 arguments []\T1/pcr/m/n/10 width[]\T1/ptm/m/n/10 , []\T1/pcr/m /n/10 height[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pointsize[]\T1/ptm/m/n/10 , []\ T1/pcr/m/n/10 record[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 rescale[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1803) in paragraph at lines 7305--7310 []\T1/pcr/m/n/10 xpinch[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 ypinch[]\T1/ptm/m/n/ 10 , []\T1/pcr/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 canvas[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 gamma[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 xpos[]\T1/ptm/m /n/10 , []\T1/pcr/m/n/10 ypos[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 buffered[]\T1/ ptm/m/n/10 , Underfull \hbox (badness 2941) in paragraph at lines 7305--7310 []\T1/pcr/m/n/10 restoreConsole[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 clickToConfi rm[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 title[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 fillOddEven []\T1/ptm/m/n/10 and [891] [892] Overfull \hbox (36.7804pt too wide) in paragraph at lines 7413--7413 []\T1/pcr/m/n/9 windows() # make sure we have the right device type (availabl e on Windows only)[] Underfull \hbox (badness 3590) in paragraph at lines 7452--7455 []\T1/ptm/m/n/10 The \T1/phv/m/n/10 R \T1/ptm/m/n/10 func-tion is a wrap-per fo r two de-vices, one based on Xlib ([][]$\T1/pcr/m/n/10 https : / / Underfull \hbox (badness 2393) in paragraph at lines 7452--7455 \T1/pcr/m/n/10 en . wikipedia . org / wiki / Xlib$[][]\T1/ptm/m/n/10 ) and one us-ing cairo-graph-ics ([][]$\T1/pcr/m/n/10 https : / / www . Overfull \hbox (12.78088pt too wide) in paragraph at lines 7463--7463 [] \T1/pcr/m/n/10 fonts, family, xpos, ypos, title, type, antialias, symbol family)[] [893] Underfull \hbox (badness 1189) in paragraph at lines 7528--7530 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [894] Underfull \hbox (badness 10000) in paragraph at lines 7633--7635 []\T1/pcr/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ K lan-guages and [895] Underfull \hbox (badness 10000) in paragraph at lines 7678--7685 []\T1/ptm/m/n/10 Problems with in-cor-rect ren-der-ing of sym-bols (e.g., of [] \T1/pcr/m/n/10 quote(pi) []\T1/ptm/m/n/10 and Underfull \hbox (badness 2469) in paragraph at lines 7678--7685 []\T1/pcr/m/n/10 expression(10^degree)[]\T1/ptm/m/n/10 ) have been seen on Linu x sys-tems which have the Wine [896] Underfull \hbox (badness 5607) in paragraph at lines 7760--7764 []\T1/pcr/m/n/10 type = "Xlib" []\T1/ptm/m/n/10 sup-ports `True-Color', `Pseu-d o-Color', `GrayScale', []\T1/pcr/m/n/10 StaticGray []\T1/ptm/m/n/10 and [897] Overfull \hbox (20.58041pt too wide) in paragraph at lines 7812--7812 [] \T1/pcr/m/n/9 function(...) grDevices::X11.options(width = 8, height = 6, xpos = 0,[] [898] [899] Overfull \hbox (63.78036pt too wide) in paragraph at lines 7985--7985 []\T1/pcr/m/n/9 op <- options(warn = 2)# ==> warnings would be errors, we supp ress the one "we know":[] [900] Underfull \hbox (badness 1231) in paragraph at lines 8024--8026 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., []\T1/pcr/m/n/10 number[i] []\T1/ptm/m/n/10 is the mul-ti-plic-ity of Overfull \hbox (9.78043pt too wide) in paragraph at lines 8051--8051 []\T1/pcr/m/n/9 xy <- data.frame(x = round(sort(stats::rnorm(100))), y = stats ::rnorm(100))[] [901] [902] [903]) (./graphics-pkg.tex [904] Chapter 5. Underfull \hbox (badness 4647) in paragraph at lines 17--19 []\T1/ptm/m/n/10 For a com-plete list of func-tions with in-di-vid-ual help pag es, use []\T1/pcr/m/n/10 library(help = [905] [906] [907] [908] [909] [910] [911] Overfull \hbox (6.05087pt too wide) in paragraph at lines 451--451 [] \T1/pcr/m/n/10 gap.axis <- if(perpendicular(side, las)) 0.25 else 1[] Underfull \hbox (badness 4048) in paragraph at lines 483--489 []\T1/ptm/m/n/10 When []\T1/pcr/m/n/10 at = NULL[]\T1/ptm/m/n/10 , pretty tick mark lo-ca-tions are com-puted in-ter-nally (the same way [912] [913] Overfull \hbox (47.58038pt too wide) in paragraph at lines 581--581 []\T1/pcr/m/n/9 ## now shrink the window (in x- and y-direction) and observe t he axis labels drawn[] [914] Overfull \hbox (15.18042pt too wide) in paragraph at lines 698--698 []\T1/pcr/m/n/9 axis.Date(3, at = as.integer(as.Date("2023-04-01")), col.axis = "darkgreen")[] [915] Overfull \hbox (15.18042pt too wide) in paragraph at lines 713--713 []\T1/pcr/m/n/9 axis.POSIXct(3, at = as.POSIXct("2022-10-01 00:01:30"), col.ax is = "orange")[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 718--718 []\T1/pcr/m/n/9 axis.POSIXct(3, at = as.numeric(as.POSIXct("2022-10-01 00:00:3 0")) + 0.25,[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 719--719 [] \T1/pcr/m/n/9 col.axis = "forestgreen", col = "darkgreen", m gp = c(3,2,0))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 725--725 []\T1/pcr/m/n/9 plot(data.frame(HST, y = 1), xaxt = "n", xlab = "Hawaii Standa rd Time (HST)")[] Underfull \hbox (badness 10000) in paragraph at lines 752--756 []\T1/ptm/m/n/10 numeric vec-tor of length three, de-fault-ing to [][][]\T1/pcr /m/n/10 par[][][]("xaxp") []\T1/ptm/m/n/10 or Underfull \hbox (badness 3250) in paragraph at lines 752--756 [][][]\T1/pcr/m/n/10 par[][][]("yaxp") []\T1/ptm/m/n/10 de-pend-ing on the []\T 1/pcr/m/n/10 side []\T1/ptm/m/n/10 ar-gu-ment ([]\T1/pcr/m/n/10 par("xaxp") []\ T1/ptm/m/n/10 if [916] [917] Overfull \hbox (4.38043pt too wide) in paragraph at lines 839--839 [] \T1/pcr/m/n/9 axp = c(get_axp(usr.i), n = 3), log = TRUE, n intLog = 5))[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 876--876 [] \T1/pcr/m/n/10 add = FALSE, ann = !add && par("ann"), args.legend = NULL, ...)[] [918] [919] Underfull \hbox (badness 10000) in paragraph at lines 1021--1025 [][][]\T1/pcr/m/n/10 plot[][][](..., type = "h")[]\T1/ptm/m/n/10 , [][][]\T1/pc r/m/n/10 dotchart[][][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 hist[][][] []\T1 /ptm/m/n/10 for bars of a \T1/ptm/m/it/10 con-tin-u-ous \T1/ptm/m/n/10 vari-abl e. [920] Overfull \hbox (133.98029pt too wide) in paragraph at lines 1038--1038 [] \T1/pcr/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 1040--1040 []\T1/pcr/m/n/9 (xt <- xtabs(Freq ~ Survived + Class + Sex, d.Titanic, subset = Age=="Adult"))[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 1042--1042 []\T1/pcr/m/n/9 mosaicplot(xt[,,"Male"], main = "mosaicplot(Freq ~ Class + Sur vived, *)", color=TRUE)[] [921] [922] [923] [924] Overfull \hbox (31.3804pt too wide) in paragraph at lines 1325--1325 []\T1/pcr/m/n/9 # *add* notches (somewhat funny here <--> warning "notches .. outside hinges"):[] [925] [926] [927] Underfull \hbox (badness 2503) in paragraph at lines 1487--1496 \T1/ptm/m/n/10 when []\T1/pcr/m/n/10 horizontal []\T1/ptm/m/n/10 is false, and []\T1/pcr/m/n/10 xlim []\T1/ptm/m/n/10 hor-i-zon-tally. []\T1/pcr/m/n/10 xaxt[] \T1/ptm/m/n/10 , []\T1/pcr/m/n/10 yaxt[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3375) in paragraph at lines 1522--1524 []\T1/ptm/m/n/10 whisker line type (de-fault: []\T1/pcr/m/n/10 "dashed"[]\T1/pt m/m/n/10 ), [928] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1594--1594 []\T1/pcr/m/n/9 boxplot(z, col.axis = "skyblue3", main = "boxplot(*, col.axi s=..,main=..)")[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1595--1595 []\T1/pcr/m/n/9 plot(z[[1]], col.axis = "skyblue3", main = "plot(*, col.axi s=..,main=..)")[] [929] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1601--1601 []\T1/pcr/m/n/9 splus <- list(boxwex = 0.4, staplewex = 1, outwex = 1, boxfill = "grey40",[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 1602--1602 [] \T1/pcr/m/n/9 medlwd = 3, medcol = "white", whisklty = 3, outl ty = 1, outpch = NA)[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 1635--1635 [] \T1/pcr/m/n/10 yaxlabels = NULL, xlim = NULL, ylim = c(0, 1), weights = NU LL, ...)[] [930] [931] [932] [933] [934] Underfull \hbox (badness 10000) in paragraph at lines 1908--1914 [][][]\T1/pcr/m/n/10 contourLines[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 filled.contour[][][] []\T1/ptm/m/n/10 for color-filled con-tours, [][][]\T1/pcr /m/n/10 contourplot[][][] []\T1/ptm/m/n/10 (and Overfull \hbox (9.78043pt too wide) in paragraph at lines 1928--1928 []\T1/pcr/m/n/9 contour(x, x, z, ylim = c(-6, 6), nlevels = 20, lty = 2, metho d = "simple",[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 1940--1940 []\T1/pcr/m/n/9 contour(z, levels=levs[-c(1,length(levs))], col = 1:5, lwd = 1 :3 *1.5, lty = 1:3)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1956--1956 []\T1/pcr/m/n/9 plot(x = 0, y = 0, type = "n", xlim = rx, ylim = ry, xlab = "" , ylab = "")[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1965--1965 []\T1/pcr/m/n/9 plot(x = 0, y = 0, type = "n", xlim = rx, ylim = ry, xlab = "" , ylab = "")[] [935] [936] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2050--2050 []\T1/pcr/m/n/10 coplot(formula, data, given.values, panel = points, rows, col umns, [937] [938] Overfull \hbox (31.3804pt too wide) in paragraph at lines 2179--2179 []\T1/pcr/m/n/9 coplot(lat ~ long | depth, data = quakes, given.values = given .depth, rows = 1)[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2184--2184 []\T1/pcr/m/n/9 coplot(ll.dm, data = quakes, number = c(4, 7), show.given = c( TRUE, FALSE))[] [939] [940] Overfull \hbox (18.78088pt too wide) in paragraph at lines 2358--2358 []\T1/pcr/m/n/10 dotchart(x, labels = NULL, groups = NULL, gdata = NULL, offse t = 1/8, Overfull \hbox (54.78088pt too wide) in paragraph at lines 2359--2359 [] \T1/pcr/m/n/10 ann = par("ann"), xaxt = par("xaxt"), frame.plot = T RUE, log = "",[] [941] Underfull \hbox (badness 1430) in paragraph at lines 2389--2391 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/pcr/m/n/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [942] Overfull \hbox (78.78088pt too wide) in paragraph at lines 2470--2470 [] \T1/pcr/m/n/10 color.palette = function(n) hcl.colors(n, "YlO rRd", rev = TRUE),[] Overfull \hbox (66.78088pt too wide) in paragraph at lines 2472--2472 [] \T1/pcr/m/n/10 plot.title, plot.axes, key.title, key.axes, ke y.border = NULL,[] Underfull \hbox (badness 1009) in paragraph at lines 2482--2489 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [943] Underfull \hbox (badness 7273) in paragraph at lines 2565--2569 [][][]\T1/pcr/m/n/10 contour[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 image [][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 hcl.colors[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gray.colors[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 palette[][][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 contourplot[][][] []\T1/p tm/m/n/10 and [944] [945] [946] [947] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2822--2822 []\T1/pcr/m/n/9 ## maybe change the desired number of tick marks: par(lab = c (mx, my, 7))[] [948] Overfull \hbox (42.18039pt too wide) in paragraph at lines 2843--2843 []\T1/pcr/m/n/9 plot(8:270, log="xy") ; grid() # at (1, 10, 100); if preferrin g "all" grid lines:[] [949] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2882--2882 [] \T1/pcr/m/n/10 density = NULL, angle = 45, col = "lightgray", border = NULL,[] [950] Underfull \hbox (badness 1226) in paragraph at lines 3008--3012 \T1/pcr/m/n/10 1)[]\T1/ptm/m/n/10 , they are the rel-a-tive fre-quen-cies []\T1 /pcr/m/n/10 counts/n []\T1/ptm/m/n/10 and in gen-eral sat-isfy [951] Overfull \hbox (15.18042pt too wide) in paragraph at lines 3061--3061 []\T1/pcr/m/n/9 ## Extreme outliers; the "FD" rule would take very large numbe r of \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 breaks\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 :[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3065--3065 []\T1/pcr/m/n/9 length(hh$breaks) ## typically 1 million -- though 1e6 was "a suggestion only"[] [952] Underfull \hbox (badness 10000) in paragraph at lines 3127--3130 [][][]\T1/ptm/m/n/10 graphical pa-ram-e-ters[][][], or ar-gu-ments to [][][]\T1 /pcr/m/n/10 hist.default[][][] []\T1/ptm/m/n/10 such as [953] Overfull \hbox (15.18042pt too wide) in paragraph at lines 3178--3178 []\T1/pcr/m/n/9 ## The default fuzz in hist.default() "kills" this, with a "w rong" message:[] [954] [955] Overfull \hbox (36.7804pt too wide) in paragraph at lines 3342--3342 []\T1/pcr/m/n/9 identifyPch <- function(x, y = NULL, n = length(x), plot = FAL SE, pch = 19, ...)[] Overfull \hbox (79.98035pt too wide) in paragraph at lines 3347--3347 [] \T1/pcr/m/n/9 ans <- identify(x[!sel], y[!sel], labels = which(!sel) , n = 1, plot = plot, ...)[] [956] [957] Underfull \hbox (badness 10000) in paragraph at lines 3489--3494 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 useRaster []\T1/ptm/m/n/10 is not spec-i-f ied, raster im-ages are used when the Underfull \hbox (badness 10000) in paragraph at lines 3489--3494 [][][]\T1/pcr/m/n/10 getOption[][][]("preferRaster") []\T1/ptm/m/n/10 is true, the grid is reg-u-lar and ei-ther Underfull \hbox (badness 10000) in paragraph at lines 3489--3494 [][][]\T1/pcr/m/n/10 dev.capabilities[][][]("rasterImage")$rasterImage []\T1/pt m/m/n/10 is []\T1/pcr/m/n/10 "yes" []\T1/ptm/m/n/10 or it is [958] Overfull \hbox (31.3804pt too wide) in paragraph at lines 3524--3524 []\T1/pcr/m/n/9 # Visualize as matrix. Need to transpose matrix and then flip it horizontally:[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 3526--3526 []\T1/pcr/m/n/9 imageM <- function(m, grid = max(dim(m)) <= 25, asp = (nrow(m) -1)/(ncol(m)-1), ...) {[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 3529--3529 [] \T1/pcr/m/n/9 axis(side, at=at, labels=as.character(j+1L), col="gray ", col.axis=1, ...)[] [959] [960] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3686--3686 []\T1/pcr/m/n/9 barplot(yhist$counts, axes = FALSE, xlim = c(0, top), space = 0, horiz = TRUE)[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 3705--3705 [] \T1/pcr/m/n/10 box.lwd = par("lwd"), box.lty = par("lty"), box.col = par("fg"),[] [961] Overfull \hbox (12.78088pt too wide) in paragraph at lines 3709--3709 [] \T1/pcr/m/n/10 text.font = NULL, merge = do.lines && has.pch, trace = FALSE,[] [962] [963] Overfull \hbox (36.7804pt too wide) in paragraph at lines 3894--3894 [] \T1/pcr/m/n/9 text (1, y.leg[i] - 0.1, paste("cex=", formatC(cexv[i])), c ex = 0.8, adj = 0)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3895--3895 [] \T1/pcr/m/n/9 legend(3, y.leg[i], leg.txt, pch = "sSvV", col = c(1, 3), ce x = cexv[i])[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3899--3899 [] \T1/pcr/m/n/9 cex = 1+(-1:2)/8, trace = TRUE)# trace: show computed l engths & coords[] [964] Overfull \hbox (15.18042pt too wide) in paragraph at lines 3909--3909 [] \T1/pcr/m/n/9 title("legend(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 top\TS1/pcr/m/n/ 9 '\T1/pcr/m/n/9 , lty = c(2, -1, 1), pch = c(NA, 3, 4), merge = TRUE)",[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 3940--3940 [] \T1/pcr/m/n/9 "text(c(3,3),2:3,\"c(rect(...)\")"), adj = c(0, 0.3))[] Underfull \vbox (badness 10000) has occurred while \output is active [965] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3966--3966 []\T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 Filled\TS1/pcr/m/n/9 ' \T1/pc r/m/n/9 boxes -- see also example(barplot) which may call legend(*, fill=)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3968--3968 []\T1/pcr/m/n/9 legend("topright", rownames(VADeaths), fill = gray.colors(nrow (VADeaths)))[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3979--3979 []\T1/pcr/m/n/9 legend("bottomright", paste("sin(", 1:7, "pi * x)"), col = 1:7 , lty = 1:7,[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3994--3994 []\T1/pcr/m/n/9 legend(.4,1, "sin(c x)", pch = 21, pt.bg = "white", lty = 1, c ol = "blue")[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 4002--4002 []\T1/pcr/m/n/9 legend("topleft", "(x,y)", pch=1, title= "topleft, inset = .05", inset = .05)[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 4004--4004 []\T1/pcr/m/n/9 legend("topright", "(x,y)", pch=1, title= "topright, inset = .02",inset = .02)[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 4012--4012 [] \T1/pcr/m/n/9 plot(1, type = "n", axes = FALSE, ann = FALSE); title(paste ("text.font =",i))[] Underfull \vbox (badness 10000) has occurred while \output is active [966] Overfull \hbox (15.18042pt too wide) in paragraph at lines 4022--4022 []\T1/pcr/m/n/9 legend("bottomleft", c("This legend", "has", "optimally sized" , "columns."),[] Underfull \hbox (badness 10000) in paragraph at lines 4084--4088 [][][]\T1/pcr/m/n/10 lines.formula[][][] []\T1/ptm/m/n/10 for the for-mula meth od; [][][]\T1/pcr/m/n/10 points[][][][]\T1/ptm/m/n/10 , par-tic-u-larly for []\ T1/pcr/m/n/10 type %in% [967] [968] Overfull \hbox (6.78088pt too wide) in paragraph at lines 4196--4196 [] \T1/pcr/m/n/10 log = "", ..., add = FALSE, verbose = getOption("verb ose"))[] [969] [970] Overfull \hbox (25.98041pt too wide) in paragraph at lines 4344--4344 []\T1/pcr/m/n/9 nd <- length(dv <- seq(as.Date("1959-02-21"), by = "weeks", le ngth.out = 100))[] Underfull \vbox (badness 10000) has occurred while \output is active [971] [972] Underfull \hbox (badness 3930) in paragraph at lines 4431--4433 []\T1/ptm/m/n/10 The mag-ni-fi-ca-tion to be used for axis an-no-ta-tion, as a mul-ti-ple of [973] [974] [975] [976] [977] Underfull \hbox (badness 1286) in paragraph at lines 4747--4750 []\T1/ptm/m/n/10 which draws the ti-tle. You may want to spec-ify []\T1/pcr/m/n /10 oma []\T1/ptm/m/n/10 when chang-ing Underfull \hbox (badness 3229) in paragraph at lines 4755--4760 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [978] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4851--4851 []\T1/pcr/m/n/9 pairs(USJudgeRatings, lower.panel = panel.smooth, upper.panel = panel.cor,[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4856--4856 [] \T1/pcr/m/n/9 main = "Lengths and Widths in [log]", line.main=1.5, oma =c(2,2,3,2))[] [979] [980] Underfull \hbox (badness 1264) in paragraph at lines 5117--5130 \T1/ptm/m/n/10 func-tions such as [][][]\T1/pcr/m/n/10 plot.default[][][][]\T1/ ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.window[][][][]\T1/ptm/m/n/10 , [][][]\T1 /pcr/m/n/10 points[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lines[][][][]\T 1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 abline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc r/m/n/10 axis[][][][]\T1/ptm/m/n/10 , [981] [982] [983] Underfull \hbox (badness 10000) in paragraph at lines 5383--5386 [984 ] Underfull \hbox (badness 10000) in paragraph at lines 5444--5446 Underfull \vbox (badness 10000) has occurred while \output is active [985] [986 ] [987] [988] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5694--5694 []\T1/pcr/m/n/9 c(prof.pilots = 16, lawyers = 11, farmers = 10, salesmen = 9, physicians = 9,[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5695--5695 [] \T1/pcr/m/n/9 mechanics = 6, policemen = 6, managers = 6, engineers = 5, t eachers = 4,[] [989] [990] [991] Overfull \hbox (25.98041pt too wide) in paragraph at lines 5912--5912 []\T1/pcr/m/n/9 points(trans3d(xy[,1], xy[,2], z = 6, pmat = res), co l = 2, pch = 16)[] [992] [993] [994] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6059--6059 []\T1/pcr/m/n/9 pie(c(Sky = 78, "Sunny side of pyramid" = 17, "Shady side of p yramid" = 5),[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 6060--6060 [] \T1/pcr/m/n/9 init.angle = 315, col = c("deepskyblue", "yellow", "yellow 3"), border = FALSE)[] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha s been already used, duplicate ignored \relax l.6119 \aliasA{plot}{plot.default}{plot} [995] [996] [997] [998] [999] [1000] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6462--6462 []\T1/pcr/m/n/9 plot(PlantGrowth$group, axes = FALSE, main = "no axes") # ext remely silly[] [1001] [1002] Overfull \hbox (66.78088pt too wide) in paragraph at lines 6586--6586 [] \T1/pcr/m/n/10 main = paste("Histogram of", paste(x$xname, co llapse = "\n")),[] [1003] [1004] [1005] [1006] Underfull \hbox (badness 10000) in paragraph at lines 6892--6894 []\T1/ptm/m/n/10 background (fill) color for the open plot sym-bols 21:25: see [1007] [1008] Underfull \hbox (badness 1028) in paragraph at lines 6985--6987 []\T1/ptm/m/n/10 character (or sym-bol) ex-pan-sion: a nu-mer-i-cal vec-tor. Th is works as a mul-ti-ple of Overfull \hbox (31.57222pt too wide) in paragraph at lines 7026--7027 [][] [1009 ] Overfull \hbox (20.58041pt too wide) in paragraph at lines 7120--7120 []\T1/pcr/m/n/9 plot(x, sin(x), type = "o", pch = 21, bg = par("bg"), col = "b lue", cex = .6,[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 7124--7124 []\T1/pcr/m/n/9 ## Illustration of pch = 0:25 (as in the figure shown above in PDF/HTML help)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 7125--7125 []\T1/pcr/m/n/9 ## Not run: png("pch.png", height = 0.7, width = 7, res = 100, units = "in")[] [1010] Overfull \hbox (31.3804pt too wide) in paragraph at lines 7149--7149 [] \T1/pcr/m/n/9 plot(rx, ry, type = "n", axes = FALSE, xlab = "", ylab = "", main = main)[] Underfull \vbox (badness 10000) has occurred while \output is active [1011] [1012] Underfull \hbox (badness 10000) in paragraph at lines 7271--7273 []\T1/ptm/m/n/10 The code im-ple-ment-ing poly-gon shad-ing was do-nated by Kev in Buhr Overfull \hbox (15.18042pt too wide) in paragraph at lines 7298--7298 [] \T1/pcr/m/n/9 polygon(x, y, xpd = xpd, col = "orange", lty = 2, lwd = 2, b order = "red")[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7304--7304 []\T1/pcr/m/n/9 yy <- c(c(0, cumsum(stats::rnorm(n))), rev(c(0, cumsum(stats:: rnorm(n)))))[] [1013] Underfull \hbox (badness 2600) in paragraph at lines 7361--7363 []\T1/ptm/m/n/10 character value spec-i-fy-ing the path fill mode: ei-ther []\T 1/pcr/m/n/10 "winding" []\T1/ptm/m/n/10 or [1014] [1015] [1016] [1017] Overfull \hbox (9.78043pt too wide) in paragraph at lines 7593--7593 []\T1/pcr/m/n/9 rect(100+i, 300+i, 150+i, 380+i, col = rainbow(11, start = 0.7 , end = 0.1))[] [1018] [1019] [1020] [1021] [1022] [1023] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7980--7980 []\T1/pcr/m/n/9 Lab.palette <- colorRampPalette(c("blue", "orange", "red"), sp ace = "Lab")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 7984--7984 []\T1/pcr/m/n/9 ## label the 20 very lowest-density points,the "outliers" (wit h obs.number):[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 7996--7996 []\T1/pcr/m/n/9 pairs(y, panel = function(...) smoothScatter(..., nrpoints = 0 , add = TRUE),[] [1024] Overfull \hbox (36.78088pt too wide) in paragraph at lines 8023--8023 [] \T1/pcr/m/n/10 xlim = NULL, ylim = c(0, 1), axes = TRUE, weights = NULL, ...)[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 8032--8032 [] \T1/pcr/m/n/10 subset = NULL, weights = NULL, drop.unused.levels = FALSE)[] [1025] [1026] [1027] [1028] [1029] Overfull \hbox (9.78043pt too wide) in paragraph at lines 8348--8348 []\T1/pcr/m/n/9 stars(USJudgeRatings, locations = c(0, 0), scale = FALSE, radi us = FALSE,[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 8351--8351 []\T1/pcr/m/n/9 stars(USJudgeRatings, locations = c(0, 0), scale = FALSE, radi us = FALSE,[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 8355--8355 [] \T1/pcr/m/n/9 draw.segments = TRUE, col.segments = 0, col.stars = 1:10 , key.loc = 0:1,[] [1030] [1031] [1032] Overfull \hbox (30.78088pt too wide) in paragraph at lines 8541--8541 []\T1/pcr/m/n/10 strwidth(s, units = "user", cex = NULL, font = NULL, vfont = NULL, ...) Overfull \hbox (36.78088pt too wide) in paragraph at lines 8542--8542 []\T1/pcr/m/n/10 strheight(s, units = "user", cex = NULL, font = NULL, vfont = NULL, ...)[] [1033] [1034] Overfull \hbox (0.78088pt too wide) in paragraph at lines 8646--8646 []\T1/pcr/m/n/10 sunflowerplot(formula, data = NULL, xlab = NULL, ylab = NULL, ...,[] [1035] Underfull \hbox (badness 1112) in paragraph at lines 8705--8709 []\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 number[i] == 1[]\T1/ptm/m/n/10 , a (sligh tly en-larged) usual plot-ting sym-bol ([]\T1/pcr/m/n/10 pch[]\T1/ptm/m/n/10 ) is drawn. For [1036] Overfull \hbox (20.58041pt too wide) in paragraph at lines 8767--8767 []\T1/pcr/m/n/9 sunflowerplot(iris[, 3:4], cex = .2, cex.fact = 1, size = .035 , seg.lwd = .8)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8782--8782 []\T1/pcr/m/n/9 sunflowerplot(rnorm(100), rnorm(100), number = rpois(n = 100, lambda = 2),[] [1037] [1038] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8918--8918 []\T1/pcr/m/n/9 text(x, y, apply(format(round(z3, digits = 2)), 1, paste, coll apse = ","),[] [1039] [1040] Overfull \hbox (4.38043pt too wide) in paragraph at lines 9112--9112 [] \T1/pcr/m/n/9 "Le français, c\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 est facile: Règles, Liberté, Egalité, Fraternité...")[] [1041] Underfull \hbox (badness 1215) in paragraph at lines 9140--9142 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/pcr/m /n/10 par(c("font.sub", Underfull \hbox (badness 1584) in paragraph at lines 9174--9180 []\T1/ptm/m/n/10 The po-si-tions of []\T1/pcr/m/n/10 xlab[]\T1/ptm/m/n/10 , []\ T1/pcr/m/n/10 ylab []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 sub []\T1/ptm/m/n/10 a re []\T1/pcr/m/n/10 line []\T1/ptm/m/n/10 (de-fault for []\T1/pcr/m/n/10 xlab [ ]\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 ylab []\T1/ptm/m/n/10 be-ing [1042]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni ts}) has been already used, duplicate ignored \relax l.9222 \HeaderA{units}{Graphical Units}{units} pdfTeX warning (ext4): destinatio n with the same identifier (name{Rfn.units.1}) has been already used, duplicate ignored \relax l.9222 \HeaderA{units}{Graphical Units}{units} [1043] Underfull \hbox (badness 1205) in paragraph at lines 9287--9289 []\T1/ptm/m/n/10 vectors con-tain-ing the co-or-di-nates of the ver-tices of th e poly-gon. See [1044] [1045] Overfull \hbox (25.98041pt too wide) in paragraph at lines 9406--9406 []\T1/pcr/m/n/9 arrows(res$x[nr-3], res$y[nr-3], res$x[nr], res$y[nr], code = 2, length = 0.1)[] [1046]) (./grid-pkg.tex Chapter 6. [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] Underfull \hbox (badness 4859) in paragraph at lines 635--638 []\T1/ptm/m/n/10 Modification of the view-port (should all be valid ar-gu-ments to the [1057] [1058] [1059] [1060] [1061] [1062] Overfull \hbox (31.3804pt too wide) in paragraph at lines 1029--1029 [] \T1/pcr/m/n/9 width=unit(1, "inches"), height=un it(1, "inches")))[] [1063] [1064] [1065] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1240--1240 [] \T1/pcr/m/n/9 vpList(vpStack(viewport(x=0.1, y=0.1, width=0.5 , height=0.5,[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1241--1241 [] \T1/pcr/m/n/9 just=c("left", "bottom" ), name="B"),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1242--1242 [] \T1/pcr/m/n/9 viewport(x=0.1, y=0.1, width=0.5 , height=0.5,[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1243--1243 [] \T1/pcr/m/n/9 just=c("left", "bottom" ), name="C"),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1244--1244 [] \T1/pcr/m/n/9 viewport(x=0.1, y=0.1, width=0.5 , height=0.5,[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1245--1245 [] \T1/pcr/m/n/9 just=c("left", "bottom" ), name="D")),[] [1066] [1067] [1068] [1069] Underfull \hbox (badness 3219) in paragraph at lines 1504--1507 []\T1/ptm/m/n/10 Both func-tions cre-ate a cir-cle grob (a graph-i-cal ob-ject de-scrib-ing a cir-cle), but only [1070] [1071] [1072] [1073] [1074] [1075] [1076] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1892--1892 [] \T1/pcr/m/n/9 do.call("grid.curve", c(list(x1=.25, y1=.25, x2=.75, y2=.75) , list(...)))[] [1077] [1078] [1079] Overfull \hbox (25.98041pt too wide) in paragraph at lines 2106--2106 []\T1/pcr/m/n/9 grid.rect(width=.4, height=.4, x=.25, y=.75, gp=gpar(fill="bla ck"), name="r1")[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2107--2107 []\T1/pcr/m/n/9 grid.rect(width=.4, height=.4, x=.5, y=.5, gp=gpar(fill="grey" ), name="r2")[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 2108--2108 []\T1/pcr/m/n/9 grid.rect(width=.4, height=.4, x=.75, y=.25, gp=gpar(fill="whi te"), name="r3")[] [1080] Underfull \hbox (badness 2961) in paragraph at lines 2143--2148 []\T1/ptm/m/n/10 The meth-ods for grob and gTree call the generic hook func-tio ns []\T1/pcr/m/n/10 preDrawDetails[]\T1/ptm/m/n/10 , [1081] Underfull \hbox (badness 4479) in paragraph at lines 2231--2234 []\T1/ptm/m/n/10 Both func-tions call []\T1/pcr/m/n/10 editDetails []\T1/ptm/m/ n/10 to al-low a grob to per-form cus-tom ac-tions and [1082] [1083] [1084] Underfull \hbox (badness 2894) in paragraph at lines 2438--2445 []\T1/ptm/m/n/10 Both func-tions cre-ate a frame grob (a graph-i-cal ob-ject de -scrib-ing a frame), but only [1085] [1086] [1087] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2594--2594 []\T1/pcr/m/n/10 getGrob(gTree, gPath, strict = FALSE, grep = FALSE, global = FALSE)[] [1088] Underfull \hbox (badness 1014) in paragraph at lines 2680--2685 []\T1/ptm/m/n/10 The jus-ti-fi-ca-tion of the glyphs rel-a-tive to the ([]\T1/p cr/m/n/10 x[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 ) lo-ca-tion. Can be [1089] Overfull \hbox (12.78088pt too wide) in paragraph at lines 2726--2726 []\T1/pcr/m/n/10 grid.grabExpr(expr, warn = 2, wrap = wrap.grobs, wrap.grobs = FALSE,[] [1090] [1091] Overfull \hbox (15.18042pt too wide) in paragraph at lines 2888--2888 [] \T1/pcr/m/n/9 children=gList(grob(name="child", vp ="vp1::vp2")),[] [1092] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2920--2920 [] \T1/pcr/m/n/10 default.units = "npc", gp=gpar(col = "grey"), vp = NULL)[] [1093] [1094] Underfull \hbox (badness 10000) in paragraph at lines 3103--3105 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1095] Underfull \hbox (badness 1077) in paragraph at lines 3120--3139 []\T1/ptm/m/n/10 Another pos-si-ble use of []\T1/pcr/m/n/10 grid.group() []\T1/ ptm/m/n/10 is to spec-ify both []\T1/pcr/m/n/10 src []\T1/ptm/m/n/10 and []\T1/ pcr/m/n/10 dst []\T1/ptm/m/n/10 and com-bine Underfull \hbox (badness 1622) in paragraph at lines 3120--3139 []\T1/ptm/m/n/10 is only drawn where it is NOT over-lapped by []\T1/pcr/m/n/10 src[]\T1/ptm/m/n/10 . The fol-low-ing (ex-tended) Porter- Underfull \hbox (badness 2057) in paragraph at lines 3120--3139 []\T1/pcr/m/n/10 "multiply"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "screen"[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 "overlay"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "darke n"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lighten"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n /10 "color.dodge"[]\T1/ptm/m/n/10 , [1096] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3192--3192 [] \T1/pcr/m/n/9 mask <- as.mask(rectGrob(gp=gpar(col=NA, fill="grey50")), ty pe="luminance")[] [1097] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3308--3308 [] \T1/pcr/m/n/9 pushViewport(viewport(layout=grid.layout(1, 1, widths=unit(1 , "inches"),[] [1098] [1099] [1100] [1101] [1102] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3623--3623 [] \T1/pcr/m/n/9 children=vpList(viewpor t(name="vp2"))))[] [1103] [1104] Overfull \hbox (52.98038pt too wide) in paragraph at lines 3719--3719 []\T1/pcr/m/n/9 pushViewport(viewport(x=0, y=0, width=0.25, height=0.25, just= c("left", "bottom")))[] Underfull \hbox (badness 2799) in paragraph at lines 3756--3762 []\T1/ptm/m/n/10 There are two hooks called []\T1/pcr/m/n/10 "before.grid.newpa ge" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "grid.newpage" []\T1/ptm/m/n/10 (see [1105] [1106] Overfull \hbox (6.78088pt too wide) in paragraph at lines 3848--3848 [] \T1/pcr/m/n/10 force.width = FALSE, force.height = FALSE, border = NULL,[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 3855--3855 [] \T1/pcr/m/n/10 force.width = FALSE, force.height = FALSE, border = NULL,[] [1107] [1108] [1109] Overfull \hbox (9.78043pt too wide) in paragraph at lines 4057--4057 [] \T1/pcr/m/n/9 "Nested rectangles, outer clockwise, inner ant i-clockwise")[] [1110] Overfull \hbox (25.98041pt too wide) in paragraph at lines 4072--4072 [] \T1/pcr/m/n/9 "Overlapping rectangles, one clockwise, other anti-clockwise")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 4093--4093 []\T1/pcr/m/n/9 # Not specifying pathId will treat all points as part of the s ame path, thus[] [1111] [1112] [1113] [1114] [1115] [1116] [1117] [1118] [1119] [1120] [1121] [1122] Underfull \hbox (badness 1067) in paragraph at lines 4843--4846 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1123] [1124] [1125] [1126] Overfull \hbox (31.3804pt too wide) in paragraph at lines 5059--5059 [] \T1/pcr/m/n/9 width=unit(1, "inches"), height=un it(1, "inches")))[] [1127] [1128] Underfull \hbox (badness 7256) in paragraph at lines 5194--5196 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1129] Overfull \hbox (69.18036pt too wide) in paragraph at lines 5261--5261 []\T1/pcr/m/n/9 grid.text(quote(frac(e^{-x^2/2}, sqrt(2*pi))), x=x, y=y, rot=s tats::runif(20, -45,45),[] [1130] [1131] [1132] [1133] [1134] [1135] Underfull \hbox (badness 2726) in paragraph at lines 5648--5652 []\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 gridCoords []\T1/ptm/m/n/10 a nu-meric ve c-tor. For []\T1/pcr/m/n/10 gridGrobCoords []\T1/ptm/m/n/10 a list Underfull \hbox (badness 1231) in paragraph at lines 5648--5652 \T1/ptm/m/n/10 of []\T1/pcr/m/n/10 "GridCoords" []\T1/ptm/m/n/10 ob-jects. For []\T1/pcr/m/n/10 gridGTreeCoords []\T1/ptm/m/n/10 a list of ei-ther [1136] Underfull \hbox (badness 2080) in paragraph at lines 5730--5735 []\T1/ptm/m/n/10 Either a []\T1/pcr/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 ob -ject (a list of lists with com-po-nents []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 an d []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 ) or a [1137] [1138] [1139] Underfull \hbox (badness 10000) in paragraph at lines 5910--5912 []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 grid.legend()[]\T1/ptm/m/n/10 : all the a r-gu-ments above are passed to [1140] [1141] [1142] [1143] [1144] [1145] [1146] [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7009--7009 []\T1/pcr/m/n/9 unitType(min(unit(1, "in"), unit(1, "npc") + unit(1, "mm")), r ecurse=TRUE)[] [1157] [1158] Overfull \hbox (54.78088pt too wide) in paragraph at lines 7129--7129 []\T1/pcr/m/n/10 viewportTransform(group, shear=groupShear(), flip=groupFlip() , device=TRUE) [1159] Underfull \hbox (badness 1867) in paragraph at lines 7231--7233 []\T1/ptm/m/n/10 This func-tion can be used to gen-er-ate a view-port path for use in []\T1/pcr/m/n/10 downViewport []\T1/ptm/m/n/10 or [1160] Underfull \hbox (badness 10000) in paragraph at lines 7268--7274 [][][]\T1/pcr/m/n/10 viewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 push Viewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 popViewport[][][][]\T1/pt m/m/n/10 , [][][]\T1/pcr/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/ pcr/m/n/10 seekViewport[][][][]\T1/ptm/m/n/10 , [1161] [1162] [1163] Underfull \vbox (badness 10000) has occurred while \output is active [1164] [1165] [1166] Overfull \hbox (25.98041pt too wide) in paragraph at lines 7604--7604 []\T1/pcr/m/n/9 invisible(lapply(trace, function(t) grid.lines(t$x, t$y, gp=gp ar(col="red"))))[] [1167]) (./methods-pkg.tex [1168] Chapter 7. [1169] [1170] Underfull \hbox (badness 1688) in paragraph at lines 166--171 []\T1/ptm/m/n/10 func-tion. See that doc-u-men-ta-tion also for de-tails of how co-erce meth-ods work. Use [1171] [1172] [1173] Underfull \hbox (badness 1348) in paragraph at lines 392--395 [][][]\T1/pcr/m/n/10 GroupGenericFunctions[][][] []\T1/ptm/m/n/10 for other in- for-ma-tion about group generic func-tions; [][]Meth- [1174] [1175] Overfull \hbox (15.18042pt too wide) in paragraph at lines 558--558 []\T1/pcr/m/n/9 ## vector. The next method will always be the default, usuall y a primitive.[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 568--568 []\T1/pcr/m/n/9 ## For arithmetic and one rnum with anything, callNextMethod w ith no arguments[] [1176] Overfull \hbox (4.38043pt too wide) in paragraph at lines 619--619 []\T1/pcr/m/n/9 ## Simple examples to illustrate callNextMethod with and witho ut arguments[] Underfull \vbox (badness 10000) has occurred while \output is active [1177] Overfull \hbox (25.98041pt too wide) in paragraph at lines 637--637 []\T1/pcr/m/n/9 ## call f() with 2 arguments: callNextMethod passes both to th e default method[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 640--640 []\T1/pcr/m/n/9 ## call f() with 1 argument: the default "B0" is not passed b y callNextMethod[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 657--657 []\T1/pcr/m/n/9 ## uses the class of the *argument* to consistently select the "B0" method[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 672--672 []\T1/pcr/m/n/9 ## Although the argument here is numeric, it\TS1/pcr/m/n/9 '\T 1/pcr/m/n/9 s still the "B0" method that\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s called[ ] Underfull \vbox (badness 10000) has occurred while \output is active [1178] [1179] [1180] [1181] [1182] [1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] [1191] [1192] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1792--1792 []\T1/pcr/m/n/9 stopifnot(identical(cc(1:10, 1+1i), sum(1:10, 1+1i))) # the "N umber" method[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1794--1794 []\T1/pcr/m/n/9 stopifnot(identical(cc(1:10, 1+1i, TRUE), c(1:10, 1+1i, TRUE)) ) # the default[] [1193] [1194] Underfull \hbox (badness 10000) in paragraph at lines 1979--1984 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/pcr/m/n/10 insertSource []\T1/ptm/m/n/ 10 can be an ob-ject of class [1195] [1196] [1197] Underfull \hbox (badness 1478) in paragraph at lines 2211--2216 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/pcr/m/n/10 where = [1198] [1199] Underfull \hbox (badness 10000) in paragraph at lines 2325--2329 []\T1/ptm/m/n/10 To see the ac-tual ta-ble (an [][][]\T1/pcr/m/n/10 environment [][][][]\T1/ptm/m/n/10 ) used for meth-ods dis-patch, call Overfull \hbox (78.78088pt too wide) in paragraph at lines 2359--2359 []\T1/pcr/m/n/10 getMethods(f, where, table = FALSE) # deprecated -> use getMe thodsForDispatch()[] [1200] [1201] [1202] Underfull \hbox (badness 3792) in paragraph at lines 2572--2575 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/pcr/m/n/10 setGeneric[][][] []\ T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c re-ate ob-jects of class Underfull \hbox (badness 1194) in paragraph at lines 2603--2607 []\T1/ptm/m/n/10 Object of class []\T1/pcr/m/n/10 "optionalMethod" []\T1/ptm/m/ n/10 (a union of classes []\T1/pcr/m/n/10 "function" []\T1/ptm/m/n/10 and [1203] Overfull \hbox (24.78088pt too wide) in paragraph at lines 2659--2659 []\T1/pcr/m/n/10 removeMethods(f, where = topenv(parent.frame()), all = missin g(where))[] [1204] [1205] [1206] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2882--2882 []\T1/pcr/m/n/9 ## get the function "myFun" -- throw an error if 0 or > 1 vers ions visible:[] [1207] [1208] [1209] [1210] [1211] [1212] [1213] Underfull \hbox (badness 10000) in paragraph at lines 3405--3410 []\T1/ptm/m/n/10 Function []\T1/pcr/m/n/10 implicitGeneric() []\T1/ptm/m/n/10 r e-turns the im-plicit generic ver-sion, Underfull \hbox (badness 6268) in paragraph at lines 3405--3410 []\T1/pcr/m/n/10 setGenericImplicit() []\T1/ptm/m/n/10 turns a generic im-plici t, []\T1/pcr/m/n/10 prohibitGeneric() []\T1/ptm/m/n/10 pre-vents [1214] [1215] Underfull \hbox (badness 10000) in paragraph at lines 3533--3537 []\T1/ptm/m/n/10 For a class (or class def-i-ni-tion, see [][][]\T1/pcr/m/n/10 getClass[][][] []\T1/ptm/m/n/10 and the de-scrip-tion of class [1216] Overfull \hbox (14.78088pt too wide) in paragraph at lines 3642--3651 [] [1217] [1218] Underfull \hbox (badness 10000) in paragraph at lines 3762--3763 [] \T1/pcr/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit ude = Underfull \hbox (badness 10000) in paragraph at lines 3809--3810 []\T1/pcr/m/n/10 setMethod("plot", c("Pos", "missing"), function(x, y, ...) { [1219] Underfull \hbox (badness 10000) in paragraph at lines 3846--3847 []\T1/pcr/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character") , Underfull \hbox (badness 6157) in paragraph at lines 3908--3912 []\T1/ptm/m/n/10 A call to [][][]\T1/pcr/m/n/10 selectSuperClasses[][][](cl) [] \T1/ptm/m/n/10 re-turns a list of su-per-classes, sim-i-larly to [1220] [1221] [1222] [1223] [1224] [1225] Overfull \hbox (18.78088pt too wide) in paragraph at lines 4313--4313 []\T1/pcr/m/n/10 makeClassRepresentation(name, slots=list(), superClasses=char acter(), Overfull \hbox (0.78088pt too wide) in paragraph at lines 4314--4314 [] \T1/pcr/m/n/10 prototype=NULL, package, validity, ac cess,[] [1226] Overfull \hbox (0.78088pt too wide) in paragraph at lines 4371--4371 []\T1/pcr/m/n/10 method.skeleton(generic, signature, file, external = FALSE, w here) [1227] [1228] Underfull \hbox (badness 2126) in paragraph at lines 4516--4524 []\T1/ptm/m/n/10 For ad-di-tional in-for-ma-tion see doc-u-men-ta-tion for the im-por-tant steps: ([][][]\T1/pcr/m/n/10 setMethod[][][]()[]\T1/ptm/m/n/10 , [1229] [1230] Underfull \vbox (badness 5681) has occurred while \output is active [1231] Underfull \hbox (badness 10000) in paragraph at lines 4753--4762 []\T1/ptm/m/n/10 In prin-ci-ple, a generic func-tion could be any func-tion tha t eval-u-ates a call to [1232] [1233] [1234] [1235] [1236] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5137--5137 []\T1/pcr/m/n/9 f3 <- function(x)UseMethod("f3") # an S3 generic to illustrate inheritance[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 5165--5165 []\T1/pcr/m/n/9 stopifnot(identical(abs(y), abs(x))) # (version 2.9.0 or earli er fails here)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5179--5179 []\T1/pcr/m/n/9 ## The S3 method for classA and the closest inherited S3 metho d for classB[] Underfull \vbox (badness 10000) has occurred while \output is active [1237] [1238] Underfull \hbox (badness 10000) in paragraph at lines 5297--5298 []\T1/pcr/m/n/10 unique.uncased <- function(x, incomparables = FALSE, ...) [1239] [1240] Underfull \hbox (badness 3803) in paragraph at lines 5452--5454 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1241] [1242] [1243] Underfull \hbox (badness 1087) in paragraph at lines 5683--5688 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1244] [1245] [1246] [1247] [1248] [1249] Underfull \hbox (badness 10000) in paragraph at lines 6149--6165 []\T1/ptm/m/n/10 The de-fault method for []\T1/pcr/m/n/10 $initialize() []\T1/p tm/m/n/10 is equiv-a-lent to in-vok-ing the method [1250] [1251] Underfull \hbox (badness 1248) in paragraph at lines 6282--6286 []\T1/ptm/m/n/10 Typically, a spe-cial-ized []\T1/pcr/m/n/10 $initialize() []\T 1/ptm/m/n/10 method car-ries out its own com-pu-ta-tions, Underfull \hbox (badness 1960) in paragraph at lines 6282--6286 \T1/ptm/m/n/10 then in-vokes []\T1/pcr/m/n/10 $initFields() []\T1/ptm/m/n/10 to per-form stan-dard ini-tial-iza-tion, as shown in the [1252] Underfull \hbox (badness 4647) in paragraph at lines 6437--6439 []\T1/ptm/m/n/10 This method is equiv-a-lent to call-ing the gen-er-a-tor func- tion re-turned by [1253] [1254] Underfull \hbox (badness 2875) in paragraph at lines 6586--6595 []\T1/ptm/m/n/10 Reference classes can have va-lid-ity meth-ods in the same sen se as any S4 class (see Underfull \hbox (badness 1436) in paragraph at lines 6586--6595 [][][]\T1/pcr/m/n/10 setValidity[][][][]\T1/ptm/m/n/10 ). Such meth-ods are of- ten a good idea; they will be called by call-ing [1255] Underfull \vbox (badness 10000) has occurred while \output is active [1256] [1257] [1258]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.S4}) has been already used, duplicate ignored \relax l.6911 \aliasA{S4}{S3Part}{S4} [1259] Overfull \hbox (66.78088pt too wide) in paragraph at lines 6947--6947 []\T1/pcr/m/n/10 ## Create a new object from the class or use the replacement version of as().[] [1260] [1261] Overfull \hbox (25.98041pt too wide) in paragraph at lines 7138--7138 []\T1/pcr/m/n/9 fit <- lm(sepal ~ Petal.Length + Petal.Width + Species, data = datasets::iris)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 7142--7142 []\T1/pcr/m/n/9 myReg <- setClass("myReg", slots = c(title = "character"), con tains = "mlm")[] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex}) has been already used, duplicate ignored \relax l.7167 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7169 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7170 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.matrixOps}) has been already used, duplicate i gnored \relax l.7172 ...sA{matrixOps}{S4groupGeneric}{matrixOps} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7173 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7174 \aliasA{Summary}{S4groupGeneric}{Summary} [1262] Underfull \hbox (badness 3907) in paragraph at lines 7230--7235 []\T1/ptm/m/n/10 There are also S3 groups []\T1/pcr/m/n/10 Math[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Ops[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Summary[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 Complex []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 matrixOps[ ]\T1/ptm/m/n/10 , see Underfull \hbox (badness 2050) in paragraph at lines 7236--7240 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1263] Underfull \hbox (badness 6708) in paragraph at lines 7249--7261 []\T1/pcr/m/n/10 "abs"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sign"[]\T1/ptm/m/n/1 0 , []\T1/pcr/m/n/10 "sqrt"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ceiling"[]\T1/p tm/m/n/10 , []\T1/pcr/m/n/10 "floor"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "trunc" []\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cummax"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 2012) in paragraph at lines 7249--7261 []\T1/pcr/m/n/10 "acosh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "asin"[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 "asinh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "atan"[]\T1/p tm/m/n/10 , []\T1/pcr/m/n/10 "atanh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "exp"[] \T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "expm1"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "c os"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3209) in paragraph at lines 7249--7261 []\T1/pcr/m/n/10 "cosh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cospi"[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 "sin"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sinh"[]\T1/ptm /m/n/10 , []\T1/pcr/m/n/10 "sinpi"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tan"[]\T 1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tanh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tanp i"[]\T1/ptm/m/n/10 , Overfull \hbox (58.38037pt too wide) in paragraph at lines 7323--7323 []\T1/pcr/m/n/9 selectMethod("Re", signature = "testComplex") # shows Generic: .. "Re" & .."Complex"[] [1264] [1265] Underfull \hbox (badness 1694) in paragraph at lines 7412--7414 []\T1/ptm/m/n/10 name of the class or (more ef-fi-ciently) the class def-i-ni-t ion ob-ject (see Underfull \hbox (badness 10000) in paragraph at lines 7436--7439 []\T1/ptm/m/n/10 The typ-i-cal user level func-tion is []\T1/pcr/m/n/10 selectS uperClasses() []\T1/ptm/m/n/10 which calls [1266] Overfull \hbox (20.58041pt too wide) in paragraph at lines 7457--7457 []\T1/pcr/m/n/9 selectSuperClasses("C", dropVirtual=TRUE, directOnly=FALSE)# d itto w/o "Root"[] [1267] [1268] [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] Overfull \hbox (0.78088pt too wide) in paragraph at lines 8571--8571 []\T1/pcr/m/n/10 setGroupGeneric(name, def= , group=list(), valueClass=charact er(), [1280] [1281] Overfull \hbox (6.78088pt too wide) in paragraph at lines 8646--8646 [] \T1/pcr/m/n/10 by = character(), where = topenv(parent.frame()), class Def =,[] [1282] [1283] [1284] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8908--8908 []\T1/pcr/m/n/9 ## "trackMultiCurve", by making the y, smooth slots into 1-col umn matrices[] [1285] [1286] [1287] Overfull \hbox (4.38043pt too wide) in paragraph at lines 9115--9115 [] \T1/pcr/m/n/9 setLoadAction(function(ns) assign("myCount", 0, envir = ns), "setCount")[] [1288] [1289] Underfull \vbox (badness 2302) has occurred while \output is active [1290] Overfull \hbox (15.18042pt too wide) in paragraph at lines 9377--9377 []\T1/pcr/m/n/9 ## Using a short form for the signature, which matches like fo rmal arguments[] [1291] [1292] [1293] [1294] Overfull \hbox (9.78043pt too wide) in paragraph at lines 9685--9685 []\T1/pcr/m/n/9 ## Define a new generic function to compute the residual degre es of freedom[] [1295] Overfull \hbox (15.18042pt too wide) in paragraph at lines 9795--9795 []\T1/pcr/m/n/9 ## Not run: [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,1 0] [,11] [,12][] [1296] Overfull \hbox (15.18042pt too wide) in paragraph at lines 9806--9806 []\T1/pcr/m/n/9 ## Not run: [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,1 0] [,11] [,12][] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] Underfull \hbox (badness 4193) in paragraph at lines 10440--10443 []\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance in R [][]$\T1/pcr/m/n/10 https : / / johnmchambers . su . [1305] Underfull \hbox (badness 10000) in paragraph at lines 10510--10512 []\T1/ptm/m/n/10 Object of the orig-i-nal class; e.g., []\T1/pcr/m/n/10 "functi on" []\T1/ptm/m/n/10 for class Underfull \hbox (badness 1852) in paragraph at lines 10518--10522 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., Underfull \hbox (badness 1681) in paragraph at lines 10518--10522 []\T1/pcr/m/n/10 "functionWithTrace" []\T1/ptm/m/n/10 ex-tends []\T1/pcr/m/n/10 "function"[]\T1/ptm/m/n/10 . Each of the spe-cific classes ex-tends [1306] [1307] [1308] [1309]) (./parallel-pkg.tex [1310] Chapter 8. Underfull \hbox (badness 2418) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/p cr/m/n/10 "L\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][] RNG[][][]: see [1311] Underfull \hbox (badness 4242) in paragraph at lines 96--98 []\T1/ptm/m/n/10 a vec-tor for []\T1/pcr/m/n/10 clusterApply []\T1/ptm/m/n/10 a nd []\T1/pcr/m/n/10 clusterApplyLB[]\T1/ptm/m/n/10 , a ma-trix for [1312] [1313] Underfull \hbox (badness 1024) in paragraph at lines 213--216 []\T1/ptm/m/n/10 Two ex-cep-tions: []\T1/pcr/m/n/10 parLapply []\T1/ptm/m/n/10 has ar-gu-ment []\T1/pcr/m/n/10 X []\T1/ptm/m/n/10 not []\T1/pcr/m/n/10 x []\T1 /ptm/m/n/10 for con-sis-tency with [][][]\T1/pcr/m/n/10 lapply[][][][]\T1/ptm/m /n/10 , and [1314] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1315] [1316] Underfull \hbox (badness 10000) in paragraph at lines 447--449 []\T1/ptm/m/n/10 Character vec-tor of ad-di-tional ar-gu-ments for []\T1/pcr/m/ n/10 Rscript []\T1/ptm/m/n/10 such as [1317] [1318] [1319] [1320] [1321] Underfull \hbox (badness 1917) in paragraph at lines 795--804 []\T1/pcr/m/n/10 mcfork []\T1/ptm/m/n/10 re-turns an ob-ject of the class []\T1 /pcr/m/n/10 "childProcess" []\T1/ptm/m/n/10 to the mas-ter and of class Underfull \hbox (badness 1178) in paragraph at lines 795--804 []\T1/pcr/m/n/10 "masterProcess" []\T1/ptm/m/n/10 to the child: both the classe s in-herit from class []\T1/pcr/m/n/10 "process"[]\T1/ptm/m/n/10 . If [1322] [1323] Overfull \hbox (60.78088pt too wide) in paragraph at lines 888--888 [] \T1/pcr/m/n/10 mc.cleanup = TRUE, mc.allow.recursive = TRUE, affini ty.list = NULL)[] [1324] [1325] [1326] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1079--1079 []\T1/pcr/m/n/9 mclapply(list(A, A, A), first, mc.preschedule = FALSE, affinit y.list = affL)[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 1083--1083 []\T1/pcr/m/n/9 # To optimize the overall execution time elements of X are sch eduled to suitable CPUs[] [1327] Underfull \hbox (badness 5388) in paragraph at lines 1198--1203 []\T1/pcr/m/n/10 mcparallel []\T1/ptm/m/n/10 re-turns an ob-ject of the class [ ]\T1/pcr/m/n/10 "parallelJob" []\T1/ptm/m/n/10 which in-her-its from [1328] Underfull \hbox (badness 10000) in paragraph at lines 1222--1230 []\T1/ptm/m/n/10 The be-haviour with []\T1/pcr/m/n/10 mc.set.seed = TRUE []\T1/ ptm/m/n/10 is dif-fer-ent only if Overfull \hbox (9.78043pt too wide) in paragraph at lines 1258--1258 []\T1/pcr/m/n/9 mccollect(p, wait = FALSE, 10) # will retrieve the result (sin ce it\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s fast)[] [1329] [1330] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1373--1373 [] \T1/pcr/m/n/9 as.integer(runif(N, 1, 12)), as.integer(runif (N, 1, 28)))[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1387--1387 []\T1/pcr/m/n/9 system.time(c <- unlist(mclapply(dates, as.POSIXct, format = "%Y-%m-%d")))[] [1331] Underfull \hbox (badness 1577) in paragraph at lines 1416--1419 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/pcr/m/n/10 .Random.seed []\T1/ptm/m/n/10 when the Underfull \hbox (badness 3375) in paragraph at lines 1463--1465 []\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 nextRNGStream []\T1/ptm/m/n/10 and []\T1/ pcr/m/n/10 nextRNGSubStream[]\T1/ptm/m/n/10 , a value which can be as-signed to [1332] [1333]) (./splines-pkg.tex [1334] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/pcr/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] Overfull \hbox (4.38043pt too wide) in paragraph at lines 508--508 []\T1/pcr/m/n/9 ispl <- polySpline(interpSpline( weight ~ height, women, bSpl ine = TRUE))[] [1343] Underfull \hbox (badness 1043) in paragraph at lines 609--611 []\T1/ptm/m/n/10 An in-te-ger be-tween 0 and []\T1/pcr/m/n/10 splineOrder(objec t) - 1 []\T1/ptm/m/n/10 spec-i-fy-ing the [1344] [1345] Overfull \hbox (25.98041pt too wide) in paragraph at lines 723--723 []\T1/pcr/m/n/9 Matrix::drop0(zapsmall(6*splineDesign(knots = 1:40, x = 4:37, sparse = TRUE)))[] [1346] [1347] [1348]) (./stats-pkg.tex Chapter 10. [1349] Underfull \hbox (badness 1077) in paragraph at lines 71--74 []\T1/pcr/m/n/10 .MFclass() []\T1/ptm/m/n/10 re-turns a char-ac-ter string, one of []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ordered"[]\T 1/ptm/m/n/10 , []\T1/pcr/m/n/10 "factor"[]\T1/ptm/m/n/10 , Overfull \hbox (69.18036pt too wide) in paragraph at lines 91--91 []\T1/pcr/m/n/9 (xl <- .getXlevels(terms(mf), mf)) # a list with one entry " $ Species" with 3 levels:[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 94--94 [] \T1/pcr/m/n/9 identical(.getXlevels(terms(mc), mc), xl[0]) # a empty named list, as no factors[] [1350] [1351] [1352] [1353] [1354] Overfull \hbox (20.58041pt too wide) in paragraph at lines 445--445 []\T1/pcr/m/n/9 add1(glm.D93, scope = ~outcome*treatment, test = "Rao") ## Pea rson Chi-square[] [1355] Overfull \hbox (6.78088pt too wide) in paragraph at lines 468--468 []\T1/pcr/m/n/10 addmargins(A, margin = seq_along(dim(A)), FUN = sum, quiet = FALSE) [1356] [1357] [1358] [1359] [1360] [1361] Underfull \hbox (badness 1024) in paragraph at lines 901--903 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/pcr/m/n/10 l m []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] Overfull \hbox (12.78088pt too wide) in paragraph at lines 1645--1645 [] \T1/pcr/m/n/10 yleft, yright, rule = 1, f = 0, ties = mean, na.rm = TRUE)[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 1648--1648 [] \T1/pcr/m/n/10 yleft, yright, rule = 1, f = 0, ties = mean, na.rm = TRUE)[] [1374] [1375] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1795--1795 [] \T1/pcr/m/n/9 approx(xn, yn, xout=xout, method=M, rule=R, n a.rm=na.)$y),[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 1807--1807 []\T1/pcr/m/n/9 (amy <- approx(x, y, xout = x)$y) # warning, can be avoided by specifying \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ties=\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 :[ ] [1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2826--2826 []\T1/pcr/m/n/10 ARMAacf(ar = numeric(), ma = numeric(), lag.max = r, pacf = F ALSE) [1391] [1392] [1393] [1394] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3081--3081 []\T1/pcr/m/n/9 lines(ave(breaks, wool, tension, FUN = median), type = "s", co l = "green")[] [1395] [1396] [1397] Underfull \hbox (badness 10000) in paragraph at lines 3295--3297 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Bartlett test of homo geneity of [1398] Overfull \hbox (6.78088pt too wide) in paragraph at lines 3344--3344 []\T1/pcr/m/n/10 pbeta(q, shape1, shape2, ncp = 0, lower.tail = TRUE, log.p = FALSE)[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 3345--3345 []\T1/pcr/m/n/10 qbeta(p, shape1, shape2, ncp = 0, lower.tail = TRUE, log.p = FALSE)[] [1399] [1400] [1401] [1402] Package amsmath Warning: Foreign command \atopwithdelims; (amsmath) \frac or \genfrac should be used instead (amsmath) on input line 3684. [1403] Overfull \hbox (9.78043pt too wide) in paragraph at lines 3750--3750 []\T1/pcr/m/n/9 plot (k, dbinom(k, n, pi/10, log = TRUE), type = "l", ylab = " log density",[] [1404] [1405] [1406] [1407] Overfull \hbox (12.78088pt too wide) in paragraph at lines 4029--4029 []\T1/pcr/m/n/10 Box.test(x, lag = 1, type = c("Box-Pierce", "Ljung-Box"), fit df = 0) [1408] [1409] [1410] [1411] [1412] Overfull \hbox (18.78088pt too wide) in paragraph at lines 4318--4318 []\T1/pcr/m/n/10 pcauchy(q, location = 0, scale = 1, lower.tail = TRUE, log.p = FALSE)[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 4319--4319 []\T1/pcr/m/n/10 qcauchy(p, location = 0, scale = 1, lower.tail = TRUE, log.p = FALSE)[] [1413] [1414] [1415] [1416] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4560--4560 []\T1/pcr/m/n/9 chisq.test(x, p = p) # maybe doubtful , but is ok![] [1417] [1418] Overfull \hbox (20.58041pt too wide) in paragraph at lines 4735--4735 [] \T1/pcr/m/n/9 plot(pp, sort(pchisq(rr <- rchisq(n, df = df, ncp = L), df = df, ncp = L)),[] [1419] [1420] Underfull \hbox (badness 3989) in paragraph at lines 4830--4837 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1421] [1422] [1423] Overfull \hbox (66.78088pt too wide) in paragraph at lines 5058--5058 []\T1/pcr/m/n/10 confint(object, parm, level = 0.95, trace = FALSE, test=c("LR T", "Rao"), ...)[] [1424] [1425] Overfull \hbox (25.98041pt too wide) in paragraph at lines 5232--5232 []\T1/pcr/m/n/9 constrOptim(c(-1.2,0.9), fr, grr, ui = rbind(c(-1,0), c(0,-1)) , ci = c(-1,-1))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5234--5234 []\T1/pcr/m/n/9 constrOptim(c(.5,0), fr, grr, ui = rbind(c(-1,0), c(1,-1)), ci = c(-0.9,0.1))[] [1426] [1427] [1428] [1429] Overfull \hbox (9.78043pt too wide) in paragraph at lines 5456--5456 []\T1/pcr/m/n/9 ## using sparse contrasts: % useful, once model.matrix() works with these :[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 5474--5474 []\T1/pcr/m/n/10 convolve(x, y, conj = TRUE, type = c("circular", "open", "fil ter")) [1430] [1431] [1432] Underfull \hbox (badness 1436) in paragraph at lines 5684--5689 []\T1/ptm/m/n/10 an op-tional char-ac-ter string giv-ing a method for com-put-i ng co-vari-ances Underfull \hbox (badness 1377) in paragraph at lines 5684--5689 \T1/ptm/m/n/10 in the pres-ence of miss-ing val-ues. This must be (an ab-bre-vi -a-tion of) Underfull \hbox (badness 1448) in paragraph at lines 5684--5689 \T1/ptm/m/n/10 one of the strings []\T1/pcr/m/n/10 "everything"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "all.obs"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "complete.obs" []\T1/ptm/m/n/10 , [1433] [1434] Underfull \vbox (badness 10000) has occurred while \output is active [1435] Overfull \hbox (0.78088pt too wide) in paragraph at lines 5885--5885 [] \T1/pcr/m/n/10 exact = NULL, conf.level = 0.95, continuity = FALSE, ...)[] [1436] [1437] Overfull \hbox (6.78088pt too wide) in paragraph at lines 6052--6052 []\T1/pcr/m/n/10 cov.wt(x, wt = rep(1/nrow(x), nrow(x)), cor = FALSE, center = TRUE, [1438] [1439] [1440] Overfull \hbox (6.78088pt too wide) in paragraph at lines 6236--6236 []\T1/pcr/m/n/10 decompose(x, type = c("additive", "multiplicative"), filter = NULL) [1441] [1442] Overfull \hbox (84.78088pt too wide) in paragraph at lines 6345--6345 []\T1/pcr/m/n/10 reformulate(termlabels, response = NULL, intercept = TRUE, en v = parent.frame())[] Underfull \hbox (badness 10000) in paragraph at lines 6364--6369 []\T1/ptm/m/n/10 a nu-meric vec-tor in-dex-ing []\T1/pcr/m/n/10 labels(termobj) []\T1/ptm/m/n/10 (that is, the [1443] [1444] [1445] [1446] Underfull \hbox (badness 5954) in paragraph at lines 6614--6616 []\T1/ptm/m/n/10 logical in-di-cat-ing if a box around the plot should be drawn , see [1447] Underfull \hbox (badness 2503) in paragraph at lines 6695--6698 []\T1/ptm/m/n/10 Objects of class []\T1/pcr/m/n/10 "hclust" []\T1/ptm/m/n/10 ca n be con-verted to class []\T1/pcr/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 5563) in paragraph at lines 6699--6701 []\T1/pcr/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g ram []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also Underfull \hbox (badness 1655) in paragraph at lines 6702--6707 \T1/ptm/m/n/10 has []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 y [ ]\T1/ptm/m/n/10 (and op-tional fur-ther ar-gu-ments) as branches. Note that be- fore \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.1.2, [1448] Underfull \hbox (badness 7238) in paragraph at lines 6738--6741 [][][]\T1/pcr/m/n/10 dendrapply[][][] []\T1/ptm/m/n/10 for ap-ply-ing a func-ti on to \T1/ptm/m/it/10 each \T1/ptm/m/n/10 node. [][][]\T1/pcr/m/n/10 order.dend rogram[][][] []\T1/ptm/m/n/10 and Overfull \hbox (4.38043pt too wide) in paragraph at lines 6750--6750 []\T1/pcr/m/n/9 str(dend1, max.level = 2, last.str = "\TS1/pcr/m/n/9 '\T1/pcr /m/n/9 ") # only the first two sub-levels[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6773--6773 []\T1/pcr/m/n/9 plot(dend2$lower[[3]], nodePar = list(col = 4), horiz = TRUE, type = "tr")[] [1449] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6788--6788 []\T1/pcr/m/n/9 ## merge() all parts back (using default \TS1/pcr/m/n/9 '\T1/p cr/m/n/9 height\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 instead of original one):[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6803--6803 []\T1/pcr/m/n/9 plot(d3, nodePar= nP, edgePar = list(col = "gray", lwd = 2), h oriz = TRUE)[] [1450] [1451] [1452] [1453] Overfull \hbox (25.98041pt too wide) in paragraph at lines 7088--7088 []\T1/pcr/m/n/9 abline(h = 1/1022, v = range(x), lty=2); axis(2, at=1/1022, "1 /(2n-2)", las=1)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7093--7093 [] \T1/pcr/m/n/9 function(k) density(kernel = k, give.Rker n = TRUE))))[] [1454] [1455] [1456] [1457] [1458] [1459] Underfull \hbox (badness 10000) in paragraph at lines 7493--7497 []\T1/pcr/m/n/10 "maximum"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "manhattan"[]\T1/ ptm/m/n/10 , []\T1/pcr/m/n/10 "canberra"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "bi nary" []\T1/ptm/m/n/10 or [1460] Underfull \hbox (badness 6493) in paragraph at lines 7595--7598 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from []\T1/ pcr/m/n/10 dist()[]\T1/ptm/m/n/10 , the [1461] [1462] Underfull \hbox (badness 10000) in paragraph at lines 7732--7735 []\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/pcr/m/n/10 ht tps : / / CRAN . R-[]project . org / view = [1463] [1464] [1465] [1466] [1467] [1468] [1469] Underfull \hbox (badness 10000) in paragraph at lines 8144--8149 []\T1/ptm/m/n/10 Each row of the re-sult-ing ma-trix con-sists of se-quences [] \T1/pcr/m/n/10 x[t][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 x[t-1][]\T1/ptm/m/n/10 , ..., [1470] [1471] [1472] [1473] [1474] Underfull \hbox (badness 1107) in paragraph at lines 8472--8475 []\T1/ptm/m/n/10 the [][][]\T1/pcr/m/n/10 na.action[][][] []\T1/ptm/m/n/10 to b e used if []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 is used as a for-mula, in which c ase [1475] [1476] [1477] [1478] [1479] [1480] [1481] Overfull \hbox (15.18042pt too wide) in paragraph at lines 8970--8970 []\T1/pcr/m/n/9 glm.qD93 <- glm(counts ~ outcome + treatment, d.AD, family = q uasipoisson())[] Underfull \vbox (badness 10000) has occurred while \output is active [1482] Overfull \hbox (31.3804pt too wide) in paragraph at lines 9015--9015 []\T1/pcr/m/n/9 ## Not run: glm(y ~ x, family = quasi(variance = "mu^3", link = "log")) # fails[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 9018--9018 []\T1/pcr/m/n/9 glm(y ~ x, family = quasi(variance = "mu(1-mu)", link = "logit "), start = c(0,1))[] [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] Overfull \hbox (15.18042pt too wide) in paragraph at lines 9591--9591 [] \T1/pcr/m/n/9 dimnames = list(income = c("< 15k", "15-25k", "25-4 0k", "> 40k"),[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 9592--9592 [] \T1/pcr/m/n/9 satisfaction = c("VeryD", "LittleD", "Mod erateS", "VeryS")))[] [1491] [1492] [1493] Underfull \hbox (badness 7291) in paragraph at lines 9772--9774 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Fligner-Killeen test of homogeneity of [1494] [1495] [1496] [1497] [1498] [1499] [1500] Underfull \hbox (badness 6944) in paragraph at lines 10265--10271 [][][]\T1/pcr/m/n/10 ftable.formula[][][] []\T1/ptm/m/n/10 for the for-mula in- ter-face (which al-lows a []\T1/pcr/m/n/10 data = . []\T1/ptm/m/n/10 ar-gu-ment ); [1501] [1502] [1503] Underfull \hbox (badness 3758) in paragraph at lines 10479--10482 []\T1/ptm/m/n/10 See also [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [1504] [1505] [1506] [1507] Overfull \hbox (6.78088pt too wide) in paragraph at lines 10724--10724 [] \T1/pcr/m/n/10 x = FALSE, y = TRUE, singular.ok = TRUE, contrasts = NULL , ...)[] Underfull \hbox (badness 4518) in paragraph at lines 10750--10755 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1508] Underfull \hbox (badness 4132) in paragraph at lines 10791--10795 []\T1/ptm/m/n/10 the method to be used in fit-ting the model. The de-fault meth od Underfull \hbox (badness 1112) in paragraph at lines 10845--10851 []\T1/ptm/m/n/10 A spec-i-fi-ca-tion of the form []\T1/pcr/m/n/10 first:second []\T1/ptm/m/n/10 in-di-cates the set of terms ob-tained by tak- [1509] Underfull \hbox (badness 10000) in paragraph at lines 10901--10904 []\T1/ptm/m/n/10 The generic ac-ces-sor func-tions [][][]\T1/pcr/m/n/10 coeffic ients[][][][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 effects[]\T1/ptm/m/n/10 , []\T1/ pcr/m/n/10 fitted.values []\T1/ptm/m/n/10 and [1510] [1511] [1512] Underfull \hbox (badness 2142) in paragraph at lines 11118--11121 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ [1513] Underfull \hbox (badness 1708) in paragraph at lines 11199--11203 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1514] Underfull \hbox (badness 10000) in paragraph at lines 11241--11247 [][][]\T1/pcr/m/n/10 glm[][][] []\T1/ptm/m/n/10 for com-put-ing []\T1/pcr/m/n/1 0 glm.obj[]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 anova.glm[][][][]\T1/ptm/m/n/1 0 ; the cor-re-spond-ing \T1/ptm/m/it/10 generic \T1/ptm/m/n/10 func-tions, Underfull \hbox (badness 1418) in paragraph at lines 11279--11284 []\T1/pcr/m/n/10 "average" []\T1/ptm/m/n/10 (= UP-GMA), []\T1/pcr/m/n/10 "mcqui tty" []\T1/ptm/m/n/10 (= WPGMA), []\T1/pcr/m/n/10 "median" []\T1/ptm/m/n/10 (= [1515] [1516] Underfull \hbox (badness 2635) in paragraph at lines 11412--11415 \T1/ptm/m/n/10 There are [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/n/10 , [][ ][]\T1/pcr/m/n/10 plot[][][] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 identify []\ T1/ptm/m/n/10 (see [][][]\T1/pcr/m/n/10 identify.hclust[][][][]\T1/ptm/m/n/10 ) meth-ods and the [1517] [1518] [1519] Underfull \hbox (badness 1694) in paragraph at lines 11597--11600 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1520] [1521] Overfull \hbox (25.98041pt too wide) in paragraph at lines 11710--11710 []\T1/pcr/m/n/9 heatmap(Ca, Rowv = FALSE, symm = TRUE, RowSideColors = cc, Col SideColors = cc,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 11743--11743 [] \T1/pcr/m/n/10 optim.start = c(alpha = 0.3, beta = 0.1, gamma = 0.1),[] Underfull \hbox (badness 10000) in paragraph at lines 11756--11760 []\T1/ptm/m/n/10 Character string to se-lect an []\T1/pcr/m/n/10 "additive" []\ T1/ptm/m/n/10 (the de-fault) or [1522] [1523] [1524] [1525] [1526] [1527] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12080--12080 []\T1/pcr/m/n/9 identify(hci, function(k) barplot(table(iris[k,5]), col = 2:4) , DEV.FUN = nD)[] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has been already used, duplicate ignored \relax l.12095 \aliasA{hat}{influence.measures}{hat} [1528] Overfull \hbox (0.78088pt too wide) in paragraph at lines 12158--12158 []\T1/pcr/m/n/10 cooks.distance(model, infl = lm.influence(model, do.coef = FA LSE),[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 12170--12170 []\T1/pcr/m/n/10 hatvalues(model, infl = lm.influence(model, do.coef = FALSE), ...)[] [1529] Underfull \hbox (badness 1062) in paragraph at lines 12223--12228 []\T1/ptm/m/n/10 The op-tional []\T1/pcr/m/n/10 infl[]\T1/ptm/m/n/10 , []\T1/pc r/m/n/10 res []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 sd []\T1/ptm/m/n/10 ar-gu-me nts are there to en-cour-age the use of these di- Underfull \hbox (badness 1052) in paragraph at lines 12240--12242 []\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1530] Underfull \vbox (badness 10000) has occurred while \output is active [1531] [1532] [1533] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12476--12476 []\T1/pcr/m/n/9 integrate(dnorm, 0, 20000) ## "fails" on many systems -- "wron gly" giving \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 0\TS1/pcr/m/n/9 '[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 12495--12495 [] \T1/pcr/m/n/10 type = c("l", "p", "b", "o", "c"), legend = TRUE,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 12496--12496 [] \T1/pcr/m/n/10 trace.label = deparse1(substitute(trace.fact or)),[] [1534] [1535] [1536] [1537] [1538] Underfull \hbox (badness 10000) in paragraph at lines 12827--12829 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/pcr/m/n/10 solve.de fault[][][] []\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 SSinit = Underfull \hbox (badness 4739) in paragraph at lines 12850--12852 []\T1/ptm/m/n/10 the es-ti-mate at time $\OML/cmm/m/it/10 t \OMS/cmsy/m/n/10 ^^ @ \OT1/cmr/m/n/10 1$ \T1/ptm/m/n/10 of the state un-cer-tainty ma-trix $\OML/cm m/m/it/10 Q$ \T1/ptm/m/n/10 (not up-dated by [1539] [1540] [1541] [1542] [1543] Underfull \hbox (badness 3417) in paragraph at lines 13163--13165 []\T1/ptm/m/n/10 an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of class []\T1/pcr/ m/n/10 "kmeans"[]\T1/ptm/m/n/10 , typ-i-cally the re-sult []\T1/pcr/m/n/10 ob [ ]\T1/ptm/m/n/10 of []\T1/pcr/m/n/10 ob <- Underfull \hbox (badness 2894) in paragraph at lines 13169--13173 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method Underfull \hbox (badness 1038) in paragraph at lines 13169--13173 \T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 "Hartigan-Wong"[]\T1/ptm/m/n/10 ): if pos-i-ti ve (or true), trac-ing in-for-ma-tion on the [1544] [1545] [1546] [1547] [1548] [1549] Underfull \hbox (badness 1496) in paragraph at lines 13597--13603 []\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran- dom-iza-tion Dis-tri-bu-tions of [1550] [1551] [1552] [1553] Overfull \hbox (4.38043pt too wide) in paragraph at lines 13852--13852 []\T1/pcr/m/n/9 lag.plot(sqrt(sunspots), set.lags = c(1:4, 9:12), pch = ".", c ol = "gold")[] [1554] [1555] Overfull \hbox (9.78043pt too wide) in paragraph at lines 13952--13952 []\T1/pcr/m/n/9 dimnames(cAS) <- list(paste("it =", format(1:10)), c("intercep t", "slope"))[] Underfull \hbox (badness 4518) in paragraph at lines 14000--14005 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1556] [1557] [1558] Underfull \hbox (badness 10000) in paragraph at lines 14203--14207 []\T1/ptm/m/n/10 More []\T1/pcr/m/n/10 lm() []\T1/ptm/m/n/10 ex-am-ples are ava il-able e.g., in [][][]\T1/pcr/m/n/10 anscombe[][][][]\T1/ptm/m/n/10 , [][][]\T 1/pcr/m/n/10 attitude[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 freeny[][][] []\T1/ptm/m/n/10 , [1559] [1560] [1561] [1562] [1563] [1564] Underfull \hbox (badness 1163) in paragraph at lines 14570--14578 \T1/ptm/m/n/10 els, [][][]\T1/pcr/m/n/10 influence[][][] []\T1/ptm/m/n/10 (etc on that page) for re-gres-sion di-ag-nos-tics, [][][]\T1/pcr/m/n/10 weighted.re siduals[][][][]\T1/ptm/m/n/10 , [1565] Underfull \hbox (badness 4518) in paragraph at lines 14692--14697 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1566] [1567] [1568] Overfull \hbox (12.78088pt too wide) in paragraph at lines 14882--14882 []\T1/pcr/m/n/10 plogis(q, location = 0, scale = 1, lower.tail = TRUE, log.p = FALSE)[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 14883--14883 []\T1/pcr/m/n/10 qlogis(p, location = 0, scale = 1, lower.tail = TRUE, log.p = FALSE)[] [1569] [1570] [1571] [1572] [1573] Overfull \hbox (6.78088pt too wide) in paragraph at lines 15227--15227 []\T1/pcr/m/n/10 plnorm(q, meanlog = 0, sdlog = 1, lower.tail = TRUE, log.p = FALSE)[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 15228--15228 []\T1/pcr/m/n/10 qlnorm(p, meanlog = 0, sdlog = 1, lower.tail = TRUE, log.p = FALSE)[] [1574] [1575] Overfull \hbox (18.78088pt too wide) in paragraph at lines 15321--15321 []\T1/pcr/m/n/10 lowess(x, y = NULL, f = 2/3, iter = 3, delta = 0.01 * diff(ra nge(x))) [1576] [1577] [1578] [1579] [1580] [1581] Underfull \hbox (badness 2726) in paragraph at lines 15730--15733 []\T1/ptm/m/n/10 character; one of []\T1/pcr/m/n/10 "logit"[]\T1/ptm/m/n/10 , [ ]\T1/pcr/m/n/10 "probit"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cauchit"[]\T1/ptm/ m/n/10 , []\T1/pcr/m/n/10 "cloglog"[]\T1/ptm/m/n/10 , [1582] Overfull \hbox (4.38043pt too wide) in paragraph at lines 15824--15824 []\T1/pcr/m/n/9 stopifnot(all.equal(pfm, pf2)) ## was off (rel.diff. 0.0766) i n R <= 3.5.0[] [1583] [1584] [1585] [1586] [1587] Overfull \hbox (42.78088pt too wide) in paragraph at lines 16081--16081 [] \T1/pcr/m/n/10 T = Thin.row(Proj(M) - Proj(X)), M = diag(nrow = p), X = ~0,[] [1588] [1589] [1590] [1591] [1592] Overfull \hbox (31.3804pt too wide) in paragraph at lines 16454--16454 []\T1/pcr/m/n/9 a <- model.frame(cbind(ncases,ncontrols) ~ agegp + tobgp + alc gp, data = esoph) [1593] [1594] Underfull \hbox (badness 1490) in paragraph at lines 16607--16612 \T1/ptm/m/n/10 those spec-i-fied in []\T1/pcr/m/n/10 ... []\T1/ptm/m/n/10 which are re-cy-cled to the num-ber of data frame rows. Un-like [1595] Overfull \hbox (4.38043pt too wide) in paragraph at lines 16643--16643 []\T1/pcr/m/n/9 model.frame(dist ~ speed, data = cars, subset = speed < 10, z = log(dist))[] Underfull \hbox (badness 1648) in paragraph at lines 16679--16681 []\T1/ptm/m/n/10 a data frame cre-ated with [][][]\T1/pcr/m/n/10 model.frame[][ ][][]\T1/ptm/m/n/10 . If an-other sort of ob-ject, [1596] Overfull \hbox (36.7804pt too wide) in paragraph at lines 16764--16764 []\T1/pcr/m/n/9 model.matrix(~ a + b, dd, contrasts.arg = list(a = "contr.sum" , b = contr.poly))[] [1597] Overfull \hbox (9.78043pt too wide) in paragraph at lines 16765--16765 []\T1/pcr/m/n/9 m.orth <- model.matrix(~a+b, dd, contrasts.arg = list(a = "con tr.helmert"))[] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605] Overfull \hbox (9.78043pt too wide) in paragraph at lines 17320--17320 []\T1/pcr/m/n/9 stopifnot(all(na.omit(1:3) == 1:3)) # does not affect objects with no NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s[] [1606] [1607] [1608] Overfull \hbox (25.98041pt too wide) in paragraph at lines 17553--17553 []\T1/pcr/m/n/9 persp(x, size, dnb <- outer(x, size, function(x,s) dnbinom(x, s, prob = 0.4)),[] [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616] [1617] [1618] Underfull \vbox (badness 10000) has occurred while \output is active [1619] Overfull \hbox (42.18039pt too wide) in paragraph at lines 18273--18273 []\T1/pcr/m/n/9 ## adjusting the convergence test by adding \TS1/pcr/m/n/9 '\T 1/pcr/m/n/9 scaleOffset\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 to its denominator RSS:[] Underfull \vbox (badness 10000) has occurred while \output is active [1620] Overfull \hbox (74.58035pt too wide) in paragraph at lines 18292--18292 []\T1/pcr/m/n/9 ## Here, requiring close convergence, must use more accurate n umerical differentiation,[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 18293--18293 []\T1/pcr/m/n/9 ## as this typically gives Error: "step factor .. reduced belo w \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 minFactor\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 .."[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 18297--18297 []\T1/pcr/m/n/9 ## central differencing works here typically (PR#18165: not co nverging on *some*):[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 18298--18298 []\T1/pcr/m/n/9 ctr2 <- nls.control(nDcentral=TRUE, tol = 8e-8, # <- even smal ler than above[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 18301--18301 [] \T1/pcr/m/n/9 (grepl("^aarch64.*linux", R.version$platform) && grepl ("^NixOS", osVersion)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 18333--18333 [] \T1/pcr/m/n/9 start = list(a = rep(b[2], 21), b = rep(b[3], 21 ), th = b[1]))[] [1621] [1622] [1623] Overfull \hbox (9.78043pt too wide) in paragraph at lines 18509--18509 []\T1/pcr/m/n/9 DN.srt <- sortedXyData(expression(log(conc)), expression(densi ty), DNase.2)[] [1624] Overfull \hbox (20.58041pt too wide) in paragraph at lines 18556--18556 []\T1/pcr/m/n/9 DN.srt <- sortedXyData( expression(log(conc)), expression(dens ity), DNase.2 )[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 18603--18603 []\T1/pcr/m/n/9 DN.srt <- sortedXyData( expression(log(conc)), expression(dens ity), DNase.2 )[] [1625] [1626] [1627] [1628] Overfull \hbox (102.78088pt too wide) in paragraph at lines 18820--18820 [] \T1/pcr/m/n/10 eps = .Machine$double.eps ^ (1/if(central) 3 els e 2), central = FALSE)[] [1629] [1630] [1631] [1632] Underfull \hbox (badness 10000) in paragraph at lines 19105--19111 []\T1/ptm/m/n/10 Method []\T1/pcr/m/n/10 "Brent" []\T1/ptm/m/n/10 is for one-di mensional prob-lems only, us-ing [][][]\T1/pcr/m/n/10 optimize[][][](, [1633] Underfull \hbox (badness 1248) in paragraph at lines 19141--19144 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 1661) in paragraph at lines 19154--19158 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 1478) in paragraph at lines 19162--19166 \T1/ptm/m/n/10 if []\T1/pcr/m/n/10 control$trace []\T1/ptm/m/n/10 is pos-i-tive . De-faults to ev-ery 10 it-er-a-tions for []\T1/pcr/m/n/10 "BFGS" []\T1/ptm/m/ n/10 and [1634] Underfull \hbox (badness 2042) in paragraph at lines 19220--19222 []\T1/ptm/m/n/10 indicates an er-ror from the []\T1/pcr/m/n/10 "L-BFGS-B" []\T1 /ptm/m/n/10 method; see com-po-nent [1635] Overfull \hbox (15.18042pt too wide) in paragraph at lines 19326--19326 [] \T1/pcr/m/n/9 lower = rep(2, 25), upper = rep(4, 25)) # par[24] is *no t* at boundary[] [1636] Overfull \hbox (9.78043pt too wide) in paragraph at lines 19369--19369 [] \T1/pcr/m/n/9 main = "initial solution of traveling salesman problem", axes = FALSE)[] Overfull \hbox (123.1803pt too wide) in paragraph at lines 19387--19387 []\T1/pcr/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (96.18033pt too wide) in paragraph at lines 19390--19390 []\T1/pcr/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1637] Overfull \hbox (36.78088pt too wide) in paragraph at lines 19410--19410 []\T1/pcr/m/n/10 optimize(f, interval, ..., lower = min(interval), upper = max (interval), Overfull \hbox (36.78088pt too wide) in paragraph at lines 19413--19413 []\T1/pcr/m/n/10 optimise(f, interval, ..., lower = min(interval), upper = max (interval),[] Underfull \hbox (badness 2564) in paragraph at lines 19448--19459 []\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 f []\T1/ptm/m/n/10 is never eva l-u-ated at two points closer to-gether than $\OML/cmm/m/it/10 ^^O$$\OMS/cmsy/m /n/10 j\OML/cmm/m/it/10 x[]\OMS/cmsy/m/n/10 j \OT1/cmr/m/n/10 + (\OML/cmm/m/it/ 10 tol=\OT1/cmr/m/n/10 3)$\T1/ptm/m/n/10 , Underfull \hbox (badness 1082) in paragraph at lines 19448--19459 \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 ^^O$ \T1/ptm/m/n/10 is ap-prox-i-mately []\T1/pcr/m/n/10 sqrt([][].Machine[][][]$double.eps) []\T1/ptm/m/n/10 and $\OML /cmm/m/it/10 x[]$ \T1/ptm/m/n/10 is the fi-nal ab-scissa [1638] Overfull \hbox (9.78043pt too wide) in paragraph at lines 19511--19511 []\T1/pcr/m/n/9 f <- function(x) ifelse(x > -1, ifelse(x < 4, exp(-1/abs(x - 1)), 10), 10)[] [1639] [1640] [1641] Overfull \hbox (9.78043pt too wide) in paragraph at lines 19741--19741 []\T1/pcr/m/n/9 matplot(p, p.adj, ylab="p.adjust(p, meth)", type = "l", asp = 1, lty = 1:6,[] [1642] [1643] Underfull \hbox (badness 1337) in paragraph at lines 19852--19855 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1644] [1645] [1646] [1647] [1648] Overfull \hbox (0.78088pt too wide) in paragraph at lines 20170--20170 [] \T1/pcr/m/n/10 par.fit = list(col = "red", cex = 1.5, pch = 13, lwd = 1.5),[] [1649] [1650] Overfull \hbox (24.78088pt too wide) in paragraph at lines 20257--20257 [] \T1/pcr/m/n/10 expression("Cook\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 s dist vs Leverage* " * h[ii] / (1 - h[ii]))),[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 20259--20259 [] \T1/pcr/m/n/10 panel.smooth(x, y, iter=iter.smooth, ...) else points,[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 20261--20261 [] \T1/pcr/m/n/10 ask = prod(par("mfcol")) < length(which) && dev.interact ive(),[] [1651] Underfull \hbox (badness 10000) in paragraph at lines 20321--20327 \T1/pcr/m/n/10 "bottomleft", legend = "Cook\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 s di stance", lty = cook.lty, Underfull \hbox (badness 10000) in paragraph at lines 20321--20327 \T1/pcr/m/n/10 col = cook.col, text.col = cook.col, bty = "n", x.intersp Underfull \hbox (badness 10000) in paragraph at lines 20329--20335 []\T1/ptm/m/n/10 the num-ber of ro-bust-ness it-er-a-tions, the ar-gu-ment []\T 1/pcr/m/n/10 iter []\T1/ptm/m/n/10 in Underfull \hbox (badness 10000) in paragraph at lines 20340--20343 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 1 or 2, to be used in []\T1/pcr/m /n/10 ylim <- [1652] [1653] [1654] [1655] Overfull \hbox (9.78043pt too wide) in paragraph at lines 20607--20607 []\T1/pcr/m/n/9 nlmod <- nls(y ~ Const + A * exp(B * x), start=list(Const=100 , A=10, B=1))[] [1656] [1657] Overfull \hbox (0.78088pt too wide) in paragraph at lines 20738--20738 [] \T1/pcr/m/n/10 main = NULL, ci.col = "blue", ci.lty = 3, ...)[] [1658] Underfull \hbox (badness 1194) in paragraph at lines 20748--20751 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1659] Underfull \hbox (badness 1107) in paragraph at lines 20806--20808 []\T1/ptm/m/n/10 numeric vec-tor of ab-scissa val-ues at which to eval-u-ate [] \T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . De-faults to Overfull \hbox (20.58041pt too wide) in paragraph at lines 20861--20861 []\T1/pcr/m/n/9 plot(sfun.2);plot(sfun.2, xval = tt, add = TRUE, col = "orange ") # all colors[] [1660] Overfull \hbox (31.3804pt too wide) in paragraph at lines 20868--20868 []\T1/pcr/m/n/9 legend(2.5, 1.9, paste("f =", c(0, 0.2, 1)), col = 1:3, lty = 1, y.intersp = 1)[] [1661] Overfull \hbox (20.58041pt too wide) in paragraph at lines 20962--20962 []\T1/pcr/m/n/9 title("plot(ts(..), axes=FALSE, ann=FALSE, frame.plot=TRUE, ma r..., oma...)")[] [1662] [1663] Overfull \hbox (4.38043pt too wide) in paragraph at lines 21090--21090 [] \T1/pcr/m/n/9 ppois(10*(15:25), lambda = 100, lower.tail = FALSE) # no cancellation[] [1664] Underfull \hbox (badness 7740) in paragraph at lines 21153--21155 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Exact Poisson test" [ ]\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 "Comparison of [1665] Overfull \hbox (6.78088pt too wide) in paragraph at lines 21201--21201 []\T1/pcr/m/n/10 poly(x, ..., degree = 1, coefs = NULL, raw = FALSE, simple = FALSE) [1666] Underfull \hbox (badness 10000) in paragraph at lines 21262--21264 []\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 poly(*, simple=TRUE)[]\T1/ptm/m/n/10 , [] \T1/pcr/m/n/10 polym(*, coefs=)[]\T1/ptm/m/n/10 , and Overfull \hbox (4.38043pt too wide) in paragraph at lines 21299--21299 [] \T1/pcr/m/n/9 zm <- zapsmall(polym ( 1:4, c(1, 4:6), degree = 3)) # or just poly():[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 21304--21304 []\T1/pcr/m/n/9 ## poly(, df) --- used to fail till July 14 (vive la F rance!), 2017:[] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] Overfull \hbox (58.38037pt too wide) in paragraph at lines 22158--22158 [] \T1/pcr/m/n/9 all.equal(pz3$sdev, pZ$sdev, tolerance = 1e-15)) # e xactly equal typically[] [1681] Underfull \hbox (badness 6859) in paragraph at lines 22225--22232 [][][]\T1/pcr/m/n/10 predict.glm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 p redict.lm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.loess[][][][]\T1 /ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.nls[][][][]\T1/ptm/m/n/10 , [][][]\T 1/pcr/m/n/10 predict.poly[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 22236--22242 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/pcr/m/n/10 predict.ar[ ][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/pcr/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1682] [1683] [1684] [1685] [1686] Overfull \hbox (54.78088pt too wide) in paragraph at lines 22524--22524 [] \T1/pcr/m/n/10 rankdeficient = c("warnif", "simple", "non-estim", "N A", "NAwarn"),[] Underfull \hbox (badness 10000) in paragraph at lines 22550--22553 []\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string spec-i-fy-ing what should hap-pen in the Underfull \hbox (badness 10000) in paragraph at lines 22550--22553 \T1/ptm/m/n/10 case of a rank de-fi-cient model, i.e., when []\T1/pcr/m/n/10 ob ject$rank < Underfull \hbox (badness 5832) in paragraph at lines 22555--22560 \T1/ptm/m/n/10 cases, i.e., vec-tors not in the same pre-dic-tor sub-space as t he Underfull \hbox (badness 8151) in paragraph at lines 22555--22560 \T1/ptm/m/n/10 orig-i-nal data (with tol-er-ance []\T1/pcr/m/n/10 tol[]\T1/ptm/ m/n/10 ). In that case, the non- Underfull \hbox (badness 1184) in paragraph at lines 22555--22560 \T1/ptm/m/n/10 estimable in-dices are also re-turned as at-tribute []\T1/pcr/m/ n/10 "non-estim" []\T1/ptm/m/n/10 (see [1687] [1688] [1689] [1690] [1691] [1692] [1693] [1694] Overfull \hbox (48.78088pt too wide) in paragraph at lines 23023--23023 [] \T1/pcr/m/n/10 subset = rep_len(TRUE, nrow(as.matrix(x))), fix_sign = TRUE, ...)[] [1695] [1696] [1697] [1698] Overfull \hbox (0.78088pt too wide) in paragraph at lines 23307--23307 [] \T1/pcr/m/n/10 has.Pvalue = nc >= 4L && length(cn <- colnames(x )) &&[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 23308--23308 [] \T1/pcr/m/n/10 substr(cn[nc], 1L, 3L) %in% c("Pr(" , "p-v"),[] [1699] [1700] [1701] [1702] [1703] [1704] [1705] Underfull \hbox (badness 1337) in paragraph at lines 23712--23718 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1706] [1707] [1708] [1709] [1710] Overfull \hbox (15.18042pt too wide) in paragraph at lines 24024--24024 []\T1/pcr/m/n/9 with(d, qqplot(Female, Male, pch = 19, xlim = c(-31, 31), ylim = c(-31, 31),[] [1711] [1712] [1713] [1714] Underfull \hbox (badness 10000) in paragraph at lines 24356--24358 []\T1/ptm/m/n/10 Wicklin, R. (2017) Sam-ple quan-tiles: A com-par-i-son of 9 de f-i-ni-tions; Underfull \hbox (badness 10000) in paragraph at lines 24356--24358 \T1/ptm/m/n/10 SAS Blog. [][]$\T1/pcr/m/n/10 https : / / blogs . sas . com / co ntent / iml / 2017 / 05 / 24 / Underfull \hbox (badness 10000) in paragraph at lines 24359--24360 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . or g / wiki / Quantile # Estimating _ [1715] [1716] Overfull \hbox (48.78088pt too wide) in paragraph at lines 24470--24470 [] \T1/pcr/m/n/10 method = c("non.compact", "row.compact", "col.compact" , "compact"),[] [1717] Underfull \hbox (badness 1028) in paragraph at lines 24528--24531 []\T1/ptm/m/n/10 further ar-gu-ments to be passed to or from meth-ods; for []\T 1/pcr/m/n/10 write() []\T1/ptm/m/n/10 and [1718] [1719] Underfull \hbox (badness 10000) in paragraph at lines 24643--24646 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by [1720] Underfull \hbox (badness 7099) in paragraph at lines 24698--24700 []\T1/ptm/m/n/10 This, as [][][]\T1/pcr/m/n/10 reorder[][][]()[]\T1/ptm/m/n/10 , is a spe-cial case of sim-ply call-ing [][][]\T1/pcr/m/n/10 factor[][][](x, l evels = [1721] Underfull \hbox (badness 7099) in paragraph at lines 24762--24764 []\T1/ptm/m/n/10 This, as [][][]\T1/pcr/m/n/10 relevel[][][]()[]\T1/ptm/m/n/10 , is a spe-cial case of sim-ply call-ing [][][]\T1/pcr/m/n/10 factor[][][](x, l evels = Overfull \hbox (31.3804pt too wide) in paragraph at lines 24797--24797 []\T1/pcr/m/n/9 bymedianR <- with(InsectSprays, reorder(spray, count, median, decreasing=TRUE))[] [1722] [1723] Overfull \hbox (9.78043pt too wide) in paragraph at lines 24873--24873 []\T1/pcr/m/n/9 plot(reorder(dd, 10:1, agglo.FUN = mean), main = "reorder(dd, 10:1, mean)")[] [1724] [1725] Overfull \hbox (0.78088pt too wide) in paragraph at lines 24990--24990 []\T1/pcr/m/n/10 # varying = ___, # list / matrix / vector (use with care)[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 24991--24991 []\T1/pcr/m/n/10 # v.names = ___, # vector of variable names in long format[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 24992--24992 []\T1/pcr/m/n/10 # timevar, times, # name / values of constructed time variable[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 24993--24993 []\T1/pcr/m/n/10 # idvar, ids) # name / values of constructed id v ariable[] [1726] [1727] Underfull \hbox (badness 10000) in paragraph at lines 25150--25155 [][][]\T1/pcr/m/n/10 stack[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 aperm[] [][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 relist[][][] []\T1/ptm/m/n/10 for r e-shap-ing the re-sult of [][][]\T1/pcr/m/n/10 unlist[][][][]\T1/ptm/m/n/10 . [ ][][]\T1/pcr/m/n/10 xtabs[][][] []\T1/ptm/m/n/10 and Underfull \hbox (badness 2495) in paragraph at lines 25150--25155 [][][]\T1/pcr/m/n/10 as.data.frame.table[][][] []\T1/ptm/m/n/10 for cre-at-ing con-tin-gency ta-bles and con-vert-ing them back to Overfull \hbox (15.18042pt too wide) in paragraph at lines 25163--25163 []\T1/pcr/m/n/9 ## long to wide (direction = "wide") requires idvar and timeva r at a minimum[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 25164--25164 []\T1/pcr/m/n/9 reshape(Indometh, direction = "wide", idvar = "Subject", timev ar = "time")[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 25183--25183 []\T1/pcr/m/n/9 reshape(df, timevar = "visit", idvar = "id", direction = "wide ", v.names = "x")[] [1728] [1729] Overfull \hbox (60.78088pt too wide) in paragraph at lines 25288--25288 [] \T1/pcr/m/n/10 na.action = c("+Big_alternate", "-Big_alternate", "na. omit", "fail"),[] Underfull \hbox (badness 1033) in paragraph at lines 25331--25337 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1730] Underfull \hbox (badness 10000) in paragraph at lines 25352--25355 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/pcr/m/n/10 y = r unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/pcr/m/n/10 y[j] = [1731] Overfull \hbox (9.78043pt too wide) in paragraph at lines 25430--25430 []\T1/pcr/m/n/9 plot(myNHT, type = "b", ylim = c(48, 60), main = "Running Medi ans Example")[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 25456--25456 []\T1/pcr/m/n/9 ## An example with initial NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s - used to fail badly (notably for "Turlach"):[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 25468--25468 []\T1/pcr/m/n/9 matplot(y = cbind(x15, rT15), type = "b", ylim = c(1,9), pch=1 :5, xlab = NA,[] [1732] [1733] [1734] [1735] [1736] [1737] Underfull \vbox (badness 10000) has occurred while \output is active [1738] [1739] Underfull \hbox (badness 6268) in paragraph at lines 25927--25932 [][][]\T1/pcr/m/n/10 SSasympOrig[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 S Sbiexp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSfol[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSfpl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSgo mpertz[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSlogis[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/pcr/m/n/10 SSmicmen[][][][]\T1/ptm/m/n/10 , [1740] [1741] [1742] Underfull \hbox (badness 1867) in paragraph at lines 26137--26139 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 26153--26157 []\T1/ptm/m/n/10 where []\T1/pcr/m/n/10 NN <- [][]nobs[][][](object, use.fallba ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 PP Underfull \hbox (badness 10000) in paragraph at lines 26153--26157 \T1/pcr/m/n/10 <- sum(!is.na([][]coef[][][](object))) []\T1/ptm/m/n/10 -- where in older \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions this was [1743] Overfull \hbox (20.58041pt too wide) in paragraph at lines 26195--26195 []\T1/pcr/m/n/9 sigma(lm1) # ~= 7.165 = "Residual standard error" printed fr om summary(lm1)[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 26202--26202 []\T1/pcr/m/n/9 stopifnot(all.equal(sigma(fm.DN1), summary(fm.DN1)$sigma, tole rance=1e-15))[] [1744] [1745] [1746] Underfull \hbox (badness 2495) in paragraph at lines 26384--26393 []\T1/ptm/m/n/10 For an in-verse gaus-sian GLM the model as-sumed is $\OML/cmm/ m/it/10 IG\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 ^^V[]; ^^Uw[]\OT1/cmr/m/n/10 )$ \T1 /ptm/m/n/10 (see [][]$\T1/pcr/m/n/10 https : / / en . [1747] [1748] Underfull \hbox (badness 2197) in paragraph at lines 26530--26533 []\T1/pcr/m/n/10 psmirnov []\T1/ptm/m/n/10 gives the dis-tri-bu-tion func-tion, []\T1/pcr/m/n/10 qsmirnov []\T1/ptm/m/n/10 gives the quan-tile func-tion, and Overfull \hbox (24.78088pt too wide) in paragraph at lines 26550--26550 [] \T1/pcr/m/n/10 twiceit = FALSE, endrule = c("Tukey", "copy"), do.ends = FALSE)[] Underfull \hbox (badness 1412) in paragraph at lines 26557--26559 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing the kind of smoother re-qui red; de-faults to [1749] [1750] Overfull \hbox (25.98041pt too wide) in paragraph at lines 26642--26642 []\T1/pcr/m/n/9 matlines(cbind(smooth(x, "3R"), smooth(x, "S"), smooth(x, "3RS S"), smooth(x)))[] Overfull \hbox (84.78088pt too wide) in paragraph at lines 26667--26667 []\T1/pcr/m/n/10 smooth.spline(x, y = NULL, w = NULL, df, spar = NULL, lambda = NULL, cv = FALSE, Overfull \hbox (66.78088pt too wide) in paragraph at lines 26670--26670 [] \T1/pcr/m/n/10 control.spar = list(), tol = 1e-6 * IQR(x), kee p.stuff = FALSE)[] [1751] [1752] [1753] Overfull \hbox (6.78088pt too wide) in paragraph at lines 26895--26895 [] \T1/pcr/m/n/10 nx <- length(x) - sum(duplicated( round((x - mean(x)) / t ol) ))[] Underfull \hbox (badness 2547) in paragraph at lines 26899--26905 []\T1/ptm/m/n/10 The de-fault []\T1/pcr/m/n/10 all.knots = FALSE []\T1/ptm/m/n/ 10 and []\T1/pcr/m/n/10 nknots = .nknots.smspl[]\T1/ptm/m/n/10 , en-tails us-in g only [1754] Overfull \hbox (4.38043pt too wide) in paragraph at lines 26946--26946 []\T1/pcr/m/n/9 plot(dist ~ speed, data = cars, main = "data(cars) & smoothi ng splines")[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 26967--26967 []\T1/pcr/m/n/9 with(cars.spl$fit, min + range * knot[-c(1:3, nk+1 +1:3)]) # = = unique(cars$speed)[] [1755] [1756] [1757] Overfull \hbox (0.78088pt too wide) in paragraph at lines 27159--27159 []\T1/pcr/m/n/10 spec.ar(x, n.freq, order = NULL, plot = TRUE, na.action = na. fail, [1758] [1759] [1760] [1761] Underfull \hbox (badness 10000) in paragraph at lines 27424--27429 \T1/ptm/m/n/10 This makes the spec-tral den-sity a den-sity over the range []\T 1/pcr/m/n/10 (-frequency(x)/2, [1762] [1763] Overfull \hbox (36.78088pt too wide) in paragraph at lines 27538--27538 [] \T1/pcr/m/n/10 method = c("fmm", "periodic", "natural", "monoH.FC" , "hyman"),[] [1764] [1765] Overfull \hbox (69.18036pt too wide) in paragraph at lines 27720--27720 []\T1/pcr/m/n/9 set.seed(8); x <- sort(round(rnorm(30), 1)); y <- round(sin(pi * x) + rnorm(30)/10, 3)[] [1766] Overfull \hbox (52.98038pt too wide) in paragraph at lines 27726--27726 []\T1/pcr/m/n/9 plot(x, y, main = "spline(x,y, ties=list(\"ordered\", mean)) for when x has ties")[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 27735--27735 []\T1/pcr/m/n/9 curve(splinefun(x., y., method = "monoH.FC")(x), add = TRUE, c ol = 3, n = 1001)[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 27736--27736 []\T1/pcr/m/n/9 curve(splinefun(x., y., method = "hyman") (x), add = TRUE, c ol = 4, n = 1001)[] [1767] Underfull \hbox (badness 2922) in paragraph at lines 27805--27810 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion Overfull \hbox (9.78043pt too wide) in paragraph at lines 27842--27842 [] \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(0,5.2), xlim = c(-.3, 5),[] [1768] Overfull \hbox (42.18039pt too wide) in paragraph at lines 27845--27845 [] \T1/pcr/m/n/9 {f[phi](x) == phi[1] + (phi[2]-phi[1])*~e^ {-e^{phi[3]}*~x}}))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 27854--27854 [] \T1/pcr/m/n/9 c(0 , 1 ), 1, length = 0.08, angle = 25); text(0. 5, 1, quote(1))[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 27855--27855 [] \T1/pcr/m/n/9 y0 <- 1 + 4*exp(-3/4) ; t.5 <- log(2) / exp(-3/4) ; AR2 <- 3 # (Asym + R0)/2[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 27859--27859 [] \T1/pcr/m/n/9 axis(2, at = c(1,AR2,5), labels= expression(phi[2], frac(phi [1]+phi[2],2), phi[1]),[] [1769] Underfull \hbox (badness 3240) in paragraph at lines 27913--27916 [][][]\T1/pcr/m/n/10 nls[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 selfStart [][][][]\T1/ptm/m/n/10 ; []\T1/pcr/m/n/10 example(SSasympOff) []\T1/ptm/m/n/10 gives graph show-ing the []\T1/pcr/m/n/10 SSasympOff Overfull \hbox (36.7804pt too wide) in paragraph at lines 27934--27934 [] \T1/pcr/m/n/9 stopifnot( all.equal(yy, SSasympOff(xx, Asym = 5, lrc = log( 0.4), c0 = 3/4)) )[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 27937--27937 [] \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(-.5,6), xlim = c(-1, 8),[] [1770] Overfull \hbox (4.38043pt too wide) in paragraph at lines 28020--28020 [] \T1/pcr/m/n/9 stopifnot( all.equal(yy, SSasympOrig(xx, Asym = 5, lrc = log (log(2)))) )[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 28024--28024 [] \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(0,5), xlim = c(-1/4, 5),[] [1771] Overfull \hbox (58.38037pt too wide) in paragraph at lines 28034--28034 [] \T1/pcr/m/n/9 axis(2, at = 5*c(1/2,1), labels= expression(frac(phi[1],2), phi[1]), pos=0, las=1)[] Overfull \hbox (106.98032pt too wide) in paragraph at lines 28039--28039 [] \T1/pcr/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] Underfull \hbox (badness 2922) in paragraph at lines 28075--28081 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1772] Overfull \hbox (4.38043pt too wide) in paragraph at lines 28097--28097 []\T1/pcr/m/n/9 print(getInitial(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), dat a = Indo.1),[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 28113--28113 [] \T1/pcr/m/n/9 legend("topright", c("y1+y2", "y1 = 3.5 * exp(-4*x)", "y2 = 1.5 * exp(-x)"),[] Overfull \hbox (74.58035pt too wide) in paragraph at lines 28127--28127 []\T1/pcr/m/n/9 ## Fails by default (scaleOffset=0) on most platforms {also af ter increasing maxiter !}[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 28129--28129 [] \T1/pcr/m/n/9 nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d atN, trace=TRUE)[] Overfull \hbox (128.58029pt too wide) in paragraph at lines 28135--28135 [] \T1/pcr/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol= 1e-11, nDcentral=TRUE), trace=TRUE)[] [1773] [1774] Overfull \hbox (30.78088pt too wide) in paragraph at lines 28246--28246 []\T1/pcr/m/n/10 Dose * exp(lKe+lKa-lCl) * (exp(-exp(lKe)*input) - exp(-exp(lK a)*input)) [1775] Underfull \hbox (badness 2922) in paragraph at lines 28308--28313 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1776] Overfull \hbox (69.18036pt too wide) in paragraph at lines 28346--28346 [] \T1/pcr/m/n/9 mtext(quote(list(phi[1] == "A", phi[2] == "B", phi[3] == "xm id", phi[4] == "scal")))[] Underfull \hbox (badness 2922) in paragraph at lines 28395--28400 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1777] Overfull \hbox (4.38043pt too wide) in paragraph at lines 28426--28426 []\T1/pcr/m/n/9 lines(x, do.call(SSgompertz, c(list(x=x), coef(fm1))), col = " red", lwd=2)[] Underfull \hbox (badness 2922) in paragraph at lines 28460--28465 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1778] Overfull \hbox (25.98041pt too wide) in paragraph at lines 28485--28485 []\T1/pcr/m/n/9 ## Initial values are in fact the converged one here, "Number of iter...: 0" :[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 28489--28489 []\T1/pcr/m/n/9 fm2 <- update(fm1, control=nls.control(tol = 1e-9, warnOnly=TR UE), trace = TRUE)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 28509--28509 [] \T1/pcr/m/n/9 mtext(quote(list(phi[1] == "Asym", phi[2] == "xmid", phi[3] == "scal")))[] [1779] Overfull \hbox (20.58041pt too wide) in paragraph at lines 28519--28519 [] \T1/pcr/m/n/9 segments(c(2,2.6,2.6), c(0, 2.5,3.5), # NB. SSlogis(x = xmid = 2) = 2.5[] Underfull \hbox (badness 2922) in paragraph at lines 28554--28559 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion Overfull \hbox (4.38043pt too wide) in paragraph at lines 28576--28576 []\T1/pcr/m/n/9 print(getInitial(rate ~ SSmicmen(conc, Vm, K), data = PurTrt), digits = 3)[] [1780] Overfull \hbox (15.18042pt too wide) in paragraph at lines 28594--28594 [] \T1/pcr/m/n/9 ann = FALSE, axes = FALSE, main = "Parameters in the SS micmen model")[] [1781] Underfull \hbox (badness 6493) in paragraph at lines 28646--28651 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 x[]\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion Overfull \hbox (4.38043pt too wide) in paragraph at lines 28674--28674 []\T1/pcr/m/n/9 getInitial(weight ~ SSweibull(Time, Asym, Drop, lrc, pwr), dat a = Chick.6)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 28676--28676 []\T1/pcr/m/n/9 fm1 <- nls(weight ~ SSweibull(Time, Asym, Drop, lrc, pwr), dat a = Chick.6)[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 28680--28680 []\T1/pcr/m/n/9 plot(weight ~ Time, Chick.6, xlim = c(0, 21), main = "SSweibul l() fit to Chick.6")[] Overfull \hbox (69.18036pt too wide) in paragraph at lines 28683--28683 []\T1/pcr/m/n/9 As <- coef(fm1)[["Asym"]]; abline(v = 0, h = c(As, As - coef(f m1)[["Drop"]]), lty = 3)[] [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] Underfull \hbox (badness 3396) in paragraph at lines 29564--29566 []\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.glm"[]\T1/ptm/m/ n/10 , usu-ally, a re-sult of a call to [1796] [1797] [1798] Underfull \hbox (badness 2237) in paragraph at lines 29743--29745 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /pcr/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1799] [1800] Underfull \hbox (badness 2591) in paragraph at lines 29907--29909 []\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.nls"[]\T1/ptm/m/ n/10 , usu-ally the re-sult of a call to [1801] Underfull \hbox (badness 2237) in paragraph at lines 29953--29956 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /pcr/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1802] Overfull \hbox (48.78088pt too wide) in paragraph at lines 30026--30026 []\T1/pcr/m/n/10 supsmu(x, y, wt =, span = "cv", periodic = FALSE, bass = 0, t race = FALSE) [1803] [1804] Underfull \hbox (badness 3407) in paragraph at lines 30135--30139 []\T1/ptm/m/n/10 character vec-tor, one shorter than (the \T1/ptm/m/it/10 aug-m ented\T1/ptm/m/n/10 , see []\T1/pcr/m/n/10 corr []\T1/ptm/m/n/10 be-low) [1805] Overfull \hbox (47.58038pt too wide) in paragraph at lines 30205--30205 []\T1/pcr/m/n/9 symnum(ii, cutpoints = 2*(0:4), symbols = c(".", "-", "+", "$ "), show.max = TRUE)[] [1806] Underfull \hbox (badness 1337) in paragraph at lines 30268--30272 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1807] [1808] [1809] [1810] Overfull \hbox (9.78043pt too wide) in paragraph at lines 30547--30547 []\T1/pcr/m/n/9 persp(tt, ncp, ptn, zlim = 0:1, r = 2, phi = 20, theta = 200, main = t.tit,[] [1811] Overfull \hbox (0.78088pt too wide) in paragraph at lines 30590--30590 [] \T1/pcr/m/n/10 use.factor.levels = TRUE, smooth = NULL, ylim = "com mon",[] Underfull \hbox (badness 1616) in paragraph at lines 30616--30619 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1812] Overfull \hbox (20.58041pt too wide) in paragraph at lines 30695--30695 []\T1/pcr/m/n/9 termplot(model, partial.resid = TRUE, smooth = panel.smooth, s pan.smth = 1/4)[] [1813] Underfull \hbox (badness 10000) in paragraph at lines 30733--30738 []\T1/ptm/m/n/10 There are meth-ods for classes []\T1/pcr/m/n/10 "aovlist"[]\T1 /ptm/m/n/10 , []\T1/pcr/m/n/10 "terms"[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 " formula" []\T1/ptm/m/n/10 (see [1814] Overfull \hbox (0.78088pt too wide) in paragraph at lines 30773--30773 []\T1/pcr/m/n/10 terms(x, specials = NULL, abb = NULL, data = NULL, neg.out = TRUE,[] [1815] [1816] [1817] Overfull \hbox (12.78088pt too wide) in paragraph at lines 31007--31007 []\T1/pcr/m/n/10 toeplitz2(x, nrow = length(x) +1 - ncol, ncol = length(x) +1 - nrow)[] Underfull \hbox (badness 2913) in paragraph at lines 31013--31017 []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 toeplitz(x, *)[]\T1/ptm/m/n/10 : the firs t col-umn of the Toeplitz ma-trix; for [1818] Overfull \hbox (36.7804pt too wide) in paragraph at lines 31050--31050 []\T1/pcr/m/n/9 # Matrix of character (could also have logical, raw, complex . .) {also warning}:[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 31063--31063 [] \T1/pcr/m/n/9 colnames(W) <- paste0(",", if(n <= 9) 1:n else c(1:9, lette rs[seq_len(n-9)]))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 31074--31074 []\T1/pcr/m/n/9 y.hat <- W. %*% y # y.hat := smoothed(y) ("mass preserving" -> longer than y)[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 31076--31076 []\T1/pcr/m/n/9 plot(x,y, type="b", xlim=c(1,m)); curve(f(x), 1,n, col="gray", lty=2, add=TRUE)[] [1819] Overfull \hbox (30.78088pt too wide) in paragraph at lines 31108--31108 [] \T1/pcr/m/n/10 class = if(nseries > 1) c("mts", "ts", "matrix", "array") else "ts",[] [1820] Underfull \hbox (badness 1655) in paragraph at lines 31186--31189 []\T1/pcr/m/n/10 is.mts(x) []\T1/ptm/m/n/10 tests if an ob-ject []\T1/pcr/m/n/1 0 x []\T1/ptm/m/n/10 is a mul-ti-vari-ate time se-ries, i.e., ful-fills []\T1/p cr/m/n/10 is.ts(x)[]\T1/ptm/m/n/10 , Overfull \hbox (20.58041pt too wide) in paragraph at lines 31224--31224 []\T1/pcr/m/n/9 utils:: methods(class = "ts") # all functions with methods ava ilable for "ts"[] [1821] [1822] [1823] [1824] [1825] Overfull \hbox (12.78088pt too wide) in paragraph at lines 31558--31558 []\T1/pcr/m/n/10 ptukey(q, nmeans, df, nranges = 1, lower.tail = TRUE, log.p = FALSE) [1826] Overfull \hbox (12.78088pt too wide) in paragraph at lines 31559--31559 []\T1/pcr/m/n/10 qtukey(p, nmeans, df, nranges = 1, lower.tail = TRUE, log.p = FALSE)[] [1827] [1828] [1829] [1830] Overfull \hbox (30.78088pt too wide) in paragraph at lines 31859--31859 [] \T1/pcr/m/n/10 extendInt = c("no", "yes", "downX", "upX"), check.con v = FALSE,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 31860--31860 [] \T1/pcr/m/n/10 tol = .Machine$double.eps^0.25, maxiter = 1000, trace = 0)[] [1831] [1832] Overfull \hbox (31.3804pt too wide) in paragraph at lines 31989--31989 []\T1/pcr/m/n/9 ##--- uniroot() with new interval extension + checking feature s: --------------[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 31998--31998 []\T1/pcr/m/n/9 ## where as \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 extendInt="yes"\TS1 /pcr/m/n/9 ' \T1/pcr/m/n/9 simply first enlarges the search interval:[] [1833] [1834] [1835] [1836] Underfull \hbox (badness 1337) in paragraph at lines 32215--32219 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1837] [1838] [1839] [1840] [1841] [1842] [1843] [1844] Underfull \hbox (badness 1337) in paragraph at lines 32743--32747 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1845] [1846] [1847] Overfull \hbox (117.7803pt too wide) in paragraph at lines 32951--32951 []\T1/pcr/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] Overfull \hbox (74.58035pt too wide) in paragraph at lines 32953--32953 []\T1/pcr/m/n/9 wilcox.test((4:2)/10, (3:1)/10, paired=TRUE, digits.rank = 9) # same ties as (4:2, 3:1)[] [1848] [1849] Overfull \hbox (138.78088pt too wide) in paragraph at lines 33112--33112 [] \T1/pcr/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps = getOption("ts.eps"), ...)[] [1850] Overfull \hbox (0.78088pt too wide) in paragraph at lines 33197--33197 []\T1/pcr/m/n/10 xtabs(formula = ~., data = parent.frame(), subset, sparse = F ALSE, Overfull \hbox (0.78088pt too wide) in paragraph at lines 33199--33199 [] \T1/pcr/m/n/10 exclude = if(!addNA) c(NA, NaN), drop.unused.levels = F ALSE)[] [1851] [1852] [1853] [1854]) (./stats4-pkg.tex Chapter 11. [1855] [1856] [1857] Overfull \hbox (15.18042pt too wide) in paragraph at lines 224--224 [] \T1/pcr/m/n/9 -sum(stats::dpois(y, lambda = exp(lymax)/(1+x/exp(lxhalf)) , log = TRUE))[] Underfull \vbox (badness 10000) has occurred while \output is active [1858] Overfull \hbox (9.78043pt too wide) in paragraph at lines 278--278 []\T1/pcr/m/n/9 ## Boundary case: This works, but fails if limits are set clos er to 0 and 1[] [1859] [1860] [1861] [1862]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1863] [1864] [1865]) (./tcltk-pkg.tex [1866] Chapter 12. [1867] [1868] [1869] [1870] [1871] Overfull \hbox (36.7804pt too wide) in paragraph at lines 372--372 []\T1/pcr/m/n/9 ls(envir = .TkRoot$env, all.names = TRUE) # .Tcl.args put a ca llback ref in here[] [1872] [1873] Underfull \vbox (badness 10000) has occurred while \output is active [1874] Underfull \hbox (badness 1292) in paragraph at lines 683--690 []\T1/pcr/m/n/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-i ng any Tk or Tcl com-mand by sim-ply run-ning Underfull \vbox (badness 1603) has occurred while \output is active [1875] [1876] [1877] [1878] [1879] Underfull \vbox (badness 10000) has occurred while \output is active [1880] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1096--1096 []\T1/pcr/m/n/9 eval.txt <- function() eval(str2lang(tclvalue(tkget(txt.w, "0. 0", "end"))))[] [1881] [1882] [1883] [1884] [1885] Underfull \hbox (badness 1189) in paragraph at lines 1424--1427 [][][]\T1/pcr/m/n/10 select.list[][][] []\T1/ptm/m/n/10 (a text ver-sion ex-cep t on Win-dows and the ma-cOS GUI), [][][]\T1/pcr/m/n/10 menu[][][] []\T1/ptm/m/ n/10 (whose [1886]) (./tools-pkg.tex Chapter 13. [1887] Overfull \hbox (9.78043pt too wide) in paragraph at lines 69--69 []\T1/pcr/m/n/9 ## is used for simple print methods in R, and as prototype for new methods.[] [1888] Underfull \hbox (badness 1253) in paragraph at lines 167--170 []\T1/pcr/m/n/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing will be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1889] Overfull \hbox (4.38043pt too wide) in paragraph at lines 218--218 []\T1/pcr/m/n/9 assertCondition(ff(), "error", "warning") # ok (quietly, catch ing warning)[] [1890] Underfull \hbox (badness 5147) in paragraph at lines 326--339 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 Underfull \hbox (badness 4792) in paragraph at lines 326--339 \T1/ptm/m/n/10 types of bib-li-o-graphic en-try sup-ported by [][][]\T1/pcr/m/n /10 bibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou- Underfull \hbox (badness 2237) in paragraph at lines 326--339 \T1/ptm/m/n/10 tines de-scribed be-low. The for-mer must be named []\T1/pcr/m/n /10 formatArticle[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 formatBook[]\T1/ptm/m/n/10 , [1891] [1892] Overfull \hbox (42.78088pt too wide) in paragraph at lines 411--411 []\T1/pcr/m/n/10 buildVignette(file, dir = ".", weave = TRUE, latex = TRUE, ta ngle = TRUE, Underfull \hbox (badness 2460) in paragraph at lines 430--432 []\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gin e to use. Over-rides any [1893] Underfull \hbox (badness 1142) in paragraph at lines 502--506 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1894] [1895] [1896] [1897] [1898] [1899] [1900] Underfull \hbox (badness 1024) in paragraph at lines 913--920 \T1/ptm/m/n/10 by \T1/pcr/m/n/10 \donttest\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \dont diff \T1/ptm/m/n/10 or \T1/pcr/m/n/10 \dontshow\T1/ptm/m/n/10 , and \T1/pcr/m/n /10 \title \T1/ptm/m/n/10 re-placed by \T1/pcr/m/n/10 \section \T1/ptm/m/n/10 o r [1901] Overfull \hbox (0.78088pt too wide) in paragraph at lines 985--985 []\T1/pcr/m/n/10 resaveRdaFiles(paths, compress = c("auto", "gzip", "bzip2", " xz"),[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 1040--1040 []\T1/pcr/m/n/9 bad <- is.na(res$ASCII) | res$ASCII | (res$size > 1e4 & res$co mpress == "none")[] [1902] [1903] [1904] Overfull \hbox (12.78088pt too wide) in paragraph at lines 1210--1210 [] \T1/pcr/m/n/10 outputs = FALSE, sources = FALS E, ...)[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 1211--1211 []\T1/pcr/m/n/10 check_packages_in_dir_details(dir, logs = NULL, drop_ok = TRU E, ...)[] [1905] Underfull \hbox (badness 1014) in paragraph at lines 1258--1260 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1264--1266 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [1906] Underfull \hbox (badness 10000) in paragraph at lines 1301--1304 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us- Underfull \hbox (badness 10000) in paragraph at lines 1301--1304 \T1/ptm/m/n/10 ing []\T1/pcr/m/n/10 summarize_check_packages_in_dir_results []\ T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 1309--1312 []\T1/pcr/m/n/10 check_packages_in_dir []\T1/ptm/m/n/10 re-turns an ob-ject in- her-it-ing from class [1907] [1908] Underfull \hbox (badness 10000) in paragraph at lines 1456--1459 []\T1/pcr/m/n/10 codocClasses []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 codocData [ ]\T1/ptm/m/n/10 re-turn ob-jects of class []\T1/pcr/m/n/10 "codocClasses" []\T1 /ptm/m/n/10 and [1909] [1910] Underfull \hbox (badness 4647) in paragraph at lines 1639--1644 []\T1/pcr/m/n/10 CRAN_package_db() []\T1/ptm/m/n/10 re-turns a data frame with char-ac-ter columns con-tain-ing most Underfull \hbox (badness 7869) in paragraph at lines 1639--1644 \T1/ptm/m/n/10 `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' meta-data for the cu r-rent pack-ages in the CRAN pack-age repos-i- Underfull \hbox (badness 1681) in paragraph at lines 1639--1644 \T1/ptm/m/n/10 tory, in-clud-ing in par-tic-u-lar the De-scrip-tion and Main-ta iner in-for-ma-tion not pro-vided by [1911] Underfull \hbox (badness 10000) in paragraph at lines 1716--1726 []\T1/ptm/m/n/10 Functions []\T1/pcr/m/n/10 CRAN_current_db()[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 CRAN_aliases_db()[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 CRAN_rdx refs_db()[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1716--1726 []\T1/pcr/m/n/10 CRAN_authors_db() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 CRAN_a rchive_db() []\T1/ptm/m/n/10 (also used by []\T1/pcr/m/n/10 R CMD check[]\T1/pt m/m/n/10 ) Underfull \hbox (badness 4120) in paragraph at lines 1716--1726 \T1/ptm/m/n/10 use []\T1/pcr/m/n/10 R_CRAN_SRC []\T1/ptm/m/n/10 rather than []\ T1/pcr/m/n/10 R_CRAN_WEB[]\T1/ptm/m/n/10 . The mir-ror to be used is re-ported by [1912] [1913] Overfull \hbox (24.78088pt too wide) in paragraph at lines 1840--1840 [] \T1/pcr/m/n/10 utils::installed.packages(lib.loc, fields = "En hances"))[] Underfull \hbox (badness 7981) in paragraph at lines 1847--1855 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of Underfull \hbox (badness 10000) in paragraph at lines 1847--1855 []\T1/pcr/m/n/10 c("Depends", "Imports", "LinkingTo", "Suggests", Underfull \hbox (badness 1558) in paragraph at lines 1847--1855 \T1/pcr/m/n/10 "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string []\T1/pcr/m/n/1 0 "all" []\T1/ptm/m/n/10 is short-hand for that vec-tor, [1914] [1915] [1916] [1917] [1918]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.2102 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ig nored \relax l.2103 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1919] [1920] [1921] [1922] [1923] Underfull \hbox (badness 1142) in paragraph at lines 2439--2445 []\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 loadPkgRdMacros []\T1/ptm/m/n/10 func-tio n first looks for an []\T1/pcr/m/n/10 "RdMacros" []\T1/ptm/m/n/10 en-try in the pack-age [1924] Underfull \hbox (badness 2359) in paragraph at lines 2503--2510 []\T1/ptm/m/n/10 Package main-tain-ers can use these func-tions to em-ploy user and site spe-cific com-pi-la- Underfull \hbox (badness 1102) in paragraph at lines 2503--2510 \T1/ptm/m/n/10 tion set-tings also for com-pi-la-tions not us-ing \T1/phv/m/n/1 0 R\T1/ptm/m/n/10 's mech-a-nisms (in par-tic-u-lar, cus-tom com- Underfull \hbox (badness 4168) in paragraph at lines 2503--2510 \T1/ptm/m/n/10 pi-la-tions in sub-di-rec-to-ries of `\T1/pcr/m/n/10 src\T1/ptm/ m/n/10 '), e.g., by adding con-fig-ure code call-ing \T1/phv/m/n/10 R \T1/ptm/m /n/10 with [1925] Underfull \hbox (badness 1342) in paragraph at lines 2555--2561 \T1/ptm/m/n/10 This al-lows e.g. the trans-la-tions shipped in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.x.y to be up-dated to those cur-rently in Underfull \hbox (badness 10000) in paragraph at lines 2580--2587 []\T1/pcr/m/n/10 matchConcordance []\T1/ptm/m/n/10 con-verts from out-put lo-ca -tions to source lo-ca-tions. The [1926] Underfull \hbox (badness 1259) in paragraph at lines 2644--2647 []\T1/ptm/m/n/10 The de-fault method of []\T1/pcr/m/n/10 as.Rconcordance []\T1/ ptm/m/n/10 searches for strings match-ing the pat-tern of Underfull \hbox (badness 1648) in paragraph at lines 2648--2654 []\T1/pcr/m/n/10 followConcordance []\T1/ptm/m/n/10 is used when a file is tran s-formed more than once. The first Underfull \hbox (badness 1708) in paragraph at lines 2648--2654 \T1/ptm/m/n/10 trans-for-ma-tion records a con-cor-dance in the file which is r ead as []\T1/pcr/m/n/10 prevConcordance[]\T1/ptm/m/n/10 . [1927] [1928] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2776--2776 []\T1/pcr/m/n/10 package_dependencies(packages = NULL, db = NULL, which = "str ong", Underfull \hbox (badness 7981) in paragraph at lines 2791--2799 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of Underfull \hbox (badness 10000) in paragraph at lines 2791--2799 []\T1/pcr/m/n/10 c("Depends", "Imports", "LinkingTo", "Suggests", Underfull \hbox (badness 1558) in paragraph at lines 2791--2799 \T1/pcr/m/n/10 "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string []\T1/pcr/m/n/1 0 "all" []\T1/ptm/m/n/10 is short-hand for that vec-tor, Overfull \hbox (15.18042pt too wide) in paragraph at lines 2827--2827 []\T1/pcr/m/n/9 myPkgs <- c("MASS", "Matrix", "KernSmooth", "class", "cluster" , "codetools")[] [1929] Overfull \hbox (18.78088pt too wide) in paragraph at lines 2860--2860 [] \T1/pcr/m/n/10 align = TRUE, character_only = TRUE, include_declarations = TRUE)[] [1930] [1931] [1932] [1933] Overfull \hbox (0.78088pt too wide) in paragraph at lines 3158--3158 [] \T1/pcr/m/n/10 macros = file.path(R.home("share"), "Rd", "macros", "system. Rd"),[] [1934] Underfull \hbox (badness 2486) in paragraph at lines 3203--3211 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sion 3.2.0, User-d efined macros may be given in a sep-a-rate file us-ing [1935] Overfull \hbox (12.78088pt too wide) in paragraph at lines 3259--3259 [] \T1/pcr/m/n/10 stylesheet = file.path(R.home("doc"), "html", "R-nav .css"),[] Overfull \hbox (36.78088pt too wide) in paragraph at lines 3260--3260 [] \T1/pcr/m/n/10 hooks = list(pkg_href = function(pkg) sprintf("%s.ht ml", pkg)),[] Overfull \hbox (84.78088pt too wide) in paragraph at lines 3267--3267 [] \T1/pcr/m/n/10 mathjax_config = file.path(R.home("doc"), "html", "m athjax-config.js"),[] [1936] [1937] [1938] Overfull \hbox (0.78088pt too wide) in paragraph at lines 3527--3527 []\T1/pcr/m/n/10 checkDocFiles (package, dir, lib.loc = NULL, chkInternal = NULL) [1939] Overfull \hbox (0.78088pt too wide) in paragraph at lines 3531--3531 []\T1/pcr/m/n/10 checkRdContents (package, dir, lib.loc = NULL, chkInternal = NULL)[] [1940] [1941] [1942] Overfull \hbox (48.78088pt too wide) in paragraph at lines 3762--3762 [] \T1/pcr/m/n/10 fragment = FALSE, ..., writeEncoding = outputEncodin g != "UTF-8",[] [1943] Underfull \hbox (badness 1072) in paragraph at lines 3815--3817 []\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec- tor of links, as re-turned by [1944] [1945] [1946] [1947] [1948] Overfull \hbox (72.78088pt too wide) in paragraph at lines 4153--4153 [] \T1/pcr/m/n/10 macros = file.path(R.home("share"), "Rd", "macro s", "system.Rd"))[] Underfull \hbox (badness 5417) in paragraph at lines 4191--4201 []\T1/ptm/m/n/10 By de-fault, the tags \T1/pcr/m/n/10 \S3method\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \S4method\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \command\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \docType\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \email\T1/ptm/m/n/10 , [1949] [1950] [1951] [1952] [1953] Underfull \hbox (badness 4108) in paragraph at lines 4462--4469 []\T1/ptm/m/n/10 This func-tion starts the in-ter-nal HTTP server, which runs o n the loop-back in-ter-face [1954] Overfull \hbox (0.78088pt too wide) in paragraph at lines 4563--4563 [] \T1/pcr/m/n/10 types = c("examples", "tests", "vignett es"),[] [1955] Overfull \hbox (48.78088pt too wide) in paragraph at lines 4566--4566 []\T1/pcr/m/n/10 testInstalledBasic(scope = c("basic", "devel", "both", "inter net", "all"),[] Underfull \hbox (badness 10000) in paragraph at lines 4591--4593 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1956] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4650--4650 []\T1/pcr/m/n/9 (prio <- sapply(as.vector(pNms), packageDescription, fields = "Priority"))[] [1957] Underfull \hbox (badness 4954) in paragraph at lines 4715--4720 []\T1/ptm/m/n/10 On Unix-alikes, the de-fault op-tion for []\T1/pcr/m/n/10 texi 2dvi []\T1/ptm/m/n/10 is set from en-vi-ron-ment vari-able [1958] [1959] [1960] Overfull \hbox (20.58041pt too wide) in paragraph at lines 4917--4917 []\T1/pcr/m/n/9 toTitleCase("ensemble tool for predictions from species distri bution models")[] Overfull \hbox (128.58029pt too wide) in paragraph at lines 4921--4921 []\T1/pcr/m/n/9 toTitleCase("a small fox is jumping") # "a Small Fox is .." (the \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 a\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 may cha nge)% i.e. BUG[] Overfull \hbox (69.18036pt too wide) in paragraph at lines 4925--4925 []\T1/pcr/m/n/9 toTitleCase("asking -- \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 is a smal l fox jumping?\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ") # ".. -- Is a Small ..." (fi ne)[] [1961] [1962] Overfull \hbox (0.78088pt too wide) in paragraph at lines 5008--5008 [] \T1/pcr/m/n/10 "mac.binary", "win.binary"), verbose.level = as.integer(dry run),[] [1963] [1964] Underfull \hbox (badness 10000) in paragraph at lines 5192--5195 []\T1/ptm/m/n/10 optional char-ac-ter strings for the `[]\T1/pcr/m/n/10 Copyrig ht[]\T1/ptm/m/n/10 ' and [1965] Underfull \hbox (badness 6859) in paragraph at lines 5208--5213 []\T1/ptm/m/n/10 All ex-ist-ing files in di-rec-tory []\T1/pcr/m/n/10 po []\T1/ ptm/m/n/10 with names `\T1/pcr/m/n/10 R-\T1/ptm/m/sl/10 lang\T1/pcr/m/n/10 .po\ T1/ptm/m/n/10 ' are up-dated from Underfull \hbox (badness 1184) in paragraph at lines 5216--5222 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/pcr/m/n/10 po /\T1/ptm/m/sl/10 pkgname\T1/pcr/m/n/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. T he Underfull \hbox (badness 2941) in paragraph at lines 5216--5222 \T1/ptm/m/n/10 `\T1/pcr/m/n/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in t he pack-age are ex-am-ined to cre-ate a file [1966] Overfull \hbox (9.78043pt too wide) in paragraph at lines 5325--5325 []\T1/pcr/m/n/9 parse_URI_reference(c("foo://example.com:8042/over/there?name= ferret#nose",[] [1967] [1968] [1969] Underfull \hbox (badness 10000) in paragraph at lines 5521--5523 []\T1/ptm/m/n/10 the [][][]\T1/pcr/m/n/10 vignetteEngine[][][][]\T1/ptm/m/n/10 , such as []\T1/pcr/m/n/10 "utils::Sweave" []\T1/ptm/m/n/10 or [1970] Overfull \hbox (0.78088pt too wide) in paragraph at lines 5550--5550 [] \T1/pcr/m/n/10 verbose = FALSE, unpacked = FALSE, subdirs = F ALSE,[] Overfull \hbox (36.78088pt too wide) in paragraph at lines 5551--5551 [] \T1/pcr/m/n/10 latestOnly = TRUE, addFiles = FALSE, rds_compr ess = "xz",[] Underfull \hbox (badness 3240) in paragraph at lines 5564--5567 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T 1/pcr/m/n/10 PACKAGES\T1/ptm/m/n/10 ', Underfull \hbox (badness 1742) in paragraph at lines 5568--5578 []\T1/pcr/m/n/10 "Package"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Version"[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 "Priority"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Depe nds"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Imports"[]\T1/ptm/m/n/10 , [1971] Underfull \hbox (badness 1127) in paragraph at lines 5606--5612 []\T1/pcr/m/n/10 write_PACKAGES []\T1/ptm/m/n/10 scans the named di-rec-tory fo r R pack-ages, ex-tracts in-for-ma-tion from Underfull \hbox (badness 1635) in paragraph at lines 5606--5612 \T1/ptm/m/n/10 each pack-age's `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' file , and writes this in-for-ma-tion into the `\T1/pcr/m/n/10 PACKAGES\T1/ptm/m/n/1 0 ', Underfull \hbox (badness 1571) in paragraph at lines 5634--5638 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by Underfull \hbox (badness 2772) in paragraph at lines 5660--5665 \T1/ptm/m/n/10 and `\T1/pcr/m/n/10 PACKAGES.gz\T1/ptm/m/n/10 ' files. See [][][ ]\T1/pcr/m/n/10 update_PACKAGES[][][] []\T1/ptm/m/n/10 for ef-fi-ciently up-dat -ing ex-ist-ing [1972] [1973] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5798--5798 [] \T1/pcr/m/n/9 " stop(errorCondition(gettext(\TS1/pcr/m/n/9 '\T1/pcr/m/n /9 needs Deep Thought\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), class=\TS1/pcr/m/n/9 '\T1 /pcr/m/n/9 myError\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ))",[] [1974] [1975]) (./utils-pkg.tex [1976] Chapter 14. Underfull \hbox (badness 1072) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/pcr/m/n/10 insertions[]\T1/ptm/m/n/10 ', [1977] [1978] [1979] [1980] Overfull \hbox (4.38043pt too wide) in paragraph at lines 260--260 []\T1/pcr/m/n/9 find("cor", numeric = TRUE) # numbers with these names[] [1981] [1982] Underfull \hbox (badness 10000) in paragraph at lines 378--383 \T1/ptm/m/n/10 are []\T1/pcr/m/n/10 c("vertical", "horizontal", "cascade", "min imize", Underfull \hbox (badness 10000) in paragraph at lines 384--386 []\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 list[][][] []\T1/ptm/m/n/10 of win-dow han-dles, by de-fault pro-duced by [1983] Overfull \hbox (9.78043pt too wide) in paragraph at lines 450--450 []\T1/pcr/m/n/9 # This default is useful only in SDI mode: it will tile any F irefox window[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 452--452 []\T1/pcr/m/n/9 .arrangeWindowsDefaults <- list(c("R", "all"), pattern = c("", "Firefox"))[] Overfull \hbox (60.78088pt too wide) in paragraph at lines 469--469 [] \T1/pcr/m/n/10 prompts = getOption("askYesNo", gettext(c("Yes", "No ", "Cancel"))),[] [1984] [1985] [1986] Overfull \hbox (6.78088pt too wide) in paragraph at lines 691--691 []\T1/pcr/m/n/10 aspell_package_R_files(dir, ignore = character(), control = l ist(),[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 692--692 [] \T1/pcr/m/n/10 program = NULL, dictionaries = charact er())[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 693--693 []\T1/pcr/m/n/10 aspell_package_C_files(dir, ignore = character(), control = l ist(),[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 694--694 [] \T1/pcr/m/n/10 program = NULL, dictionaries = charact er())[] [1987] Underfull \hbox (badness 10000) in paragraph at lines 728--734 []\T1/ptm/m/n/10 Functions []\T1/pcr/m/n/10 aspell_package_Rd_files[]\T1/ptm/m/ n/10 , []\T1/pcr/m/n/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 4416) in paragraph at lines 728--734 []\T1/pcr/m/n/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 a spell_package_C_files []\T1/ptm/m/n/10 per-form spell check- [1988] Overfull \hbox (6.78088pt too wide) in paragraph at lines 797--797 [] \T1/pcr/m/n/10 fields = getOption("available_packages_fie lds"),[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 802--802 [] \T1/pcr/m/n/10 str2logical(Sys.getenv("R_PACKAGES_CAC HE_USER_DIR",[] Underfull \hbox (badness 10000) in paragraph at lines 842--845 [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 in-di-cat-ing if caching sh ould hap-pen in \T1/ptm/b/n/10 tools\T1/ptm/m/n/10 ' [1989] Underfull \hbox (badness 1552) in paragraph at lines 936--942 []\T1/ptm/m/n/10 A char-ac-ter ma-trix with one row per pack-age, row names the pack-age names and col- [1990] Overfull \hbox (31.3804pt too wide) in paragraph at lines 963--963 []\T1/pcr/m/n/9 db <- available.packages(repos = findCRANmirror("web"), filter s = "duplicates")[] [1991] Overfull \hbox (6.78088pt too wide) in paragraph at lines 1065--1065 []\T1/pcr/m/n/10 bibentry(bibtype, textVersion = NULL, header = NULL, footer = NULL, [1992] [1993] Underfull \hbox (badness 7649) in paragraph at lines 1139--1145 [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 in-di-cat-ing if Bib-TeX co de should be given ad-di-tion-ally; Underfull \hbox (badness 5533) in paragraph at lines 1139--1145 \T1/ptm/m/n/10 cur-rently ap-plies only to []\T1/pcr/m/n/10 style = "citation"[ ]\T1/ptm/m/n/10 . The de-fault for Underfull \hbox (badness 4739) in paragraph at lines 1139--1145 \T1/ptm/m/n/10 the []\T1/pcr/m/n/10 print() []\T1/ptm/m/n/10 method de-pends on the num-ber of (bib) en-tries and Underfull \hbox (badness 1215) in paragraph at lines 1139--1145 \T1/ptm/m/n/10 For ex-am-ple, to see no Bib-TeX at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1148--1150 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1994] Underfull \hbox (badness 10000) in paragraph at lines 1266--1269 []\T1/ptm/m/n/10 The DOI ([][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Digital _ Object _ [1995] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1349--1349 [] \T1/pcr/m/n/9 author = as.person("Anthony C. Davison [aut], David V. Hi nkley [aut]"),[] [1996] [1997] [1998] [1999] [2000] [2001] Underfull \hbox (badness 1859) in paragraph at lines 1758--1767 []\T1/ptm/m/n/10 For ex-am-ple, sup-pose that on a data set which you know to b e quite large the com- Underfull \hbox (badness 2042) in paragraph at lines 1758--1767 \T1/ptm/m/n/10 mand []\T1/pcr/m/n/10 data.frame(x, y, z, monday, tuesday) []\T1 /ptm/m/n/10 never re-turns. Do not re-port that [2002] [2003] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1863--1863 [] \T1/pcr/m/n/9 data = infert, family = b inomial())))[] [2004] Overfull \hbox (66.78088pt too wide) in paragraph at lines 1898--1898 []\T1/pcr/m/n/10 changedFiles(before, after, path = before$path, timestamp = b efore$timestamp,[] [2005] Overfull \hbox (20.58041pt too wide) in paragraph at lines 2044--2044 []\T1/pcr/m/n/9 snapshot <- fileSnapshot(dir, timestamp = tempfile("timestamp" ), md5sum=TRUE)[] [2006] Underfull \hbox (badness 2277) in paragraph at lines 2113--2118 []\T1/pcr/m/n/10 charClass []\T1/ptm/m/n/10 was added in \T1/phv/m/n/10 R \T1/p tm/m/n/10 4.1.0. A less di-rect way to ex-am-ine char-ac-ter classes [2007] Overfull \hbox (36.7804pt too wide) in paragraph at lines 2145--2145 []\T1/pcr/m/n/9 cl <- c("alnum", "alpha", "blank", "digit", "graph", "punct", "upper", "xdigit")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 2147--2147 []\T1/pcr/m/n/9 X <- as.data.frame(X); row.names(X) <- sQuote(intToUtf8(x, mul tiple = TRUE))[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2155--2155 []\T1/pcr/m/n/9 ## How many printable characters are there? (Around 280,000 in Unicode 13.)[] [2008] [2009] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2303--2303 []\T1/pcr/m/n/10 chooseBioCmirror(graphics = getOption("menu.graphics"), ind = NULL, [2010] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2355--2355 []\T1/pcr/m/n/10 chooseCRANmirror(graphics = getOption("menu.graphics"), ind = NULL, [2011] [2012] Underfull \hbox (badness 1117) in paragraph at lines 2481--2488 []\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/pcr/m/n/10 citation() []\T1/ ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print Underfull \hbox (badness 1400) in paragraph at lines 2481--2488 \T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I f a pack-age has more [2013] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2564--2564 []\T1/pcr/m/n/10 citeNatbib(keys, bib, textual = FALSE, before = NULL, after = NULL,[] [2014] [2015] Overfull \hbox (15.18042pt too wide) in paragraph at lines 2684--2684 [] \T1/pcr/m/n/9 author = as.person("Anthony C. Davison [aut], David V. Hi nkley [aut]"),[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 2724--2724 []\T1/pcr/m/n/10 citEntry(entry, textVersion = NULL, header = NULL, footer = N ULL, ...) [2016] Underfull \hbox (badness 1082) in paragraph at lines 2753--2757 [][][]\T1/pcr/m/n/10 citation[][][] []\T1/ptm/m/n/10 for more in-for-ma-tion ab out cit-ing R and R pack-ages and `\T1/pcr/m/n/10 CITATION\T1/ptm/m/n/10 ' file s; pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard }) has been already used, duplicate ignored \relax l.2758 ... the Clipboard in MS Windows}{clipboard} [2017] [2018] Underfull \hbox (badness 10000) in paragraph at lines 2882--2884 []\T1/ptm/m/n/10 Compiling in sup-port for sock-ets was op-tional prior to \T1/ phv/m/n/10 R \T1/ptm/m/n/10 3.3.0: see [2019] [2020] [2021] [2022] Underfull \hbox (badness 10000) in paragraph at lines 3103--3105 []\T1/ptm/m/n/10 character string, in-di-cat-ing which type of pack-ages: see [2023] [2024] [2025] [2026] Underfull \hbox (badness 1762) in paragraph at lines 3396--3399 []\T1/ptm/m/n/10 To just look in the `\T1/pcr/m/n/10 data\T1/ptm/m/n/10 ' di-re c-tory of the cur-rent work-ing di-rec-tory, set []\T1/pcr/m/n/10 package = [2027] Overfull \hbox (63.78036pt too wide) in paragraph at lines 3484--3484 []\T1/pcr/m/n/9 try(data(package = "rpart"), silent = TRUE) # list the data se ts in the rpart package[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 3485--3485 []\T1/pcr/m/n/9 data(USArrests, "VADeaths") # load the data sets \TS1/pcr/m /n/9 '\T1/pcr/m/n/9 USArrests\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 and \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 VADeaths\TS1/pcr/m/n/9 '[] [2028] Underfull \hbox (badness 2452) in paragraph at lines 3559--3562 []\T1/ptm/m/n/10 The data en-try win-dow re-sponds to X re-sources of class []\ T1/pcr/m/n/10 R_dataentry[]\T1/ptm/m/n/10 . Re-sources [2029] [2030] [2031] [2032] [2033] [2034] Overfull \hbox (74.58035pt too wide) in paragraph at lines 3987--3987 [] \T1/pcr/m/n/9 DLL.version(file.path(R.home(), "library/stats/libs", .Platf orm$r_arch, "stats.dll"))[] [2035] [2036] Underfull \hbox (badness 4779) in paragraph at lines 4068--4073 []\T1/ptm/m/n/10 Support for method []\T1/pcr/m/n/10 "libcurl" []\T1/ptm/m/n/10 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use Underfull \hbox (badness 1072) in paragraph at lines 4131--4135 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/pcr/m/n/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [2037] Underfull \hbox (badness 7238) in paragraph at lines 4192--4197 []\T1/ptm/m/n/10 For the []\T1/pcr/m/n/10 "libcurl" []\T1/ptm/m/n/10 and []\T1/ pcr/m/n/10 "curl" []\T1/ptm/m/n/10 meth-ods, prox-ies can be set \T1/ptm/m/it/1 0 via \T1/ptm/m/n/10 the en-vi-ron- Underfull \hbox (badness 1337) in paragraph at lines 4192--4197 \T1/ptm/m/n/10 ment vari-ables []\T1/pcr/m/n/10 http_proxy []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 ftp_proxy[]\T1/ptm/m/n/10 . See [][]$\T1/pcr/m/n/10 https : / / curl . se / libcurl / c / Underfull \hbox (badness 1184) in paragraph at lines 4207--4223 \T1/ptm/m/n/10 string con-tain-ing `[]\T1/pcr/m/n/10 "Schannel"[]\T1/ptm/m/n/10 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron- [2038] [2039] Underfull \hbox (badness 4660) in paragraph at lines 4333--4336 \T1/ptm/m/n/10 able at the repos-i-to-ries, or []\T1/pcr/m/n/10 NULL []\T1/ptm/ m/n/10 which makes an in-ter-nal call to Underfull \hbox (badness 10000) in paragraph at lines 4357--4359 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/pcr/m/n/10 do wnload.file[][][] []\T1/ptm/m/n/10 and [2040] [2041] [2042] Underfull \hbox (badness 1565) in paragraph at lines 4544--4548 []\T1/ptm/m/n/10 Data frame columns are co-erced on in-put to \T1/ptm/m/it/10 c har-ac-ter \T1/ptm/m/n/10 un-less nu-meric (in the sense of [2043] Overfull \hbox (0.78088pt too wide) in paragraph at lines 4627--4627 [] \T1/pcr/m/n/10 character.only = FALSE, give.lines = FALSE, local = F ALSE,[] [2044] Underfull \hbox (badness 1910) in paragraph at lines 4662--4669 \T1/ptm/m/n/10 is saved, then ini-tial-ized to a spec-i-fied state, the ex-am-p le is run and Underfull \hbox (badness 1655) in paragraph at lines 4662--4669 \T1/ptm/m/n/10 the (saved) state is re-stored. []\T1/pcr/m/n/10 setRNG = TRUE [ ]\T1/ptm/m/n/10 sets the same state as Underfull \hbox (badness 2846) in paragraph at lines 4662--4669 []\T1/pcr/m/n/10 R CMD [][]check[][][] []\T1/ptm/m/n/10 does for run-ning a pac k-age's ex-am-ples. This is cur- Underfull \hbox (badness 3460) in paragraph at lines 4662--4669 \T1/ptm/m/n/10 rently equiv-a-lent to []\T1/pcr/m/n/10 setRNG = {RNGkind("defau lt", "default", Underfull \hbox (badness 1931) in paragraph at lines 4669--4676 []\T1/ptm/m/n/10 logical (or []\T1/pcr/m/n/10 "default"[]\T1/ptm/m/n/10 ) in-di -cat-ing if [][][]\T1/pcr/m/n/10 devAskNewPage[][][](ask = TRUE) [2045] [2046] [2047] [2048] Underfull \hbox (badness 5939) in paragraph at lines 4922--4924 []\T1/ptm/m/n/10 An en-try in []\T1/pcr/m/n/10 getOption("repos") []\T1/ptm/m/n /10 named `[]\T1/pcr/m/n/10 CRAN[]\T1/ptm/m/n/10 ' which is not the de-fault [2049] [2050] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5065--5065 []\T1/pcr/m/n/9 # Set a breakpoint in both copies of that function, assuming o ne is in the[] [2051]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.for mat}) has been already used, duplicate ignored \relax l.5136 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.5136 ...mat Unordered and Ordered Lists}{format} [2052] [2053] [2054] [2055] [2056] [2057] [2058] [2059] Underfull \hbox (badness 1622) in paragraph at lines 5659--5663 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2060] [2061] [2062] [2063] [2064] [2065] Underfull \hbox (badness 1448) in paragraph at lines 6044--6049 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2066] [2067] Overfull \hbox (96.78088pt too wide) in paragraph at lines 6193--6193 []\T1/pcr/m/n/10 ## NB: The methods for \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 data.f rame\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 and \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 array\ TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 are identical to the \TS1/pcr/m/n/10 '\T1/pcr/ m/n/10 matrix\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 one[] Overfull \hbox (66.78088pt too wide) in paragraph at lines 6205--6205 []\T1/pcr/m/n/10 tail(x, n = 6L, keepnums = TRUE, addrownums, ...) # exported as tail.matrix()[] [2068] [2069] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6347--6347 [] \T1/pcr/m/n/9 ## BUT if I use "useAttrib(.)", this is *not* ok, when n i s of length 2:[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 6348--6348 [] \T1/pcr/m/n/9 ## --- because [i,j]-indexing of data frames *also* drops "other" attributes ..[] [2070] [2071] [2072] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6558--6558 [] \T1/pcr/m/n/9 ## -> nicely formatted pdf -- including math formula -- for h elp(dgamma):[] [2073] Underfull \hbox (badness 10000) in paragraph at lines 6642--6644 []\T1/ptm/m/n/10 The post-ing guide ([][]$\T1/pcr/m/n/10 https : / / www . r-[] project . org / posting-[]guide . html$[][]\T1/ptm/m/n/10 ), also [2074] Underfull \hbox (badness 1502) in paragraph at lines 6691--6697 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6691--6697 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2075] [2076] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6812--6812 []\T1/pcr/m/n/9 help.search("linear models") # In case you forgot how to fit linear models[] Underfull \hbox (badness 10000) in paragraph at lines 6871--6880 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in- Underfull \hbox (badness 10000) in paragraph at lines 6871--6880 \T1/ptm/m/n/10 dex, `\T1/ptm/m/sl/10 R_DOC_DIR\T1/pcr/m/n/10 /html/packages.htm l\T1/ptm/m/n/10 ', which can be re-made by [2077] Underfull \hbox (badness 2150) in paragraph at lines 6933--6936 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2078] Underfull \hbox (badness 5175) in paragraph at lines 6949--6952 []\T1/pcr/m/n/10 hsearch_db() []\T1/ptm/m/n/10 builds and caches the help searc h database for sub-se-quent use by [2079] Underfull \hbox (badness 3118) in paragraph at lines 7072--7074 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2080] [2081] [2082] Underfull \hbox (badness 10000) in paragraph at lines 7277--7284 []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 means to use []\T1/pcr/m/n/10 c("Depends ", "Imports", "LinkingTo", Underfull \hbox (badness 10000) in paragraph at lines 7277--7284 \T1/pcr/m/n/10 "Suggests") []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pkgs []\T1/ptm /m/n/10 and []\T1/pcr/m/n/10 c("Depends", "Imports", Underfull \hbox (badness 1270) in paragraph at lines 7277--7284 \T1/pcr/m/n/10 "LinkingTo") []\T1/ptm/m/n/10 for added de-pen-den-cies: this in -stalls all the pack-ages Underfull \hbox (badness 1270) in paragraph at lines 7292--7302 \T1/ptm/m/n/10 for the `[]\T1/pcr/m/n/10 --configure-args[]\T1/ptm/m/n/10 ' fla g in the call to []\T1/pcr/m/n/10 R CMD INSTALL[]\T1/ptm/m/n/10 . If [2083] Underfull \hbox (badness 1975) in paragraph at lines 7334--7338 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be passed to []\T1/pcr/m/n/10 R Underfull \hbox (badness 4913) in paragraph at lines 7334--7338 \T1/pcr/m/n/10 CMD INSTALL []\T1/ptm/m/n/10 for a source pack-age in-stall. E.g ., []\T1/pcr/m/n/10 c("--html", Underfull \hbox (badness 10000) in paragraph at lines 7334--7338 \T1/pcr/m/n/10 "--no-multiarch", "--no-test-load") []\T1/ptm/m/n/10 or, for ma- cOS, Underfull \hbox (badness 1424) in paragraph at lines 7343--7346 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to Underfull \hbox (badness 10000) in paragraph at lines 7356--7360 []\T1/ptm/m/n/10 further ar-gu-ments to be passed to [][][]\T1/pcr/m/n/10 downl oad.file[][][][]\T1/ptm/m/n/10 , [2084] Underfull \hbox (badness 2376) in paragraph at lines 7424--7431 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/pcr/m/n /10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7424--7431 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7424--7431 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1087) in paragraph at lines 7432--7435 []\T1/ptm/m/n/10 Using pack-ages with []\T1/pcr/m/n/10 type = "source" []\T1/pt m/m/n/10 al-ways works pro-vided the pack-age con-tains no [2085] Underfull \hbox (badness 1314) in paragraph at lines 7505--7512 []\T1/pcr/m/n/10 install.packages []\T1/ptm/m/n/10 needs to be able to com-pute all the de-pen-den-cies of []\T1/pcr/m/n/10 pkgs []\T1/ptm/m/n/10 from [2086] Underfull \hbox (badness 10000) in paragraph at lines 7588--7593 [][][]\T1/pcr/m/n/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/ 10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 download.pac kages[][][][]\T1/ptm/m/n/10 , Overfull \hbox (25.98041pt too wide) in paragraph at lines 7611--7611 [] \T1/pcr/m/n/9 configure.args = c(RNetCDF = "--with-netcdf-include=/usr/inc lude/udunits2"))[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 7629--7629 [] \T1/pcr/m/n/10 str2logical(Sys.getenv("R_PACKAGES_CAC HE_USER_DIR",[] [2087] Underfull \hbox (badness 10000) in paragraph at lines 7650--7653 [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 in-di-cat-ing if caching sh ould hap-pen in \T1/ptm/b/n/10 tools\T1/ptm/m/n/10 ' Underfull \hbox (badness 5133) in paragraph at lines 7654--7658 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each pack-age's Underfull \hbox (badness 1983) in paragraph at lines 7668--7671 []\T1/pcr/m/n/10 installed.packages []\T1/ptm/m/n/10 scans the `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' files of each pack-age found along Overfull \hbox (9.78043pt too wide) in paragraph at lines 7715--7715 []\T1/pcr/m/n/9 plic <- installed.packages(.Library, priority = "high", fields = "License")[] [2088] Overfull \hbox (15.18042pt too wide) in paragraph at lines 7720--7720 []\T1/pcr/m/n/9 ## Keep packages that come with R (priority="high") and all ot hers separate![] [2089] [2090] Underfull \hbox (badness 4132) in paragraph at lines 7846--7848 []\T1/ptm/m/n/10 The ac-tual link-ing com-mand is con-structed by the ver-sion of []\T1/pcr/m/n/10 libtool []\T1/ptm/m/n/10 in-stalled at [2091] [2092] [2093] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8013--8013 []\T1/pcr/m/n/9 ls.str(mode = "list") #- what are the structured objects I h ave defined?[] [2094] [2095] Overfull \hbox (0.78088pt too wide) in paragraph at lines 8156--8156 []\T1/pcr/m/n/10 make.socket(host = "localhost", port, fail = TRUE, server = F ALSE) [2096] Underfull \hbox (badness 10000) in paragraph at lines 8196--8198 []\T1/ptm/m/n/10 Compiling in sup-port for sock-ets was op-tional prior to \T1/ phv/m/n/10 R \T1/ptm/m/n/10 3.3.0: see [2097] Overfull \hbox (36.78088pt too wide) in paragraph at lines 8288--8288 [] \T1/pcr/m/n/10 methods(generic.function, class, all.names = FALSE, dropPa th = FALSE)[] Overfull \hbox (132.78088pt too wide) in paragraph at lines 8290--8290 [] \T1/pcr/m/n/10 all.names = FALSE, dropPa th = FALSE, useEnv = FALSE)[] Underfull \hbox (badness 10000) in paragraph at lines 8303--8305 []\T1/ptm/m/n/10 a sym-bol or char-ac-ter string nam-ing a class: only used if Underfull \hbox (badness 10000) in paragraph at lines 8321--8323 []\T1/ptm/m/n/10 typically the re-sult of []\T1/pcr/m/n/10 methods(..)[]\T1/ptm /m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2098] [2099] [2100] [2101] Underfull \hbox (badness 1859) in paragraph at lines 8553--8556 []\T1/ptm/m/n/10 logical spec-i-fy-ing that the news should be opened in the br owser (by [2102] [2103] Overfull \hbox (25.98041pt too wide) in paragraph at lines 8681--8681 []\T1/pcr/m/n/9 db4 <- news(Version == "4.0.0" & grepl("^BUG", Category) & gre pl("PR#", Text),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8687--8687 []\T1/pcr/m/n/9 ## News from a date range (\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 Matri x\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 is there in a regular R installation):[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 8695--8695 []\T1/pcr/m/n/9 ## Which categories have been in use? % R-core maybe should st andardize a bit more[] [2104] Underfull \hbox (badness 1917) in paragraph at lines 8782--8784 []\T1/pcr/m/n/10 "B"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "KiB"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "MiB"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "GiB"[]\T1/ptm/m/n/1 0 , []\T1/pcr/m/n/10 "TiB"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "PiB"[]\T1/ptm/m/ n/10 , Underfull \hbox (badness 1331) in paragraph at lines 8790--8794 []\T1/ptm/m/n/10 For all stan-dards, []\T1/pcr/m/n/10 units = "auto" []\T1/ptm/ m/n/10 is also al-lowed. If []\T1/pcr/m/n/10 standard = [2105] [2106] [2107] Underfull \hbox (badness 7099) in paragraph at lines 8954--8959 []\T1/ptm/m/n/10 optionally a [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/ n/10 string with an en-cod-ing for an op-tional [2108] Overfull \hbox (66.78088pt too wide) in paragraph at lines 9056--9056 [] \T1/pcr/m/n/10 date.fields = c("Date", "Packaged", "Date/Publica tion", "Built"),[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 9057--9057 [] \T1/pcr/m/n/10 tryFormats = c("%Y-%m-%d", "%Y/%m/%d", "%D", "%m/ %d/%y"),[] Overfull \hbox (84.78088pt too wide) in paragraph at lines 9058--9058 [] \T1/pcr/m/n/10 desc = packageDescription(pkg, lib.loc=lib.loc, f ields=date.fields))[] [2109] Underfull \hbox (badness 10000) in paragraph at lines 9086--9088 []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 asDateBuilt()[]\T1/ptm/m/n/10 , a [][][]\ T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string as from Underfull \hbox (badness 10000) in paragraph at lines 9100--9102 []\T1/pcr/m/n/10 packageVersion() []\T1/ptm/m/n/10 is a con-ve-nience short-cut , al-low-ing things like []\T1/pcr/m/n/10 if Underfull \hbox (badness 1259) in paragraph at lines 9108--9113 []\T1/ptm/m/n/10 If a `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2110] Overfull \hbox (9.78043pt too wide) in paragraph at lines 9152--9152 [] \T1/pcr/m/n/9 identical(pu, packageDate("stats"))) # as "utils" an d "stats" are[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 9153--9153 [] \T1/pcr/m/n/9 # both \TS1/pcr/m/n/9 '\T1/ pcr/m/n/9 base R\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 and "Built" at same time[] [2111] [2112] Underfull \hbox (badness 10000) in paragraph at lines 9279--9284 []\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 "Status"[]\T1/ptm/m/n/10 , a fac-tor wit h lev-els []\T1/pcr/m/n/10 c("ok", "upgrade", Underfull \hbox (badness 10000) in paragraph at lines 9286--9289 []\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 "Status"[]\T1/ptm/m/n/10 , a fac-tor wit h lev-els []\T1/pcr/m/n/10 c("installed", "not [2113] [2114] Overfull \hbox (0.78088pt too wide) in paragraph at lines 9403--9403 [] \T1/pcr/m/n/10 include = c("given", "family", "email", "role", "comme nt"),[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 9404--9404 [] \T1/pcr/m/n/10 braces = list(given = "", family = "", email = c("<", ">"),[] [2115] [2116] Overfull \hbox (4.38043pt too wide) in paragraph at lines 9591--9591 [] \T1/pcr/m/n/9 "S original, "),[] [2117] [2118] [2119] Underfull \hbox (badness 1789) in paragraph at lines 9764--9766 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2120] [2121] [2122] [2123] Underfull \hbox (badness 2600) in paragraph at lines 9988--9991 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic; de-faults to [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] Overfull \hbox (30.78088pt too wide) in paragraph at lines 10611--10611 [] \T1/pcr/m/n/10 dec = ".", numerals = c("allow.loss", "warn.loss", " no.loss"),[] [2132] [2133] Overfull \hbox (20.58041pt too wide) in paragraph at lines 10772--10772 []\T1/pcr/m/n/9 dd <- read.DIF(file.path(udir, "exDIF.dif"), header = TRUE, tr anspose = TRUE)[] [2134] [2135] [2136] Overfull \hbox (4.38043pt too wide) in paragraph at lines 10953--10953 []\T1/pcr/m/n/9 read.fwf(ff, widths = list(c(1,0, 2,3), c(2,2,2))) #> 1 NA 23 456 98 76 54[] [2137] Overfull \hbox (42.78088pt too wide) in paragraph at lines 11039--11039 [] \T1/pcr/m/n/10 dec = ".", numerals = c("allow.loss", "warn.loss", "no.loss"),[] [2138] Overfull \hbox (72.78088pt too wide) in paragraph at lines 11040--11040 [] \T1/pcr/m/n/10 row.names, col.names, as.is = !stringsAsFactors, t ryLogical = TRUE,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 11042--11042 [] \T1/pcr/m/n/10 skip = 0, check.names = TRUE, fill = !blank.lines. skip,[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 11047--11047 [] \T1/pcr/m/n/10 fileEncoding = "", encoding = "unknown", text, ski pNul = FALSE)[] [2139] Underfull \hbox (badness 2027) in paragraph at lines 11119--11122 []\T1/ptm/m/n/10 Using []\T1/pcr/m/n/10 row.names = NULL []\T1/ptm/m/n/10 force s row num-ber-ing. Miss-ing or []\T1/pcr/m/n/10 NULL Underfull \hbox (badness 2435) in paragraph at lines 11142--11146 []\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 de-ter-m in-ing if columns con-sist-ing en-tirely of []\T1/pcr/m/n/10 "F"[]\T1/ptm/m/n/1 0 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1824) in paragraph at lines 11142--11146 []\T1/pcr/m/n/10 "FALSE"[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 "TRUE" []\T1/pt m/m/n/10 should be con-verted to [][][]\T1/pcr/m/n/10 logical[][][][]\T1/ptm/m/ n/10 ; passed to [2140] [2141] [2142] Overfull \hbox (12.78088pt too wide) in paragraph at lines 11404--11404 []\T1/pcr/m/n/10 readRegistry(key, hive = c("HLM", "HCR", "HCU", "HU", "HCC", "HPD"), Overfull \hbox (6.78088pt too wide) in paragraph at lines 11405--11405 [] \T1/pcr/m/n/10 maxdepth = 1, view = c("default", "32-bit", "64- bit"))[] Underfull \hbox (badness 10000) in paragraph at lines 11412--11417 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are Underfull \hbox (badness 10000) in paragraph at lines 11412--11417 \T1/ptm/m/n/10 for []\T1/pcr/m/n/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/ pcr/m/n/10 HKEY_CLASSES_ROOT[]\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 11412--11417 []\T1/pcr/m/n/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 HKEY_USER S[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 HKEY_CURRENT_CONFIG [2143] [2144] [2145] [2146] Overfull \hbox (18.78088pt too wide) in paragraph at lines 11644--11644 [] \T1/pcr/m/n/10 ipar <- list(mean = c(0, 1), vcov = c bind(c(1, 1), c (1, 0))) [2147] [2148] [2149] [2150] Underfull \hbox (badness 2469) in paragraph at lines 11910--11914 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2024). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 10000) in paragraph at lines 11910--11914 [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = [2151] Overfull \hbox (25.98041pt too wide) in paragraph at lines 11928--11928 []\T1/pcr/m/n/9 as.roman(c(NA, 1:3, "", strrep("I", 1:7))) # + NA with a warni ng for the last.[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 11933--11933 []\T1/pcr/m/n/9 ## simple consistency checks -- arithmetic when result is in {1,2,..,4999} :[] [2152] [2153] Overfull \hbox (18.78088pt too wide) in paragraph at lines 12087--12087 []\T1/pcr/m/n/10 4. | \-base:::tryCatchOne(expr, names, parentenv, handler s[[1L]])[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 12088--12088 []\T1/pcr/m/n/10 5. | \-base:::doTryCatch(return(expr), name, parentenv, handler)[] [2154] Underfull \hbox (badness 10000) in paragraph at lines 12190--12192 []\T1/ptm/m/n/10 The chap-ter on ``Tidy-ing and pro-fil-ing R code'' in `Writ-i ng R Ex-ten-sions': [2155] Overfull \hbox (0.78088pt too wide) in paragraph at lines 12223--12223 []\T1/pcr/m/n/10 Rprofmem(filename = "Rprofmem.out", append = FALSE, threshold = 0) [2156] [2157] Underfull \hbox (badness 1917) in paragraph at lines 12356--12359 []\T1/ptm/m/n/10 If `[]\T1/pcr/m/n/10 --default-packages[]\T1/ptm/m/n/10 ' is n ot used, then []\T1/pcr/m/n/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-me nt vari- Underfull \hbox (badness 4328) in paragraph at lines 12356--12359 \T1/ptm/m/n/10 able []\T1/pcr/m/n/10 R_SCRIPT_DEFAULT_PACKAGES[]\T1/ptm/m/n/10 . If this is set, then it takes prece-dence over Overfull \hbox (106.98032pt too wide) in paragraph at lines 12379--12379 []\T1/pcr/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 sessionInfo()\TS1/pcr/m/n/9 '[] [2158] Overfull \hbox (54.78088pt too wide) in paragraph at lines 12471--12471 [] \T1/pcr/m/n/10 restrict = c("functions", "descriptions", "news", "Rfunctions",[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 12472--12472 [] \T1/pcr/m/n/10 "Rmanuals", "READMEs", "views", "vig nettes"),[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 12474--12474 [] \T1/pcr/m/n/10 sortby = c("score", "date:late", "date:early", "s ubject",[] [2159] Overfull \hbox (36.78088pt too wide) in paragraph at lines 12475--12475 [] \T1/pcr/m/n/10 "subject:descending", "size", "size:de scending"),[] Underfull \hbox (badness 6725) in paragraph at lines 12498--12506 \T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 score[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 date: late []\T1/ptm/m/n/10 for sort-ing by date with lat-est re-sults first, Underfull \hbox (badness 2662) in paragraph at lines 12498--12506 \T1/ptm/m/n/10 der, []\T1/pcr/m/n/10 subject:descending []\T1/ptm/m/n/10 for re -verse al-pha-bet-i-cal or-der, []\T1/pcr/m/n/10 size []\T1/ptm/m/n/10 or [2160] Overfull \hbox (9.78043pt too wide) in paragraph at lines 12543--12543 []\T1/pcr/m/n/9 fullquery <- RSiteSearch("lattice", restrict = c("vignettes"," Rfunctions"))[] Underfull \hbox (badness 1377) in paragraph at lines 12599--12602 []\T1/ptm/m/n/10 Character string spec-i-fy-ing whether emacs style ([]\T1/pcr/ m/n/10 "etags"[]\T1/ptm/m/n/10 ) or vi style [2161] Underfull \hbox (badness 3646) in paragraph at lines 12634--12636 [][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p tm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / www . gnu . org / software / Overfull \hbox (30.78088pt too wide) in paragraph at lines 12672--12672 [] \T1/pcr/m/n/10 split = FALSE, quiet = FALSE, drop.evalFALSE = F ALSE, ...)[] [2162] [2163] [2164] Underfull \hbox (badness 10000) in paragraph at lines 12854--12858 []\T1/ptm/m/n/10 The de-fault for []\T1/pcr/m/n/10 stylepath []\T1/ptm/m/n/10 i s now taken from the en-vi-ron-ment vari-able [2165] Underfull \hbox (badness 10000) in paragraph at lines 12887--12893 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a Underfull \hbox (badness 2027) in paragraph at lines 12902--12908 []\T1/ptm/m/n/10 The use of fancy quotes (see [][][]\T1/pcr/m/n/10 sQuote[][][] []\T1/ptm/m/n/10 ) can cause prob-lems when set-ting \T1/phv/m/n/10 R \T1/ptm/m /n/10 out-put in [2166] [2167] Overfull \hbox (6.78088pt too wide) in paragraph at lines 13059--13059 [] \T1/pcr/m/n/10 units = "in", type = "quartz", bg = "transpa rent")[] Underfull \hbox (badness 1009) in paragraph at lines 13077--13089 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If Underfull \hbox (badness 2600) in paragraph at lines 13117--13119 []\T1/ptm/m/n/10 The file `\T1/pcr/m/n/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ures the R GUI ([]\T1/pcr/m/n/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows and [2168] Underfull \hbox (badness 1043) in paragraph at lines 13160--13165 []\T1/ptm/m/n/10 At the time of writ-ing `\T1/pcr/m/n/10 Rdevga\T1/ptm/m/n/10 ' con-fig-ured the map-ping of font num-bers to fonts, and [2169] [2170] [2171] [2172] [2173] Underfull \hbox (badness 10000) in paragraph at lines 13479--13482 []\T1/ptm/m/n/10 (not al-ways present): a named list of the re-sults of call-in g Underfull \hbox (badness 10000) in paragraph at lines 13482--13485 []\T1/ptm/m/n/10 (not al-ways present): a named list of the re-sults of call-in g [2174] Overfull \hbox (9.78043pt too wide) in paragraph at lines 13528--13528 []\T1/pcr/m/n/9 toLatex(sI, locale = FALSE) # shortest; possibly desirable at end of report[] Underfull \hbox (badness 2158) in paragraph at lines 13590--13593 []\T1/ptm/m/n/10 Repository `[]\T1/pcr/m/n/10 CRAN[]\T1/ptm/m/n/10 ' is treated spe-cially: the value is taken from the cur-rent set-ting of [2175] Overfull \hbox (0.78088pt too wide) in paragraph at lines 13643--13643 []\T1/pcr/m/n/10 setWindowTitle(suffix, title = paste(getIdentification(), suf fix)) [2176] [2177] Underfull \hbox (badness 2302) in paragraph at lines 13800--13802 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2178] [2179] Underfull \hbox (badness 3333) in paragraph at lines 13908--13910 []\T1/pcr/m/n/10 getSrcFilename []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 getSrcDir ectory []\T1/ptm/m/n/10 re-turn char-ac-ter vec-tors hold-ing the file- [2180] [2181] [2182] Overfull \hbox (42.78088pt too wide) in paragraph at lines 14075--14075 [] \T1/pcr/m/n/10 format(x, trim = TRUE, drop0trailing = TRUE, ...))[] Underfull \hbox (badness 5970) in paragraph at lines 14108--14111 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive Underfull \hbox (badness 2600) in paragraph at lines 14108--14111 [][][]\T1/pcr/m/n/10 options[][][]("width")[]\T1/ptm/m/n/10 ; note that this ha s only a weak ef-fect, un-less Underfull \hbox (badness 1052) in paragraph at lines 14119--14128 []\T1/ptm/m/n/10 (see [][][]\T1/pcr/m/n/10 options[][][][]\T1/ptm/m/n/10 ) whic h de-faults to []\T1/pcr/m/n/10 "no" []\T1/ptm/m/n/10 for back com-pat-i-bil-it y rea-sons; [2183] Underfull \hbox (badness 1442) in paragraph at lines 14135--14139 []\T1/ptm/m/n/10 numeric or []\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 as by de-fau lt, de-ter-min-ing the []\T1/pcr/m/n/10 nlines []\T1/ptm/m/n/10 ar-gu-ment to Overfull \hbox (36.7804pt too wide) in paragraph at lines 14181--14181 []\T1/pcr/m/n/9 str(.Machine, digits.d = 20) # extra digits for identification of binary numbers[] [2184] Overfull \hbox (15.18042pt too wide) in paragraph at lines 14208--14208 []\T1/pcr/m/n/9 ## Truncation behavior (<-> correct width measurement) for "lo ng" non-ASCII:[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 14215--14215 []\T1/pcr/m/n/9 ## nchar.max: 1st line needs an increase of 2 in order to se e 1 (in UTF-8!):[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 14217--14217 []\T1/pcr/m/n/9 invisible(lapply(60:66, function(N) str( ch , nchar.max = N))) # "1 is 1" here[] [2185] [2186] [2187] Underfull \hbox (badness 10000) in paragraph at lines 14382--14384 []\T1/ptm/m/n/10 Options other than []\T1/pcr/m/n/10 memory = "none" []\T1/ptm/ m/n/10 ap-ply only to files pro-duced by Underfull \hbox (badness 10000) in paragraph at lines 14428--14430 []\T1/ptm/m/n/10 The chap-ter on `Tidy-ing and pro-fil-ing R code' in `Writ-ing R Ex-ten-sions': [2188] Underfull \hbox (badness 10000) in paragraph at lines 14491--14494 []\T1/ptm/m/n/10 further ar-gu-ments passed to the driver's setup func-tion. Se e Underfull \hbox (badness 1389) in paragraph at lines 14491--14494 [][][]\T1/pcr/m/n/10 RweaveLatexSetup[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/ m/n/10 RtangleSetup[][][][]\T1/ptm/m/n/10 , re-spec-tively, for the ar-gu- [2189] Underfull \hbox (badness 6300) in paragraph at lines 14539--14546 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fau lt) then the avail-able syn-tax ob-jects are con-sulted in Underfull \hbox (badness 6252) in paragraph at lines 14539--14546 \T1/ptm/m/n/10 turn, and se-lected if their []\T1/pcr/m/n/10 extension []\T1/pt m/m/n/10 com-po-nent matches (as a reg-exp) the file Underfull \hbox (badness 4556) in paragraph at lines 14539--14546 \T1/ptm/m/n/10 name. Ob-jects []\T1/pcr/m/n/10 SweaveSyntaxNoweb []\T1/ptm/m/n/ 10 (with []\T1/pcr/m/n/10 extension = "[.][rsRS]nw$"[]\T1/ptm/m/n/10 ) and [2190] [2191] Underfull \hbox (badness 2020) in paragraph at lines 14704--14710 \T1/ptm/m/n/10 si-bly use-ful val-ues in-clude `[]\T1/pcr/m/n/10 -h[]\T1/ptm/m/ n/10 ' (fol-low sym-bolic links, also `[]\T1/pcr/m/n/10 -L[]\T1/ptm/m/n/10 ' on some plat-forms), Underfull \hbox (badness 1194) in paragraph at lines 14704--14710 \T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 --acls[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 -- exclude-backups[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 --exclude-vcs[]\T1/ptm/m/n /10 ' (and sim-i-lar) and on Win-dows [2192] Underfull \hbox (badness 1622) in paragraph at lines 14711--14718 []\T1/ptm/m/n/10 A con-ve-nient and ro-bust way to set op-tions for GNU []\T1/p cr/m/n/10 tar []\T1/ptm/m/n/10 is via en-vi-ron-ment vari-able [2193] Underfull \hbox (badness 5022) in paragraph at lines 14867--14871 []\T1/ptm/m/n/10 When ar-gu-ment []\T1/pcr/m/n/10 tar []\T1/ptm/m/n/10 is set t o the com-mand []\T1/pcr/m/n/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-able [2194] Underfull \hbox (badness 10000) in paragraph at lines 14874--14877 [][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ f ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / pubs . Underfull \hbox (badness 10000) in paragraph at lines 14874--14877 \T1/pcr/m/n/10 opengroup . org / onlinepubs / 9699919799 / utilities / pax . ht ml # tag _ 20 _ 92 _ [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] Overfull \hbox (6.78088pt too wide) in paragraph at lines 15493--15493 [] \T1/pcr/m/n/10 instPkgs = installed.packages(lib.loc = lib.loc, ...),[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 15499--15499 [] \T1/pcr/m/n/10 instPkgs = installed.packages(lib.loc = lib.loc, ...),[] [2203] Underfull \hbox (badness 4660) in paragraph at lines 15536--15540 \T1/ptm/m/n/10 able at the repos-i-to-ries, or []\T1/pcr/m/n/10 NULL []\T1/ptm/ m/n/10 which makes an in-ter-nal call to Underfull \hbox (badness 1694) in paragraph at lines 15550--15554 []\T1/ptm/m/n/10 by de-fault all in-stalled pack-ages, [][][]\T1/pcr/m/n/10 ins talled.packages[][][](lib.loc = Underfull \hbox (badness 10000) in paragraph at lines 15556--15561 []\T1/ptm/m/n/10 Arguments such as []\T1/pcr/m/n/10 destdir []\T1/ptm/m/n/10 an d []\T1/pcr/m/n/10 dependencies []\T1/ptm/m/n/10 to be Underfull \hbox (badness 10000) in paragraph at lines 15556--15561 \T1/ptm/m/n/10 passed to [][][]\T1/pcr/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 and []\T1/pcr/m/n/10 ignore_repo_cache[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15556--15561 []\T1/pcr/m/n/10 max_repo_cache_age []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 noCac he []\T1/ptm/m/n/10 to [][][]\T1/pcr/m/n/10 available.packages[][][] Underfull \hbox (badness 1052) in paragraph at lines 15562--15564 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2204] Underfull \hbox (badness 10000) in paragraph at lines 15592--15597 []\T1/pcr/m/n/10 available = NULL []\T1/ptm/m/n/10 make a call to []\T1/pcr/m/n /10 available.packages(contriburl = Underfull \hbox (badness 1226) in paragraph at lines 15592--15597 \T1/pcr/m/n/10 contriburl, method = method) []\T1/ptm/m/n/10 and hence by de-fa ult fil-ters on \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sion, OS type Underfull \hbox (badness 10000) in paragraph at lines 15613--15618 []\T1/ptm/m/n/10 Take care when us-ing []\T1/pcr/m/n/10 dependencies []\T1/ptm/ m/n/10 (passed to [][][]\T1/pcr/m/n/10 install.packages[][][][]\T1/ptm/m/n/10 ) with Underfull \hbox (badness 10000) in paragraph at lines 15621--15624 [][][]\T1/pcr/m/n/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n /10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 download.pa ckages[][][][]\T1/ptm/m/n/10 , [2205] Overfull \hbox (15.18042pt too wide) in paragraph at lines 15698--15698 []\T1/pcr/m/n/9 ## Not run: url.show("https://www.stats.ox.ac.uk/pub/datasets/ csb/ch3a.txt") [2206] [2207] [2208] Underfull \hbox (badness 4832) in paragraph at lines 15899--15902 [][][]\T1/pcr/m/n/10 browseVignettes[][][] []\T1/ptm/m/n/10 for an HTML-based v i-gnette browser; [][][]\T1/pcr/m/n/10 RShowDoc[][][]("\T1/ptm/m/sl/10 basename \T1/pcr/m/n/10 ", [2209] Overfull \hbox (42.18039pt too wide) in paragraph at lines 15915--15915 []\T1/pcr/m/n/9 ## Note that \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 package = *\TS1/pcr /m/n/9 ' \T1/pcr/m/n/9 is much faster in the case of many installed packages:[] [2210] Overfull \hbox (4.38043pt too wide) in paragraph at lines 15982--15982 [] \T1/pcr/m/n/9 lm(weight ~ (Time + I(Time^2)) * Diet, d ata = DAT)))[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 16004--16004 [] \T1/pcr/m/n/9 nls(weight ~ SSlogis(Time, Asym, xmid, scal), data = DD)))[] [2211] [2212] Underfull \hbox (badness 1297) in paragraph at lines 16136--16138 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the ac-tion when that menu i s se-lected, or [2213] Underfull \hbox (badness 4036) in paragraph at lines 16183--16185 []\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 winMenuDel []\T1/ptm/m/n/10 func-tion wil l delete a menu and all of its items and sub-menus. [2214] [2215] Overfull \hbox (0.78088pt too wide) in paragraph at lines 16303--16303 []\T1/pcr/m/n/10 write.table(x, file = "", append = FALSE, quote = TRUE, sep = " ", [2216] Underfull \hbox (badness 1715) in paragraph at lines 16355--16358 []\T1/ptm/m/n/10 arguments to []\T1/pcr/m/n/10 write.table[]\T1/ptm/m/n/10 : [] \T1/pcr/m/n/10 append[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 col.names[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 sep[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 dec []\T1/ptm/m/n /10 and Underfull \hbox (badness 10000) in paragraph at lines 16400--16402 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion e.g. []\T1/pcr/m/n/10 file = [2217] [2218] [2219]) [2220] [2221] [2222] (./KernSmooth-pkg.tex Chapter 15. [2223] Overfull \hbox (24.78088pt too wide) in paragraph at lines 123--123 []\T1/pcr/m/n/10 bkde2D(x, bandwidth, gridsize = c(51L, 51L), range.x, truncat e = TRUE) [2224] [2225] [2226] [2227] [2228] Overfull \hbox (18.78088pt too wide) in paragraph at lines 518--518 []\T1/pcr/m/n/10 dpill(x, y, blockmax = 5, divisor = 20, trim = 0.01, proptrun = 0.05, [2229] [2230] [2231] [2232]) (./MASS-pkg.tex Chapter 16. [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] [2241] [2242] [2243] Overfull \hbox (20.58041pt too wide) in paragraph at lines 774--774 []\T1/pcr/m/n/9 dreg <- cbind(sin = sin(2*pi*beav2$hours/24), cos = cos(2*pi*b eav2$hours/24))[] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252] [2253]pdfTeX war ning (ext4): destination with the same identifier (name{Rfn.confint.glm}) has b een already used, duplicate ignored \relax l.1477 ...{confint.glm}{confint-MASS}{confint.glm} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.confint.nls}) has been already used, d uplicate ignored \relax l.1478 ...{confint.nls}{confint-MASS}{confint.nls} [2254] [2255] [2256] [2257] [2258] [2259] [2260] [2261] [2262] [2263] [2264] [2265] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2328--2328 []\T1/pcr/m/n/10 dropterm(object, scope, scale = 0, test = c("none", "Chisq", "F"),[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2332--2332 []\T1/pcr/m/n/10 dropterm(object, scope, scale = 0, test = c("none", "Chisq", "F"),[] [2266] [2267] [2268] [2269] Underfull \hbox (badness 6559) in paragraph at lines 2616--2619 []\T1/ptm/m/n/10 further ar-gu-ments for []\T1/pcr/m/n/10 plot []\T1/ptm/m/n/10 and graph-i-cal pa-ram-e-ters. Note that [2270] [2271] [2272] Underfull \hbox (badness 10000) in paragraph at lines 2790--2795 []\T1/pcr/m/n/10 "gamma"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "geometric"[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 "log-normal"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lo gnormal"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2790--2795 []\T1/pcr/m/n/10 "logistic"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "negative binomi al"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "normal"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n /10 "Poisson"[]\T1/ptm/m/n/10 , [2273] [2274] Underfull \hbox (badness 4686) in paragraph at lines 2962--2964 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2275] [2276] [2277] Overfull \hbox (18.78088pt too wide) in paragraph at lines 3162--3162 [] \T1/pcr/m/n/10 eps.max = .Machine$double.eps^0.25, verbose = FAL SE, ...)[] [2278] [2279] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3292--3292 []\T1/pcr/m/n/9 survreg(Surv(time, cens) ~ factor(pair) + treat, gehan, dist = "exponential")[] [2280] [2281] [2282] [2283] [2284] [2285] [2286] [2287] [2288] [2289] [2290] Underfull \hbox (badness 1845) in paragraph at lines 4091--4093 []\T1/ptm/m/n/10 The va-ri-ety of bar-ley ([]\T1/pcr/m/n/10 "manchuria"[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 "svansota"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "velv et"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "trebi" []\T1/ptm/m/n/10 and [2291] [2292] [2293] [2294] [2295] [2296] [2297] Overfull \hbox (0.78088pt too wide) in paragraph at lines 4585--4585 [] \T1/pcr/m/n/10 col = 5, xlab = deparse(substitute(data)), bty = "n", ...)[] [2298] [2299] [2300] Overfull \hbox (18.78088pt too wide) in paragraph at lines 4807--4807 []\T1/pcr/m/n/10 lm.ridge(formula, data, subset, na.action, lambda = 0, model = FALSE, [2301] [2302] [2303] [2304] [2305] [2306] [2307] [2308] [2309] [2310] [2311] [2312] [2313] [2314] Overfull \hbox (42.78088pt too wide) in paragraph at lines 5864--5864 []\T1/pcr/m/n/10 mvrnorm(n = 1, mu, Sigma, tol = 1e-6, empirical = FALSE, EISP ACK = FALSE) [2315] Overfull \hbox (48.78088pt too wide) in paragraph at lines 5925--5925 []\T1/pcr/m/n/10 negative.binomial(theta = stop("\TS1/pcr/m/n/10 '\T1/pcr/m/n/ 10 theta\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 must be specified"), link = "log") [2316] [2317]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.npk}) has been already used, duplicate ignored \relax l.6085 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica te ignored \relax l.6085 ...sical N, P, K Factorial Experiment}{npk} [2318] [2319] [2320] [2321] [2322] [2323] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6504--6504 [] \T1/pcr/m/n/9 start = list(fixed=c(L75=c(48.7, -0.03), lsc=0.24)), verb ose = TRUE)))[] [2324] Overfull \hbox (18.78088pt too wide) in paragraph at lines 6592--6592 [] \T1/pcr/m/n/10 dimen, abbrev = FALSE, ..., cex=0.7, type = c("std", "tr ellis"))[] [2325] [2326] [2327] [2328] [2329] Overfull \hbox (24.78088pt too wide) in paragraph at lines 6979--6979 [] \T1/pcr/m/n/10 method = c("logistic", "probit", "loglog", "cloglog", "c auchit"))[] [2330] Underfull \hbox (badness 3138) in paragraph at lines 7057--7063 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2331] Overfull \hbox (9.78043pt too wide) in paragraph at lines 7127--7127 []\T1/pcr/m/n/9 house.plr <- polr(Sat ~ Infl + Type + Cont, weights = Freq, da ta = housing)[] [2332] [2333] Underfull \hbox (badness 1389) in paragraph at lines 7236--7239 []\T1/ptm/m/n/10 the di-men-sion of the space to be used. If this is less than []\T1/pcr/m/n/10 min(p, [2334] [2335] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7366--7366 []\T1/pcr/m/n/9 fm <- lqs(stack.loss ~ ., data = stackloss, method = "S", nsam p = "exact")[] [2336] Overfull \hbox (24.78088pt too wide) in paragraph at lines 7431--7431 [] \T1/pcr/m/n/10 method = c("plug-in", "predictive", "debiased", "looC V"), ...)[] [2337]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.pro file.glm}) has been already used, duplicate ignored \relax l.7513 ... for Profiling glm Objects}{profile.glm} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.profile.glm.1}) has been already used, duplicate ignored \relax l.7513 ... for Profiling glm Objects}{profile.glm} [2338] [2339] [2340] [2341] Underfull \hbox (badness 4686) in paragraph at lines 7808--7810 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2342] [2343] Overfull \hbox (6.78088pt too wide) in paragraph at lines 7927--7927 [] \T1/pcr/m/n/10 maxit = 20, acc = 1e-4, test.vec = "resid", lqs.control = NULL)[] Underfull \hbox (badness 1590) in paragraph at lines 7951--7955 []\T1/ptm/m/n/10 A func-tion to spec-ify the ac-tion to be taken if []\T1/pcr/m /n/10 NA[]\T1/ptm/m/n/10 s are found. The [2344] [2345] [2346] [2347] [2348] [2349] [2350] [2351] [2352] [2353] [2354] [2355] [2356] [2357] [2358] [2359] [2360] [2361] [2362] [2363] Overfull \hbox (12.78088pt too wide) in paragraph at lines 9331--9331 []\T1/pcr/m/n/10 summary(object, method = c("XtX", "XtWX"), correlation = FALS E, ...)[] [2364] Underfull \hbox (badness 2035) in paragraph at lines 9443--9445 []\T1/ptm/m/n/10 ``Fold your arms! Which is on top'' (Fac-tor, with lev-els []\ T1/pcr/m/n/10 "R on L"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "L on R"[]\T1/ptm/m/n /10 , Underfull \hbox (badness 1158) in paragraph at lines 9458--9461 []\T1/ptm/m/n/10 how much the stu-dent smokes. (Fac-tor, lev-els []\T1/pcr/m/n/ 10 "Heavy"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Regul" []\T1/ptm/m/n/10 (reg-u-l arly), [2365] Overfull \hbox (42.78088pt too wide) in paragraph at lines 9540--9540 []\T1/pcr/m/n/10 theta.md(y, mu, dfr, weights, limit = 20, eps = .Machine$doub le.eps^0.25) Overfull \hbox (30.78088pt too wide) in paragraph at lines 9542--9542 []\T1/pcr/m/n/10 theta.ml(y, mu, n, weights, limit = 10, eps = .Machine$double .eps^0.25,[] Overfull \hbox (42.78088pt too wide) in paragraph at lines 9545--9545 []\T1/pcr/m/n/10 theta.mm(y, mu, dfr, weights, limit = 10, eps = .Machine$doub le.eps^0.25)[] [2366] [2367] [2368] [2369] [2370] Underfull \hbox (badness 2951) in paragraph at lines 9905--9907 []\T1/ptm/m/n/10 The orig-i-nal data are avail-able at [][]$\T1/pcr/m/n/10 http s : / / lib . stat . cmu . edu / datasets / 1993 . [2371] [2372] [2373] [2374] [2375] [2376] [2377] [2378]) (./Matrix-pkg.tex Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 35--38 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 35--38 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2379] Underfull \hbox (badness 1769) in paragraph at lines 89--92 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2380] Underfull \hbox (badness 2229) in paragraph at lines 153--156 []\T1/ptm/m/n/10 in gen-eral an ar-bi-trary num-ber of \T1/phv/m/n/10 R \T1/ptm /m/n/10 ob-jects; here, when the first is Underfull \hbox (badness 1147) in paragraph at lines 153--156 \T1/ptm/m/n/10 an []\T1/pcr/m/n/10 "[][]abIndex[][][]" []\T1/ptm/m/n/10 vec-tor , these ar-gu-ments will be con-cate-nated to a new pdfTeX warning (ext4): destination with the same identifier (name{Rfn.all.equal }) has been already used, duplicate ignored \relax l.182 ...{all.equal}{all.equal-methods}{all.equal} Underfull \hbox (badness 10000) in paragraph at lines 209--212 []\T1/ptm/m/n/10 these three meth-ods are sim-ply us-ing Underfull \hbox (badness 10000) in paragraph at lines 215--217 []\T1/ptm/m/n/10 There are more meth-ods, no-tably also for []\T1/pcr/m/n/10 "[ ][]sparseVector[][][]"[]\T1/ptm/m/n/10 's, see [2381] Underfull \hbox (badness 3098) in paragraph at lines 264--266 []\T1/ptm/m/n/10 optional ar-gu-ments passed to the de-fault method for generic func-tion [2382] [2383] Overfull \hbox (15.18042pt too wide) in paragraph at lines 452--452 [] \T1/pcr/m/n/9 band(sm5, -1, 1)# "dsyMatrix": symmetric band preserves sym metry property[] [2384] Underfull \hbox (badness 5119) in paragraph at lines 492--496 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class Underfull \hbox (badness 1668) in paragraph at lines 496--501 [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string, one of []\T1/pcr/ m/n/10 "C"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 , or []\T1/pc r/m/n/10 "R"[]\T1/ptm/m/n/10 , spec-i-fy-ing the sparse Overfull \hbox (4.38043pt too wide) in paragraph at lines 527--527 []\T1/pcr/m/n/9 s1 <- bandSparse(13, k = -c(0:2, 6), diag = c(diags, diags[2]) , symm=TRUE)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 529--529 []\T1/pcr/m/n/9 s2 <- bandSparse(13, k = c(0:2, 6), diag = c(diags, diags[2]) , symm=TRUE)[] [2385] Overfull \hbox (36.7804pt too wide) in paragraph at lines 538--538 []\T1/pcr/m/n/9 lLis <- lapply(list(rpois(20, 2), rpois(20, 1), rpois(20, 3))[ c(1:3, 2:3, 3:2)],[] [2386] Overfull \hbox (52.98038pt too wide) in paragraph at lines 654--654 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 Fast version of Matrix :: .bd iag() -- for the case of *many* (k x k) matrices:[] [2387] Overfull \hbox (96.18033pt too wide) in paragraph at lines 655--655 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 @param lmat list(, , ....., ) where each mat_j is a k x k \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 matrix\TS1/pcr/m/n/9 '[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 656--656 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 @return a sparse (N*k x N*k) matrix of class \code{"\linkS4class{dgCMatrix}"}.[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 669--669 [] \T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 i :\TS1/pcr/m/n/9 ' \ T1/pcr/m/n/9 maybe there\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s a faster way (w/o matri x indexing), but elegant?[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 670--670 [] \T1/pcr/m/n/9 i = as.vector(matrix(0L:(M-1L), nrow=k)[, rep(seq_len( N), each=k)]),[] [2388] Overfull \hbox (9.78043pt too wide) in paragraph at lines 837--837 []\T1/pcr/m/n/9 L. <- L; L.[1:2,1] <- TRUE; L.@x[1:2] <- FALSE; L. # has "zero s" to drop0()[] [2389] Underfull \hbox (badness 1635) in paragraph at lines 919--924 []\T1/pcr/m/n/10 new("pBunchKaufman", ...)[]\T1/ptm/m/n/10 , but they are more typ-i-cally ob-tained as the value of Underfull \hbox (badness 10000) in paragraph at lines 929--932 []\T1/pcr/m/n/10 signature(from = "BunchKaufman", to = "dtrMatrix")[]\T1/ptm/m/ n/10 : re-turns a Underfull \hbox (badness 10000) in paragraph at lines 932--935 []\T1/pcr/m/n/10 signature(from = "pBunchKaufman", to = "dtpMatrix")[]\T1/ptm/m /n/10 : re-turns a Underfull \hbox (badness 10000) in paragraph at lines 935--938 []\T1/pcr/m/n/10 signature(from = "p?BunchKaufman", logarithm = [2390] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1008--1008 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m atrix"), ...)[] [2391] Underfull \hbox (badness 10000) in paragraph at lines 1081--1086 []\T1/ptm/m/n/10 An ob-ject rep-re-sent-ing the fac-tor-iza-tion, in-her-it-ing from vir-tual class [2392] Overfull \hbox (3.02814pt too wide) in paragraph at lines 1137--1137 []\T1/pcr/m/n/9 stopifnot(all.equal(as(A, "matrix"), as(Reduce(\TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 %*%\TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 , e.bk.A), "matrix")))[] [2393]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.cbi nd2.Rdash.methods}) has been already used, duplicate ignored \relax l.1185 ... on cbind2/rbind2}{cbind2.Rdash.methods} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.cbind2}) has been already used, duplic ate ignored \relax l.1186 \aliasA{cbind2}{cbind2-methods}{cbind2} pdfTeX warning (ext4): destinatio n with the same identifier (name{Rfn.rbind2}) has been already used, duplicate ignored \relax l.1195 \aliasA{rbind2}{cbind2-methods}{rbind2} pdfTeX warning (ext4): destinatio n with the same identifier (name{Rfn.rbind2.Rdash.methods}) has been already us ed, duplicate ignored \relax l.1204 ...s}{cbind2-methods}{rbind2.Rdash.methods} [2394] Underfull \hbox (badness 10000) in paragraph at lines 1267--1272 []\T1/ptm/m/n/10 Our class def-i-ni-tion help pages men-tion-ing []\T1/pcr/m/n/ 10 cbind2() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 rbind2() []\T1/ptm/m/n/10 met h-ods: Underfull \hbox (badness 10000) in paragraph at lines 1322--1329 []\T1/ptm/m/n/10 The im-ple-men-ta-tion of class []\T1/pcr/m/n/10 CHMfactor []\ T1/ptm/m/n/10 is based on CHOLMOD's C-level [2395] [2396] Underfull \hbox (badness 5008) in paragraph at lines 1484--1499 []\T1/pcr/m/n/10 signature(from = "CHMfactor", logarithm = "logical")[]\T1/ptm/ m/n/10 : be- [2397] Underfull \hbox (badness 10000) in paragraph at lines 1534--1536 []\T1/pcr/m/n/10 signature(update = ., C = ., object = "CHMfactor")[]\T1/ptm/m/ n/10 : see Underfull \hbox (badness 1917) in paragraph at lines 1542--1546 []\T1/ptm/m/n/10 The CHOLMOD source code; see [][]$\T1/pcr/m/n/10 https : / / g ithub . com / DrTimothyAldenDavis / Underfull \hbox (badness 8132) in paragraph at lines 1542--1546 \T1/pcr/m/n/10 SuiteSparse$[][]\T1/ptm/m/n/10 , no-tably the header file `\T1/p cr/m/n/10 CHOLMOD/Include/cholmod.h\T1/ptm/m/n/10 ' defin-ing [2398] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1592--1592 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m atrix"), ...)[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1600--1600 [] \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list( NULL), dn[2L]),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1609--1609 [] \T1/pcr/m/n/9 ae2(A[ch.A@perm + 1L, ch.A@perm + 1L], with(e.ch.A, L1 %*% D %*% L1.))[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1610--1610 [] \T1/pcr/m/n/9 ae2(A[ch.A@perm + 1L, ch.A@perm + 1L], with(E.ch.A, L %*% L. ))[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1620--1620 []\T1/pcr/m/n/9 u2 <- update(ch.A, t(M), mult = sqrt(2)) # updating with cross prod(M), not M[] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol}) ha s been already used, duplicate ignored \relax l.1625 \aliasA{chol}{chol-methods}{chol} [2399] Underfull \hbox (badness 10000) in paragraph at lines 1730--1734 \T1/pcr/m/n/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 htt ps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and Underfull \hbox (badness 1917) in paragraph at lines 1735--1739 []\T1/ptm/m/n/10 The CHOLMOD source code; see [][]$\T1/pcr/m/n/10 https : / / g ithub . com / DrTimothyAldenDavis / Underfull \hbox (badness 8132) in paragraph at lines 1735--1739 \T1/pcr/m/n/10 SuiteSparse$[][]\T1/ptm/m/n/10 , no-tably the header file `\T1/p cr/m/n/10 CHOLMOD/Include/cholmod.h\T1/ptm/m/n/10 ' defin-ing [2400] [2401]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.chol2inv}) has been already used, duplicate ignored \relax l.1854 ...sA{chol2inv}{chol2inv-methods}{chol2inv} [2402] [2403] Underfull \hbox (badness 1931) in paragraph at lines 1990--1995 []\T1/ptm/m/n/10 a nu-meric vec-tor of length []\T1/pcr/m/n/10 n*n []\T1/ptm/m/ n/10 ([]\T1/pcr/m/n/10 Cholesky[]\T1/ptm/m/n/10 ) or []\T1/pcr/m/n/10 n*(n+1)/2 []\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 pCholesky[]\T1/ptm/m/n/10 ), where Underfull \hbox (badness 1226) in paragraph at lines 2005--2008 []\T1/ptm/m/n/10 Class [][][]\T1/pcr/m/n/10 CholeskyFactorization[][][][]\T1/pt m/m/n/10 , di-rectly. Class [][][]\T1/pcr/m/n/10 MatrixFactorization[][][][]\T1 /ptm/m/n/10 , by class Underfull \hbox (badness 3000) in paragraph at lines 2011--2019 []\T1/ptm/m/n/10 Objects can be gen-er-ated di-rectly by calls of the form []\T 1/pcr/m/n/10 new("Cholesky", ...) []\T1/ptm/m/n/10 or Underfull \hbox (badness 10000) in paragraph at lines 2028--2032 []\T1/pcr/m/n/10 signature(from = "pCholesky", to = "dtpMatrix")[]\T1/ptm/m/n/1 0 : re-turns a Underfull \hbox (badness 10000) in paragraph at lines 2032--2035 []\T1/pcr/m/n/10 signature(from = "p?Cholesky", logarithm = "logical")[]\T1/ptm /m/n/10 : [2404] Underfull \hbox (badness 10000) in paragraph at lines 2066--2070 \T1/pcr/m/n/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 htt ps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and [2405] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2113--2113 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m atrix"), ...)[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 2121--2121 [] \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list( NULL), dn[2L]),[] [2406] Underfull \hbox (badness 10000) in paragraph at lines 2252--2259 []\T1/ptm/m/n/10 a [][]fi-nite[][][] num-ber. The ma-trix that is fac-tor-ized is []\T1/pcr/m/n/10 A + Imult * Underfull \hbox (badness 1946) in paragraph at lines 2252--2259 \T1/pcr/m/n/10 - diag(abs(A))) []\T1/ptm/m/n/10 en-sures that []\T1/pcr/m/n/10 A + Imult * diag(nrow(A)) []\T1/ptm/m/n/10 is di- [2407] Underfull \hbox (badness 10000) in paragraph at lines 2299--2312 []\T1/ptm/m/n/10 An ob-ject rep-re-sent-ing the fac-tor-iza-tion, in-her-it-ing from vir-tual class Underfull \hbox (badness 10000) in paragraph at lines 2315--2319 \T1/pcr/m/n/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 htt ps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and Underfull \hbox (badness 1917) in paragraph at lines 2320--2324 []\T1/ptm/m/n/10 The CHOLMOD source code; see [][]$\T1/pcr/m/n/10 https : / / g ithub . com / DrTimothyAldenDavis / Underfull \hbox (badness 8132) in paragraph at lines 2320--2324 \T1/pcr/m/n/10 SuiteSparse$[][]\T1/ptm/m/n/10 , no-tably the header file `\T1/p cr/m/n/10 CHOLMOD/Include/cholmod.h\T1/ptm/m/n/10 ' defin-ing [2408] [2409] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2437--2437 [] \T1/pcr/m/n/9 list(simpl1 = Cholesky(A4, perm = TRUE, super = FALSE, L DL = TRUE),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2438--2438 [] \T1/pcr/m/n/9 simpl0 = Cholesky(A4, perm = TRUE, super = FALSE, L DL = FALSE),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2439--2439 [] \T1/pcr/m/n/9 super0 = Cholesky(A4, perm = TRUE, super = TRUE )),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2441--2441 [] \T1/pcr/m/n/9 list(simpl1 = Cholesky(A4, perm = FALSE, super = FALSE, L DL = TRUE),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2442--2442 [] \T1/pcr/m/n/9 simpl0 = Cholesky(A4, perm = FALSE, super = FALSE, L DL = FALSE),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 2443--2443 [] \T1/pcr/m/n/9 super0 = Cholesky(A4, perm = FALSE, super = TRUE )))[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 2447--2447 []\T1/pcr/m/n/9 rapply2 <- function(object, f, ...) rapply(object, f, , , how = "list", ...)[] Underfull \vbox (badness 10000) has occurred while \output is active [2410] Overfull \hbox (42.18039pt too wide) in paragraph at lines 2514--2514 [] \T1/pcr/m/n/9 x = c(1, 6, 38, 10, 60, 103, -4, 6, -32, -247, -2, - 16, -128, -2, -67))[] Underfull \vbox (badness 10000) has occurred while \output is active [2411] Overfull \hbox (20.58041pt too wide) in paragraph at lines 2610--2610 [] \T1/pcr/m/n/9 show(a1 <- sparseMatrix(i= c(1:4), j=c(2:4,1), x = 2, dimnames=dns))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 2614--2614 [] \T1/pcr/m/n/9 show(a2 <- sparseMatrix(i= c(1:4,4), j=c(2:4,1:2), x = TRUE, dimnames=dns))[] [2412] Overfull \hbox (15.18042pt too wide) in paragraph at lines 2621--2621 [] \T1/pcr/m/n/9 a. <- sparseMatrix(i=4:1, j=1:4, dimnames=list(n4, n4), repr ="T") # no \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 x\TS1/pcr/m/n/9 '[] [2413]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col Means}) has been already used, duplicate ignored \relax l.2696 ...asA{colMeans}{colSums-methods}{colMeans} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colSums}) has been already used, dupli cate ignored \relax l.2704 \aliasA{colSums}{colSums-methods}{colSums} pdfTeX warning (ext4): destina tion with the same identifier (name{Rfn.rowMeans}) has been already used, dupli cate ignored \relax l.2711 ...asA{rowMeans}{colSums-methods}{rowMeans} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.rowSums}) has been already used, dupli cate ignored \relax l.2719 \aliasA{rowSums}{colSums-methods}{rowSums} Underfull \hbox (badness 2922) in paragraph at lines 2771--2775 []\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sparse, i.e., i n-her-it-ing from Underfull \hbox (badness 1728) in paragraph at lines 2771--2775 \T1/ptm/m/n/10 class [][][]\T1/pcr/m/n/10 sparseVector[][][][]\T1/ptm/m/n/10 . Only ap-pli-ca-ble when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 is in-her-it-ing fr om a Underfull \hbox (badness 1237) in paragraph at lines 2782--2785 [][][]\T1/pcr/m/n/10 dimnames[][][](x) []\T1/ptm/m/n/10 are only kept (as [][][ ]\T1/pcr/m/n/10 names[][][](v)[]\T1/ptm/m/n/10 ) when the re-sult-ing []\T1/pcr /m/n/10 v []\T1/ptm/m/n/10 is [][][]\T1/pcr/m/n/10 numeric[][][][]\T1/ptm/m/n/1 0 , since [2414] [2415] Underfull \hbox (badness 3547) in paragraph at lines 2888--2891 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2416] [2417] [2418] [2419] [2420] Underfull \hbox (badness 10000) in paragraph at lines 3290--3293 []\T1/pcr/m/n/10 signature(from = "denseLU", logarithm = "logical")[]\T1/ptm/m/ n/10 : com- [2421] Overfull \hbox (9.78043pt too wide) in paragraph at lines 3345--3345 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m atrix"), ...)[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 3352--3352 [] \T1/pcr/m/n/9 new( "pMatrix", Dim = c(n, n), Dimnames = c(dn[ 1L], list(NULL)),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3355--3355 [] \T1/pcr/m/n/9 new("dtrMatrix", Dim = c(n, n), Dimnames = list( NULL, NULL),[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 3358--3358 [] \T1/pcr/m/n/9 new("dtrMatrix", Dim = c(n, n), Dimnames = c(lis t(NULL), dn[2L]),[] [2422] Underfull \hbox (badness 7379) in paragraph at lines 3486--3488 []\T1/pcr/m/n/10 signature(x = "dgCMatrix")[]\T1/ptm/m/n/10 : com-putes the LU de-com-po-si-tion of a square [2423] [2424] [2425] Underfull \hbox (badness 4846) in paragraph at lines 3707--3711 []\T1/ptm/m/n/10 Note that both []\T1/pcr/m/n/10 new(.) []\T1/ptm/m/n/10 and [] [][]\T1/pcr/m/n/10 spMatrix[][][] []\T1/ptm/m/n/10 con-struc-tors for []\T1/pcr /m/n/10 "dgTMatrix" []\T1/ptm/m/n/10 (and other Underfull \hbox (badness 2717) in paragraph at lines 3712--3716 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in more than one pos-si-ble [2426] Underfull \hbox (badness 5231) in paragraph at lines 3757--3762 []\T1/ptm/m/n/10 Construct a for-mally di-ag-o-nal [][][]\T1/pcr/m/n/10 Matrix[ ][][][]\T1/ptm/m/n/10 , i.e., an ob-ject in-her-it-ing from vir-tual class Overfull \hbox (84.78088pt too wide) in paragraph at lines 3768--3768 []\T1/pcr/m/n/10 .sparseDiagonal(n, x = NULL, uplo = "U", shape = "t", unitri = TRUE, kind, cols)[] [2427] Underfull \hbox (badness 10000) in paragraph at lines 3824--3827 []\T1/pcr/m/n/10 .trDiagonal() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 .symDiagon al() []\T1/ptm/m/n/10 are sim-ple wrap-pers, for Underfull \hbox (badness 6792) in paragraph at lines 3824--3827 []\T1/pcr/m/n/10 .sparseDiagonal(shape = "t") []\T1/ptm/m/n/10 and []\T1/pcr/m/ n/10 .sparseDiagonal(shape = "s")[]\T1/ptm/m/n/10 , re-spec- [2428] Underfull \hbox (badness 3646) in paragraph at lines 3901--3904 []\T1/ptm/m/n/10 the [][][]\T1/pcr/m/n/10 dimnames[][][][]\T1/ptm/m/n/10 , a [] [][]\T1/pcr/m/n/10 list[][][][]\T1/ptm/m/n/10 , see the [][][]\T1/pcr/m/n/10 Ma trix[][][] []\T1/ptm/m/n/10 class de-scrip-tion. Typ-i-cally Underfull \hbox (badness 6542) in paragraph at lines 3936--3940 []\T1/pcr/m/n/10 signature(x = "diagonalMatrix")[]\T1/ptm/m/n/10 : all these gr oup meth-ods re-turn a Underfull \hbox (badness 4518) in paragraph at lines 3945--3951 []\T1/pcr/m/n/10 signature(e1 = "ddiMatrix", e2="denseMatrix")[]\T1/ptm/m/n/10 : the re-sult is from class [2429] Underfull \hbox (badness 10000) in paragraph at lines 3952--3956 []\T1/pcr/m/n/10 (object = "diagonalMatrix")[]\T1/ptm/m/n/10 : Re-turns an ob-j ect of S3 class Underfull \hbox (badness 2318) in paragraph at lines 3962--3966 [][][]\T1/pcr/m/n/10 Diagonal[][][]() []\T1/ptm/m/n/10 as con-struc-tor of thes e ma-tri-ces, and [][][]\T1/pcr/m/n/10 isDiagonal[][][][]\T1/ptm/m/n/10 . [][][ ]\T1/pcr/m/n/10 ddiMatrix[][][] []\T1/ptm/m/n/10 and [2430] [2431] [2432] Underfull \hbox (badness 10000) in paragraph at lines 4219--4221 []\T1/pcr/m/n/10 signature(x = "dMatrix", digits = "numeric")[]\T1/ptm/m/n/10 : this group con-tains [2433] [2434] Overfull \hbox (69.18036pt too wide) in paragraph at lines 4360--4360 []\T1/pcr/m/n/9 stopifnot(all.equal(S9p0, S9p))# same as as default, but diffe rent from the random one[] [2435] Underfull \hbox (badness 2469) in paragraph at lines 4474--4477 []\T1/pcr/m/n/10 signature(x = "dpoMatrix")[]\T1/ptm/m/n/10 : Re-turns the [][] []\T1/pcr/m/n/10 determinant[][][] []\T1/ptm/m/n/10 of []\T1/pcr/m/n/10 x[]\T1/ ptm/m/n/10 , via [2436] Underfull \hbox (badness 10000) in paragraph at lines 4497--4502 []\T1/ptm/m/n/10 Currently the va-lid-ity meth-ods for these classes such as Underfull \hbox (badness 2020) in paragraph at lines 4497--4502 [][][]\T1/pcr/m/n/10 getValidity[][][](getClass("dpoMatrix")) []\T1/ptm/m/n/10 for ef-fi-ciency rea-sons only check the di- Underfull \hbox (badness 1748) in paragraph at lines 4503--4512 \T1/pcr/m/n/10 error=identity), "error") []\T1/ptm/m/n/10 . In-deed, when \T1/p tm/m/it/10 co-erc-ing \T1/ptm/m/n/10 to these classes, a ver-sion Underfull \hbox (badness 1590) in paragraph at lines 4503--4512 \T1/ptm/m/n/10 of [][][]\T1/pcr/m/n/10 Cholesky[][][]() []\T1/ptm/m/n/10 or [][ ][]\T1/pcr/m/n/10 chol[][][]() []\T1/ptm/m/n/10 is typ-i-cally used, e.g., see []\T1/pcr/m/n/10 selectMethod("coerce", Underfull \hbox (badness 6675) in paragraph at lines 4559--4566 []\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 Matrix[][][][]\T1/ptm/m/n/10 , typ-i-ca lly in-her-it-ing from vir-tual class [][][]\T1/pcr/m/n/10 sparseMatrix[][][][] \T1/ptm/m/n/10 . Underfull \hbox (badness 6493) in paragraph at lines 4559--4566 [][][]\T1/pcr/m/n/10 denseMatrix[][][] []\T1/ptm/m/n/10 and tra-di-tional vec-t ors and ma-tri-ces are co-erced to [2437] Underfull \hbox (badness 10000) in paragraph at lines 4574--4582 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing if the re-sult must in-herit from vi r-tual class Underfull \hbox (badness 1365) in paragraph at lines 4574--4582 [][][]\T1/pcr/m/n/10 CsparseMatrix[][][][]\T1/ptm/m/n/10 . If []\T1/pcr/m/n/10 FALSE []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 in-her-its from [][][]\T1/pcr/m/n/10 RsparseMatrix[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4597--4600 []\T1/ptm/m/n/10 Function [][][]\T1/pcr/m/n/10 sparseMatrix[][][][]\T1/ptm/m/n/ 10 , for con-struct-ing ob-jects in-her-it-ing from vir-tual class [2438] Underfull \hbox (badness 10000) in paragraph at lines 4641--4645 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form []\T1/pcr/m/n/10 new("dsCMatrix", ...) []\T1/ptm/m/n/10 or Underfull \hbox (badness 2103) in paragraph at lines 4641--4645 []\T1/pcr/m/n/10 new("dsTMatrix", ...)[]\T1/ptm/m/n/10 , or au-to-mat-i-cally v ia e.g., []\T1/pcr/m/n/10 as(*, "symmetricMatrix")[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1571) in paragraph at lines 4691--4694 []\T1/pcr/m/n/10 signature(x = "dsCMatrix", pivot = "logical")[]\T1/ptm/m/n/10 : Re-turns (and stores) the [2439] [2440] Underfull \hbox (badness 1221) in paragraph at lines 4834--4837 []\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "dMatrix"[]\T1/ptm/m/n/10 , by class [] \T1/pcr/m/n/10 "dsparseMatrix"[]\T1/ptm/m/n/10 ; class []\T1/pcr/m/n/10 "sparse Matrix"[]\T1/ptm/m/n/10 , by classes Underfull \hbox (badness 1400) in paragraph at lines 4844--4847 []\T1/pcr/m/n/10 signature(x = "dsRMatrix", uplo = "character")[]\T1/ptm/m/n/10 : if []\T1/pcr/m/n/10 uplo == [2441] Underfull \hbox (badness 10000) in paragraph at lines 4896--4898 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form []\T1/pcr/m/n/10 new("dsyMatrix", ...) []\T1/ptm/m/n/10 or Underfull \hbox (badness 1365) in paragraph at lines 4932--4935 []\T1/pcr/m/n/10 signature(x = "dspMatrix", type = "character")[]\T1/ptm/m/n/10 , or []\T1/pcr/m/n/10 x = "dsyMatrix" [2442] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4978--4978 []\T1/pcr/m/n/9 stopifnot(all(S1 == S2)) # equal "seen as matrix", but differ internally :[] [2443] [2444] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5084--5084 []\T1/pcr/m/n/9 U5 <- new("dtCMatrix", i= c(1L, 0:3), p=c(0L,0L,0:2, 5L), Dim = c(5L, 5L),[] Underfull \hbox (badness 3635) in paragraph at lines 5139--5143 []\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ddenseMatrix"[]\T1/ptm/m/n/10 , di-rec tly. Class []\T1/pcr/m/n/10 "triangularMatrix"[]\T1/ptm/m/n/10 , di-rectly. Cla ss Underfull \hbox (badness 10000) in paragraph at lines 5148--5151 []\T1/pcr/m/n/10 signature(x = "dtpMatrix", y = "dgeMatrix")[]\T1/ptm/m/n/10 : Ma-trix mul-ti-pli-ca-tion; Underfull \hbox (badness 10000) in paragraph at lines 5151--5155 []\T1/pcr/m/n/10 signature(x = "dtpMatrix", logarithm = "logical")[]\T1/ptm/m/n /10 : the [2445] [2446] [2447] [2448] Underfull \hbox (badness 10000) in paragraph at lines 5399--5401 []\T1/ptm/m/n/10 a ma-trix fac-tor-iza-tion, typ-i-cally in-her-it-ing from vir -tual class Overfull \hbox (29.27832pt too wide) in paragraph at lines 5418--5418 [] \T1/pcr/m/n/10 all.equal(as(x, "matrix"), as(Reduce(\TS1/cmtt/m/n/10 `\T 1/pcr/m/n/10 %*%\TS1/cmtt/m/n/10 `\T1/pcr/m/n/10 , expand2(y)), "matrix")) Overfull \hbox (37.71342pt too wide) in alignment at lines 5449--5449 [] [] [2449] Underfull \hbox (badness 7064) in paragraph at lines 5477--5494 []\T1/pcr/m/n/10 signature(x = "p?BunchKaufman")[]\T1/ptm/m/n/10 : ex-pands the fac-tor-iza-tion $\OML/cmm/m/it/10 A \OT1/cmr/m/n/10 = Underfull \hbox (badness 3000) in paragraph at lines 5506--5513 []\T1/pcr/m/n/10 signature(x = "denseLU")[]\T1/ptm/m/n/10 : ex-pands the fac-to r-iza-tion $\OML/cmm/m/it/10 A \OT1/cmr/m/n/10 = \OML/cmm/m/it/10 P[]LU$ \T1/pt m/m/n/10 as Underfull \hbox (badness 2735) in paragraph at lines 5522--5529 []\T1/pcr/m/n/10 signature(x = "CHMfactor")[]\T1/ptm/m/n/10 : as []\T1/pcr/m/n/ 10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/pcr/m/n/10 list(P, L)[]\T1/p tm/m/n/10 . Underfull \hbox (badness 1337) in paragraph at lines 5529--5544 []\T1/pcr/m/n/10 signature(x = "sparseLU")[]\T1/ptm/m/n/10 : as []\T1/pcr/m/n/1 0 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/pcr/m/n/10 list(P, L, U, Underfull \hbox (badness 2680) in paragraph at lines 5529--5544 \T1/pcr/m/n/10 Q)[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 expand(x)[["Q"]] []\T1/ptm /m/n/10 and []\T1/pcr/m/n/10 expand2(x)[["P2."]] []\T1/ptm/m/n/10 rep-re-sent t he same per- Underfull \hbox (badness 5374) in paragraph at lines 5529--5544 \T1/ptm/m/n/10 mu-ta-tion ma-trix $\OML/cmm/m/it/10 P[]$ \T1/ptm/m/n/10 but hav e op-po-site []\T1/pcr/m/n/10 margin []\T1/ptm/m/n/10 slots and in-verted []\T1 /pcr/m/n/10 perm []\T1/ptm/m/n/10 slots. Underfull \hbox (badness 2073) in paragraph at lines 5544--5549 []\T1/pcr/m/n/10 signature(x = "denseLU")[]\T1/ptm/m/n/10 : as []\T1/pcr/m/n/10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/pcr/m/n/10 list(L, U, P)[]\T1/ ptm/m/n/10 . [2450] [2451] [2452] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5752--5752 []\T1/pcr/m/n/9 str(pores <- readMM(system.file("external/pores_1.mtx", packag e = "Matrix")))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5753--5753 []\T1/pcr/m/n/9 str(utm <- readHB(system.file("external/utm300.rua" , packag e = "Matrix")))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5754--5754 []\T1/pcr/m/n/9 str(lundA <- readMM(system.file("external/lund_a.mtx" , packag e = "Matrix")))[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5755--5755 []\T1/pcr/m/n/9 str(lundA <- readHB(system.file("external/lund_a.rsa" , packag e = "Matrix")))[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 5756--5756 []\T1/pcr/m/n/9 ## https://math.nist.gov/MatrixMarket/data/Harwell-Boeing/coun terx/counterx.htm[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5757--5757 []\T1/pcr/m/n/9 str(jgl <- readMM(system.file("external/jgl009.mtx" , packag e = "Matrix")))[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 5763--5763 []\T1/pcr/m/n/9 u. <- url("https://www.cise.ufl.edu/research/sparse/RB/Boeing/ msc00726.tar.gz")[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5768--5768 []\T1/pcr/m/n/9 ## Store as MatrixMarket (".mtx") file, here inside temporary dir./folder:[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 5771--5771 []\T1/pcr/m/n/9 file.info(MMfile)[,c("size", "ctime")] # (some confirmation of the file\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s)[] [2453] Overfull \hbox (58.38037pt too wide) in paragraph at lines 5781--5781 []\T1/pcr/m/n/9 ## has columns (i, j, x) -> we can use via do.call() as argume nts to sparseMatrix():[] [2454] Overfull \hbox (25.98041pt too wide) in paragraph at lines 5843--5843 [] \T1/pcr/m/n/9 all.equal(facmul(x, nm, y, trans = TRUE, left = TRUE), crossprod(L, y))[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 5844--5844 [] \T1/pcr/m/n/9 all.equal(facmul(x, nm, y, trans = TRUE, left = FALSE), t crossprod(y, L))[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 5923--5923 []\T1/pcr/m/n/10 .diag2dense(from, kind = ".", shape = "t", packed = FALSE, up lo = "U")[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 5925--5925 []\T1/pcr/m/n/10 .m2dense(from, class = ".ge", uplo = "U", diag = "N", trans = FALSE)[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 5928--5928 []\T1/pcr/m/n/10 .diag2sparse(from, kind = ".", shape = "t", repr = "C", uplo = "U")[] [2455] Overfull \hbox (18.78088pt too wide) in paragraph at lines 5930--5930 []\T1/pcr/m/n/10 .m2sparse(from, class = ".gC", uplo = "U", diag = "N", trans = FALSE)[] Underfull \hbox (badness 10000) in paragraph at lines 6000--6002 []\T1/ptm/m/n/10 a string in []\T1/pcr/m/n/10 c("trace", "sumLog", "prod", "min ", "max", [2456] Underfull \hbox (badness 10000) in paragraph at lines 6073--6079 [][]\T1/pcr/m/n/10 .solve.dgC.*(a, b)[]\T1/ptm/b/n/10 : []\T1/pcr/m/n/10 .solv e.dgC.lu(a, b) []\T1/ptm/m/n/10 needs a square ma-trix []\T1/pcr/m/n/10 a[]\T1/ ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 6073--6079 []\T1/pcr/m/n/10 .solve.dgC.qr(a, b) []\T1/ptm/m/n/10 needs a ``long'' ma-trix []\T1/pcr/m/n/10 a[]\T1/ptm/m/n/10 , with []\T1/pcr/m/n/10 nrow(a) >= ncol(a)[] \T1/ptm/m/n/10 . [2457] Underfull \hbox (badness 10000) in paragraph at lines 6087--6096 [][]\T1/pcr/m/n/10 .updateCHMfactor(object, parent, mult)[]\T1/ptm/b/n/10 : [] \T1/pcr/m/n/10 .updateCHMfactor []\T1/ptm/m/n/10 up- Underfull \hbox (badness 10000) in paragraph at lines 6087--6096 \T1/ptm/m/n/10 dates []\T1/pcr/m/n/10 object []\T1/ptm/m/n/10 with the re-sult of Cholesky fac-tor-iz-ing []\T1/pcr/m/n/10 F(parent) + mult[1] * Underfull \hbox (badness 2443) in paragraph at lines 6087--6096 \T1/pcr/m/n/10 diag(nrow(parent))[]\T1/ptm/m/n/10 , i.e., []\T1/pcr/m/n/10 F(pa rent) []\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 mult[1] []\T1/ptm/m/n/10 times the iden-tity ma-trix, [2458] [2459] [2460] [2461]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.image}) has been already used, duplicate ignored \relax l.6399 \aliasA{image}{image-methods}{image} [2462] [2463] Underfull \hbox (badness 4120) in paragraph at lines 6495--6498 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ][]\T1/pcr/m/n/10 dgTMatrix[][][] []\T1/ptm/m/n/10 class. Use Overfull \hbox (47.58038pt too wide) in paragraph at lines 6514--6514 []\T1/pcr/m/n/9 stopifnot(!is.null(leg <- imgC$legend), is.list(leg$right)) # failed for 2 days ..[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6534--6534 []\T1/pcr/m/n/9 ## Using (xlim,ylim) has advantage : matrix dimension and (col /row) indices:[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 6540--6540 [] \T1/pcr/m/n/9 I2 <- image(USCounties, c(1,100), c(1,100), useAbs=FALSE, border.col=NA)[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 6541--6541 [] \T1/pcr/m/n/9 I3 <- image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd =2, border.col=NA)[] Overfull \hbox (144.78027pt too wide) in paragraph at lines 6545--6545 []\T1/pcr/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor der.col = adjustcolor("skyblue", 1/2))[] [2464] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6553--6553 []\T1/pcr/m/n/9 image(USCounties, useRaster = TRUE) # should not suffer from a nti-aliasing[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 6556--6556 [] \T1/pcr/m/n/9 ## and now look at the *.png image in a viewer you can easi ly zoom in and out[] [2465] Underfull \hbox (badness 10000) in paragraph at lines 6684--6687 []\T1/pcr/m/n/10 signature(x = "indMatrix", y = "Matrix") []\T1/ptm/m/n/10 and oth-ers listed by Underfull \hbox (badness 1286) in paragraph at lines 6684--6687 []\T1/pcr/m/n/10 showMethods("%*%", classes = "indMatrix")[]\T1/ptm/m/n/10 : ma -trix prod-ucts im-ple-mented Underfull \hbox (badness 10000) in paragraph at lines 6687--6690 []\T1/pcr/m/n/10 signature(from = "numeric", to = "indMatrix")[]\T1/ptm/m/n/10 : sup-port-ing typ-i-cal Underfull \hbox (badness 3375) in paragraph at lines 6690--6695 []\T1/pcr/m/n/10 signature(from = "list", to = "indMatrix")[]\T1/ptm/m/n/10 : s up-port-ing []\T1/pcr/m/n/10 indMatrix Underfull \hbox (badness 4156) in paragraph at lines 6701--6703 []\T1/pcr/m/n/10 signature(x = "indMatrix")[]\T1/ptm/m/n/10 : row and Underfull \hbox (badness 1337) in paragraph at lines 6707--6711 []\T1/pcr/m/n/10 signature(X = "indMatrix", Y = "indMatrix")[]\T1/ptm/m/n/10 : Kro-necker prod-uct of [2466] Underfull \hbox (badness 1776) in paragraph at lines 6717--6726 []\T1/ptm/m/n/10 Fabian Scheipl at `\T1/pcr/m/n/10 uni-muenchen.de\T1/ptm/m/n/1 0 ', build-ing on the ex-ist-ing class [][][]\T1/pcr/m/n/10 pMatrix[][][] []\T1 /ptm/m/n/10 af-ter Underfull \hbox (badness 1253) in paragraph at lines 6717--6726 \T1/ptm/m/n/10 a nice hike's con-ver-sa-tion with Mar-tin Maech-ler. Meth-ods f or [][][]\T1/pcr/m/n/10 crossprod[][][](x, y) []\T1/ptm/m/n/10 and [2467] Underfull \hbox (badness 1509) in paragraph at lines 6810--6812 []\T1/ptm/m/n/10 an in-te-ger off-set, in-di-cat-ing that the re-sult should be a per-mu-ta-tion of Underfull \hbox (badness 10000) in paragraph at lines 6837--6841 []\T1/pcr/m/n/10 invertPerm(p) []\T1/ptm/m/n/10 re-turns an in-te-ger vec-tor o f length []\T1/pcr/m/n/10 length(p) []\T1/ptm/m/n/10 such that Underfull \hbox (badness 4441) in paragraph at lines 6837--6841 []\T1/pcr/m/n/10 p[invertPerm(p)] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 invertP erm(p)[p] []\T1/ptm/m/n/10 are both []\T1/pcr/m/n/10 seq_along(p)[]\T1/ptm/m/n/ 10 , i.e., the [2468] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6874--6874 []\T1/pcr/m/n/9 ## Product of transpositions (1 2)(2 1)(4 3)(6 8)(10 1) = (3 4 )(6 8)(1 10)[] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.anyNA}) h as been already used, duplicate ignored \relax l.6888 \aliasA{anyNA}{is.na-methods}{anyNA} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.is.finite}) has been already used, duplicate ignored \relax l.6895 ...asA{is.finite}{is.na-methods}{is.finite} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.is.infinite}) has been already used, d uplicate ignored \relax l.6903 ...is.infinite}{is.na-methods}{is.infinite} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.is.na}) has been already used, duplica te ignored \relax l.6911 \aliasA{is.na}{is.na-methods}{is.na} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.is.nan}) has been already used, duplicate ign ored \relax l.6918 \aliasA{is.nan}{is.na-methods}{is.nan} [2469] [2470]pdfTeX warning (ext4 ): destination with the same identifier (name{Rfn.isSymmetric}) has been alread y used, duplicate ignored \relax l.7077 ...etric}{isSymmetric-methods}{isSymmetric} [2471] Overfull \hbox (138.78088pt too wide) in paragraph at lines 7124--7124 []\T1/pcr/m/n/10 isSymmetric(object, checkDN = TRUE, tol = 100 * .Machine$doub le.eps, tol1 = 8 * tol, ...)[] Overfull \hbox (42.78088pt too wide) in paragraph at lines 7126--7126 []\T1/pcr/m/n/10 isSymmetric(object, checkDN = TRUE, tol = 100 * .Machine$doub le.eps, ...)[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 7181--7181 []\T1/pcr/m/n/9 isSymmetric(as(M, "generalMatrix")) # still symmetric, even if not "formally"[] [2472] Overfull \hbox (25.98041pt too wide) in paragraph at lines 7185--7185 []\T1/pcr/m/n/9 showMethods("isSymmetric", includeDefs = TRUE) # includes S3 g eneric from base[] [2473] Overfull \hbox (31.3804pt too wide) in paragraph at lines 7268--7268 []\T1/pcr/m/n/9 isTriangular(as(M, "generalMatrix")) # still triangular, even if not "formally"[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 7295--7295 []\T1/pcr/m/n/10 KhatriRao(X, Y = X, FUN = "*", sparseY = TRUE, make.dimnames = FALSE) [2474] Overfull \hbox (15.18042pt too wide) in paragraph at lines 7371--7371 []\T1/pcr/m/n/9 stopifnot(all(K1 <- KhatriRao(nd, zm) == 0), identical(dim(K1) , c(12L, 4L)),[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 7372--7372 [] \T1/pcr/m/n/9 all(K2 <- KhatriRao(zm, nd) == 0), identical(dim(K2) , c(12L, 4L)))[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 7379--7379 [] \T1/pcr/m/n/9 identical(dimnames(KhatriRao(m, d0, make.dimnames=TRUE)), di mnames(Kmd)))[] [2475]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.kro necker}) has been already used, duplicate ignored \relax l.7453 ...kronecker}{kronecker-methods}{kronecker} [2476] Underfull \hbox (badness 1062) in paragraph at lines 7552--7555 []\T1/pcr/m/n/10 ldenseMatrix []\T1/ptm/m/n/10 is the vir-tual class of all den se \T1/ptm/b/n/10 l\T1/ptm/m/n/10 ogical (S4) ma-tri-ces. It ex-tends both [2477] Underfull \hbox (badness 6063) in paragraph at lines 7578--7581 []\T1/pcr/m/n/10 signature(x = "ndenseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2478pdfTeX warning (ext4): destination with the same identifier (name{Rfn.*,nd iMatrix,Matrix.Rdash.method}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box l.7707 crossprod(nM) # pattern sparse ] Underfull \hbox (badness 2635) in paragraph at lines 7738--7743 []\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ldenseMatrix"[]\T1/ptm/m/n/10 , di-rec tly. Class []\T1/pcr/m/n/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/ 10 "ldenseMatrix"[]\T1/ptm/m/n/10 . Underfull \hbox (badness 4229) in paragraph at lines 7738--7743 \T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "denseMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/10 "ldenseMatrix"[]\T1/ptm/m/n/10 . Class []\T1/pcr/m/n/10 "Matri x"[]\T1/ptm/m/n/10 , by class Underfull \hbox (badness 10000) in paragraph at lines 7746--7749 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n /10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/ 10 ); use, e.g., [2479] Underfull \hbox (badness 10000) in paragraph at lines 7804--7814 []\T1/pcr/m/n/10 lsTMatrix[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 ltTMatrix[]\T 1/ptm/m/n/10 ) or in com-pressed column-oriented form (class Underfull \hbox (badness 1242) in paragraph at lines 7804--7814 [][][]\T1/pcr/m/n/10 CsparseMatrix[][][][]\T1/ptm/m/n/10 , sub-classes []\T1/pc r/m/n/10 lgCMatrix[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lsCMatrix[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 ltCMatrix[]\T1/ptm/m/n/10 ) or--\T1/ptm/m/it/10 rarely\ T1/ptm/m/n/10 --in [2480] Underfull \hbox (badness 3179) in paragraph at lines 7886--7889 []\T1/pcr/m/n/10 signature(x = "lsparseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cal ly equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2481] Underfull \hbox (badness 10000) in paragraph at lines 7971--7974 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n /10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/ 10 ; use, e.g., [2482] Underfull \hbox (badness 10000) in paragraph at lines 8032--8035 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n /10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/ 10 ; use, e.g., [2483] [2484] [2485] Underfull \hbox (badness 10000) in paragraph at lines 8270--8273 []\T1/ptm/m/n/10 vector of all non-zero en-tries of []\T1/pcr/m/n/10 x[]\T1/ptm /m/n/10 ; ex-ists \T1/ptm/b/n/10 only \T1/ptm/m/n/10 when []\T1/pcr/m/n/10 as(x , Underfull \hbox (badness 1490) in paragraph at lines 8292--8294 []\T1/pcr/m/n/10 mat2triplet() []\T1/ptm/m/n/10 is con-cep-tu-ally the \T1/ptm/ m/it/10 in-verse \T1/ptm/m/n/10 func-tion of [][][]\T1/pcr/m/n/10 spMatrix[][][ ] []\T1/ptm/m/n/10 and (one case of) [2486]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp cent.*.Rpcent.}) has been already used, duplicate ignored \relax l.8313 ...*\%}{matmult-methods}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.crossprod}) has been already used, dup licate ignored \relax l.8387 ...A{crossprod}{matmult-methods}{crossprod} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du plicate ignored \relax l.8463 ...tcrossprod}{matmult-methods}{tcrossprod} Underfull \hbox (badness 1881) in paragraph at lines 8549--8555 \T1/ptm/m/n/10 ally im-ple-mented ef-fi-ciently with-out com-put-ing [][][]\T1/ pcr/m/n/10 t[][][](.)[]\T1/ptm/m/n/10 's un-nec-es-sar-ily. They also re-turn [2487] Underfull \hbox (badness 10000) in paragraph at lines 8618--8621 []\T1/pcr/m/n/10 signature(x = "dgeMatrix", y = "dgeMatrix")[]\T1/ptm/m/n/10 : Ma-trix mul-ti-pli-ca-tion; Underfull \hbox (badness 10000) in paragraph at lines 8621--8626 []\T1/pcr/m/n/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and other sig-na-tures (use Underfull \hbox (badness 3557) in paragraph at lines 8621--8626 []\T1/pcr/m/n/10 showMethods("%*%", class="dtrMatrix")[]\T1/ptm/m/n/10 ): ma-tr ix mul-ti-pli-ca-tion. Mul-ti- Underfull \hbox (badness 6608) in paragraph at lines 8626--8630 \T1/ptm/m/n/10 sig-na-tures, use []\T1/pcr/m/n/10 showMethods("crossprod", clas s = "dgeMatrix")[]\T1/ptm/m/n/10 , ma-trix Underfull \hbox (badness 1552) in paragraph at lines 8636--8637 []\T1/pcr/m/n/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and other sig-na- [2488] [2489] [2490]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det}) has been already used, duplicate ignored \relax l.8859 \aliasA{det}{Matrix-class}{det} Underfull \hbox (badness 1337) in paragraph at lines 8933--8936 []\T1/pcr/m/n/10 signature(x = "Matrix", value = "list")[]\T1/ptm/m/n/10 : set the []\T1/pcr/m/n/10 dimnames []\T1/ptm/m/n/10 to a Underfull \hbox (badness 10000) in paragraph at lines 8949--8952 Underfull \hbox (badness 10000) in paragraph at lines 8958--8960 []\T1/pcr/m/n/10 signature(from = "ANY", to = "Matrix")[]\T1/ptm/m/n/10 : This re-lies on a cor-rect [2491] [2492] [2493] Underfull \hbox (badness 10000) in paragraph at lines 9128--9132 []\T1/pcr/m/n/10 CholeskyFactorization[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Bunch KaufmanFactorization[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9151--9153 []\T1/pcr/m/n/10 signature(x = "MatrixFactorization", logarithm = Underfull \hbox (badness 10000) in paragraph at lines 9168--9171 []\T1/pcr/m/n/10 signature(obj = "MatrixFactorization")[]\T1/ptm/m/n/10 : re-tu rns []\T1/pcr/m/n/10 obj []\T1/ptm/m/n/10 with Underfull \hbox (badness 3019) in paragraph at lines 9177--9180 []\T1/ptm/m/n/10 Classes ex-tend-ing []\T1/pcr/m/n/10 CholeskyFactorization[]\T 1/ptm/m/n/10 , namely [][][]\T1/pcr/m/n/10 Cholesky[][][][]\T1/ptm/m/n/10 , [][ ][]\T1/pcr/m/n/10 pCholesky[][][][]\T1/ptm/m/n/10 , and [2494] Underfull \hbox (badness 10000) in paragraph at lines 9181--9183 []\T1/ptm/m/n/10 Classes ex-tend-ing []\T1/pcr/m/n/10 BunchKaufmanFactorization []\T1/ptm/m/n/10 , namely [][][]\T1/pcr/m/n/10 BunchKaufman[][][] []\T1/ptm/m/n /10 and Underfull \hbox (badness 10000) in paragraph at lines 9196--9199 []\T1/ptm/m/n/10 Generic func-tions [][][]\T1/pcr/m/n/10 expand1[][][] []\T1/pt m/m/n/10 and [][][]\T1/pcr/m/n/10 expand2[][][] []\T1/ptm/m/n/10 for con-struct -ing ma-trix fac-tors from Underfull \hbox (badness 1062) in paragraph at lines 9225--9228 []\T1/pcr/m/n/10 ndenseMatrix []\T1/ptm/m/n/10 is the vir-tual class of all den se \T1/ptm/b/n/10 l\T1/ptm/m/n/10 ogical (S4) ma-tri-ces. It ex-tends both Underfull \hbox (badness 6063) in paragraph at lines 9257--9260 []\T1/pcr/m/n/10 signature(x = "ndenseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2495] Underfull \hbox (badness 3312) in paragraph at lines 9314--9316 []\T1/ptm/m/n/10 logical in-di-cat-ing if []\T1/pcr/m/n/10 X <- (X + t(X))/2 [] \T1/ptm/m/n/10 should be done, af-ter []\T1/pcr/m/n/10 X <- [2496] [2497] Overfull \hbox (85.38034pt too wide) in paragraph at lines 9417--9417 [] \T1/pcr/m/n/9 all.equal(n.A.m, unname(as.matrix(n.A$mat)), tolerance = 1e -15)# seen rel.d.= 1.46e-16[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 9457--9457 []\T1/pcr/m/n/9 stopifnot(all.equal(ncr, ncF))# norm type does not matter at a ll in this example[] [2498] Underfull \hbox (badness 2635) in paragraph at lines 9510--9515 []\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ndenseMatrix"[]\T1/ptm/m/n/10 , di-rec tly. Class []\T1/pcr/m/n/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/ 10 "ndenseMatrix"[]\T1/ptm/m/n/10 . Underfull \hbox (badness 4229) in paragraph at lines 9510--9515 \T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "denseMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/10 "ndenseMatrix"[]\T1/ptm/m/n/10 . Class []\T1/pcr/m/n/10 "Matri x"[]\T1/ptm/m/n/10 , by class Underfull \hbox (badness 10000) in paragraph at lines 9518--9521 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n /10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/ 10 ); use, e.g., [2499] Underfull \hbox (badness 2521) in paragraph at lines 9586--9592 []\T1/pcr/m/n/10 signature(from = "matrix", to = "nMatrix")[]\T1/ptm/m/n/10 : N ote that these co-er-cions [2500] Underfull \hbox (badness 1867) in paragraph at lines 9699--9701 []\T1/ptm/m/n/10 fast sim- [2501]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.nor m}) has been already used, duplicate ignored \relax l.9741 \aliasA{norm}{norm-methods}{norm} [2502] Overfull \hbox (4.38043pt too wide) in paragraph at lines 9836--9836 []\T1/pcr/m/n/9 A <- sparseMatrix(i, j, x = x) ## 8 x 10 "dgCMatrix"[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 9837--9837 []\T1/pcr/m/n/9 (sA <- sparseMatrix(i, j, x = x, symmetric = TRUE)) ## 10 x 10 "dsCMatrix"[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 9838--9838 []\T1/pcr/m/n/9 (tA <- sparseMatrix(i, j, x = x, triangular= TRUE)) ## 10 x 10 "dtCMatrix"[] Underfull \hbox (badness 2401) in paragraph at lines 9883--9893 []\T1/ptm/m/n/10 These can be stored in the ``triplet'' form ([][][]\T1/pcr/m/n /10 TsparseMatrix[][][][]\T1/ptm/m/n/10 , sub-classes []\T1/pcr/m/n/10 ngTMatri x[]\T1/ptm/m/n/10 , [2503] Underfull \hbox (badness 3179) in paragraph at lines 9954--9957 []\T1/pcr/m/n/10 signature(x = "lsparseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cal ly equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2504] Underfull \hbox (badness 10000) in paragraph at lines 10034--10037 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n /10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/ 10 ; use, e.g., [2505] Underfull \hbox (badness 10000) in paragraph at lines 10098--10101 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n /10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/ 10 ; use, e.g., [2506] Underfull \hbox (badness 10000) in paragraph at lines 10172--10174 []\T1/ptm/m/n/10 typically a []\T1/pcr/m/n/10 "packedMatrix"[]\T1/ptm/m/n/10 , though [2507] [2508] [2509] Underfull \hbox (badness 10000) in paragraph at lines 10386--10389 []\T1/pcr/m/n/10 signature(x = "pMatrix", y = "Matrix") []\T1/ptm/m/n/10 and ot h-ers listed by Underfull \hbox (badness 8189) in paragraph at lines 10386--10389 []\T1/pcr/m/n/10 showMethods("%*%", classes = "pMatrix")[]\T1/ptm/m/n/10 : ma-t rix prod-ucts im-ple-mented Underfull \hbox (badness 10000) in paragraph at lines 10389--10393 []\T1/pcr/m/n/10 signature(from = "numeric", to = "pMatrix")[]\T1/ptm/m/n/10 : sup-port-ing typ-i-cal Underfull \hbox (badness 2460) in paragraph at lines 10397--10403 []\T1/pcr/m/n/10 signature(a = "pMatrix", b = "missing")[]\T1/ptm/m/n/10 : the in-verse per-mu-ta-tion ma-trix, [2510] Overfull \hbox (36.78088pt too wide) in paragraph at lines 10467--10467 [] \T1/pcr/m/n/10 col.names, note.dropping.colnames = TRUE, uniD iag = TRUE,[] Overfull \hbox (42.78088pt too wide) in paragraph at lines 10470--10470 []\T1/pcr/m/n/10 printSpMatrix(x, digits = NULL, maxp = max(100L, getOption("m ax.print")),[] Overfull \hbox (42.78088pt too wide) in paragraph at lines 10472--10472 [] \T1/pcr/m/n/10 zero.print = ".", col.names, note.dropping.coln ames = TRUE,[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 10476--10476 []\T1/pcr/m/n/10 printSpMatrix2(x, digits = NULL, maxp = max(100L, getOption(" max.print")),[] [2511] Overfull \hbox (42.78088pt too wide) in paragraph at lines 10477--10477 [] \T1/pcr/m/n/10 zero.print = ".", col.names, note.dropping.coln ames = TRUE,[] Underfull \hbox (badness 3989) in paragraph at lines 10502--10512 []\T1/ptm/m/n/10 logical or string spec-i-fy-ing if and how col-umn names of [] \T1/pcr/m/n/10 x []\T1/ptm/m/n/10 should Underfull \hbox (badness 10000) in paragraph at lines 10502--10512 \T1/ptm/m/n/10 be printed, pos-si-bly ab-bre-vi-ated. The de-fault is taken fro m [2512]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr} ) has been already used, duplicate ignored \relax l.10604 \aliasA{qr}{qr-methods}{qr} [2513] [2514] Overfull \hbox (25.98041pt too wide) in paragraph at lines 10736--10736 [] \T1/pcr/m/n/9 all.equal(qr.coef(qr.A1, b), drop(solve(crossprod(A1), cro ssprod(A1, b))))[] [2515] Overfull \hbox (9.78043pt too wide) in paragraph at lines 10752--10752 [] \T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 qr.coef\TS1/pcr/m/n/9 ' \ T1/pcr/m/n/9 computes unique least squares solution of "nearby" problem[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 10753--10753 [] \T1/pcr/m/n/9 ## Z x = b for some full rank Z ~ A, currently without war ning {FIXME} ![] Overfull \hbox (9.78043pt too wide) in paragraph at lines 10796--10796 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m atrix"), ...)[] Underfull \vbox (badness 10000) has occurred while \output is active [2516] Underfull \hbox (badness 2005) in paragraph at lines 10848--10854 []\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of [][][]\T1/pcr/m/n/10 qr[][][](x, tol, Underfull \hbox (badness 10000) in paragraph at lines 10865--10868 []\T1/ptm/m/n/10 is for back com-pat-i-bil-ity; for dense []\T1/pcr/m/n/10 x[]\ T1/ptm/m/n/10 , it cor-re-sponds to [2517] [2518] Overfull \hbox (85.38034pt too wide) in paragraph at lines 10962--10962 []\T1/pcr/m/n/9 ## The meaning of \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 tol\TS1/pcr/m/ n/9 ' \T1/pcr/m/n/9 for method="qrLINPACK" and *dense* x is not entirely "scale free"[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 10978--10978 []\T1/pcr/m/n/9 sapply(meths, function(.m.) rankMatrix(M15, method = .m., tol = 1e-7)) # all 14[] Overfull \hbox (52.98038pt too wide) in paragraph at lines 10985--10985 []\T1/pcr/m/n/9 (st1 <- system.time(r1 <- rankMatrix(L))) # war ning+ ~1.5 sec (2013)[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 10986--10986 []\T1/pcr/m/n/9 (st2 <- system.time(r2 <- rankMatrix(L, method = "qr"))) # con siderably faster![] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rcond}) h as been already used, duplicate ignored \relax l.11005 \aliasA{rcond}{rcond-methods}{rcond} [2519] [2520] Overfull \hbox (20.58041pt too wide) in paragraph at lines 11121--11121 []\T1/pcr/m/n/9 rcond(x2 <- cbind(x1, 2:11))# practically 0, since x2 does not have full rank[] [2521] [2522] Underfull \hbox (badness 2150) in paragraph at lines 11287--11295 \T1/ptm/m/n/10 dices, if not []\T1/pcr/m/n/10 symmetric [][]sample.int[][][](nr ow*ncol, nnz)[]\T1/ptm/m/n/10 , then---if []\T1/pcr/m/n/10 rand.x []\T1/ptm/m/n /10 is not [2523] [2524] Underfull \hbox (badness 5147) in paragraph at lines 11444--11447 []\T1/ptm/m/n/10 Class [][][]\T1/pcr/m/n/10 SchurFactorization[][][][]\T1/ptm/m /n/10 , di-rectly. Class [][][]\T1/pcr/m/n/10 MatrixFactorization[][][][]\T1/pt m/m/n/10 , by class [2525] Underfull \hbox (badness 3179) in paragraph at lines 11459--11462 []\T1/pcr/m/n/10 signature(from = "Schur", logarithm = "logical")[]\T1/ptm/m/n/ 10 : com-putes [2526] [2527] Overfull \hbox (9.78043pt too wide) in paragraph at lines 11623--11623 [] \T1/pcr/m/n/9 all.equal(e1, e3[order(Mod(e3), decreasing = TRUE)], toler ance = 1e-13)[] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solve}) h as been already used, duplicate ignored \relax l.11633 \aliasA{solve}{solve-methods}{solve} [2528] Overfull \hbox (90.78088pt too wide) in paragraph at lines 11757--11757 []\T1/pcr/m/n/10 solve(a, b, system = c("A", "LDLt", "LD", "DLt", "L", "Lt", " D", "P", "Pt"), ...)[] Underfull \hbox (badness 1147) in paragraph at lines 11769--11775 []\T1/ptm/m/n/10 a vec-tor, [][][]\T1/pcr/m/n/10 sparseVector[][][][]\T1/ptm/m/ n/10 , ma-trix, or [][][]\T1/pcr/m/n/10 Matrix[][][] []\T1/ptm/m/n/10 sat-is-fy -ing []\T1/pcr/m/n/10 NROW(b) == Underfull \hbox (badness 3460) in paragraph at lines 11819--11824 []\T1/ptm/m/n/10 Methods for dense []\T1/pcr/m/n/10 a []\T1/ptm/m/n/10 are buil t on 14 LA-PACK rou-tines: class []\T1/pcr/m/n/10 d..Matrix[]\T1/ptm/m/n/10 , w here Underfull \hbox (badness 2359) in paragraph at lines 11825--11839 []\T1/ptm/m/n/10 Methods for sparse []\T1/pcr/m/n/10 a []\T1/ptm/m/n/10 are bui lt on CXS-parse rou-tines []\T1/pcr/m/n/10 cs_lsolve[]\T1/ptm/m/n/10 , []\T1/pc r/m/n/10 cs_usolve[]\T1/ptm/m/n/10 , and [2529] Overfull \hbox (52.98038pt too wide) in paragraph at lines 11892--11892 []\T1/pcr/m/n/9 image(ia0 <- solve(a, tol = 0)) # checker board, dense [but re ally, a is singular!][] Overfull \hbox (25.98041pt too wide) in paragraph at lines 11896--11896 [] \T1/pcr/m/n/9 ## Fails on 32-bit [Fedora 19, R 3.0.2] from Matrix 1.1-0 on [FIXME ??] only[] [2530] Underfull \hbox (badness 10000) in paragraph at lines 11919--11922 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu la and data frame Overfull \hbox (6.78088pt too wide) in paragraph at lines 11936--11936 [] \T1/pcr/m/n/10 drop.unused.levels = TRUE, repr = c("C", "R", "T"), giveCs parse)[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 11938--11938 [] \T1/pcr/m/n/10 drop.unused.levels = TRUE, repr = c("C", "R", "T"), giveCs parse,[] Underfull \hbox (badness 1648) in paragraph at lines 11947--11949 []\T1/ptm/m/n/10 a data frame cre-ated with [][][]\T1/pcr/m/n/10 model.frame[][ ][][]\T1/ptm/m/n/10 . If an-other sort of ob-ject, Underfull \hbox (badness 10000) in paragraph at lines 11955--11958 []\T1/ptm/m/n/10 character string or []\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or (co-er-ca-ble to) Underfull \hbox (badness 2591) in paragraph at lines 11955--11958 []\T1/pcr/m/n/10 "[][]sparseMatrix[][][]"[]\T1/ptm/m/n/10 , spec-i-fy-ing the c on-trasts to be ap-plied to the Underfull \hbox (badness 10000) in paragraph at lines 11966--11970 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for Underfull \hbox (badness 2828) in paragraph at lines 11966--11970 []\T1/pcr/m/n/10 sparse.model.matrix []\T1/ptm/m/n/10 has been changed to []\T1 /pcr/m/n/10 FALSE[]\T1/ptm/m/n/10 , 2010-07, for [2531] Underfull \hbox (badness 1668) in paragraph at lines 11981--11986 [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string, one of []\T1/pcr/ m/n/10 "C"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 , or []\T1/pc r/m/n/10 "R"[]\T1/ptm/m/n/10 , spec-i-fy-ing the sparse Underfull \hbox (badness 3291) in paragraph at lines 12008--12013 []\T1/pcr/m/n/10 model.Matrix(sparse = TRUE) []\T1/ptm/m/n/10 from pack-age [][ ]\T1/ptm/b/n/10 Ma-trix-Mod-els[][] \T1/ptm/m/n/10 may be nowa-days be Underfull \hbox (badness 2073) in paragraph at lines 12008--12013 \T1/ptm/m/n/10 prefer-able to []\T1/pcr/m/n/10 sparse.model.matrix[]\T1/ptm/m/n /10 , as []\T1/pcr/m/n/10 model.Matrix []\T1/ptm/m/n/10 re-turns an ob-ject of class [2532] Overfull \hbox (4.38043pt too wide) in paragraph at lines 12061--12061 [] \T1/pcr/m/n/9 is(M <- fac2sparse(f30, drop= TRUE),"CsparseMatrix"), dim(M) == c(0, 0),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 12062--12062 [] \T1/pcr/m/n/9 is(M <- fac2sparse(f30, drop=FALSE),"CsparseMatrix"), dim(M) == c(3, 0),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 12063--12063 [] \T1/pcr/m/n/9 is(M <- fac2sparse(f12, drop= TRUE),"CsparseMatrix"), dim(M) == c(0,12),[] [2533] Underfull \hbox (badness 2961) in paragraph at lines 12125--12128 []\T1/pcr/m/n/10 signature(from = "sparseLU", logarithm = "logical")[]\T1/ptm/m /n/10 : com- Overfull \hbox (9.78043pt too wide) in paragraph at lines 12168--12168 []\T1/pcr/m/n/9 A <- as(readMM(system.file("external", "pores_1.mtx", package = "Matrix")),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 12179--12179 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m atrix"), ...)[] [2534] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12186--12186 [] \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(dn[1L ], list(NULL)),[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12189--12189 [] \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list( NULL), dn[2L]),[] Underfull \hbox (badness 10000) in paragraph at lines 12214--12216 []\T1/ptm/m/n/10 This in-ter-face is rec-om-mended over di-rect con-struc-tion via calls such as Overfull \hbox (0.78088pt too wide) in paragraph at lines 12221--12221 [] \T1/pcr/m/n/10 symmetric = FALSE, triangular = FALSE, index1 = TRUE,[] [2535] Underfull \hbox (badness 2261) in paragraph at lines 12259--12265 \T1/ptm/m/n/10 of the sparse ma-trix re-sult, i.e., spec-i-fy-ing one of the vi r-tual classes [2536] Underfull \hbox (badness 10000) in paragraph at lines 12348--12351 []\T1/ptm/m/n/10 The stan-dard \T1/phv/m/n/10 R [][][]\T1/pcr/m/n/10 xtabs[][][ ](*, sparse=TRUE)[]\T1/ptm/m/n/10 , for sparse ta-bles and Overfull \hbox (4.38043pt too wide) in paragraph at lines 12361--12361 []\T1/pcr/m/n/9 (A <- sparseMatrix(i, j, x = x)) ## 8 x 10 "dgCMatrix"[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 12365--12365 []\T1/pcr/m/n/9 (sA <- sparseMatrix(i, j, x = x, symmetric = TRUE)) ## 10 x 10 "dsCMatrix"[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 12366--12366 []\T1/pcr/m/n/9 (tA <- sparseMatrix(i, j, x = x, triangular= TRUE)) ## 10 x 10 "dtCMatrix"[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 12371--12371 []\T1/pcr/m/n/9 (AA <- sparseMatrix(c(1,3:8), c(2,9,6:10), x = 7 * (1:7), dims = c(10,20)))[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 12374--12374 []\T1/pcr/m/n/9 ## i, j and x can be in an arbitrary order, as long as they ar e consistent[] [2537] Overfull \hbox (15.18042pt too wide) in paragraph at lines 12397--12397 []\T1/pcr/m/n/9 ## pointer vectors can be used, and the (i,x) slots are sorted if necessary:[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 12398--12398 []\T1/pcr/m/n/9 m <- sparseMatrix(i = c(3,1, 3:2, 2:1), p= c(0:2, 4,4,6), x = 1:6, dimnames = dn)[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 12424--12424 []\T1/pcr/m/n/9 ## pointers example in converting from other sparse matrix rep resentations.[] Overfull \hbox (47.58038pt too wide) in paragraph at lines 12427--12427 [] \T1/pcr/m/n/9 nzchar(dfil <- system.file("extdata", "rua_32_ax.rua", pack age = "SparseM"))) {[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 12429--12429 [] \T1/pcr/m/n/9 XX <- sparseMatrix(j = X@ja, p = X@ia - 1L, x = X@ra, dims = X@dimension)[] [2538] Underfull \hbox (badness 6842) in paragraph at lines 12519--12522 []\T1/pcr/m/n/10 (x = "sparseMatrix", logarithm=TRUE)[]\T1/ptm/m/n/10 : [][][]\ T1/pcr/m/n/10 determinant[][][]() []\T1/ptm/m/n/10 meth-ods Underfull \hbox (badness 10000) in paragraph at lines 12554--12558 [][][]\T1/pcr/m/n/10 sparseMatrix[][][][]\T1/ptm/m/n/10 , and its ref-er-ences, such as [][][]\T1/pcr/m/n/10 xtabs[][][](*, sparse=TRUE)[]\T1/ptm/m/n/10 , or [2539] [2540] Underfull \hbox (badness 2961) in paragraph at lines 12738--12741 []\T1/pcr/m/n/10 signature(from = "sparseQR", logarithm = "logical")[]\T1/ptm/m /n/10 : com- [2541] Underfull \hbox (badness 3229) in paragraph at lines 12816--12820 []\T1/ptm/m/n/10 The many aux-il-iary func-tions for QR fac-tor-iza-tions: [][] []\T1/pcr/m/n/10 qr.Q[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 qr.R[][][][] \T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 qr.X[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc r/m/n/10 qr.coef[][][][]\T1/ptm/m/n/10 , [2542] Overfull \hbox (9.78043pt too wide) in paragraph at lines 12856--12856 []\T1/pcr/m/n/9 ae1 <- function(a, b, ...) all.equal(as(a, "matrix"), as(b, "m atrix"), ...)[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12864--12864 [] \T1/pcr/m/n/9 new("pMatrix", Dim = c(m, m), Dimnames = c(dn[1L ], list(NULL)),[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12867--12867 [] \T1/pcr/m/n/9 new("pMatrix", Dim = c(n, n), Dimnames = c(list( NULL), dn[2L]),[] Underfull \vbox (badness 10000) has occurred while \output is active [2543] Overfull \hbox (42.18039pt too wide) in paragraph at lines 12886--12886 [] \T1/pcr/m/n/9 ae2(qrc <- qr.coef (qr.A, b), with(e.qr.A, solve(R1 %*% P 2., t(qrQ)) %*% b))[] Underfull \hbox (badness 5036) in paragraph at lines 12921--12923 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2544] Underfull \hbox (badness 2970) in paragraph at lines 13044--13050 []\T1/ptm/m/n/10 Sparse Vec-tor Classes: The vir-tual mother class []\T1/pcr/m/ n/10 "sparseVector" []\T1/ptm/m/n/10 has the five ac- Underfull \hbox (badness 3679) in paragraph at lines 13044--13050 \T1/ptm/m/n/10 tual daugh-ter classes []\T1/pcr/m/n/10 "dsparseVector"[]\T1/ptm /m/n/10 , []\T1/pcr/m/n/10 "isparseVector"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 " lsparseVector"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 13089--13092 []\T1/pcr/m/n/10 signature(x = "sparseVector", mode = "character") []\T1/ptm/m/ n/10 co-erces sparse [2545] Underfull \hbox (badness 10000) in paragraph at lines 13123--13128 []\T1/pcr/m/n/10 (x = "nsparseVector")[]\T1/ptm/m/n/10 : re-turn [][][]\T1/pcr/ m/n/10 logical[][][] []\T1/ptm/m/n/10 or Underfull \hbox (badness 10000) in paragraph at lines 13141--13143 [][][]\T1/pcr/m/n/10 sparseVector[][][]() []\T1/ptm/m/n/10 for friendly con-str uc-tion of sparse vec-tors (apart from []\T1/pcr/m/n/10 as(*, [2546] Underfull \vbox (badness 10000) has occurred while \output is active [2547] Overfull \hbox (24.78088pt too wide) in paragraph at lines 13237--13237 []\T1/pcr/m/n/10 spMatrix(nrow, ncol, i = integer(0L), j = integer(0L), x = do uble(0L)) Underfull \hbox (badness 2310) in paragraph at lines 13264--13270 [][][]\T1/pcr/m/n/10 Matrix[][][](*, sparse=TRUE) []\T1/ptm/m/n/10 for the more usual con-struc-tor of such ma-tri-ces. Then, [2548]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.[<. Rdash.}) has been already used, duplicate ignored \relax l.13316 ...\Rdash{}}{subassign-methods}{[<.Rdash.} Underfull \hbox (badness 6910) in paragraph at lines 13403--13405 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2549]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.[}) has been already used, duplicate ignored \relax l.13450 \aliasA{[}{subscript-methods}{[} [2550] Underfull \hbox (badness 2591) in paragraph at lines 13585--13590 \T1/ptm/m/n/10 Classes [][][]\T1/pcr/m/n/10 triangularMatrix[][][][]\T1/ptm/m/n /10 , and, e.g., [][][]\T1/pcr/m/n/10 dsyMatrix[][][] []\T1/ptm/m/n/10 for nu-m eric \T1/ptm/m/it/10 dense \T1/ptm/m/n/10 ma-tri-ces, or [2551] Underfull \hbox (badness 2057) in paragraph at lines 13661--13663 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., Underfull \hbox (badness 6396) in paragraph at lines 13670--13674 []\T1/pcr/m/n/10 symmpart(x) []\T1/ptm/m/n/10 re-turns a sym-met-ric ma-trix, i n-her-it-ing from [][][]\T1/pcr/m/n/10 symmetricMatrix[][][] []\T1/ptm/m/n/10 o r [2552] Underfull \hbox (badness 7722) in paragraph at lines 13675--13680 []\T1/pcr/m/n/10 skewpart(x) []\T1/ptm/m/n/10 re-turns a skew-symmetric ma-trix , in-her-it-ing from [][][]\T1/pcr/m/n/10 generalMatrix[][][][]\T1/ptm/m/n/10 , [2553] Underfull \hbox (badness 6641) in paragraph at lines 13752--13755 []\T1/ptm/m/n/10 Currently, [][][]\T1/pcr/m/n/10 Schur[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 isSymmetric[][][] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 as () []\T1/ptm/m/n/10 (i.e. [][][]\T1/pcr/m/n/10 coerce[][][][]\T1/ptm/m/n/10 ) h ave meth-ods with Underfull \hbox (badness 5133) in paragraph at lines 13788--13792 []\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 "TsparseMatrix" []\T1/ptm/m/n/10 class is the vir-tual class of all sparse ma-tri-ces coded in Underfull \hbox (badness 2818) in paragraph at lines 13788--13792 \T1/ptm/m/n/10 triplet form. Since it is a vir-tual class, no ob-jects may be c re-ated from it. See [2554] [2555] Underfull \hbox (badness 1668) in paragraph at lines 13915--13918 [][][]\T1/pcr/m/n/10 pack[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 unpac k[][][][]\T1/ptm/m/n/10 ; its vir-tual "com-ple-ment" []\T1/pcr/m/n/10 "[][]pac kedMatrix[][][]"[]\T1/ptm/m/n/10 ; its proper sub-classes [2556] Underfull \hbox (badness 10000) in paragraph at lines 14026--14032 []\T1/ptm/m/n/10 GAL lat-tice file `\T1/pcr/m/n/10 usc_q.GAL\T1/ptm/m/n/10 ' (r e-trieved in 2008 from [2557] [2558] [2559]) (./boot-pkg.tex [2560] Chapter 18. [2561] [2562] [2563] [2564] [2565] [2566] [2567] Overfull \hbox (12.78088pt too wide) in paragraph at lines 532--532 []\T1/pcr/m/n/10 boot(data, statistic, R, sim = "ordinary", stype = c("i", "f" , "w"), [2568] Underfull \hbox (badness 1325) in paragraph at lines 570--577 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sim-u-la-tion r e-quired. Pos-si-ble Underfull \hbox (badness 1275) in paragraph at lines 585--590 []\T1/ptm/m/n/10 An in-te-ger vec-tor or fac-tor spec-i-fy-ing the strata for m ulti-sample prob- [2569] [2570] [2571] Underfull \hbox (badness 1881) in paragraph at lines 826--828 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. Underfull \hbox (badness 6493) in paragraph at lines 853--857 [][][]\T1/pcr/m/n/10 boot.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 bo ot.ci[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 censboot[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/pcr/m/n/10 empinf[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 j ack.after.boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 tilt.boot[][][][]\T 1/ptm/m/n/10 , [2572] Overfull \hbox (4.38043pt too wide) in paragraph at lines 887--887 []\T1/pcr/m/n/9 nuke.lm <- glm(log(cost) ~ date+log(cap)+ne+ct+log(cum.n)+pt, data = nuke)[] Underfull \vbox (badness 10000) has occurred while \output is active [2573] [2574] [2575] Underfull \hbox (badness 1496) in paragraph at lines 1084--1093 []\T1/ptm/m/n/10 If sup-plied, a value to be used as an es-ti-mate of the vari- ance of the Underfull \hbox (badness 2005) in paragraph at lines 1084--1093 \T1/ptm/m/n/10 statis-tic for the nor-mal ap-prox-i-ma-tion and stu-den-tized i n-ter-vals. If it Underfull \hbox (badness 2343) in paragraph at lines 1084--1093 \T1/ptm/m/n/10 is not sup-plied and []\T1/pcr/m/n/10 length(index) []\T1/ptm/m/ n/10 is 2 then []\T1/pcr/m/n/10 var.t0 []\T1/ptm/m/n/10 de-faults to Underfull \hbox (badness 2150) in paragraph at lines 1105--1111 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2576] [2577] [2578] [2579] Underfull \hbox (badness 1571) in paragraph at lines 1445--1447 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2580] [2581] [2582] [2583] [2584] Overfull \hbox (12.78088pt too wide) in paragraph at lines 1738--1738 []\T1/pcr/m/n/10 censboot(data, statistic, R, F.surv, G.surv, strata = matrix( 1,n,2), [2585] [2586] [2587] Underfull \vbox (badness 10000) has occurred while \output is active [2588] Overfull \hbox (31.3804pt too wide) in paragraph at lines 2013--2013 []\T1/pcr/m/n/9 mel.cox <- coxph(Surv(time, status == 1) ~ ns(thickness, df=4) + strata(ulcer),[] [2589] Underfull \hbox (badness 6268) in paragraph at lines 2084--2086 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2590] [2591] [2592] Underfull \hbox (badness 1565) in paragraph at lines 2338--2343 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2593] Underfull \hbox (badness 4595) in paragraph at lines 2363--2368 \T1/ptm/m/n/10 are passed un-changed ev-ery time []\T1/pcr/m/n/10 boot.out$stat istic []\T1/ptm/m/n/10 is called. Underfull \hbox (badness 1881) in paragraph at lines 2432--2434 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. Underfull \hbox (badness 2057) in paragraph at lines 2440--2441 [][][]\T1/pcr/m/n/10 boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 empinf[] [][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 k3.linear[][][][]\T1/ptm/m/n/10 , [ ][][]\T1/pcr/m/n/10 linear.approx[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 saddle.distn[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 smooth.spline[][][][] \T1/ptm/m/n/10 , [2594] [2595] Underfull \hbox (badness 1077) in paragraph at lines 2536--2540 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of []\T1/pcr/m /n/10 n/((n-1)*(n-2)) []\T1/ptm/m/n/10 where []\T1/pcr/m/n/10 n []\T1/ptm/m/n/1 0 is the sam-ple Underfull \hbox (badness 1112) in paragraph at lines 2536--2540 \T1/ptm/m/n/10 size, if []\T1/pcr/m/n/10 unbiased []\T1/ptm/m/n/10 is []\T1/pcr /m/n/10 FALSE []\T1/ptm/m/n/10 then a mul-ti-plier of []\T1/pcr/m/n/10 1/n []\T 1/ptm/m/n/10 is used. This is mul-ti-plied by [2596] [2597] [2598] [2599] [2600] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2895--2895 []\T1/pcr/m/n/10 EEF.profile(y, tmin = min(y) + 0.1, tmax = max(y) - 0.1, n.t = 25, Overfull \hbox (18.78088pt too wide) in paragraph at lines 2897--2897 []\T1/pcr/m/n/10 EL.profile(y, tmin = min(y) + 0.1, tmax = max(y) - 0.1, n.t = 25,[] [2601] [2602] [2603] Underfull \hbox (badness 3861) in paragraph at lines 3105--3108 [][][]\T1/pcr/m/n/10 boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 boot.arr ay[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 boot.ci[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 control[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 jack .after.boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 linear.approx[][][][]\ T1/ptm/m/n/10 , [2604] Overfull \hbox (36.78088pt too wide) in paragraph at lines 3158--3158 []\T1/pcr/m/n/10 envelope(boot.out = NULL, mat = NULL, level = 0.95, index = 1 :ncol(mat)) [2605] [2606] [2607] Overfull \hbox (9.78043pt too wide) in paragraph at lines 3378--3378 []\T1/pcr/m/n/9 # Example 9.8 of Davison and Hinkley (1997) requires tilting t he resampling [2608] [2609] [2610] [2611] [2612] [2613] [2614] Overfull \hbox (18.78088pt too wide) in paragraph at lines 3838--3838 [] \T1/pcr/m/n/10 t = boot.out$t[, index], w = NULL, def = TRUE, q = NULL)[] [2615] [2616] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3977--3977 []\T1/pcr/m/n/9 grav.p <- imp.prob(grav.tilt.boot, w = grav.w, index = 3, t0 = grav.z0[3])[] [2617] [2618] [2619] [2620] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4259--4259 []\T1/pcr/m/n/9 # To draw the jackknife-after-bootstrap plot for the head siz e data as in [2621] [2622] Underfull \hbox (badness 10000) in paragraph at lines 4362--4364 []\T1/ptm/m/n/10 The in-dex of the vari-able of in-ter-est within the out-put o f Underfull \hbox (badness 1430) in paragraph at lines 4371--4375 \T1/ptm/m/n/10 If []\T1/pcr/m/n/10 t0 []\T1/ptm/m/n/10 is sup-plied but nei-the r []\T1/pcr/m/n/10 t []\T1/ptm/m/n/10 nor []\T1/pcr/m/n/10 L []\T1/ptm/m/n/10 a re sup-plied then []\T1/pcr/m/n/10 t0 []\T1/ptm/m/n/10 is set to [2623] [2624] [2625] [2626] [2627] [2628] [2629] [2630] [2631] Underfull \hbox (badness 3000) in paragraph at lines 4959--4962 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2632] [2633] [2634] [2635] Underfull \hbox (badness 2293) in paragraph at lines 5238--5241 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5238--5241 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2636] Overfull \hbox (20.58041pt too wide) in paragraph at lines 5317--5317 []\T1/pcr/m/n/9 grav.boot <- boot(grav1, grav.fun, R = 499, stype = "w", strat a = grav1[, 2])[] [2637] [2638] [2639] [2640] [2641] [2642] [2643] [2644] Overfull \hbox (15.18042pt too wide) in paragraph at lines 5866--5866 []\T1/pcr/m/n/9 city.sp1$spa[1] <- jacobian(city, 1.25, city.sp1$zeta.hat) * c ity.sp1$spa[1][] [2645] Underfull \hbox (badness 1127) in paragraph at lines 5988--6006 []\T1/ptm/m/n/10 etc. un-til a point is found with a cdf ap-prox-i-ma-tion less than []\T1/pcr/m/n/10 min(alpha)/10[]\T1/ptm/m/n/10 , then [2646] Underfull \hbox (badness 2837) in paragraph at lines 6021--6024 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class []\T1/pcr/m/n/10 "s addle.distn"[]\T1/ptm/m/n/10 . See the help file for [2647] [2648] [2649] [2650] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6306--6306 []\T1/pcr/m/n/9 # This example is taken from Exercise 7.5 of Gill, Murray and Wright (1991). [2651] [2652] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6495--6495 []\T1/pcr/m/n/9 # Example 9.8 of Davison and Hinkley (1997) requires tilting t he resampling Overfull \hbox (20.58041pt too wide) in paragraph at lines 6497--6497 []\T1/pcr/m/n/9 # value of the test statistic 1.84. In the book exponential t ilting was used[] [2653] [2654] [2655] Underfull \hbox (badness 1596) in paragraph at lines 6742--6746 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2656] [2657] Overfull \hbox (20.58041pt too wide) in paragraph at lines 6902--6902 [] \T1/pcr/m/n/9 stype = "i", sim = "balanced", alpha = c(0.05, 0.95),[] [2658] [2659] [2660] [2661] [2662] [2663] [2664] [2665]) (./class-pkg.tex [2666] Chapter 19. [2667] [2668] [2669] [2670] [2671] [2672] [2673] [2674] [2675] [2676] [2677] [2678] [2679] [2680] Overfull \hbox (42.18039pt too wide) in paragraph at lines 1006--1006 [] \T1/pcr/m/n/9 alpha = list(seq(0.05, 0, length.out = 1e4), seq(0.02, 0, length.out = 1e5)),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1007--1007 [] \T1/pcr/m/n/9 radii = list(seq(8, 1, length.out = 1e4), seq(4, 1, length .out = 1e5)))[] [2681] [2682]) (./cluster-pkg.tex Chapter 20. [2683] [2684] [2685] Overfull \hbox (42.18039pt too wide) in paragraph at lines 253--253 [] \T1/pcr/m/n/9 all.equal(a.wgt [iC], agnes(d.vr, method="flexible", par.met hod = 0.5)[iC]) ,[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 254--254 [] \T1/pcr/m/n/9 all.equal(a.sing[iC], agnes(d.vr, method="flex", par.method= c(.5,.5,0, -.5))[iC]),[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 255--255 [] \T1/pcr/m/n/9 all.equal(a.comp[iC], agnes(d.vr, method="flex", par.method= c(.5,.5,0, +.5))[iC]))[] [2686] [2687] Underfull \vbox (badness 10000) has occurred while \output is active [2688] [2689] Overfull \hbox (18.78088pt too wide) in paragraph at lines 519--519 [] \T1/pcr/m/n/10 col = c(2, 0), border = 0, axes = TRUE, frame.plot = axes,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 523--523 [] \T1/pcr/m/n/10 yaxRight = fromLeft, y.mar = 2.4 + max.strlen/2.5, ...)[] [2690] [2691] Overfull \hbox (66.78088pt too wide) in paragraph at lines 638--638 [] \T1/pcr/m/n/10 keep.data = medoids.x, rngR = FALSE, pamLike = FALSE, c orrect.d = TRUE)[] [2692] [2693] [2694] Underfull \hbox (badness 2941) in paragraph at lines 792--795 [][][]\T1/pcr/m/n/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-en ces; [][][]\T1/pcr/m/n/10 clara.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/ n/10 pam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 partition.object[][][][]\ T1/ptm/m/n/10 , Overfull \hbox (4.38043pt too wide) in paragraph at lines 833--833 [] \T1/pcr/m/n/9 cl[,i] <- clara(xclara, nCl, medoids.x = FALSE, rngR = TRUE )$clustering[] [2695] Overfull \hbox (9.78043pt too wide) in paragraph at lines 835--835 []\T1/pcr/m/n/9 ## those that are not always in same cluster (5 out of 3000 fo r this seed):[] Underfull \hbox (badness 10000) in paragraph at lines 882--884 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2696] Overfull \hbox (24.78088pt too wide) in paragraph at lines 947--947 [] \T1/pcr/m/n/10 arrowArgs = list(col="red3", length=1/16, angle=90, code =3), ...)[] [2697] Underfull \hbox (badness 4872) in paragraph at lines 992--994 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 1006--1010 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2698] Underfull \hbox (badness 2503) in paragraph at lines 1092--1096 []\T1/ptm/m/n/10 Per Broberg (2006). SAGx: Sta-tis-ti-cal Anal-y-sis of the Gen eChip. R pack-age ver- [2699] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1118--1118 [] \T1/pcr/m/n/9 sapply(mets, function(M) maxSE(fk, sk, method = M, SE. factor = SEf)))[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 1135--1135 []\T1/pcr/m/n/9 ## You can manually set it before running this : doExtras < - TRUE # or FALSE[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1144--1144 [] \T1/pcr/m/n/9 gskmn <- clusGap(x, FUNcluster = kmeans, nstart = 20, K.max = 8, B = 60)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1146--1146 [] \T1/pcr/m/n/9 plot(gskmn, main = "clusGap(., FUNcluster = kmeans, n.start= 20, B= 60)")[] Underfull \vbox (badness 10000) has occurred while \output is active [2700] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1173--1173 []\T1/pcr/m/n/9 plot(gsP.Z, main = "clusGap() ==> k = 1 clust er is optimal")[] Underfull \hbox (badness 4144) in paragraph at lines 1205--1209 []\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 does not have a []\T1 /pcr/m/n/10 diss []\T1/ptm/m/n/10 nor a []\T1/pcr/m/n/10 data []\T1/ptm/m/n/10 com-po-nent, e.g., for [2701] Overfull \hbox (60.78088pt too wide) in paragraph at lines 1281--1281 [] \T1/pcr/m/n/10 col.clus = if(color) c(2, 4, 6, 3) else 5, cex = 1, cex.txt = cex,[] Overfull \hbox (72.78088pt too wide) in paragraph at lines 1287--1287 [] \T1/pcr/m/n/10 round(100 * var.dec, digits = 2), "% of the poin t variability."),[] [2702] [2703] [2704] Underfull \hbox (badness 10000) in paragraph at lines 1474--1477 Underfull \hbox (badness 10000) in paragraph at lines 1488--1492 [][][]\T1/pcr/m/n/10 princomp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cmds cale[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pam[][][][]\T1/ptm/m/n/10 , [ ][][]\T1/pcr/m/n/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 daisy[][ ][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 par[][][][]\T1/ptm/m/n/10 , [][][]\T 1/pcr/m/n/10 identify[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cov.mve[][][ ][]\T1/ptm/m/n/10 , Overfull \hbox (31.3804pt too wide) in paragraph at lines 1512--1512 []\T1/pcr/m/n/9 clusplot(pamv, col.p = votes.clus, labels = 4)# color points a nd label ellipses[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 1522--1522 [] \T1/pcr/m/n/9 clusplot(votes.diss, votes.clus, diss = TRUE, labels = 5)# i dent. only points[] [2705] Underfull \hbox (badness 5741) in paragraph at lines 1562--1565 []\T1/pcr/m/n/10 coefHier() []\T1/ptm/m/n/10 di-rectly in-ter-faces to the un-d er-ly-ing C code, and ``proves'' that \T1/ptm/m/it/10 only [2706] Overfull \hbox (12.78088pt too wide) in paragraph at lines 1631--1631 [] \T1/pcr/m/n/10 warnBin = warnType, warnAsym = warnType, warnConst = wa rnType,[] [2707] Underfull \hbox (badness 1552) in paragraph at lines 1680--1682 []\T1/ptm/b/n/10 A\T1/ptm/m/n/10 symmetric bi-nary vari-able, aka []\T1/pcr/m/n /10 "A" []\T1/ptm/m/n/10 in re-sult []\T1/pcr/m/n/10 Types[]\T1/ptm/m/n/10 , se e Underfull \hbox (badness 1629) in paragraph at lines 1694--1698 []\T1/ptm/b/n/10 I\T1/ptm/m/n/10 nterval scaled -- the \T1/ptm/b/n/10 de-fault \T1/ptm/m/n/10 for all nu-meric Underfull \hbox (badness 3746) in paragraph at lines 1694--1698 \T1/ptm/m/n/10 (incl []\T1/pcr/m/n/10 integer[]\T1/ptm/m/n/10 ) columns of []\T 1/pcr/m/n/10 x[]\T1/ptm/m/n/10 , aka []\T1/pcr/m/n/10 "I" []\T1/ptm/m/n/10 in r e-sult []\T1/pcr/m/n/10 Types[]\T1/ptm/m/n/10 , see [2708] Underfull \hbox (badness 1540) in paragraph at lines 1769--1777 \T1/ptm/m/n/10 In other words, $\OML/cmm/m/it/10 d[]$ \T1/ptm/m/n/10 is a weigh ted mean of $\OML/cmm/m/it/10 d[]$ \T1/ptm/m/n/10 with weights $\OML/cmm/m/it/1 0 w[]^^N[]$\T1/ptm/m/n/10 , where $\OML/cmm/m/it/10 w[]$[]\T1/pcr/m/n/10 = [2709] Overfull \hbox (25.98041pt too wide) in paragraph at lines 1856--1856 []\T1/pcr/m/n/9 ## Example 2 in reference, extended --- different ways of "m ixed" / "gower":[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1860--1860 []\T1/pcr/m/n/9 summary(d0 <- daisy(flower)) # -> the first 3 {0,1} treate d as *N*ominal[] Overfull \hbox (90.78033pt too wide) in paragraph at lines 1861--1861 []\T1/pcr/m/n/9 summary(dS123 <- daisy(flower, type = list(symm = 1:3))) # fi rst 3 treated as *S*ymmetric[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 1862--1862 []\T1/pcr/m/n/9 stopifnot(dS123 == d0) # i.e., *S*ymmetric <==> *N*ominal {fo r 2-level factor}[] Overfull \hbox (106.98032pt too wide) in paragraph at lines 1866--1866 []\T1/pcr/m/n/9 summary(dA123 <- daisy(flowerN)) # .. all 3 logicals treated * A*symmetric binary (w/ warning)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1868--1868 []\T1/pcr/m/n/9 summary(dA13 <- daisy(flower, type = list(asymm = c(1, 3), ord ratio = 7)))[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1875--1875 []\T1/pcr/m/n/9 Nflow[,1:3] <- lapply(flower[,1:3], function(f) as.integer(as. character(f)))[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1876--1876 []\T1/pcr/m/n/9 summary(dN <- daisy(Nflow)) # w/ warning: treated binary .. 1: 3 as interval[] Overfull \hbox (117.7803pt too wide) in paragraph at lines 1877--1877 []\T1/pcr/m/n/9 ## Still, using Euclidean/Manhattan distance for {0-1} *is* id entical to treating them as "N" :[] Overfull \hbox (42.78088pt too wide) in paragraph at lines 1893--1893 []\T1/pcr/m/n/10 diana(x, diss = inherits(x, "dist"), metric = "euclidean", st and = FALSE, [2710] [2711] [2712] [2713] [2714] Underfull \hbox (badness 10000) in paragraph at lines 2212--2215 Underfull \hbox (badness 3179) in paragraph at lines 2223--2229 [][][]\T1/pcr/m/n/10 predict.ellipsoid[][][] []\T1/ptm/m/n/10 which is also the [][][]\T1/pcr/m/n/10 predict[][][] []\T1/ptm/m/n/10 method for []\T1/pcr/m/n/1 0 ellipsoid []\T1/ptm/m/n/10 ob-jects. [2715] [2716] Underfull \hbox (badness 10000) in paragraph at lines 2380--2383 [][][]\T1/pcr/m/n/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-en ces; [][][]\T1/pcr/m/n/10 fanny.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/ n/10 partition.object[][][][]\T1/ptm/m/n/10 , [2717] Underfull \hbox (badness 1292) in paragraph at lines 2448--2451 []\T1/ptm/m/n/10 named vec-tor with []\T1/pcr/m/n/10 iterations[]\T1/ptm/m/n/10 , the num-ber of it-er-a-tions needed and [2718] Underfull \hbox (badness 6675) in paragraph at lines 2457--2459 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see Underfull \hbox (badness 10000) in paragraph at lines 2480--2483 [][][]\T1/pcr/m/n/10 fanny[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.f anny[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 dissimilarity.object[][][][]\ T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 partition.object[][][][]\T1/ptm/m/n/10 , [2719] Overfull \hbox (15.18042pt too wide) in paragraph at lines 2555--2555 [] \T1/pcr/m/n/9 "4" = "red", "5" = "blue")[levels(f lowerN$color)][] Overfull \hbox (90.78033pt too wide) in paragraph at lines 2556--2556 []\T1/pcr/m/n/9 levels(flowerN$soil) <- c("1" = "dry", "2" = "normal", "3" = "wet")[levels(flowerN$soil)][] [2720] Overfull \hbox (48.78088pt too wide) in paragraph at lines 2619--2619 []\T1/pcr/m/n/10 medoids(x, clustering, diss = inherits(x, "dist"), USE.NAMES = FALSE, ...) [2721] Overfull \hbox (69.18036pt too wide) in paragraph at lines 2666--2666 [] \T1/pcr/m/n/9 stopifnot(length(cl.k) == nrow(votes.repub), 1 <= cl.k, cl.k <= k, table(cl.k) >= 2)[] [2722] Overfull \hbox (15.18042pt too wide) in paragraph at lines 2771--2771 []\T1/pcr/m/n/9 ## One place to see if/how error messages are *translated* (to \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 de\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 / \TS1/pcr/m/n/ 9 '\T1/pcr/m/n/9 pl\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ):[] [2723] Overfull \hbox (42.78088pt too wide) in paragraph at lines 2850--2850 [] \T1/pcr/m/n/10 variant = c("original", "o_1", "o_2", "f_3", "f_4", "f_5" , "faster"),[] [2724] [2725] [2726] [2727] Overfull \hbox (85.38034pt too wide) in paragraph at lines 3078--3078 []\T1/pcr/m/n/9 ## use obs. 1 & 16 as starting medoids -- same result (for see d above, *and* typically) :[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 3080--3080 []\T1/pcr/m/n/9 ## no _build_ *and* no _swap_ phase: just cluster all obs. aro und (1, 16):[] Overfull \hbox (63.78036pt too wide) in paragraph at lines 3083--3083 []\T1/pcr/m/n/9 keep_nms <- setdiff(names(pamx), c("call", "objective"))# .$ob jective["build"] differ[] [2728] Overfull \hbox (20.58041pt too wide) in paragraph at lines 3187--3187 []\T1/pcr/m/n/9 axis(1, k.best, paste("best",k.best,sep="\n"), col = "red", co l.axis = "red")[] [2729] [2730] [2731] Overfull \hbox (78.78088pt too wide) in paragraph at lines 3381--3381 [] \T1/pcr/m/n/10 sub = paste("Agglomerative Coefficient = ",round(x $ac, digits = 2)),[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 3382--3382 [] \T1/pcr/m/n/10 adj = 0, nmax.lab = 35, max.strlen = 5, xax.pretty = TRUE, ...)[] [2732] Underfull \hbox (badness 10000) in paragraph at lines 3449--3452 []\T1/ptm/m/n/10 For the den-dro-gram, more flex-i-bil-ity than via []\T1/pcr/m /n/10 pltree() []\T1/ptm/m/n/10 is pro-vided by []\T1/pcr/m/n/10 dg <- [2733] Overfull \hbox (54.78088pt too wide) in paragraph at lines 3499--3499 [] \T1/pcr/m/n/10 sub = paste("Divisive Coefficient = ", round(x$dc, digits = 2)),[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 3500--3500 [] \T1/pcr/m/n/10 adj = 0, nmax.lab = 35, max.strlen = 5, xax.pretty = TRUE, ...)[] [2734] [2735] [2736] Underfull \hbox (badness 10000) in paragraph at lines 3685--3688 []\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 does not have a []\T1 /pcr/m/n/10 diss []\T1/ptm/m/n/10 com-po-nent as for [][][]\T1/pcr/m/n/10 pam[] [][](*, Underfull \hbox (badness 1448) in paragraph at lines 3685--3688 \T1/pcr/m/n/10 keep.diss=FALSE)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 dist []\T1/p tm/m/n/10 must be the dis-sim-i-lar-ity if a clus-plot is [2737] Underfull \hbox (badness 10000) in paragraph at lines 3748--3753 [][][]\T1/pcr/m/n/10 partition.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n /10 clusplot.partition[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 clusplot.de fault[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pam[][][][]\T1/ptm/m/n/10 , [2738] Underfull \hbox (badness 1748) in paragraph at lines 3810--3815 \T1/ptm/m/n/10 dis-patches to [][][]\T1/pcr/m/n/10 plot.hclust[][][](..)[]\T1/p tm/m/n/10 . If more flex-i-ble plots are needed, con-sider []\T1/pcr/m/n/10 xx <- Underfull \hbox (badness 6268) in paragraph at lines 3822--3825 [][][]\T1/pcr/m/n/10 agnes[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 agnes.o bject[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 diana[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 diana.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/1 0 hclust[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 par[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.agnes[][][][]\T1/ptm/m/n/10 , [2739] Underfull \hbox (badness 10000) in paragraph at lines 3883--3885 []\T1/ptm/m/n/10 Available as `\T1/pcr/m/n/10 pluton.dat\T1/ptm/m/n/10 ' from t he archive of the Uni-ver-sity of Antwer-pen, [2740] [2741] Underfull \hbox (badness 10000) in paragraph at lines 4002--4005 [][][]\T1/pcr/m/n/10 summary.agnes[][][] []\T1/ptm/m/n/10 pro-duc-ing more out- put; [][][]\T1/pcr/m/n/10 agnes[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 ag nes.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/ n/10 , [2742] Underfull \hbox (badness 10000) in paragraph at lines 4033--4036 [][][]\T1/pcr/m/n/10 summary.clara[][][] []\T1/ptm/m/n/10 pro-duc-ing more out- put; [][][]\T1/pcr/m/n/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cl ara.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/ n/10 , [2743] Overfull \hbox (36.78088pt too wide) in paragraph at lines 4086--4086 [] \T1/pcr/m/n/10 digits = getOption("digits"), justify = "none", right = TRUE, ...)[] Underfull \hbox (badness 2035) in paragraph at lines 4097--4099 []\T1/ptm/m/n/10 a []\T1/pcr/m/n/10 dissimilarity []\T1/ptm/m/n/10 ob-ject or a []\T1/pcr/m/n/10 summary.dissimilarity []\T1/ptm/m/n/10 one for [2744] [2745] [2746] Overfull \hbox (54.78088pt too wide) in paragraph at lines 4290--4290 [] \T1/pcr/m/n/10 main = NULL, sub = NULL, xlab = expression("Silhouette w idth "* s[i]),[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 4292--4292 [] \T1/pcr/m/n/10 cex.names = par("cex.axis"), do.n.k = TRUE, do.clus.stat = TRUE, ...)[] [2747] [2748] Overfull \hbox (31.3804pt too wide) in paragraph at lines 4434--4434 []\T1/pcr/m/n/9 plot(si, col = c("red", "green", "blue", "purple"))# with clus ter-wise coloring[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 4443--4443 [] \T1/pcr/m/n/9 plot(silhouette(pam(ruspini, k=k)), main = paste("k = ",k), do.n.k=FALSE)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 4445--4445 [] \T1/pcr/m/n/9 outer = TRUE, font = par("font.main"), cex = par("cex.ma in")); frame()[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 4448--4448 []\T1/pcr/m/n/9 c6 <- c("tomato", "forest green", "dark blue", "purple2", "gol denrod4", "gray20")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 4450--4450 [] \T1/pcr/m/n/9 plot(silhouette(pam(ruspini, k=k)), main = paste("k = ",k), do.n.k=FALSE,[] [2749] Overfull \hbox (31.3804pt too wide) in paragraph at lines 4457--4457 []\T1/pcr/m/n/9 str(xc1k <- xclara[ sample(nrow(xclara), size = 1000) ,]) # ro wnames == indices[] [2750] [2751] [2752] [2753] [2754] [2755] Underfull \hbox (badness 10000) in paragraph at lines 4828--4834 []\T1/ptm/m/n/10 Our ver-sion of the []\T1/pcr/m/n/10 xclara []\T1/ptm/m/n/10 i s slightly more rounded than the one from Underfull \hbox (badness 10000) in paragraph at lines 4844--4846 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/pcr/m/n/10 xclara.dat\T1/ptm/m/n/10 ' in side Overfull \hbox (52.98038pt too wide) in paragraph at lines 4857--4857 []\T1/pcr/m/n/9 ## Visualization: Assuming groups are defined as {1:1000}, {10 01:2000}, {2001:3000} Overfull \hbox (9.78043pt too wide) in paragraph at lines 4859--4859 []\T1/pcr/m/n/9 p.ID <- c(78, 1411, 2535) ## PAM\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s medoid indices == pam(xclara, 3)$id.med[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4869--4869 [] \T1/pcr/m/n/9 ## We see 3 + 2 + 2 = 7 clear "outlier"s or "wrong group" o bservations:[] [2756] Overfull \hbox (20.58041pt too wide) in paragraph at lines 4873--4873 [] \T1/pcr/m/n/9 ## Apart from these, what are the robust ranges of indices? - - Robust range:[] [2757]) (./codetools-pkg.tex [2758] Chapter 21. Overfull \hbox (24.78088pt too wide) in paragraph at lines 16--16 [] \T1/pcr/m/n/10 suppressParamUnused = !all, suppressFundefMismatch = FALSE,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 17--17 [] \T1/pcr/m/n/10 suppressLocalUnused = FALSE, suppressNoLocalFun = !all,[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 18--18 [] \T1/pcr/m/n/10 skipWith = FALSE, suppressUndefined = dfltSuppress Undefined,[] [2759] Underfull \hbox (badness 10000) in paragraph at lines 65--70 []\T1/pcr/m/n/10 checkUsageEnv []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 checkUsage Package []\T1/ptm/m/n/10 are con-ve-nience func-tions that ap-ply [2760] Overfull \hbox (18.78088pt too wide) in paragraph at lines 118--118 []\T1/pcr/m/n/10 makeConstantFolder(..., leaf, handler, call, exit, isLocal, f oldable,[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 121--121 []\T1/pcr/m/n/10 makeUsageCollector(fun, ..., name, enterLocal, enterGlobal, e nterInternal,[] [2761] [2762] [2763]) (./foreign-pkg.tex [2764] Chapter 22. Underfull \hbox (badness 10000) in paragraph at lines 33--37 []\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o ut of a Data Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/ptm/m/n/10 Set in SAS Trans-port (XPORT) For-mat'' avail-able as [][]$\T1/p cr/m/n/10 https : / / support . Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/pcr/m/n/10 sas . com / content / dam / SAS / support / en / technical-[]pap ers / Overfull \hbox (74.28088pt too wide) in paragraph at lines 33--37 \T1/pcr/m/n/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[]s et-[]in-[]sas-[]transport-[]xport-[]format . [2765] Underfull \hbox (badness 1231) in paragraph at lines 67--70 []\T1/ptm/m/n/10 a char-ac-ter string with the name of the ARFF file to read fr om, or a [2766] [2767] Underfull \hbox (badness 3601) in paragraph at lines 234--242 []\T1/ptm/m/n/10 A data frame with at-tributes. These will in-clude []\T1/pcr/m /n/10 "datalabel"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "time.stamp"[]\T1/ptm/m/n/ 10 , [2768] Overfull \hbox (12.78088pt too wide) in paragraph at lines 292--292 []\T1/pcr/m/n/10 read.epiinfo(file, read.deleted = FALSE, guess.broken.dates = FALSE, [2769] [2770] [2771] Overfull \hbox (48.78088pt too wide) in paragraph at lines 458--458 [] \T1/pcr/m/n/10 trim_values = TRUE, reencode = NA, use.missings = t o.data.frame,[] [2772] Overfull \hbox (30.78088pt too wide) in paragraph at lines 459--459 [] \T1/pcr/m/n/10 sub = ".", add.undeclared.levels = c("sort", "appen d", "no"),[] Underfull \hbox (badness 2846) in paragraph at lines 502--511 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer-ent lev- Underfull \hbox (badness 3746) in paragraph at lines 502--511 \T1/ptm/m/n/10 els. For []\T1/pcr/m/n/10 "append" []\T1/ptm/m/n/10 (the de-faul t), the first orig-i-nal value la-bel is Underfull \hbox (badness 2269) in paragraph at lines 502--511 \T1/ptm/m/n/10 kept while fur-ther du-pli-cated la-bels are re-named to []\T1/p cr/m/n/10 paste0(label, Underfull \hbox (badness 10000) in paragraph at lines 512--515 []\T1/ptm/m/n/10 character: the in-fix used for la-bels of fac-tor lev-els with du- Underfull \hbox (badness 10000) in paragraph at lines 512--515 \T1/ptm/m/n/10 pli-cated value la-bels in SPSS (de-fault []\T1/pcr/m/n/10 "_dup licated_"[]\T1/ptm/m/n/10 ) if [2773] Underfull \hbox (badness 10000) in paragraph at lines 546--554 []\T1/ptm/m/n/10 URL [][]$\T1/pcr/m/n/10 https : / / learn . microsoft . com / en-[]us / windows / win32 / intl / Underfull \hbox (badness 7613) in paragraph at lines 564--570 []\T1/ptm/m/n/10 There may be at-tributes []\T1/pcr/m/n/10 "label.table" []\T1/ ptm/m/n/10 and []\T1/pcr/m/n/10 "variable.labels"[]\T1/ptm/m/n/10 . At-tribute [2774] Overfull \hbox (20.58041pt too wide) in paragraph at lines 619--619 []\T1/pcr/m/n/9 ### hence may need some special treatment with appropriate arg ument settings.[] Overfull \hbox (112.38031pt too wide) in paragraph at lines 620--620 []\T1/pcr/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2775] Overfull \hbox (9.78043pt too wide) in paragraph at lines 653--653 []\T1/pcr/m/n/9 ## Long Strings (>255 chars) are imported in consecutive separ ate variables[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 657--657 []\T1/pcr/m/n/9 cat.long.string <- function(x, w=70) cat(paste(strwrap(x, widt h=w), "\n"))[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 664--664 []\T1/pcr/m/n/9 long.string <- apply(x[,c("string_500", "STRIN0")], 1, paste, collapse="")[] [2776] [2777] Underfull \hbox (badness 10000) in paragraph at lines 808--809 Overfull \hbox (4.38043pt too wide) in paragraph at lines 818--818 []\T1/pcr/m/n/9 iris.s <- read.systat(system.file("files/Iris.syd", package="f oreign")[1])[] [2778] Underfull \hbox (badness 10000) in paragraph at lines 865--869 []\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o ut of a Data Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/ptm/m/n/10 Set in SAS Trans-port (XPORT) For-mat'' avail-able at [][]$\T1/p cr/m/n/10 https : / / support . Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/pcr/m/n/10 sas . com / content / dam / SAS / support / en / technical-[]pap ers / Overfull \hbox (74.28088pt too wide) in paragraph at lines 865--869 \T1/pcr/m/n/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[]s et-[]in-[]sas-[]transport-[]xport-[]format . [2779] Overfull \hbox (24.78088pt too wide) in paragraph at lines 896--896 [] \T1/pcr/m/n/10 data.restore(file, print = FALSE, verbose = FALSE, env = .G lobalEnv) [2780] Overfull \hbox (0.78088pt too wide) in paragraph at lines 960--960 []\T1/pcr/m/n/10 write.arff(x, file, eol = "\n", relation = deparse(substitute (x))) [2781] [2782] Underfull \hbox (badness 10000) in paragraph at lines 1072--1073 [][][]$\T1/pcr/m/n/10 https : / / www . clicketyclick . dk / databases / xbase / format / data _ types . Overfull \hbox (24.78088pt too wide) in paragraph at lines 1108--1108 [] \T1/pcr/m/n/10 convert.factors = c("labels", "string", "numeric", "codes"))[] [2783] [2784] Underfull \hbox (badness 10000) in paragraph at lines 1265--1271 []\T1/ptm/m/n/10 The work for this func-tion is done by []\T1/pcr/m/n/10 foreig n:::writeForeignStata[]\T1/ptm/m/n/10 , [2785] Underfull \hbox (badness 2088) in paragraph at lines 1291--1294 []\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 package="SPSS"[]\T1/ptm/m/n/10 , as a sid e ef-fect, the dec-i-mal in-di-ca-tor is al-ways set by []\T1/pcr/m/n/10 SET [2786]) (./lattice-pkg.tex Chapter 23. [2787] Underfull \hbox (badness 2073) in paragraph at lines 114--118 \T1/ptm/m/n/10 pro-vide a holis-tic in-tro-duc-tion to the Trel-lis paradigm: [ ][]$\T1/pcr/m/n/10 http : / / web . archive . org / Underfull \hbox (badness 10000) in paragraph at lines 114--118 \T1/pcr/m/n/10 web / 20081020164041 / http : / / cm . bell-[]labs . com / cm / ms / departments / sia / [2788] [2789] Overfull \hbox (12.78088pt too wide) in paragraph at lines 288--288 [] \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le vels"),[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 292--292 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default .xyplot"),[] [2790] Overfull \hbox (42.78088pt too wide) in paragraph at lines 303--303 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defaul t.dotplot"),[] Overfull \hbox (54.78088pt too wide) in paragraph at lines 313--313 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defau lt.barchart"),[] Overfull \hbox (66.78088pt too wide) in paragraph at lines 324--324 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defa ult.stripplot"),[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 348--348 [] \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le vels"),[] Underfull \vbox (badness 10000) has occurred while \output is active [2791] Overfull \hbox (30.78088pt too wide) in paragraph at lines 352--352 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default .bwplot"),[] [2792] [2793] [2794] Underfull \hbox (badness 1221) in paragraph at lines 655--658 []\T1/ptm/m/n/10 A log-i-cal, or a list con-tain-ing com-po-nents to be used as ar-gu-ments to [2795] [2796] [2797] [2798] Underfull \hbox (badness 2005) in paragraph at lines 988--1000 []\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether the un-used lev-els of fac-tors will be Underfull \hbox (badness 1199) in paragraph at lines 988--1000 \T1/ptm/m/n/10 some-times ap-pro-pri-ate to sup-press drop-ping to pre-serve a use-ful lay-out. [2799] [2800] Underfull \hbox (badness 1661) in paragraph at lines 1101--1107 []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 y []\T1/ptm/m/n/10 sho uld be num-bers be-tween 0 and 1, giv-ing co-or-di-nates [2801] Underfull \hbox (badness 1097) in paragraph at lines 1227--1229 []\T1/ptm/m/n/10 Logical flag, whether leg-end should have a Underfull \hbox (badness 1917) in paragraph at lines 1241--1242 []\T1/ptm/m/n/10 Space be-tween col-umn blocks, in ad-di-tion to [2802] [2803] [2804] Underfull \hbox (badness 1540) in paragraph at lines 1476--1482 []\T1/ptm/m/n/10 A list con-tain-ing pos-si-ble ar-gu-ments to [][][]\T1/pcr/m/ n/10 plot.trellis[][][][]\T1/ptm/m/n/10 , [2805] Underfull \hbox (badness 10000) in paragraph at lines 1563--1580 [][][]\T1/pcr/m/n/10 panel.dotplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 panel.stripplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 panel.superpose[] [][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 panel.loess[][][][]\T1/ptm/m/n/10 , [2806] Underfull \vbox (badness 10000) has occurred while \output is active [2807] Overfull \hbox (36.7804pt too wide) in paragraph at lines 1651--1651 [] \T1/pcr/m/n/9 text = list(lab = as.character(unique(Orchar dSprays$rowpos))),[] [2808] Underfull \hbox (badness 2012) in paragraph at lines 1705--1707 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][][]\T1/pcr/m/n/10 xyplot[] [][][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1735--1739 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to Underfull \hbox (badness 10000) in paragraph at lines 1752--1755 []\T1/ptm/m/n/10 style set-tings be-yond the stan-dard []\T1/pcr/m/n/10 col[]\T 1/ptm/m/n/10 , []\T1/pcr/m/n/10 lty[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lwd[]\T1 /ptm/m/n/10 , etc; see [2809] Underfull \hbox (badness 10000) in paragraph at lines 1804--1806 []\T1/ptm/m/n/10 Gabor Grothendieck, Achim Zeileis, Deep-ayan Sarkar and Fe-lix An-drews [2810] [2811] [2812] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2045--2045 [] \T1/pcr/m/n/10 auto.key = lattice.getOption("default.args")$auto .key,[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2058--2058 [] \T1/pcr/m/n/10 lattice.getOption("prepanel.default.densitypl ot"),[] Underfull \vbox (badness 10000) has occurred while \output is active [2813] Underfull \hbox (badness 10000) in paragraph at lines 2137--2140 []\T1/ptm/m/n/10 When []\T1/pcr/m/n/10 breaks []\T1/ptm/m/n/10 is un-spec-i-fie d, the value of Underfull \hbox (badness 1320) in paragraph at lines 2137--2140 []\T1/pcr/m/n/10 lattice.getOption("histogram.breaks") []\T1/ptm/m/n/10 is firs t checked. If [2814] [2815] [2816] Overfull \hbox (12.78088pt too wide) in paragraph at lines 2342--2342 [] \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le vels"),[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 2346--2346 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default .qqmath"),[] [2817] [2818] [2819] [2820] [2821] Overfull \hbox (60.78088pt too wide) in paragraph at lines 2702--2702 [] \T1/pcr/m/n/10 panel = if (useRaster) lattice.getOption("panel.lev elplot.raster")[] [2822] Overfull \hbox (0.78088pt too wide) in paragraph at lines 2734--2734 [] \T1/pcr/m/n/10 lattice.getOption("prepanel.default.contourpl ot"),[] Underfull \vbox (badness 10000) has occurred while \output is active [2823] Underfull \hbox (badness 2913) in paragraph at lines 2813--2818 []\T1/ptm/m/n/10 Optional vec-tors of val-ues that de-fine the grid when []\T1/ pcr/m/n/10 x []\T1/ptm/m/n/10 is a ma-trix. Underfull \hbox (badness 3058) in paragraph at lines 2813--2818 []\T1/pcr/m/n/10 row.values []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 column.values []\T1/ptm/m/n/10 must have the same lengths as [2824] [2825] Underfull \hbox (badness 6758) in paragraph at lines 2941--2945 []\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether the col-orkey should be Underfull \hbox (badness 7576) in paragraph at lines 2941--2945 \T1/ptm/m/n/10 ren-dered as a raster im-age us-ing [][][]\T1/pcr/m/n/10 grid.ra ster[][][][]\T1/ptm/m/n/10 . See also Underfull \hbox (badness 10000) in paragraph at lines 2947--2949 []\T1/ptm/m/n/10 Logical flag, passed to [][][]\T1/pcr/m/n/10 rasterGrob[][][] []\T1/ptm/m/n/10 when Underfull \hbox (badness 7256) in paragraph at lines 2984--2984 []\T1/pcr/m/n/10 allow.multiple[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 outer[]\T1/p tm/m/n/10 , []\T1/pcr/m/n/10 prepanel[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 scales []\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 gr oups[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1609) in paragraph at lines 2997--3003 []\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether raster rep-re-sen-ta-ti ons should be used, Underfull \hbox (badness 2772) in paragraph at lines 2997--3003 \T1/ptm/m/n/10 both for the false color im-age and the color key (if present). Ef- Underfull \hbox (badness 1400) in paragraph at lines 2997--3003 \T1/ptm/m/n/10 fec-tively, set-ting this to []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n /10 changes the de-fault panel func-tion from Underfull \hbox (badness 2486) in paragraph at lines 3021--3025 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2826] [2827] Overfull \hbox (24.78088pt too wide) in paragraph at lines 3126--3126 [] \T1/pcr/m/n/10 xlim = if (is.factor(x)) levels(x) else range(x, finite = TRUE),[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 3127--3127 [] \T1/pcr/m/n/10 ylim = if (is.factor(y)) levels(y) else range(y, finite = TRUE),[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 3128--3128 [] \T1/pcr/m/n/10 zlim = if (is.factor(z)) levels(z) else range(z, finite = TRUE),[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 3139--3139 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default. cloud"),[] [2828] Overfull \hbox (66.78088pt too wide) in paragraph at lines 3154--3154 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defa ult.wireframe"),[] [2829] Underfull \hbox (badness 2913) in paragraph at lines 3219--3224 []\T1/ptm/m/n/10 Optional vec-tors of val-ues that de-fine the grid when []\T1/ pcr/m/n/10 x []\T1/ptm/m/n/10 is a ma-trix. Underfull \hbox (badness 3058) in paragraph at lines 3219--3224 []\T1/pcr/m/n/10 row.values []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 column.values []\T1/ptm/m/n/10 must have the same lengths as Underfull \hbox (badness 2418) in paragraph at lines 3225--3225 []\T1/pcr/m/n/10 allow.multiple[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 outer[]\T1/p tm/m/n/10 , []\T1/pcr/m/n/10 auto.key[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 prepan el[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 groups[]\T1/ptm/m/n/10 , [2830] [2831] [2832]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.parallel}) has been already used, duplicate ignored \relax l.3506 \aliasA{parallel}{B\_08\_splom}{parallel} [2833] Overfull \hbox (18.78088pt too wide) in paragraph at lines 3548--3548 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default. splom"),[] Overfull \hbox (54.78088pt too wide) in paragraph at lines 3571--3571 [] \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defau lt.parallel"),[] Underfull \vbox (badness 10000) has occurred while \output is active [2834] [2835] [2836] [2837] [2838] Overfull \hbox (18.78088pt too wide) in paragraph at lines 3906--3906 []\T1/pcr/m/n/10 oneway(formula, data, location=mean, spread=function(x) sqrt( var(x))) [2839] [2840] Underfull \hbox (badness 2277) in paragraph at lines 3992--3996 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings by Underfull \hbox (badness 2435) in paragraph at lines 3992--3996 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2841] Overfull \hbox (120.78088pt too wide) in paragraph at lines 4089--4089 [] \T1/pcr/m/n/10 symbol = palette.colors(palette = "Okabe-Ito") [c(6, 2, 4, 7, 3, 5, 8)],[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 4091--4091 [] \T1/pcr/m/n/10 region = hcl.colors(14, palette = "YlGnBu", re v = TRUE),[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 4098--4098 [] \T1/pcr/m/n/10 reference = "gray90", bg = "transparent", fg = " black",[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 4099--4099 [] \T1/pcr/m/n/10 strip.bg = rep("gray95", 7), strip.fg = rep("gra y70", 7),[] [2842] [2843] Overfull \hbox (18.78088pt too wide) in paragraph at lines 4242--4242 []\T1/pcr/m/n/10 trellis.par.set(name, value, ..., theme, warn = TRUE, strict = FALSE) Underfull \hbox (badness 1173) in paragraph at lines 4251--4255 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in [2844] Underfull \hbox (badness 3219) in paragraph at lines 4278--4280 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when Underfull \hbox (badness 1728) in paragraph at lines 4295--4299 []\T1/pcr/m/n/10 theme[]\T1/ptm/m/n/10 ). These are used to mod-ify the cur-ren t set-tings (ob-tained by [2845] Underfull \hbox (badness 5161) in paragraph at lines 4360--4364 []\T1/ptm/m/n/10 The ac-tual list of the com-po-nents in []\T1/pcr/m/n/10 trell is.settings []\T1/ptm/m/n/10 has not been fi-nal-ized, Underfull \hbox (badness 4913) in paragraph at lines 4360--4364 \T1/ptm/m/n/10 so I'm not at-tempt-ing to list them here. The cur-rent value ca n be ob-tained by [2846] Underfull \hbox (badness 1067) in paragraph at lines 4478--4488 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. []\T1/pcr/m/n/10 col []\T1/ptm/m/n/ 10 is used for com-po-nents []\T1/pcr/m/n/10 "plot.symbol"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4478--4488 []\T1/pcr/m/n/10 "plot.line"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "plot.polygon"[ ]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "superpose.symbol"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1735) in paragraph at lines 4478--4488 []\T1/pcr/m/n/10 "superpose.line"[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 "super pose.polygon"[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 col.points Underfull \hbox (badness 10000) in paragraph at lines 4478--4488 []\T1/ptm/m/n/10 over-rides []\T1/pcr/m/n/10 col[]\T1/ptm/m/n/10 , but is used only for []\T1/pcr/m/n/10 "plot.symbol" []\T1/ptm/m/n/10 and Underfull \hbox (badness 5231) in paragraph at lines 4478--4488 []\T1/pcr/m/n/10 "superpose.symbol"[]\T1/ptm/m/n/10 . Sim-i-larly, []\T1/pcr/m/ n/10 col.line []\T1/ptm/m/n/10 over-rides []\T1/pcr/m/n/10 col []\T1/ptm/m/n/10 for [2847] Underfull \hbox (badness 1701) in paragraph at lines 4503--4506 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents []\T1/pcr/m/n/10 pl ot.symbol[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 plot.polygon[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4506--4508 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents []\T1/pcr/m/n/10 plot.polygon []\T1/ptm/m/n/10 and [2848] Underfull \hbox (badness 2932) in paragraph at lines 4649--4654 []\T1/pcr/m/n/10 auto.key[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 aspect[]\T1/ptm/m/ n/10 , []\T1/pcr/m/n/10 between[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 grid[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 skip[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/ ptm/m/n/10 , []\T1/pcr/m/n/10 xscale.components[]\T1/ptm/m/n/10 , [2849] [2850] [2851] [2852] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4925--4925 []\T1/pcr/m/n/9 p12 <- densityplot( ~ height | voice.part, data = singer, xlab = "Height")[] [2853] [2854] Underfull \hbox (badness 1558) in paragraph at lines 5048--5048 []\T1/pcr/m/n/10 main[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 page[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 par.strip.text[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 prepanel[]\ T1/ptm/m/n/10 , []\T1/pcr/m/n/10 scales[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 skip []\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1270) in paragraph at lines 5048--5048 []\T1/pcr/m/n/10 xscale.components[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 yscale.co mponents[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 axis[]\T1/ptm/m/n/10 , []\T1/pcr/m/ n/10 par.settings[]\T1/ptm/m/n/10 , Underfull \vbox (badness 1092) has occurred while \output is active [2855] Underfull \hbox (badness 10000) in paragraph at lines 5105--5108 []\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 trellis[]\T1/ptm/m/n/10 , by de-fault plot-ted by []\T1/pcr/m/n/10 print.trellis[]\T1/ptm/m/n/10 . [2856] [2857] Underfull \hbox (badness 1442) in paragraph at lines 5232--5235 []\T1/pcr/m/n/10 plot.shingle []\T1/ptm/m/n/10 dis-plays the ranges of shin-gle s via rect-an-gles. []\T1/pcr/m/n/10 print.shingle []\T1/ptm/m/n/10 and [2858] [2859] [2860] [2861] [2862] Underfull \hbox (badness 3646) in paragraph at lines 5571--5574 [][][]\T1/pcr/m/n/10 Lattice[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 draw. key[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 trellis.par.get[][][][]\T1/ptm /m/n/10 , and [][][]\T1/pcr/m/n/10 xyplot[][][][]\T1/ptm/m/n/10 , specif-i-call y the en-try for Overfull \hbox (36.78088pt too wide) in paragraph at lines 5601--5601 [] \T1/pcr/m/n/10 bg = trellis.par.get("strip.background")$col[wh ich.given],[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 5602--5602 [] \T1/pcr/m/n/10 fg = trellis.par.get("strip.shingle")$col[which .given],[] [2863] Underfull \hbox (badness 10000) in paragraph at lines 5684--5687 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 2103) in paragraph at lines 5684--5687 []\T1/pcr/m/n/10 horizontal=FALSE []\T1/ptm/m/n/10 is use-ful for strips on the left of pan-els us-ing [2864] Underfull \hbox (badness 1635) in paragraph at lines 5710--5715 []\T1/pcr/m/n/10 strip.default []\T1/ptm/m/n/10 is called for its side-effect, which is to draw a strip ap-pro-pri-ate for [2865] [2866] Overfull \hbox (0.78088pt too wide) in paragraph at lines 5861--5861 []\T1/pcr/m/n/10 panel.identify.qqmath(x, distribution, groups, subscripts, la bels,[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 5875--5875 []\T1/pcr/m/n/10 panel.link.splom(threshold = 18, verbose = getOption("verbose "), ...)[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 5876--5876 []\T1/pcr/m/n/10 panel.brush.splom(threshold = 18, verbose = getOption("verbos e"), ...)[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 5879--5879 []\T1/pcr/m/n/10 trellis.vpname(name = c("position", "split", "split.location" , "toplevel",[] Overfull \hbox (48.78088pt too wide) in paragraph at lines 5882--5882 [] \T1/pcr/m/n/10 "xlab", "ylab", "xlab.top", "ylab.rig ht", "page"),[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 5884--5884 [] \T1/pcr/m/n/10 side = c("left", "top", "right", "bottom", "in side"),[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 5890--5890 [] \T1/pcr/m/n/10 which.given = lattice.getStatus("current.whi ch.given",[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 5891--5891 [] \T1/pcr/m/n/10 prefix = pre fix),[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 5892--5892 [] \T1/pcr/m/n/10 which.panel = lattice.getStatus("current.whi ch.panel",[] [2867] Overfull \hbox (0.78088pt too wide) in paragraph at lines 5893--5893 [] \T1/pcr/m/n/10 prefix = pre fix),[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 5894--5894 [] \T1/pcr/m/n/10 column = lattice.getStatus("current.focus.co lumn",[] Underfull \hbox (badness 10000) in paragraph at lines 5910--5912 []\T1/ptm/m/n/10 variables defin-ing the con-tents of the panel. In the case of Underfull \hbox (badness 2376) in paragraph at lines 5921--5923 []\T1/ptm/m/n/10 an op-tional vec-tor of la-bels as-so-ci-ated with each point. De-faults to [2868] Underfull \hbox (badness 2538) in paragraph at lines 6045--6049 \T1/ptm/m/n/10 For []\T1/pcr/m/n/10 trellis.focus[]\T1/ptm/m/n/10 , the de-faul t is []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 in in-ter-ac-tive mode, and Underfull \hbox (badness 4205) in paragraph at lines 6056--6063 []\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 panel.identify.qqmath[]\T1/ptm/m/n/10 , e x-tra pa-ram-e-ters are passed on to Underfull \hbox (badness 4792) in paragraph at lines 6056--6063 []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 trellis.switchFocus[]\T1/ptm/m/n/10 , the se are used (in com-bi-na-tion with [2869] [2870] Underfull \hbox (badness 10000) in paragraph at lines 6209--6213 [][][]\T1/pcr/m/n/10 identify[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Latt ice[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.trellis[][][][]\T1/ptm/m /n/10 , [][][]\T1/pcr/m/n/10 trellis.currentLayout[][][][]\T1/ptm/m/n/10 , [2871] Underfull \vbox (badness 10000) has occurred while \output is active [2872] [2873] Underfull \hbox (badness 4242) in paragraph at lines 6356--6361 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- [2874] [2875] Underfull \hbox (badness 3601) in paragraph at lines 6472--6477 []\T1/ptm/m/n/10 Creates Box and Whisker plot of []\T1/pcr/m/n/10 x []\T1/ptm/m /n/10 for ev-ery level of []\T1/pcr/m/n/10 y []\T1/ptm/m/n/10 (or the other way round Underfull \hbox (badness 2486) in paragraph at lines 6472--6477 \T1/ptm/m/n/10 if []\T1/pcr/m/n/10 horizontal=FALSE[]\T1/ptm/m/n/10 ). By de-fa ult, the ac-tual box-plot statis-tics are cal-cu-lated us-ing [2876] Overfull \hbox (60.78088pt too wide) in paragraph at lines 6558--6558 [] \T1/pcr/m/n/10 shade.colors.palette = trellis.par.get("shade.co lors")$palette,[] [2877] [2878] [2879] Underfull \hbox (badness 10000) in paragraph at lines 6757--6761 []\T1/ptm/m/n/10 All three num-bers should be be-tween 0 and 1. The Underfull \hbox (badness 10000) in paragraph at lines 6762--6764 []\T1/ptm/m/n/10 numeric, be-tween 0 and 1, giv-ing a min-i-mum sat-u-ra-tion i n [2880] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6858--6858 [] \T1/pcr/m/n/9 shade.colors.palette = makeShadePalette(hcl.colors(1 0, "Inferno"),[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 6861--6861 [] \T1/pcr/m/n/9 shade.colors.palette = makeShadePalette(hcl.colors(1 0, "Dark Mint"),[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 6864--6864 [] \T1/pcr/m/n/9 shade.colors.palette = makeShadePalette(hcl.colors(1 0, "Harmonic"),[] [2881] [2882] [2883] [2884] [2885] Underfull \hbox (badness 1320) in paragraph at lines 7225--7232 []\T1/pcr/m/n/10 panel.levelplot.raster []\T1/ptm/m/n/10 is an al-ter-na-tive p anel func-tion that uses the raster draw- Underfull \hbox (badness 1715) in paragraph at lines 7225--7232 \T1/ptm/m/n/10 can only ren-der data on an eq-ui-s-paced grid), but can be more ef-fi-cient. When us-ing [2886] [2887] Overfull \hbox (0.78088pt too wide) in paragraph at lines 7300--7300 [] \T1/pcr/m/n/10 varname = NULL, limits, at = NULL, labels = NULL,[] Underfull \hbox (badness 10000) in paragraph at lines 7330--7334 []\T1/ptm/m/n/10 The panel func-tion used for the di-ag-o-nals. See ar-gu-ments to Underfull \hbox (badness 1584) in paragraph at lines 7330--7334 []\T1/pcr/m/n/10 diag.panel.splom []\T1/ptm/m/n/10 to know what ar-gu-ments thi s func-tion is passed [2888] [2889] Underfull \hbox (badness 10000) in paragraph at lines 7435--7438 \T1/ptm/m/n/10 and []\T1/pcr/m/n/10 diag.panel []\T1/ptm/m/n/10 from []\T1/pcr/ m/n/10 panel.pairs[]\T1/ptm/m/n/10 . Cur-rently ig-nored by Overfull \hbox (101.58032pt too wide) in paragraph at lines 7460--7460 [] \T1/pcr/m/n/9 function(i,j) hcl.colors(11)[i+j-1]) ## rainbow( 11, start=.12, end=.5)[i+j-1])[] [2890] [2891] Underfull \hbox (badness 2012) in paragraph at lines 7601--7604 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2892] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7647--7647 [] \T1/pcr/m/n/9 panel.qqmath(..., f.value = ppoints(100), ta ils.n = 50))[] [2893] [2894] Underfull \hbox (badness 1939) in paragraph at lines 7836--7844 []\T1/pcr/m/n/10 "lm" []\T1/ptm/m/n/10 adds a lin-ear re-gres-sion line (same a s [][][]\T1/pcr/m/n/10 panel.lmline[][][][]\T1/ptm/m/n/10 , ex-cept Underfull \hbox (badness 1163) in paragraph at lines 7836--7844 \T1/ptm/m/n/10 for de-fault graph-i-cal pa-ram-e-ters). []\T1/pcr/m/n/10 "loess " []\T1/ptm/m/n/10 adds a loess fit (same as [2895] Underfull \hbox (badness 2772) in paragraph at lines 7859--7862 []\T1/ptm/m/n/10 Most gen-er-ally, []\T1/pcr/m/n/10 grid []\T1/ptm/m/n/10 can b e a list of ar-gu-ments to be sup-plied to [2896] Overfull \hbox (25.98041pt too wide) in paragraph at lines 7930--7930 [] \T1/pcr/m/n/9 ylab = list(c("horizontal=TRUE", "horizontal=FALSE"), y = c(1/6, 4/6)),[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 7940--7940 [] \T1/pcr/m/n/9 scales = list(alternating = c(0, 2), tck = c(0, 0.7), d raw = FALSE),[] [2897] Overfull \hbox (12.78088pt too wide) in paragraph at lines 8025--8025 [] \T1/pcr/m/n/10 font, fontfamily, fontface, cex, ..., identifier, nam e.type)[] Overfull \hbox (84.78088pt too wide) in paragraph at lines 8044--8044 [] \T1/pcr/m/n/10 adj = c(0.5, 0.5), pos = NULL, offset = 0.5, ..., ide ntifier, name.type)[] Underfull \vbox (badness 10000) has occurred while \output is active [2898] Underfull \hbox (badness 6428) in paragraph at lines 8092--8092 []\T1/pcr/m/n/10 col[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 alpha[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lty[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lwd[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 fill[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pch[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 cex[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lineheight[]\T1/ptm/m/n /10 , []\T1/pcr/m/n/10 font[]\T1/ptm/m/n/10 , [2899] Overfull \hbox (63.78036pt too wide) in paragraph at lines 8180--8180 []\T1/pcr/m/n/9 xyplot(y ~ x, d, panel = panel.rect, col = 4, alpha = 0.5, wid th = 0.1, height = 0.1)[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 8187--8187 []\T1/pcr/m/n/9 xyplot(y ~ x, d, panel = panel.polygon, col = 4, alpha = 0.5, rule = "evenodd")[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 8189--8189 []\T1/pcr/m/n/9 ## Example adapted from https://journal.r-project.org/articles /RJ-2012-017/[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 8193--8193 []\T1/pcr/m/n/9 xyplot(y ~ x, data = d, panel = panel.polygon, rule = "none", col = "grey")[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 8194--8194 []\T1/pcr/m/n/9 xyplot(y ~ x, data = d, panel = panel.polypath, rule = "windin g", col = "grey")[] [2900] Overfull \hbox (31.3804pt too wide) in paragraph at lines 8195--8195 []\T1/pcr/m/n/9 xyplot(y ~ x, data = d, panel = panel.polypath, rule = "evenod d", col = "grey")[] Overfull \hbox (66.78088pt too wide) in paragraph at lines 8254--8254 []\T1/pcr/m/n/10 panel.grid(h=3, v=3, col, col.line, lty, lwd, x, y, ..., iden tifier = "grid")[] [2901] Underfull \hbox (badness 1436) in paragraph at lines 8309--8315 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for [2902] [2903] Overfull \hbox (42.18039pt too wide) in paragraph at lines 8439--8439 [] \T1/pcr/m/n/9 panel.superpose(x, y, ..., panel.groups = panel.ave rage, grid = FALSE,[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 8453--8453 [] \T1/pcr/m/n/9 args = list(mean = mean(x), sd = sd(x)), ...)[] [2904] [2905] [2906] [2907] [2908] [2909] Underfull \hbox (badness 10000) in paragraph at lines 8878--8881 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to []\T1/pcr/m/n/10 panel.super pose Underfull \hbox (badness 10000) in paragraph at lines 8878--8881 []\T1/ptm/m/n/10 from []\T1/pcr/m/n/10 panel.superpose.2[]\T1/ptm/m/n/10 , and to []\T1/pcr/m/n/10 panel.groups []\T1/ptm/m/n/10 from [2910] [2911] Overfull \hbox (24.78088pt too wide) in paragraph at lines 9053--9053 []\T1/pcr/m/n/10 prepanel.default.bwplot(x, y, horizontal, nlevels, origin, st ack, ...)[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 9054--9054 []\T1/pcr/m/n/10 prepanel.default.histogram(x, breaks, equal.widths, type, nin t, ...)[] [2912] Overfull \hbox (30.78088pt too wide) in paragraph at lines 9066--9066 []\T1/pcr/m/n/10 prepanel.default.densityplot(x, darg, groups, weights, subscr ipts, ...)[] Underfull \hbox (badness 3118) in paragraph at lines 9085--9088 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. []\T1/pcr/m/n/10 type [ ]\T1/ptm/m/n/10 has a dif-fer-ent mean-ing in [2913] Underfull \hbox (badness 1515) in paragraph at lines 9160--9164 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2914] [2915] Underfull \hbox (badness 6316) in paragraph at lines 9266--9271 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in [2916] Overfull \hbox (47.58038pt too wide) in paragraph at lines 9376--9376 [] \T1/pcr/m/n/9 ans$bottom$labels$labels <- parse(text = ans$b ottom$labels$labels)[] [2917] [2918] Overfull \hbox (9.78043pt too wide) in paragraph at lines 9515--9515 []\T1/pcr/m/n/9 xyplot(sunspot.year ~ time(sunspot.year) | equal.count(time(su nspot.year)),[] [2919] Underfull \hbox (badness 1028) in paragraph at lines 9574--9578 \T1/pcr/m/n/10 condition []\T1/ptm/m/n/10 for 2-D, and []\T1/pcr/m/n/10 left, r ight.x, right.y, left.name, right.x.name, [2920] [2921] [2922] [2923] [2924] [2925] [2926] Underfull \hbox (badness 7238) in paragraph at lines 10018--10022 []\T1/ptm/m/n/10 Factor with lev-els []\T1/pcr/m/n/10 "Svansota"[]\T1/ptm/m/n/1 0 , []\T1/pcr/m/n/10 "No. 462"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Manchuria"[] \T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "No. 475"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 10018--10022 []\T1/pcr/m/n/10 "Velvet"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Peatland"[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 "Glabron"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "No. 4 57"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Wisconsin No. 38"[]\T1/ptm/m/n/10 , [2927] [2928] [2929]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been already used, duplicate ignored \relax l.10249 \aliasA{melanoma}{H\_melanoma}{melanoma} [2930] [2931] [2932] Underfull \hbox (badness 10000) in paragraph at lines 10411--10416 \T1/pcr/m/n/10 diseases[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Diabetes[]\T1/ptm/m/ n/10 , []\T1/pcr/m/n/10 Flu and pneumonia[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 He art disease[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Lower Overfull \hbox (9.78043pt too wide) in paragraph at lines 10484--10484 [] \T1/pcr/m/n/9 par.settings = simpleTheme(pch = 16), auto.key = list( columns = 2),[] [2933] [2934]) (./mgcv-pkg.tex Chapter 24. [2935] [2936] Overfull \hbox (6.78088pt too wide) in paragraph at lines 160--160 []\T1/pcr/m/n/10 bam(formula,family=gaussian(),data=list(),weights=NULL,subset =NULL, Overfull \hbox (18.78088pt too wide) in paragraph at lines 163--163 [] \T1/pcr/m/n/10 paraPen=NULL,chunk.size=10000,rho=0,AR.start=NULL,discret e=FALSE,[] [2937] Overfull \hbox (48.78088pt too wide) in paragraph at lines 165--165 [] \T1/pcr/m/n/10 coef=NULL,drop.unused.levels=TRUE,G=NULL,fit=TRUE,drop.in tercept=NULL,[] Underfull \hbox (badness 1142) in paragraph at lines 185--189 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 210--215 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2938] [2939] [2940] [2941] Underfull \hbox (badness 10000) in paragraph at lines 382--389 [][][]\T1/pcr/m/n/10 mgcv.parallel[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gamObject[][][][]\T1 /ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/ptm/m/n/10 , [][][]\T1 /pcr/m/n/10 smooth.terms[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 382--389 [][][]\T1/pcr/m/n/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1/ pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][] [][]predict. gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 382--389 [][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 g am.side[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.selection[][][][]\T1/p tm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.control[][][] [][]gam.check[][][][]\T1/ptm /m/n/10 , [2942] Overfull \hbox (4.38043pt too wide) in paragraph at lines 425--425 []\T1/pcr/m/n/9 system.time(b2 <- bam(y ~ s(x0,bs=bs,k=k)+s(x1,bs=bs,k=k)+s(x2 ,bs=bs,k=k)+[] [2943] [2944] [2945] Underfull \hbox (badness 2922) in paragraph at lines 637--638 []\T1/ptm/m/n/10 The link func-tion: one of []\T1/pcr/m/n/10 "logit"[]\T1/ptm/m /n/10 , []\T1/pcr/m/n/10 "probit"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cloglog" []\T1/ptm/m/n/10 and [2946] [2947] Underfull \hbox (badness 1406) in paragraph at lines 707--708 []\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t ing en-vi-ron-ment vari-able [2948] [2949] Underfull \hbox (badness 1158) in paragraph at lines 817--819 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion [2950] Underfull \hbox (badness 1259) in paragraph at lines 880--881 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2951] Underfull \vbox (badness 10000) has occurred while \output is active [2952] [2953] [2954] [2955] [2956] [2957] [2958] [2959] [2960] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1423--1423 []\T1/pcr/m/n/9 lines(b$family$data$tr,exp(-b$family$data$h + 2*b$family$data$ q^.5),col=2)[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1424--1424 []\T1/pcr/m/n/9 lines(b$family$data$tr,exp(-b$family$data$h - 2*b$family$data$ q^.5),col=2)[] [2961] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1441--1441 [] \T1/pcr/m/n/9 plot(b$y[oy],rs[oy,ii[1]],ylim=c(-3,3),type="l",ylab="scor e residuals",[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1453--1453 []\T1/pcr/m/n/9 bs <- gam(cbind(time,strata)~s(age,by=sex)+sex+s(nodes)+perfor +rx+obstruct[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1462--1462 []\T1/pcr/m/n/9 if (i==1) plot(bs$family$data$tr[ind],exp(-bs$family$data$h[in d]),type="l",[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1464--1464 [] \T1/pcr/m/n/9 lines(bs$family$data$tr[ind],exp(-bs$family$data$h[ind]) ,lwd=2,col=i)[] Underfull \vbox (badness 10000) has occurred while \output is active [2962] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1495--1495 []\T1/pcr/m/n/9 b <- gam(t~s(x0)+s(x1)+s(x2,k=15)+s(x3),family=cox.ph,weights= d,data=surv)[] [2963] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1578--1578 [] \T1/pcr/m/n/9 if (inter) prg <- txtProgressBar(min = 0, max = length(sid), initial = 0,[] [2964] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1589--1589 [] \T1/pcr/m/n/9 if (um[[et]][1]==max(tr)&&um[[status]][1]==1) um[[event]][ nrow(um)] <- 1[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 1628--1628 []\T1/pcr/m/n/9 pd <- data.frame(lapply(X=di,FUN=app,t=di$day,to=te)) ## inter polate to te[] [2965] [2966] [2967] [2968] [2969] [2970] [2971] [2972] [2973] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2116--2116 []\T1/pcr/m/n/9 bd <- bam(y~s(x0)+ s(x1) + s(x1,fac,bs="sz",k=5)+s(x2,k=20),di screte=TRUE)[] [2974] [2975] [2976] [2977] Overfull \hbox (30.78088pt too wide) in paragraph at lines 2352--2352 []\T1/pcr/m/n/10 fixDependence(X1,X2,tol=.Machine$double.eps^.5,rank.def=0,str ict=FALSE) [2978] [2979] Underfull \vbox (badness 2302) has occurred while \output is active [2980] [2981] [2982] [2983] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2757--2757 []\T1/pcr/m/n/10 gam(formula,family=gaussian(),data=list(),weights=NULL,subset =NULL,[] Underfull \hbox (badness 1728) in paragraph at lines 2769--2772 []\T1/ptm/m/n/10 A GAM for-mula, or a list of for-mu-lae (see [][][]\T1/pcr/m/n /10 formula.gam[][][] []\T1/ptm/m/n/10 and also [2984] Underfull \hbox (badness 1142) in paragraph at lines 2782--2786 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 2808--2814 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2985] [2986] Underfull \hbox (badness 1389) in paragraph at lines 2885--2886 []\T1/ptm/m/n/10 A list spec-i-fy-ing the neigh-bour-hood struc-ture for [][][] \T1/pcr/m/n/10 NCV[][][][]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 a []\T1/ptm/m/n/10 is the vec-tor Underfull \hbox (badness 2495) in paragraph at lines 2885--2886 []\T1/ptm/m/n/10 gives the points dropped for the neigh-bour-hood []\T1/pcr/m/n /10 j[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 d []\T1/ptm/m/n/10 is the vec-tor Underfull \hbox (badness 1558) in paragraph at lines 2885--2886 \T1/ptm/m/n/10 of in-dices of points to pre-dict, with cor-re-spond-ing end-poi nts []\T1/pcr/m/n/10 md[]\T1/ptm/m/n/10 . So [2987] Underfull \hbox (badness 1043) in paragraph at lines 2973--2979 \T1/ptm/m/n/10 eral lin-ear func-tion-als of smooths, via the sum-ma-tion con-v en-tion mech-a-nism de-scribed in [2988] [2989] Underfull \hbox (badness 10000) in paragraph at lines 3111--3117 [][][]\T1/pcr/m/n/10 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gamObject[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/pt m/m/n/10 , [][][]\T1/pcr/m/n/10 smooth.terms[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3111--3117 [][][]\T1/pcr/m/n/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1/ pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][] [][]predict. gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3111--3117 [][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 g am.side[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.selection[][][][]\T1/p tm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.control[][][] [][]gam.check[][][][]\T1/ptm /m/n/10 , [2990] Underfull \vbox (badness 10000) has occurred while \output is active [2991] Underfull \vbox (badness 10000) has occurred while \output is active [2992] Underfull \vbox (badness 10000) has occurred while \output is active [2993] [2994] [2995] Overfull \hbox (0.78088pt too wide) in paragraph at lines 3428--3428 []\T1/pcr/m/n/10 gam.control(nthreads=1,ncv.threads=1,irls.reg=0.0,epsilon = 1 e-07, Overfull \hbox (0.78088pt too wide) in paragraph at lines 3429--3429 [] \T1/pcr/m/n/10 maxit = 200,mgcv.tol=1e-7,mgcv.half=15, trace = F ALSE,[] [2996] [2997] [2998] [2999] [3000] Overfull \hbox (6.78088pt too wide) in paragraph at lines 3767--3767 [] \T1/pcr/m/n/10 mustart = NULL, offset = rep(0, nobs), U1 = diag(nco l(x)),[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 3770--3770 [] \T1/pcr/m/n/10 printWarn=TRUE,scoreType="REML",null.coef=rep(0,ncol (x)),[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 3771--3771 [] \T1/pcr/m/n/10 pearson.extra=0,dev.extra=0,n.true=-1,Sl=NULL,nei=NU LL,...)[] [3001] [3002] [3003] [3004] [3005] [3006] [3007] [3008] Underfull \hbox (badness 5189) in paragraph at lines 4249--4253 []\T1/ptm/m/n/10 Random ef-fects can be added to []\T1/pcr/m/n/10 gam []\T1/ptm /m/n/10 mod-els us-ing []\T1/pcr/m/n/10 s(...,bs="re") []\T1/ptm/m/n/10 terms ( see [3009] [3010] Overfull \hbox (9.78043pt too wide) in paragraph at lines 4366--4366 []\T1/pcr/m/n/9 rm1 <- gam(y ~ s(fac,bs="re")+s(x0)+s(x1)+s(x2)+s(x3),data=dat ,method="ML")[] Underfull \vbox (badness 10000) has occurred while \output is active [3011] [3012] [3013] Underfull \hbox (badness 1184) in paragraph at lines 4536--4540 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [3014] [3015] [3016] [3017] [3018] [3019] [3020] Overfull \hbox (25.98041pt too wide) in paragraph at lines 4982--4982 [] \T1/pcr/m/n/9 mod <- gam(y~s(a,bs="re")+s(b,bs="re")+s(a,b,bs="re")+s(x0,i d=1)+s(x1,id=1)+[] [3021] [3022] [3023] Overfull \hbox (18.78088pt too wide) in paragraph at lines 5132--5132 []\T1/pcr/m/n/10 gamlss.gH(X, jj, l1, l2, i2, l3 = 0, i3 = 0, l4 = 0, i4 = 0, d1b = 0, [3024] [3025] Underfull \hbox (badness 1142) in paragraph at lines 5259--5263 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [3026] Underfull \hbox (badness 10000) in paragraph at lines 5331--5340 []\T1/ptm/m/n/10 In the event of []\T1/pcr/m/n/10 lme []\T1/ptm/m/n/10 con-ver- gence fail-ures, con-sider mod-i-fy-ing [3027] [3028] Underfull \hbox (badness 5970) in paragraph at lines 5448--5454 [][][]\T1/pcr/m/n/10 magic[][][] []\T1/ptm/m/n/10 for an al-ter-na-tive for cor -re-lated data, [][][]\T1/pcr/m/n/10 te[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m /n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.gam[][][][]\T1/ptm /m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 1418) in paragraph at lines 5448--5454 [][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 n egbin[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 vis.gam[][][][]\T1/ptm/m/n/1 0 ,[][][]\T1/pcr/m/n/10 pdTens[][][][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 gamm4 [ ]\T1/ptm/m/n/10 ( [][]$\T1/pcr/m/n/10 https : / / cran . r-[]project . [3029] Underfull \vbox (badness 10000) has occurred while \output is active [3030] [3031] [3032] [3033] Underfull \hbox (badness 1577) in paragraph at lines 5797--5800 []\T1/ptm/m/n/10 If `outer' it-er-a-tion has been used to fit the model (see [] [][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 ar-gu-ment Underfull \hbox (badness 2181) in paragraph at lines 5804--5805 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [3034] [3035] [3036] [3037] [3038] [3039] [3040] [3041] [3042] Overfull \hbox (6.78088pt too wide) in paragraph at lines 6307--6307 []\T1/pcr/m/n/10 ginla(G,A=NULL,nk=16,nb=100,J=1,interactive=FALSE,integ=0,app rox=0) Underfull \hbox (badness 6708) in paragraph at lines 6313--6314 []\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by []\T1/pcr/m/n/10 gam(.. .,fit=FALSE) []\T1/ptm/m/n/10 or [3043] [3044] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6362--6362 [] \T1/pcr/m/n/9 ## example using a scale location model for the motorcycle d ata. A simple[] [3045] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6387--6387 [] \T1/pcr/m/n/9 } else lines(xg,predict(din,xg)$y,col=lcol[j],lwd=lwd[j] ,lty=lty[j])[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6416--6416 [] \T1/pcr/m/n/9 fv <- predict(b,se=TRUE) ## usual Gaussian approximation, fo r comparison[] [3046] [3047] [3048] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6538--6538 [] \T1/pcr/m/n/9 (1+exp(-10*(x[201:300]-.5)))-0.9933071) + z*(1-z)*5 + r norm(100)*.4[] [3049] [3050] [3051] [3052] [3053] Overfull \hbox (24.78088pt too wide) in paragraph at lines 6875--6875 []\T1/pcr/m/n/10 jagam(formula,family=gaussian,data=list(),file,weights=NULL,n a.action, Overfull \hbox (36.78088pt too wide) in paragraph at lines 6877--6877 []\T1/pcr/m/n/10 control=gam.control(),centred=TRUE,sp.prior = "gamma",diagona lize=FALSE)[] Underfull \hbox (badness 1142) in paragraph at lines 6898--6902 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [3054] [3055] [3056] [3057] [3058] [3059] [3060] Overfull \hbox (72.78088pt too wide) in paragraph at lines 7221--7221 []\T1/pcr/m/n/10 ldTweedie(y,mu=y,p=1.5,phi=1,rho=NA,theta=NA,a=1.001,b=1.999, all.derivs=FALSE) [3061] [3062] [3063] Underfull \vbox (badness 10000) has occurred while \output is active [3064] Underfull \vbox (badness 10000) has occurred while \output is active [3065] [3066] [3067] Overfull \hbox (66.78088pt too wide) in paragraph at lines 7630--7630 []\T1/pcr/m/n/10 lp(c,A,b,C=NULL,d=NULL,Bi=NULL,maxit=max(1000, nrow(A) * 10), phase1 = FALSE) [3068] [3069] Overfull \hbox (52.98038pt too wide) in paragraph at lines 7752--7752 []\T1/pcr/m/n/9 "The world is ruled by idiots because only an idiot would want to rule the world.",[] [3070] Overfull \hbox (36.78088pt too wide) in paragraph at lines 7779--7779 [] \T1/pcr/m/n/10 .Machine$double.eps^0.5),extra.rss=0,n.score=length(y), nthreads=1)[] [3071] [3072] [3073] [3074] [3075] [3076] [3077] Underfull \vbox (badness 1163) has occurred while \output is active [3078] [3079] [3080] Underfull \hbox (badness 1242) in paragraph at lines 8388--8389 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [3081] [3082] Overfull \hbox (20.58041pt too wide) in paragraph at lines 8475--8475 []\T1/pcr/m/n/9 ## Alternative, better scaling example, using the discrete opt ion with bam...[] [3083] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8538--8538 []\T1/pcr/m/n/9 for (sim in c(1,7)) { ## cycle over uncorrelated and correlate d covariates[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 8557--8557 [] \T1/pcr/m/n/9 dat1[[dname[i]]][dat1[[by.name]]] <- mean(dat1[[dname[i]]] ,na.rm=TRUE)[] [3084] [3085] [3086] [3087] [3088] [3089] [3090] [3091] [3092] [3093] [3094] [3095] [3096] [3097] [3098] [3099] [3100] [3101] [3102] [3103] [3104] Underfull \vbox (badness 10000) has occurred while \output is active [3105] [3106] Underfull \hbox (badness 10000) in paragraph at lines 9877--9880 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: []\T1/pcr/m/n/10 Dim .pdIndot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 coef.pdIdnot[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9877--9880 []\T1/pcr/m/n/10 corMatrix.pdIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 logDet.pd Idnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdConstruct.pdIdnot[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3118) in paragraph at lines 9877--9880 []\T1/pcr/m/n/10 pdFactor.pdIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdMatrix.p dIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 solve.pdIdnot[]\T1/ptm/m/n/10 , []\T1 /pcr/m/n/10 summary.pdIdnot[]\T1/ptm/m/n/10 . [3107] Underfull \hbox (badness 10000) in paragraph at lines 9933--9936 []\T1/ptm/m/n/10 These func-tions ([]\T1/pcr/m/n/10 pdTens[]\T1/ptm/m/n/10 , [] \T1/pcr/m/n/10 pdConstruct.pdTens[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdFactor.p dTens[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3108) in paragraph at lines 9933--9936 []\T1/pcr/m/n/10 pdMatrix.pdTens[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 coef.pdTens []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 summary.pdTens[]\T1/ptm/m/n/10 ) would n ot nor-mally be [3108] [3109] [3110] Overfull \hbox (18.78088pt too wide) in paragraph at lines 10153--10153 []\T1/pcr/m/n/10 plot(x,residuals=FALSE,rug=NULL,se=TRUE,pages=0,select=NULL,s cale=-1,[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 10157--10157 [] \T1/pcr/m/n/10 trans=I,seWithMean=FALSE,unconditional=FALSE,by.resi ds=FALSE,[] [3111] [3112] [3113] Underfull \hbox (badness 1629) in paragraph at lines 10313--10318 []\T1/ptm/m/n/10 just won't let you do it. In this case, the quick-est op-tion is some-times to clone the [3114] [3115] [3116] [3117] Overfull \hbox (84.78088pt too wide) in paragraph at lines 10525--10525 [] \T1/pcr/m/n/10 na.action=na.pass,cluster=NULL,discrete=TRUE,n.thread s=1,gc.level=0,...)[] Underfull \hbox (badness 1062) in paragraph at lines 10562--10566 []\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 type=="terms" []\T1/ptm/m/n/10 or []\T1/pc r/m/n/10 type="iterms" []\T1/ptm/m/n/10 then terms (smooth or para- [3118] [3119] Overfull \hbox (6.78088pt too wide) in paragraph at lines 10695--10695 [] \T1/pcr/m/n/10 na.action=na.pass,unconditional=FALSE,iterms.type=NUL L,...)[] [3120] [3121] [3122] Overfull \hbox (20.58041pt too wide) in paragraph at lines 10856--10856 []\T1/pcr/m/n/9 x1 <- seq(.2,.8,length=m1);x2 <- seq(.2,.8,length=m2) ## margi nal grid points[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 10857--10857 []\T1/pcr/m/n/9 df <- data.frame(x0=rep(.5,n),x1=rep(x1,m2),x2=rep(x2,each=m1) ,x3=rep(0,n))[] [3123] Underfull \vbox (badness 10000) has occurred while \output is active [3124] Underfull \vbox (badness 10000) has occurred while \output is active [3125] Overfull \hbox (9.78043pt too wide) in paragraph at lines 10996--10996 [] \T1/pcr/m/n/9 Xi[,(i-1)*9+1:9+1] <- Xp[,(i-1)*9+1:9+1] ## Xi%*%coef(b) = s mooth deriv i[] Underfull \hbox (badness 1205) in paragraph at lines 11034--11035 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 11034--11035 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 11040--11045 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [3126] [3127] Underfull \hbox (badness 1205) in paragraph at lines 11124--11125 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 11124--11125 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [3128] Underfull \hbox (badness 10000) in paragraph at lines 11193--11196 []\T1/ptm/m/n/10 The smooth ob-ject will be largely what is re-turned from Underfull \hbox (badness 2057) in paragraph at lines 11193--11196 [][][]\T1/pcr/m/n/10 smooth.construct.so.smooth.spec[][][][]\T1/ptm/m/n/10 , al -though el-e-ments []\T1/pcr/m/n/10 X []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 S [ ]\T1/ptm/m/n/10 are not needed, [3129] [3130] Underfull \hbox (badness 1253) in paragraph at lines 11323--11325 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [3131] [3132] [3133] [3134] [3135] Underfull \hbox (badness 1946) in paragraph at lines 11576--11583 []\T1/ptm/m/n/10 The sec-ond method rep-re-sents the con-ven-tional ran-dom ef- fects in a GAM in the same Underfull \hbox (badness 2221) in paragraph at lines 11576--11583 \T1/ptm/m/n/10 way that the smooths are rep-re-sented --- as pe-nal-ized re-gre s-sion terms. This method Underfull \hbox (badness 2042) in paragraph at lines 11576--11583 \T1/ptm/m/n/10 can be used with [][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 by mak-ing use of []\T1/pcr/m/n/10 s(...,bs="re") []\T1/ptm/m/n/10 terms in a model: see Underfull \hbox (badness 2846) in paragraph at lines 11584--11587 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the []\T1/pcr/m/n /10 paraPen []\T1/ptm/m/n/10 ar-gu-ment to [][][]\T1/pcr/m/n/10 gam[][][] []\T1 /ptm/m/n/10 can be used: Underfull \hbox (badness 5862) in paragraph at lines 11584--11587 \T1/ptm/m/n/10 see [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/ptm/m/n/10 . If s mooth-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [3136] Overfull \hbox (9.78043pt too wide) in paragraph at lines 11650--11650 []\T1/pcr/m/n/9 rm1 <- gam(y ~ s(fac,bs="re")+s(x0)+s(x1)+s(x2)+s(x3),data=dat ,method="ML")[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 11660--11660 []\T1/pcr/m/n/9 ## The effect of the new factor levels (or any interaction inv olving them)[] [3137] Underfull \hbox (badness 10000) in paragraph at lines 11691--11694 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of []\T1/pcr/m/n/ 10 "deviance"[]\T1/ptm/m/n/10 , [3138] [3139] [3140] [3141] [3142] Overfull \hbox (36.78088pt too wide) in paragraph at lines 11993--11993 []\T1/pcr/m/n/10 s(..., k=-1,fx=FALSE,bs="tp",m=NA,by=NA,xt=NULL,id=NULL,sp=NU LL,pc=NULL) [3143] [3144] [3145] [3146] [3147] [3148] Overfull \hbox (9.78043pt too wide) in paragraph at lines 12366--12366 [] \T1/pcr/m/n/9 true <- mu + (del * sigma) * sinh((1/del) * asinh(qnorm(qq)) + (eps/del))[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 12380--12380 []\T1/pcr/m/n/9 b <- gam(list(accel~s(times, k=20, bs = "ad"), ~s(times, k = 1 0), ~1, ~1),[] Underfull \vbox (badness 10000) has occurred while \output is active [3149] [3150] Underfull \hbox (badness 3861) in paragraph at lines 12482--12485 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if Overfull \hbox (36.78088pt too wide) in paragraph at lines 12491--12491 []\T1/pcr/m/n/10 Sl.initial.repara(Sl, X, inverse = FALSE, both.sides = TRUE, cov = TRUE,[] [3151] Underfull \hbox (badness 10000) in paragraph at lines 12508--12512 []\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 inverse==TRUE []\T1/ptm/m/n/10 and []\T1/p cr/m/n/10 both.sides==FALSE []\T1/ptm/m/n/10 then the re- Underfull \hbox (badness 10000) in paragraph at lines 12548--12552 []\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 inverse==TRUE []\T1/ptm/m/n/10 and []\T1/p cr/m/n/10 both.sides==FALSE []\T1/ptm/m/n/10 then the re- [3152] Overfull \hbox (6.78088pt too wide) in paragraph at lines 12571--12571 []\T1/pcr/m/n/10 Sl.setup(G,cholesky=FALSE,no.repara=FALSE,sparse=FALSE,keepS= FALSE) [3153] [3154] Overfull \hbox (20.58041pt too wide) in paragraph at lines 12695--12695 [] \T1/pcr/m/n/9 range(er$values-um$values[ind]);range(abs(er$vectors)-abs(um$ vectors[,ind]))[] Underfull \hbox (badness 1975) in paragraph at lines 12706--12711 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [3155] Underfull \hbox (badness 1803) in paragraph at lines 12783--12787 \T1/ptm/m/n/10 The last en-try will be the []\T1/pcr/m/n/10 by []\T1/ptm/m/n/10 vari-able, if []\T1/pcr/m/n/10 object$by []\T1/ptm/m/n/10 is not []\T1/pcr/m/n /10 "NA"[]\T1/ptm/m/n/10 . Underfull \hbox (badness 1502) in paragraph at lines 12795--12807 []\T1/pcr/m/n/10 cs.smooth.spec []\T1/ptm/m/n/10 (cu-bic re-gres-sion splines w ith shrinkage-to-zero); []\T1/pcr/m/n/10 cc.smooth.spec [3156] Underfull \hbox (badness 2401) in paragraph at lines 12812--12816 []\T1/ptm/m/n/10 method is used if there is no more spe-cific method avail-able . Plot meth-ods can be Underfull \hbox (badness 2970) in paragraph at lines 12812--12816 \T1/ptm/m/n/10 added for spe-cific smooth classes, see source code for []\T1/pc r/m/n/10 mgcv:::plot.sos.smooth[]\T1/ptm/m/n/10 , [3157] [3158] [3159] Underfull \hbox (badness 6876) in paragraph at lines 13007--13013 [][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use adap-tive smooths of on e or two vari-ables, spec-i-fied via terms like [3160] Underfull \hbox (badness 10000) in paragraph at lines 13048--13049 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3161] [3162] Underfull \hbox (badness 10000) in paragraph at lines 13166--13167 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3163] Overfull \hbox (4.38043pt too wide) in paragraph at lines 13220--13220 [] \T1/pcr/m/n/9 b <- gam(y~s(x0,bs=bs,m=c(4,2))+s(x1,bs=bs)+s(x2,k=15,bs=bs, m=c(4,3,0))+[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 13232--13232 [] \T1/pcr/m/n/9 ## now a model with first order penalty evaluated over (-.5, 1.5) (black)[] [3164] Overfull \hbox (9.78043pt too wide) in paragraph at lines 13244--13244 [] \T1/pcr/m/n/9 ## penalty defined on (-.5,1.5) gives plausible predictions and intervals[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 13249--13249 [] \T1/pcr/m/n/9 ## penalty defined on whole real line gives constant width i ntervals away[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 13255--13255 [] \T1/pcr/m/n/9 ## penalty defined only over the data interval (0,1) gives w ild and wide[] Overfull \hbox (3.70428pt too wide) in paragraph at lines 13256--13256 [] \T1/pcr/m/n/9 ## extrapolation since penalty has been \TS1/cmtt/m/n/9 `\T1 /pcr/m/n/9 turned off\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 outside data range:[] [3165] Underfull \hbox (badness 10000) in paragraph at lines 13325--13327 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a Underfull \hbox (badness 10000) in paragraph at lines 13325--13327 \T1/ptm/m/n/10 term []\T1/pcr/m/n/10 s(...,bs="cr",...)[]\T1/ptm/m/n/10 , []\T1 /pcr/m/n/10 s(...,bs="cs",...) []\T1/ptm/m/n/10 or [3166] [3167] Underfull \hbox (badness 10000) in paragraph at lines 13455--13456 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3168] [3169] Overfull \hbox (9.78043pt too wide) in paragraph at lines 13536--13536 []\T1/pcr/m/n/9 b <- gam(y~s(x,z,bs="ds",m=c(1,.5),k=50),data=data) ## first deriv penalty[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 13537--13537 []\T1/pcr/m/n/9 b1 <- gam(y~s(x,z,bs="ds",m=c(2,.5),k=50),data=data) ## modifi ed 2nd deriv[] [3170] [3171] Underfull \hbox (badness 10000) in paragraph at lines 13690--13691 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3172] [3173] [3174] [3175] [3176] Overfull \hbox (9.78043pt too wide) in paragraph at lines 13940--13940 []\T1/pcr/m/n/9 b <- gam(crime ~ s(district,bs="mrf",k=20,xt=xt),data=columb,m ethod="REML")[] [3177] Underfull \hbox (badness 10000) in paragraph at lines 14001--14003 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3178] [3179] Underfull \hbox (badness 10000) in paragraph at lines 14160--14163 []\T1/ptm/m/n/10 For the []\T1/pcr/m/n/10 smooth.construct []\T1/ptm/m/n/10 met hod a smooth spec-i-fi-ca-tion ob- Underfull \hbox (badness 3312) in paragraph at lines 14160--14163 \T1/ptm/m/n/10 ject, usu-ally gen-er-ated by a term []\T1/pcr/m/n/10 s(x,...,bs ="re",)[]\T1/ptm/m/n/10 . For the Underfull \hbox (badness 7099) in paragraph at lines 14160--14163 []\T1/pcr/m/n/10 predict.Matrix []\T1/ptm/m/n/10 method an ob-ject of class []\ T1/pcr/m/n/10 "random.effect" [3180] [3181] Overfull \hbox (4.38043pt too wide) in paragraph at lines 14246--14246 []\T1/pcr/m/n/9 b <- c(rnorm(nb/2)*2,rnorm(nb/2)*.5) ## random effect now with 2 variances[] [3182] Underfull \hbox (badness 10000) in paragraph at lines 14291--14297 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a Underfull \hbox (badness 7832) in paragraph at lines 14291--14297 []\T1/pcr/m/n/10 s(...,bs="so",xt=list(bnd=bnd,...)) []\T1/ptm/m/n/10 term in a []\T1/pcr/m/n/10 gam []\T1/ptm/m/n/10 for- [3183] [3184] [3185] Overfull \hbox (36.7804pt too wide) in paragraph at lines 14506--14506 []\T1/pcr/m/n/9 ## notice NULL element in \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 xt\TS1 /pcr/m/n/9 ' \T1/pcr/m/n/9 list - to indicate no xt object for "cr" basis...[] Underfull \vbox (badness 10000) has occurred while \output is active [3186] Underfull \vbox (badness 10000) has occurred while \output is active [3187] Underfull \hbox (badness 10000) in paragraph at lines 14609--14617 [][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths on th e sphere, via terms like Underfull \hbox (badness 10000) in paragraph at lines 14635--14636 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3188] [3189] [3190] Underfull \hbox (badness 7613) in paragraph at lines 14780--14783 []\T1/ptm/m/n/10 method an ob-ject of class []\T1/pcr/m/n/10 "sz.interaction" [ ]\T1/ptm/m/n/10 pro-duced by the [3191] Underfull \hbox (badness 1546) in paragraph at lines 14801--14802 []\T1/ptm/m/n/10 The terms can have a smooth-ing pa-ram-e-ter per smooth, or a sin-gle smooth-ing pa-ram-e- Overfull \hbox (128.58029pt too wide) in paragraph at lines 14847--14847 []\T1/pcr/m/n/9 b <- gam(y ~ s(x)+s(f1,x,bs="sz")+s(f2,x,bs="sz")+s(f1,f2,x,bs ="sz",id=1),data=dat,method="REML")[] [3192] [3193] [3194] Underfull \hbox (badness 3396) in paragraph at lines 14993--14996 [][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths of an y num-ber of vari-ables, spec-i-fied via terms like Underfull \hbox (badness 10000) in paragraph at lines 15038--15040 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3195] [3196] [3197] [3198] [3199] [3200] Underfull \hbox (badness 10000) in paragraph at lines 15329--15331 []\T1/pcr/m/n/10 bs="fs" []\T1/ptm/m/n/10 A spe-cial smoother class (see [3201] Underfull \hbox (badness 10000) in paragraph at lines 15363--15367 [][][]\T1/pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][][]\ T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 t2[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m /n/10 tprs[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Duchon.spline[][][][]\T 1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cubic.regression.spline[][][][]\T1/ptm/m/n/ 10 , Underfull \hbox (badness 10000) in paragraph at lines 15363--15367 [][][]\T1/pcr/m/n/10 p.spline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 d.sp line[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 mrf[][][][]\T1/ptm/m/n/10 , [ ][][]\T1/pcr/m/n/10 soap[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Spherical .Spline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 adaptive.smooth[][][][]\T1 /ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15363--15367 [][][]\T1/pcr/m/n/10 user.defined.smooth[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/ m/n/10 smooth.construct.re.smooth.spec[][][][]\T1/ptm/m/n/10 , [3202] [3203] [3204] [3205] [3206] Underfull \hbox (badness 2158) in paragraph at lines 15652--15652 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [3207] Overfull \hbox (48.78088pt too wide) in paragraph at lines 15731--15731 []\T1/pcr/m/n/10 spasm.sp(object,sp,w=rep(1,object$nobs),get.trH=TRUE,block=0, centre=FALSE)[] [3208] [3209] Overfull \hbox (12.78088pt too wide) in paragraph at lines 15865--15865 [] \T1/pcr/m/n/10 signif.stars = getOption("show.signif.stars "),...)[] [3210] [3211] Underfull \hbox (badness 4846) in paragraph at lines 15996--15999 []\T1/ptm/m/n/10 The es-ti-mated co-vari-ance ma-trix of the pa-ram-e-ters (or es-ti-ma-tors if [3212] [3213] [3214] [3215] [3216] [3217] [3218] [3219] [3220] [3221] [3222] [3223] [3224] [3225] [3226] [3227] [3228] [3229] [3230] [3231] Overfull \hbox (120.78088pt too wide) in paragraph at lines 17220--17220 []\T1/pcr/m/n/10 vcov(object, sandwich=FALSE, freq = FALSE, dispersion = NULL, unconditional=FALSE, ...)[] [3232] Underfull \hbox (badness 1715) in paragraph at lines 17242--17243 []\T1/ptm/m/n/10 Basically, just ex-tracts []\T1/pcr/m/n/10 object$Ve[]\T1/ptm/ m/n/10 , []\T1/pcr/m/n/10 object$Vp []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 object $Vc []\T1/ptm/m/n/10 (if avail-able) from a [3233] [3234] [3235] Overfull \hbox (54.78088pt too wide) in paragraph at lines 17433--17433 []\T1/pcr/m/n/10 XWXd(X,w,k,ks,ts,dt,v,qc,nthreads=1,drop=NULL,ar.stop=-1,ar.r ow=-1,ar.w=-1, Overfull \hbox (48.78088pt too wide) in paragraph at lines 17435--17435 []\T1/pcr/m/n/10 XWyd(X,w,y,k,ks,ts,dt,v,qc,drop=NULL,ar.stop=-1,ar.row=-1,ar. w=-1,lt=NULL)[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 17437--17437 []\T1/pcr/m/n/10 diagXVXd(X,V,k,ks,ts,dt,v,qc,drop=NULL,nthreads=1,lt=NULL,rt= NULL)[] Overfull \hbox (12.78088pt too wide) in paragraph at lines 17438--17438 []\T1/pcr/m/n/10 ijXVXd(i,j,X,V,k,ks,ts,dt,v,qc,drop=NULL,nthreads=1,lt=NULL,r t=NULL)[] [3236] Underfull \hbox (badness 10000) in paragraph at lines 17458--17459 []\T1/ptm/m/n/10 Negative to ig-nore. Oth-er-wise sum rows Underfull \hbox (badness 1668) in paragraph at lines 17458--17459 []\T1/pcr/m/n/10 (ar.stop[i-1]+1):ar.stop[i] []\T1/ptm/m/n/10 of the rows se-le cted by []\T1/pcr/m/n/10 ar.row [3237] [3238] [3239] [3240] Overfull \hbox (20.58041pt too wide) in paragraph at lines 17656--17656 []\T1/pcr/m/n/9 ## 1. If the zero inflation rate becomes decoupled from the li near predictor,[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 17657--17657 []\T1/pcr/m/n/9 ## it is possible for the linear predictor to be almost unboun ded in regions[] Overfull \hbox (25.98041pt too wide) in paragraph at lines 17669--17669 []\T1/pcr/m/n/9 ## 3. Refit fixing the theta parameters at their estimated val ues, to check we[] [3241] [3242] [3243]) (./nlme-pkg.tex [3244] Chapter 25. [3245] Underfull \hbox (badness 1009) in paragraph at lines 78--87 []\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served - fit-ted) are used; else, if [3246] Underfull \hbox (badness 1009) in paragraph at lines 168--177 []\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served - fit-ted) are used; else, if [3247] [3248] [3249] [3250] Overfull \hbox (4.38043pt too wide) in paragraph at lines 448--448 [] \T1/pcr/m/n/9 lme(rate ~(pressure + I(pressure^2) + I(pressure^3) + I(pres sure^4))*QB,[] [3251] [3252] [3253] Overfull \hbox (20.58041pt too wide) in paragraph at lines 589--589 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 251-254 --------------------------- ---------------[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 605--605 []\T1/pcr/m/n/9 # Compare an "lme" object with a "gls" object (test would be n on-sensical!)[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 608--608 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 222-225 --------------------------- ---------------[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 615--615 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 352-365 --------------------------- ---------------[] [3254] [3255] [3256] [3257] [3258] [3259] [3260] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1078--1078 [] \T1/pcr/m/n/9 y = "Distance from pituitary to pterygomaxil lary fissure"),[] [3261] [3262] Underfull \hbox (badness 5446) in paragraph at lines 1140--1142 []\T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 http://stat.gamma.rug.nl/snijders/multilevel .htm[]\T1/ptm/m/n/10 ', the first edi-tion of [3263] [3264] [3265] [3266] [3267] [3268] [3269] Underfull \hbox (badness 10000) in paragraph at lines 1617--1620 [][][]\T1/pcr/m/n/10 lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fixed. effects.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 ranef.lmList[][][][ ]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.ranef.lmList[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 3780) in paragraph at lines 1634--1636 []\T1/ptm/m/n/10 This method func-tion ex-tracts the co-ef-fi-cients as-so-ci-a ted with each com-po-nent of the [3270] [3271] [3272] [3273] [3274] Underfull \hbox (badness 2042) in paragraph at lines 1975--1981 \T1/ptm/m/n/10 is in-ner to the []\T1/pcr/m/n/10 displayLevel []\T1/ptm/m/n/10 group-ing fac-tor. If equal to []\T1/pcr/m/n/10 TRUE[]\T1/ptm/m/n/10 , [3275] [3276] Underfull \hbox (badness 1132) in paragraph at lines 2127--2129 []\T1/ptm/m/n/10 fitted model ob-jects, from which pre-dic-tions can be ex-trac ted us-ing the [3277] [3278] Underfull \hbox (badness 4168) in paragraph at lines 2238--2244 [][][]\T1/pcr/m/n/10 ACF.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corAR MA[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/pcr/m/n/10 Dim.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m /n/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [3279] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2263--2263 [] \T1/pcr/m/n/9 gls(rate ~(pressure + I(pressure^2) + I(pressure^3) + I(pres sure^4))*QB,[] [3280] [3281] [3282] [3283] [3284] [3285] [3286] [3287] Underfull \hbox (badness 10000) in paragraph at lines 2816--2820 [][][]\T1/pcr/m/n/10 corFactor[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cor Matrix.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 recalc.corStruct[ ][][][]\T1/ptm/m/n/10 , [3288] [3289] [3290] [3291] [3292] [3293] [3294] [3295] [3296] [3297] [3298] [3299] Underfull \hbox (badness 6493) in paragraph at lines 3548--3556 [][][]\T1/pcr/m/n/10 corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corGau s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corLin[][][][]\T1/ptm/m/n/10 , [ ][][]\T1/pcr/m/n/10 corRatio[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corSp her[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.corStruct[][][][]\T 1/ptm/m/n/10 , [3300] [3301] [3302] [3303] [3304] [3305] [3306] [3307] [3308] [3309] [3310] [3311] [3312] [3313] [3314] [3315] [3316] [3317] [3318] [3319] [3320] [3321] [3322] Underfull \hbox (badness 10000) in paragraph at lines 5116--5120 [][][]\T1/pcr/m/n/10 getCovariate.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/p cr/m/n/10 getCovariate.data.frame[][][][]\T1/ptm/m/n/10 , [3323] [3324] [3325] [3326] [3327] [3328] [3329] Underfull \hbox (badness 10000) in paragraph at lines 5540--5543 [][][]\T1/pcr/m/n/10 getGroups.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/ m/n/10 getGroups.data.frame[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 getGro ups.gls[][][][]\T1/ptm/m/n/10 , [3330] [3331] [3332] [3333] [3334] [3335] [3336] [3337] [3338] Underfull \hbox (badness 2799) in paragraph at lines 6044--6050 \T1/ptm/m/n/10 covariance ma-trix, ei-ther []\T1/pcr/m/n/10 "random.effects" [] \T1/ptm/m/n/10 for the random-effects [3339] Underfull \hbox (badness 7133) in paragraph at lines 6105--6109 []\T1/ptm/m/n/10 an op-tional data frame con-tain-ing the vari-ables named in [ ]\T1/pcr/m/n/10 model[]\T1/ptm/m/n/10 , [3340] Underfull \hbox (badness 2057) in paragraph at lines 6194--6205 [][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gl sControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 glsObject[][][][]\T1/ptm/ m/n/10 , [][][]\T1/pcr/m/n/10 glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m /n/10 plot.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.gls[][][][] \T1/ptm/m/n/10 , [3341] Underfull \hbox (badness 10000) in paragraph at lines 6258--6260 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3342] [3343] [3344] [3345] Underfull \hbox (badness 7133) in paragraph at lines 6505--6509 []\T1/ptm/m/n/10 an op-tional data frame con-tain-ing the vari-ables named in [ ]\T1/pcr/m/n/10 model[]\T1/ptm/m/n/10 , [3346] Underfull \hbox (badness 10000) in paragraph at lines 6602--6608 [][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gn lsControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gnlsObject[][][][]\T1/pt m/m/n/10 , [][][]\T1/pcr/m/n/10 gnlsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc r/m/n/10 predict.gnls[][][][]\T1/ptm/m/n/10 , Overfull \hbox (54.78088pt too wide) in paragraph at lines 6629--6629 []\T1/pcr/m/n/10 gnlsControl(maxIter = 50, nlsMaxIter = 7, msMaxIter = 50, min Scale = 0.001, [3347] Underfull \hbox (badness 10000) in paragraph at lines 6667--6669 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3348] [3349] [3350] [3351] Underfull \hbox (badness 10000) in paragraph at lines 6936--6943 [][][]\T1/pcr/m/n/10 formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gappl y[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gsummary[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.nff GroupedData[][][][]\T1/ptm/m/n/10 , [3352] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6954--6954 [] \T1/pcr/m/n/9 y = "Distance from pituitary to pterygomaxilla ry fissure" ),[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6959--6959 []\T1/pcr/m/n/9 fm1 <- lme( Orth.new ) # fixed and groups formulae extracted from object[] Underfull \hbox (badness 2875) in paragraph at lines 6981--6983 []\T1/ptm/m/n/10 an ob-ject to be sum-ma-rized - usu-ally a []\T1/pcr/m/n/10 gr oupedData []\T1/ptm/m/n/10 ob-ject or a [3353] [3354] [3355] Underfull \hbox (badness 10000) in paragraph at lines 7196--7202 [][][]\T1/pcr/m/n/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr /m/n/10 Initialize.glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initi alize.lmeStruct[][][][]\T1/ptm/m/n/10 , [3356] [3357] [3358] Underfull \hbox (badness 1997) in paragraph at lines 7341--7349 []\T1/ptm/m/n/10 an op-tional list with con-trol pa-ram-e-ters for the ini-tial -iza-tion and op-ti- Underfull \hbox (badness 2205) in paragraph at lines 7341--7349 \T1/ptm/m/n/10 miza-tion al-go-rithms used in []\T1/pcr/m/n/10 lme[]\T1/ptm/m/n /10 . De-faults to []\T1/pcr/m/n/10 list(niterEM=20, Underfull \hbox (badness 3118) in paragraph at lines 7364--7367 [][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initializ e.reStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.corStruct[][ ][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.varFunc[][][][]\T1/ptm/m/ n/10 , [3359] [3360] [3361] Underfull \hbox (badness 3354) in paragraph at lines 7574--7576 []\T1/ptm/m/n/10 linear model co-ef-fi-cients, only present when []\T1/pcr/m/n/ 10 which []\T1/ptm/m/n/10 is not equal to [3362] [3363] [3364] [3365] [3366] [3367] [3368] [3369] Underfull \hbox (badness 10000) in paragraph at lines 8101--8118 [][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lm e.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lme.groupedData[][][][]\T 1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lmeControl[][][][]\T1/ptm/m/n/10 , [][][]\T 1/pcr/m/n/10 lmeObject[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 8101--8118 [][][]\T1/pcr/m/n/10 lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lmL ist[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/pcr/m/n/10 plot.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 qqnorm.lme[][][][]\T1/ ptm/m/n/10 , [3370] Overfull \hbox (12.78088pt too wide) in paragraph at lines 8144--8144 [] \T1/pcr/m/n/10 subset, method, na.action, control, contrasts, keep.data = TRUE)[] Underfull \hbox (badness 1642) in paragraph at lines 8153--8175 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o f the form [3371] [3372] [3373] [3374] Overfull \hbox (36.78088pt too wide) in paragraph at lines 8418--8418 []\T1/pcr/m/n/10 lmeControl(maxIter = 50, msMaxIter = 50, tolerance = 1e-6, ni terEM = 25, Underfull \hbox (badness 1189) in paragraph at lines 8443--8445 []\T1/ptm/m/n/10 maximum num-ber of eval-u-a-tions of the ob-jec-tive func-tion per-mit-ted for [3375] Underfull \hbox (badness 10000) in paragraph at lines 8466--8468 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is Overfull \hbox (9.78043pt too wide) in paragraph at lines 8509--8509 []\T1/pcr/m/n/9 # request that information on the evolution of the ms iteratio ns be printed[] [3376] [3377] [3378] [3379] [3380] [3381] [3382] [3383] [3384] [3385] [3386] [3387] Underfull \hbox (badness 10000) in paragraph at lines 9266--9273 [][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 ,[][][]\T1/pcr/m/n/10 gls[][][][ ]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 logLik.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 logLik.glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/ n/10 logLik.lmeStruct[][][][]\T1/ptm/m/n/10 , Overfull \hbox (4.38043pt too wide) in paragraph at lines 9277--9277 []\T1/pcr/m/n/9 fm1 <- lme(distance ~ Sex * age, Orthodont, random = ~ age, me thod = "ML") [3388] [3389] [3390] [3391] [3392]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9628 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl icate ignored \relax l.9628 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3393] Underfull \hbox (badness 10000) in paragraph at lines 9648--9651 []\T1/ptm/m/n/10 a ma-trix, or list of ma-tri-ces, with the same di-men-sions a s Underfull \hbox (badness 3108) in paragraph at lines 9692--9695 []\T1/ptm/m/n/10 a ma-trix with the new val-ues to be as-signed to the positive -definite Underfull \hbox (badness 2521) in paragraph at lines 9692--9695 \T1/ptm/m/n/10 ma-trix rep-re-sented by []\T1/pcr/m/n/10 object[]\T1/ptm/m/n/10 . Must have the same di-men-sions as [3394] [3395] [3396] [3397] [3398] [3399] [3400] [3401] [3402] [3403] [3404] Overfull \hbox (18.78088pt too wide) in paragraph at lines 10362--10362 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, weights, [3405] Overfull \hbox (18.78088pt too wide) in paragraph at lines 10366--10366 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, weights,[] Underfull \hbox (badness 1596) in paragraph at lines 10395--10421 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3406] [3407] Overfull \hbox (18.78088pt too wide) in paragraph at lines 10549--10549 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, weights,[] [3408] [3409] [3410] Overfull \hbox (36.78088pt too wide) in paragraph at lines 10700--10700 [] \T1/pcr/m/n/10 opt = c("nlminb", "nlm"), natural = TRUE, sigma = NULL, ...)[] Underfull \hbox (badness 2213) in paragraph at lines 10711--10716 []\T1/ptm/m/n/10 maximum num-ber of it-er-a-tions for [][][]\T1/pcr/m/n/10 nlmi nb[][][] []\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 iter.max[]\T1/ptm/m/n/10 ) or the [ ][][]\T1/pcr/m/n/10 nlm[][][] Underfull \hbox (badness 6961) in paragraph at lines 10733--10737 []\T1/ptm/m/n/10 a log-i-cal value passed as the []\T1/pcr/m/n/10 trace []\T1/p tm/m/n/10 to [][][]\T1/pcr/m/n/10 nlminb[][][](.., control= [3411] Underfull \hbox (badness 10000) in paragraph at lines 10752--10754 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3412] [3413] [3414] [3415] Overfull \hbox (96.18033pt too wide) in paragraph at lines 11048--11048 []\T1/pcr/m/n/9 cfm1 <- confint(fm1) # via profiling each % FIXME: only *one* message instead of one *each*[] Overfull \hbox (90.78033pt too wide) in paragraph at lines 11049--11049 []\T1/pcr/m/n/9 mat.class <- class(matrix(1)) # ("matrix", "array") for R >= 4 .0.0; ("matrix" in older R)[] [3416] [3417] [3418] [3419] [3420] [3421] Overfull \hbox (25.98041pt too wide) in paragraph at lines 11439--11439 []\T1/pcr/m/n/9 example(compareFits) # cF12 <- compareFits(coef(lmList(Orthodo nt)), .. lme(*)) [3422] [3423] [3424] [3425] [3426] [3427] Underfull \hbox (badness 6268) in paragraph at lines 11826--11836 [][][]\T1/pcr/m/n/10 pdBlocked[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdC ompSymm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdDiag[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/pcr/m/n/10 pdFactor[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdIdent[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/pcr/m/n/10 pdMatrix[][][][]\T1/ptm/m/n/10 , [3428] [3429] [3430] [3431] Underfull \hbox (badness 10000) in paragraph at lines 12087--12093 [][][]\T1/pcr/m/n/10 as.matrix.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/ 10 coef.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdBlocked[][][][]\T1 /ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/ pcr/m/n/10 pdConstruct[][][][]\T1/ptm/m/n/10 , [3432] [3433] [3434] [3435] [3436] Underfull \hbox (badness 6876) in paragraph at lines 12409--12411 []\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 value []\T1/ptm/m/n/10 is an \T1/ptm/m/it/ 10 ini-tial-ized []\T1/pcr/m/n/10 pdMat []\T1/ptm/m/n/10 ob-ject, []\T1/pcr/m/n /10 object []\T1/ptm/m/n/10 will be con-structed from [3437] [3438] Underfull \hbox (badness 2452) in paragraph at lines 12565--12572 [][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdC ompSymm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdDiag[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/pcr/m/n/10 pdIdent[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdNatural[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdSymm[][][][]\T1/ptm/m/ n/10 , [][][]\T1/pcr/m/n/10 reStruct[][][][]\T1/ptm/m/n/10 , [3439] Underfull \hbox (badness 10000) in paragraph at lines 12631--12637 [][][]\T1/pcr/m/n/10 as.matrix.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/ 10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdFactor[][][][]\T1/p tm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/ n/10 pdMatrix.reStruct[][][][]\T1/ptm/m/n/10 , [3440] [3441] [3442] [3443] [3444] [3445] [3446] [3447] [3448] Overfull \hbox (25.98041pt too wide) in paragraph at lines 13220--13220 []\T1/pcr/m/n/9 example(compareFits) # cF12 <- compareFits(coef(lmList(Orthodo nt)), .. lme(*)) [3449] [3450] [3451] [3452] [3453] Overfull \hbox (9.78043pt too wide) in paragraph at lines 13585--13585 []\T1/pcr/m/n/9 plot(fm1, resid(., type = "pool") ~ fitted(.) | Sex, abline = 0, id = 0.05)[] [3454] Underfull \hbox (badness 10000) in paragraph at lines 13612--13615 []\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nffGroupe dData[]\T1/ptm/m/n/10 , rep-re-sent-ing a [3455] Underfull \hbox (badness 1838) in paragraph at lines 13655--13662 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If []\T1/pcr/m/ n/10 TRUE []\T1/ptm/m/n/10 and ei-ther []\T1/pcr/m/n/10 inner Underfull \hbox (badness 3713) in paragraph at lines 13655--13662 []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 innerGroups []\T1/ptm/m/n/10 are non-[]\T1 /pcr/m/n/10 NULL[]\T1/ptm/m/n/10 , a leg-end for the dif-fer-ent []\T1/pcr/m/n/ 10 inner Overfull \hbox (12.78088pt too wide) in paragraph at lines 13712--13712 []\T1/pcr/m/n/10 plot(x, outer, inner, innerGroups, xlab, ylab, strip, aspect, panel,[] [3456] Underfull \hbox (badness 10000) in paragraph at lines 13719--13722 []\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nfnGroupe dData[]\T1/ptm/m/n/10 , rep-re-sent-ing a Underfull \hbox (badness 2469) in paragraph at lines 13719--13722 []\T1/pcr/m/n/10 groupedData []\T1/ptm/m/n/10 ob-ject with a nu-meric pri-mary co-vari-ate and a sin-gle [3457] Underfull \hbox (badness 10000) in paragraph at lines 13827--13830 []\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nmGrouped Data[]\T1/ptm/m/n/10 , rep-re-sent-ing a [3458] [3459] Underfull \hbox (badness 10000) in paragraph at lines 13921--13923 [][][]\T1/pcr/m/n/10 groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 c ollapse.groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.nfnGroupe dData[][][][]\T1/ptm/m/n/10 , [3460] [3461] [3462] [3463] [3464] [3465] [3466] [3467] Overfull \hbox (20.58041pt too wide) in paragraph at lines 14445--14445 []\T1/pcr/m/n/9 newOrth <- data.frame(Sex = c("Male","Male","Female","Female", "Male","Male"),[] [3468] [3469] [3470] [3471] [3472] [3473] [3474] [3475] [3476]pdfTeX warning (e xt4): destination with the same identifier (name{Rfn.random.effects}) has been already used, duplicate ignored \relax l.15098 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.random.effects.1}) has been already us ed, duplicate ignored \relax l.15098 ...Extract Random Effects}{random.effects} [3477] [3478] [3479] [3480] [3481] [3482] [3483] [3484] [3485] [3486] [3487] Overfull \hbox (25.98041pt too wide) in paragraph at lines 15734--15734 []\T1/pcr/m/n/9 plot(Remifentanil, type = "l", lwd = 2) # shows the 65 patient s\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 remi profiles [3488] Underfull \hbox (badness 1009) in paragraph at lines 15786--15795 []\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served - fit-ted) are used; else, if [3489] [3490] Overfull \hbox (66.78088pt too wide) in paragraph at lines 15933--15933 [] \T1/pcr/m/n/10 type = c("response", "pearson", "normalized"), asLi st = FALSE, ...)[] [3491] [3492] [3493] [3494] [3495] Underfull \hbox (badness 10000) in paragraph at lines 16268--16274 [][][]\T1/pcr/m/n/10 groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 l me[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/10 , [ ][][]\T1/pcr/m/n/10 solve.reStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 summary.reStruct[][][][]\T1/ptm/m/n/10 , [3496] Overfull \hbox (18.78088pt too wide) in paragraph at lines 16300--16300 [] \T1/pcr/m/n/10 method = c("REML", "ML"), niterEM = c(40, 200), useG en, ...)[] [3497] [3498] [3499] [3500] [3501] [3502] [3503] Underfull \hbox (badness 1728) in paragraph at lines 16786--16789 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3504] [3505] [3506] [3507] [3508] Underfull \hbox (badness 1803) in paragraph at lines 17120--17129 \T1/pcr/m/n/10 of an Identity" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pdIdent[]\ T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "General Positive-Definite, Underfull \hbox (badness 10000) in paragraph at lines 17120--17129 \T1/pcr/m/n/10 Natural Parametrization" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 p dNatural[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "General Underfull \hbox (badness 7888) in paragraph at lines 17120--17129 \T1/pcr/m/n/10 Positive-Definite" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pdSymm[ ]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 data.class(object) [3509] Underfull \hbox (badness 10000) in paragraph at lines 17191--17192 []\T1/pcr/m/n/10 "Constant plus power of variance Underfull \hbox (badness 10000) in paragraph at lines 17192--17193 []\T1/pcr/m/n/10 "Constant plus proportion of variance [3510] [3511] [3512] [3513] Underfull \hbox (badness 10000) in paragraph at lines 17441--17449 [][][]\T1/pcr/m/n/10 varComb[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varCo nstPower[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varConstProp[][][][]\T1/p tm/m/n/10 , [][][]\T1/pcr/m/n/10 varExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m /n/10 varFixed[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varIdent[][][][]\T1 /ptm/m/n/10 , [3514] [3515] [3516] [3517] Overfull \hbox (4.38043pt too wide) in paragraph at lines 17713--17713 []\T1/pcr/m/n/9 # Generate some synthetic data using the two-component error m odel and use Overfull \hbox (25.98041pt too wide) in paragraph at lines 17715--17715 []\T1/pcr/m/n/9 # overparameterisation in the case of a constant term in the v ariance function[] [3518] [3519] [3520] [3521] [3522] [3523] Underfull \hbox (badness 10000) in paragraph at lines 18153--18163 [][][]\T1/pcr/m/n/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n /10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.co rLin[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 18153--18163 [][][]\T1/pcr/m/n/10 Variogram.corRatio[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m /n/10 Variogram.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogr am.corSpher[][][][]\T1/ptm/m/n/10 , [3524] Underfull \hbox (badness 3579) in paragraph at lines 18185--18190 \T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p tm/m/n/10 , in which case a se-quence [3525] Underfull \hbox (badness 3579) in paragraph at lines 18249--18254 \T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p tm/m/n/10 , in which case a se-quence [3526] Underfull \hbox (badness 3579) in paragraph at lines 18312--18317 \T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p tm/m/n/10 , in which case a se-quence [3527] Underfull \hbox (badness 1577) in paragraph at lines 18373--18375 []\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 "[][]corR atio[][][]"[]\T1/ptm/m/n/10 , rep-re-sent-ing an Ra-tio-nal Underfull \hbox (badness 3579) in paragraph at lines 18375--18380 \T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p tm/m/n/10 , in which case a se-quence [3528] Underfull \hbox (badness 3579) in paragraph at lines 18438--18443 \T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p tm/m/n/10 , in which case a se-quence Underfull \hbox (badness 10000) in paragraph at lines 18471--18480 [][][]\T1/pcr/m/n/10 corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Va riogram[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.default[][][][]\ T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 18471--18480 [][][]\T1/pcr/m/n/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/ n/10 Variogram.corLin[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.co rRatio[][][][]\T1/ptm/m/n/10 , [3529] Underfull \hbox (badness 3579) in paragraph at lines 18510--18515 \T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p tm/m/n/10 , in which case a se-quence [3530] [3531] Underfull \hbox (badness 1009) in paragraph at lines 18656--18665 []\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served - fit-ted) are used; else, if [3532] [3533] Underfull \hbox (badness 1009) in paragraph at lines 18788--18797 []\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served - fit-ted) are used; else, if [3534] [3535] [3536] [3537] [3538] [3539] [3540] [3541] [3542]) (./nnet-pkg.tex Chapter 26. pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom} ) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.multinom.1}) has been already used, du plicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} [3543] Overfull \hbox (12.78088pt too wide) in paragraph at lines 71--71 [] \T1/pcr/m/n/10 contrasts = NULL, Hess = FALSE, summ = 0, censored = FALSE,[] [3544] [3545] [3546] Overfull \hbox (15.18042pt too wide) in paragraph at lines 371--371 []\T1/pcr/m/n/9 ir.nn2 <- nnet(species ~ ., data = ird, subset = samp, size = 2, rang = 0.1,[] [3547] Overfull \hbox (4.38043pt too wide) in paragraph at lines 428--428 []\T1/pcr/m/n/9 targets <- matrix(c(rep(c(1,0,0),50), rep(c(0,1,0),50), rep(c( 0,0,1),50)),[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 431--431 []\T1/pcr/m/n/9 ir1 <- nnet(ir[samp,], targets[samp,], size=2, rang=0.1, decay =5e-4, maxit=200)[] [3548] [3549] Overfull \hbox (15.18042pt too wide) in paragraph at lines 511--511 []\T1/pcr/m/n/9 ir.nn2 <- nnet(species ~ ., data = ird, subset = samp, size = 2, rang = 0.1,[] [3550]) (./rpart-pkg.tex Chapter 27. [3551] [3552] [3553] [3554] Overfull \hbox (36.78088pt too wide) in paragraph at lines 324--324 []\T1/pcr/m/n/10 labels(object, digits = 4, minlength = 1L, pretty, collapse = TRUE, ...)[] [3555] Underfull \hbox (badness 2351) in paragraph at lines 349--353 \T1/ptm/m/n/10 age: []\T1/pcr/m/n/10 pretty = 0 []\T1/ptm/m/n/10 im-plies []\T1 /pcr/m/n/10 minlength = 0L[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pretty = NULL []\ T1/ptm/m/n/10 im-plies [3556] [3557] [3558] Underfull \hbox (badness 1442) in paragraph at lines 592--598 []\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 FALSE[]\T1/ptm/m/n/10 , the leaf nodes wil l be at the hor-i-zon-tal plot co-or-di-nates of [3559] [3560] Overfull \hbox (0.78088pt too wide) in paragraph at lines 738--738 [] \T1/pcr/m/n/10 filename = paste(deparse(substitute(tree)), ".ps", sep = ""),[] Underfull \hbox (badness 10000) in paragraph at lines 771--775 []\T1/ptm/m/n/10 Logical. If []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 (de-fault), adds to the la-bel Underfull \hbox (badness 1142) in paragraph at lines 771--775 \T1/pcr/m/n/10 #events level1/ #events level2/ \T1/ptm/m/n/10 etc. for method [ ]\T1/pcr/m/n/10 class[]\T1/ptm/m/n/10 , \T1/pcr/m/n/10 n [3561] [3562] [3563] Overfull \hbox (25.98041pt too wide) in paragraph at lines 915--915 []\T1/pcr/m/n/9 predict(fit, type = "matrix") # level number, class frequencie s, probabilities[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 934--934 []\T1/pcr/m/n/10 print(x, minlength = 0, spaces = 2, cp, digits = getOption("d igits"),[] [3564] [3565] [3566] [3567] Overfull \hbox (6.78088pt too wide) in paragraph at lines 1180--1180 []\T1/pcr/m/n/10 rpart(formula, data, weights, subset, na.action = na.rpart, m ethod, Overfull \hbox (12.78088pt too wide) in paragraph at lines 1181--1181 [] \T1/pcr/m/n/10 model = FALSE, x = FALSE, y = TRUE, parms, control, cos t, ...)[] Underfull \hbox (badness 2846) in paragraph at lines 1243--1245 []\T1/ptm/m/n/10 a list of op-tions that con-trol de-tails of the []\T1/pcr/m/n /10 rpart []\T1/ptm/m/n/10 al-go-rithm. See [3568] Overfull \hbox (20.58041pt too wide) in paragraph at lines 1287--1287 []\T1/pcr/m/n/9 par(mfrow = c(1,2), xpd = NA) # otherwise on some devices the text is clipped[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 1303--1303 []\T1/pcr/m/n/10 rpart.control(minsplit = 20, minbucket = round(minsplit/3), c p = 0.01, Overfull \hbox (60.78088pt too wide) in paragraph at lines 1304--1304 [] \T1/pcr/m/n/10 maxcompete = 4, maxsurrogate = 5, usesurrogate = 2, xval = 10,[] [3569] [3570] [3571] [3572] [3573] [3574] [3575] Underfull \hbox (badness 1565) in paragraph at lines 1760--1763 []\T1/ptm/m/n/10 the ploidy sta-tus of the tu-mor, from flow cy-tom-e-try. Val- ues are `[]\T1/pcr/m/n/10 diploid[]\T1/ptm/m/n/10 ', [3576] Overfull \hbox (12.78088pt too wide) in paragraph at lines 1854--1854 [] \T1/pcr/m/n/10 pretty = NULL, digits = getOption("digits") - 3, use.n = FALSE,[] [3577] [3578] [3579]) (./spatial-pkg.tex [3580] Chapter 28. [3581] [3582] [3583] [3584] [3585] [3586] Underfull \hbox (badness 10000) in paragraph at lines 423--427 [3587] [3588] [3589] [3590] [3591] [3592] [3593] [3594] [3595] [3596] [3597] [3598] [3599]) (./survival-pkg.tex [3600] Chapter 29. [3601] [3602] Overfull \hbox (31.3804pt too wide) in paragraph at lines 173--173 []\T1/pcr/m/n/9 aareg(formula = Surv(time, status) ~ age + sex + ph.ecog, data = lung, nmin = 1[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 192--192 []\T1/pcr/m/n/9 ## Not run: lines(lfit2[4], col=2) # Nearly the same, until t he last point[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 195--195 []\T1/pcr/m/n/9 # Chronic Granuomatous Disease. See section 8.5 of Therneau a nd Grambsch.[] [3603] [3604] Underfull \hbox (badness 6412) in paragraph at lines 284--286 []\T1/ptm/m/n/10 an op-tional list or vec-tor of group-ing el-e-ments, each as long as [3605] [3606]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.aml}) has been already used, duplicate ignored \relax l.384 ... Myelogenous Leukemia survival data}{aml} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.aml.1}) has been already used, duplica te ignored \relax l.384 ... Myelogenous Leukemia survival data}{aml} [3607] Overfull \hbox (9.78043pt too wide) in paragraph at lines 485--485 []\T1/pcr/m/n/9 fit <- coxph(Surv(futime, fustat) ~ resid.ds *rx + ecog.ps, da ta = ovarian) Overfull \hbox (4.38043pt too wide) in paragraph at lines 487--487 []\T1/pcr/m/n/9 fit2 <- coxph(Surv(futime, fustat) ~ resid.ds +rx + ecog.ps, d ata=ovarian)[] [3608] Overfull \hbox (6.78088pt too wide) in paragraph at lines 525--525 [] \T1/pcr/m/n/10 survreg(Surv(time, status) ~ age + sex + factor(ph.ecog), lung)[] [3609] Underfull \hbox (badness 1178) in paragraph at lines 605--615 []\T1/ptm/m/n/10 If H(t; z) is the pre-dicted cu-mu-la-tive haz-ard for an ob-s er-va-tion with co-vari-ate vec-tor z, [3610] [3611] [3612] Overfull \hbox (20.58041pt too wide) in paragraph at lines 792--792 []\T1/pcr/m/n/9 py <- pseudo(survfit(Surv(time, status) ~1, lung), time=730) # 2 year survival Overfull \hbox (30.78088pt too wide) in paragraph at lines 808--808 []\T1/pcr/m/n/10 brier(fit, times, newdata, ties = TRUE, detail = FALSE, timef ix = TRUE, [3613] Overfull \hbox (48.78088pt too wide) in paragraph at lines 891--891 [] \T1/pcr/m/n/10 method =c("Prentice","SelfPrentice","LinYing","I.Borgan", "II.Borgan"),[] [3614] [3615] [3616] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1034--1034 [] \T1/pcr/m/n/9 subcoh = ~subcohort, id=~seqno, stratum=~instit, cohort.siz e=stratsizes,[] [3617] [3618] Underfull \hbox (badness 1097) in paragraph at lines 1205--1207 []\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi al and negative-binomial data. Overfull \hbox (4.38043pt too wide) in paragraph at lines 1225--1225 []\T1/pcr/m/n/9 ppois(4, 10.24153) #chance of seeing 4 or fewer events wit h large rate[] [3619] [3620] Overfull \hbox (31.3804pt too wide) in paragraph at lines 1340--1340 []\T1/pcr/m/n/9 ## Not run: clogit(case ~ spontaneous + induced + strata(strat um), data=infert) [3621] Overfull \hbox (15.18042pt too wide) in paragraph at lines 1401--1401 []\T1/pcr/m/n/9 marginal.model <- coxph(Surv(time, status) ~ rx, data= rats, c luster=litter, pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) h as been already used, duplicate ignored \relax l.1407 ...erapy for Stage B/C colon cancer}{colon} [3622] [3623] Overfull \hbox (72.78088pt too wide) in paragraph at lines 1507--1507 [] \T1/pcr/m/n/10 influence=0, ranks = FALSE, reverse=FALSE, timefix=TRUE, ke epstrata=10, ...)[] [3624] [3625] [3626] Overfull \hbox (9.78043pt too wide) in paragraph at lines 1733--1733 []\T1/pcr/m/n/9 options(na.action = na.exclude) # predict all 1384 obs, incl uding missing[] [3627] Overfull \hbox (18.78088pt too wide) in paragraph at lines 1827--1827 []\T1/pcr/m/n/10 cox.zph(fit, transform="km", terms=TRUE, singledf=FALSE, glob al=TRUE) [3628] [3629] [3630] [3631] Underfull \hbox (badness 10000) in paragraph at lines 2145--2150 []\T1/ptm/m/n/10 One user mis-take that has re-cently arisen is to slav-ishly f ol-low the ad-vice of Underfull \hbox (badness 7486) in paragraph at lines 2145--2150 \T1/ptm/m/n/10 some cod-ing guides and prepend []\T1/pcr/m/n/10 survival:: []\T 1/ptm/m/n/10 onto ev-er-thing, in-clud-ing the spe- Underfull \hbox (badness 10000) in paragraph at lines 2145--2150 \T1/ptm/m/n/10 cial terms, e.g., []\T1/pcr/m/n/10 survival::coxph(survival:Surv (time, status) ~ age + [3632] [3633] Underfull \hbox (badness 3861) in paragraph at lines 2257--2261 [][][]\T1/pcr/m/n/10 coxph.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 coxphms.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 coxph.control[][][] []\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cluster[][][][]\T1/ptm/m/n/10 , [][][]\ T1/pcr/m/n/10 strata[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Surv[][][][]\ T1/ptm/m/n/10 , [3634] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2312--2312 []\T1/pcr/m/n/10 iter.max = 20, toler.inf = sqrt(eps), outer.max = 10, timefix =TRUE)[] [3635] [3636] [3637] [3638] [3639] [3640] [3641] [3642] [3643] Overfull \hbox (4.38043pt too wide) in paragraph at lines 2942--2942 [] \T1/pcr/m/n/9 [1] "extreme" "logistic" "gaussian" "weibull" " exponential"[] Overfull \hbox (6.78088pt too wide) in paragraph at lines 2983--2983 []\T1/pcr/m/n/10 finegray(formula, data, weights, subset, na.action= na.pass, etype, [3644] [3645] [3646] [3647] Overfull \hbox (12.78088pt too wide) in paragraph at lines 3227--3227 []\T1/pcr/m/n/10 frailty.t(x, sparse = (nclass > 5), theta, df, eps = 1e-05, t df = 5,[] [3648] [3649] [3650] [3651] Underfull \hbox (badness 1019) in paragraph at lines 3489--3491 []\T1/ptm/m/n/10 outcome: []\T1/pcr/m/n/10 censor[]\T1/ptm/m/n/10 , []\T1/pcr/m /n/10 thymic lymphoma[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 reticulum cell sarcoma other [3652] [3653] Overfull \hbox (15.18042pt too wide) in paragraph at lines 3634--3634 []\T1/pcr/m/n/9 kfit <- coxph(Surv(time, status)~ age + sex + disease + frailt y(id), kidney) [3654] Overfull \hbox (36.7804pt too wide) in paragraph at lines 3669--3669 [] \T1/pcr/m/n/9 factor(c(0, 1, 2,1,0,2), 0:2, c("censored", "progre ssion", "death")))[] Underfull \hbox (badness 1389) in paragraph at lines 3683--3685 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with Overfull \hbox (12.78088pt too wide) in paragraph at lines 3694--3694 [] \T1/pcr/m/n/10 conf.type = c("log", "log-log", "plain", "logit", "ar csin"),[] [3655] [3656] Overfull \hbox (36.7804pt too wide) in paragraph at lines 3835--3835 [] \T1/pcr/m/n/9 rmap=list(sex=sex, age=age*365.35, year=as.Da te(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 1979/01/01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )))[] [3657] [3658] Overfull \hbox (467.89665pt too wide) in alignment at lines 3976--3976 [] [] [3659] Underfull \vbox (badness 10000) has occurred while \output is active [3660] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4098--4098 []\T1/pcr/m/n/9 # surprise) but their rates of conversion to PCM are essential ly the same.[] [3661] [3662] [3663] [3664] [3665] [3666] [3667] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4549--4549 [] \T1/pcr/m/n/9 entry.dt = as.Date(paste("2011", 1:10, "5" , sep=\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 -\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )))[] [3668] [3669] Overfull \hbox (15.18042pt too wide) in paragraph at lines 4699--4699 []\T1/pcr/m/n/9 tdata <- data.frame(x= lung$age, y = 10*log(lung$age-35) + rno rm(228, 0, 2))[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4704--4704 []\T1/pcr/m/n/9 knots <- unlist(attributes(fit1$model[[2]])[c(\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 Boundary.knots\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 , \TS1/pcr/m/n/9 '\T1 /pcr/m/n/9 knots\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )])[] [3670] Overfull \hbox (4.38043pt too wide) in paragraph at lines 4708--4708 []\T1/pcr/m/n/9 unname(coef(fit1)[-1] - coef(fit1)[1]) # differences: yhat[2: 4] - yhat[1][] [3671] [3672] [3673] Overfull \vbox (11.01616pt too high) has occurred while \output is active [3674] [3675] [3676] Overfull \hbox (0.78088pt too wide) in paragraph at lines 5131--5131 [] \T1/pcr/m/n/10 pch=3, col=1, lty=1, lwd=1, cex=1, log=FALSE, xscale=1, ysca le=1,[] [3677] [3678] [3679] Overfull \hbox (24.78088pt too wide) in paragraph at lines 5369--5369 []\T1/pcr/m/n/10 se.fit=FALSE, na.action=na.pass, terms=names(object$assign), collapse,[] [3680] [3681] Overfull \hbox (9.78043pt too wide) in paragraph at lines 5522--5522 []\T1/pcr/m/n/9 mresid <- (lung$status-1) - predict(fit, type=\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 expected\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ) #Martingale resid[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 5530--5530 [] \T1/pcr/m/n/9 predict(fit, reference="sample") + sum(coef(fit) * fit$means , na.rm=TRUE)[] [3682] [3683] Overfull \hbox (25.98041pt too wide) in paragraph at lines 5616--5616 []\T1/pcr/m/n/9 pct <- 1:98/100 # The 100th percentile of predicted survival is at +infinity[] [3684] Overfull \hbox (6.78088pt too wide) in paragraph at lines 5694--5694 [] \T1/pcr/m/n/10 signif.stars = getOption("show.signif.stars"), expand=FALSE , ...)[] [3685] Underfull \hbox (badness 1852) in paragraph at lines 5766--5768 []\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.survfit"[]\T1/pt m/m/n/10 , which is the re-sult of the [3686] [3687] [3688] [3689] Overfull \hbox (20.58041pt too wide) in paragraph at lines 6020--6020 []\T1/pcr/m/n/9 rhat <- predict(rfit, newdata=expand.grid(ph.ecog=0:3, sex=1:2 ), se.fit=TRUE)[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6032--6032 []\T1/pcr/m/n/9 # the estimate for ph.ecog=3 is very unstable (n=1), pseudoval ues smooth it.[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6034--6034 []\T1/pcr/m/n/9 # In all the above we should be using the robust variance, e.g ., svyglm, but[] Overfull \hbox (0.78088pt too wide) in paragraph at lines 6058--6058 []\T1/pcr/m/n/10 pspline(x, df=4, theta, nterm=2.5 * df, degree=3, eps=0.1, me thod, Overfull \hbox (36.78088pt too wide) in paragraph at lines 6059--6059 [] \T1/pcr/m/n/10 Boundary.knots=range(x), intercept=FALSE, penalty=TRUE, co mbine, ...)[] [3690] [3691] [3692] Overfull \hbox (30.78088pt too wide) in paragraph at lines 6222--6222 [] \T1/pcr/m/n/10 py <- pyears(futime ~ rx, rmap=list(age=age, sex=sex, year= entry.dt),[] [3693] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6324--6324 []\T1/pcr/m/n/9 pfit <- pyears(Surv(ptime/365.25, pstat) ~ temp.yr + temp.age + sex, mgus,[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6345--6345 []\T1/pcr/m/n/9 fit1 <- pyears(Surv(stop/365.25, event) ~ cut(age + 48, c(0,50 ,60,70,100)) +[] Overfull \hbox (20.58041pt too wide) in paragraph at lines 6347--6347 []\T1/pcr/m/n/9 fit2 <- pyears(Surv(stop/365.25, event) ~ tcut(age + 48, c(0,5 0,60,70,100)) +[] [3694] [3695] [3696] [3697] Underfull \vbox (badness 3168) has occurred while \output is active [3698] [3699] [3700] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6801--6801 []\T1/pcr/m/n/9 gfit <- survfit(Surv(day1, day2, status) ~ batch, braking, id= locomotive)[] Overfull \hbox (42.18039pt too wide) in paragraph at lines 6803--6803 [] \T1/pcr/m/n/9 xlab="Locomotive Age in Months", ylab="Mean cumulative nu mber replacements")[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6806--6806 []\T1/pcr/m/n/9 # natural target, an estimate of the number of replacements b y a given time[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 6808--6808 []\T1/pcr/m/n/9 # When two valve seats failed at the same inspection, we need to jitter one[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 6810--6810 []\T1/pcr/m/n/9 ties <- which(with(valveSeat, diff(id)==0 & diff(time)==0)) # first of a tie[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 6814--6814 []\T1/pcr/m/n/9 vdata$time1 <- ifelse(!duplicated(vdata$id), 0, c(0, temp[-len gth(temp)]))[] Overfull \hbox (42.78088pt too wide) in paragraph at lines 6841--6841 [] \T1/pcr/m/n/10 collapse=FALSE, weighted= (type %in% c("dfbeta", "dfbe tas")), ...)[] [3701] [3702] Overfull \hbox (36.78088pt too wide) in paragraph at lines 6935--6935 [] \T1/pcr/m/n/10 type="pstate", collapse=FALSE, weighted= collapse, data.f rame=FALSE,[] [3703] Overfull \hbox (6.78088pt too wide) in paragraph at lines 7034--7034 []\T1/pcr/m/n/10 residuals(object, type=c("response", "deviance","dfbeta","dfb etas",[] Underfull \hbox (badness 1043) in paragraph at lines 7046--7049 []\T1/pcr/m/n/10 "dfbetas"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "working"[]\T1/pt m/m/n/10 , []\T1/pcr/m/n/10 "ldcase"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lsresp "[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ldshape"[]\T1/ptm/m/n/10 , and [3704] [3705] [3706] [3707] [3708] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7353--7353 []\T1/pcr/m/n/9 lfit1 <- survreg(Surv(time, status) ~ age + ridge(ph.ecog, the ta=5), lung)[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 7354--7354 []\T1/pcr/m/n/9 lfit2 <- survreg(Surv(time, status) ~ sex + ridge(age, ph.ecog , theta=1), lung)[] [3709] [3710] [3711] Overfull \hbox (72.78088pt too wide) in paragraph at lines 7544--7544 []\T1/pcr/m/n/10 rttright(formula, data, weights, subset, na.action, times, id , timefix = TRUE, [3712] Overfull \hbox (42.18039pt too wide) in paragraph at lines 7627--7627 []\T1/pcr/m/n/9 cdf <- cdf[!duplicated(aml$time[index], fromLast=TRUE)] # rem ove duplicate times[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 7631--7631 []\T1/pcr/m/n/9 wt2 <- rttright(Surv(dtime, death) ~ hormon, rotterdam, times= 365*c(3, 5))[] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solder}) has been already used, duplicate ignored \relax l.7635 ...ata from a soldering experiment}{solder} [3713] Overfull \hbox (4.38043pt too wide) in paragraph at lines 7690--7690 []\T1/pcr/m/n/9 dummy <- expand.grid(Opening= c("S", "M", "L"), Solder=c("Thin ", "Thick"))[] Overfull \hbox (36.7804pt too wide) in paragraph at lines 7692--7692 [] \T1/pcr/m/n/9 dimnames=list(Opening= c("S", "M", "L"), Solder=c( "Thin", "Thick")))[] [3714] Overfull \hbox (24.78088pt too wide) in paragraph at lines 7752--7752 []\T1/pcr/m/n/10 statefig(layout, connect, margin = 0.03, box = TRUE, cex = 1, col = 1, [3715] [3716] [3717] [3718] [3719] Overfull \hbox (42.78088pt too wide) in paragraph at lines 8118--8118 []\T1/pcr/m/n/10 event = TRUE, pyears = TRUE, expected = TRUE, rate = FALSE, r r =expected,[] Overfull \hbox (36.78088pt too wide) in paragraph at lines 8119--8119 []\T1/pcr/m/n/10 ci.r = FALSE, ci.rr = FALSE, totals=FALSE, legend = TRUE, vli ne = FALSE,[] [3720] [3721] [3722] Overfull \hbox (78.78088pt too wide) in paragraph at lines 8277--8277 [] \T1/pcr/m/n/10 extend=FALSE, rmean=getOption(\TS1/pcr/m/n/10 '\T1/pcr/m/n/ 10 survfit.rmean\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 ), data.frame=FALSE, dosum, ... )[] Overfull \hbox (36.78088pt too wide) in paragraph at lines 8280--8280 [] \T1/pcr/m/n/10 extend=FALSE, rmean=getOption(\TS1/pcr/m/n/10 '\T1/pcr/m/n/ 10 survfit.rmean\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 ), data.frame=FALSE, ...)[] [3723] [3724] Overfull \hbox (54.78088pt too wide) in paragraph at lines 8471--8471 [] \T1/pcr/m/n/10 type=c(\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 right\TS1/pcr/m/n/ 10 '\T1/pcr/m/n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 left\TS1/pcr/m/n/10 '\T1/p cr/m/n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 interval\TS1/pcr/m/n/10 '\T1/pcr/m/ n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 counting\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 interval2\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 , \T S1/pcr/m/n/10 '\T1/pcr/m/n/10 mstate\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 ),[] [3725] [3726] [3727] Underfull \hbox (badness 1253) in paragraph at lines 8750--8753 []\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 median[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 quantile []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 plot []\T1/ptm/m/n/10 meth-ods first con-struct a sur-vival curve us-ing [3728] [3729] Overfull \hbox (30.78088pt too wide) in paragraph at lines 8889--8889 []\T1/pcr/m/n/10 survcheck(formula, data, subset, na.action, id, istate, istat e0="(s0)", [3730] [3731] Overfull \hbox (12.78088pt too wide) in paragraph at lines 9021--9021 []\T1/pcr/m/n/10 survcondense(formula, data, subset, weights, na.action= na.pa ss, id, [3732] [3733] [3734] Overfull \hbox (9.78043pt too wide) in paragraph at lines 9221--9221 []\T1/pcr/m/n/9 check <- coxph(Surv(time, status) ~ factor(pat.karno) + strata (inst), lung)[] [3735] Overfull \hbox (36.7804pt too wide) in paragraph at lines 9227--9227 [] \T1/pcr/m/n/9 rmap= list(age=(accept.dt - birth.dt), sex=1 , year=accept.dt),[] Overfull \hbox (24.78088pt too wide) in paragraph at lines 9252--9252 [] \T1/pcr/m/n/10 method=c("ederer", "hakulinen", "conditional", "indiv idual.h",[] Underfull \hbox (badness 1038) in paragraph at lines 9294--9300 []\T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre -dicted sur-vival [3736] Overfull \hbox (48.78088pt too wide) in paragraph at lines 9346--9346 [] \T1/pcr/m/n/10 rmap = list(year=entry.dt, age=(birth.d t-entry.dt)),[] [3737] Overfull \hbox (4.38043pt too wide) in paragraph at lines 9432--9432 []\T1/pcr/m/n/9 summary(fit1, times=1:10*182.5, scale=365) #expected survival by 1/2 years[] [3738] [3739] [3740] Underfull \hbox (badness 10000) in paragraph at lines 9652--9657 [][][]\T1/pcr/m/n/10 survfit.formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/ 10 survfit.coxph[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 survfit.object[][ ][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.survfit[][][][]\T1/ptm/m/n/10 , [3741] Overfull \hbox (12.78088pt too wide) in paragraph at lines 9672--9672 [] \T1/pcr/m/n/10 se.fit=TRUE, conf.int=.95, individual=FALSE, stype=2, ctype,[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 9673--9673 [] \T1/pcr/m/n/10 conf.type=c("log","log-log","plain","none", "logit", "arcsin"),[] Overfull \hbox (18.78088pt too wide) in paragraph at lines 9678--9678 [] \T1/pcr/m/n/10 se.fit=FALSE, conf.int=.95, individual=FALSE, stype=2 , ctype,[] Overfull \hbox (30.78088pt too wide) in paragraph at lines 9679--9679 [] \T1/pcr/m/n/10 conf.type=c("log","log-log","plain","none", "logit", "arcsin"),[] [3742] [3743] [3744] Overfull \hbox (12.78088pt too wide) in paragraph at lines 9901--9901 [] \T1/pcr/m/n/10 stype=1, ctype=1, id, cluster, robust, istate, timefi x=TRUE,[] [3745] Underfull \hbox (badness 4441) in paragraph at lines 10042--10052 []\T1/ptm/m/n/10 by de-fault, the surv-fit rou-tines only re-turn in-for-ma-tio n at the [3746] Underfull \hbox (badness 2653) in paragraph at lines 10054--10059 \T1/pcr/m/n/10 ctype=1[]\T1/ptm/m/n/10 , "fleming-harrington" which is equiv-a- lent to []\T1/pcr/m/n/10 stype=2, [3747] [3748] Overfull \hbox (4.38043pt too wide) in paragraph at lines 10242--10242 []\T1/pcr/m/n/9 # There are no interval censored subjects, only left-censored (status=3),[] [3749] [3750] [3751] [3752] [3753] Overfull \hbox (30.78088pt too wide) in paragraph at lines 10674--10674 []\T1/pcr/m/n/10 survfitcoxph.fit(y, x, wt, x2, risk, newrisk, strata, se.fit, survtype, [3754] Underfull \hbox (badness 1354) in paragraph at lines 10715--10719 []\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th e time range [3755] Overfull \hbox (60.78088pt too wide) in paragraph at lines 10761--10761 []\T1/pcr/m/n/10 survConcordance(formula, data, weights, subset, na.action) # use concordance [3756] [3757] Underfull \hbox (badness 2035) in paragraph at lines 10925--10932 \T1/ptm/m/n/10 it is as-sumed to name an el-e-ment from [][][]\T1/pcr/m/n/10 su rvreg.distributions[][][][]\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 10925--10932 \T1/ptm/m/n/10 These in-clude []\T1/pcr/m/n/10 "weibull"[]\T1/ptm/m/n/10 , []\T 1/pcr/m/n/10 "exponential"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "gaussian"[]\T1/p tm/m/n/10 , Underfull \hbox (badness 1297) in paragraph at lines 10925--10932 []\T1/pcr/m/n/10 "logistic"[]\T1/ptm/m/n/10 ,[]\T1/pcr/m/n/10 "lognormal" []\T1 /ptm/m/n/10 and []\T1/pcr/m/n/10 "loglogistic"[]\T1/ptm/m/n/10 . Oth-er-wise, i t is [3758] Overfull \hbox (20.58041pt too wide) in paragraph at lines 11015--11015 []\T1/pcr/m/n/9 # There are multiple ways to parameterize a Weibull distributi on. The survreg[] [3759] [3760] [3761] Overfull \hbox (31.3804pt too wide) in paragraph at lines 11172--11172 [] \T1/pcr/m/n/9 deviance= function(...) stop(\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 deviance residuals not defined\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )[] [3762] [3763] Overfull \hbox (4.38043pt too wide) in paragraph at lines 11304--11304 [] \T1/pcr/m/n/9 temp/pi, -2 *x*temp, 2*temp^2*(4*x ^2*temp -1))[] Overfull \hbox (31.3804pt too wide) in paragraph at lines 11307--11307 [] \T1/pcr/m/n/9 deviance= function(...) stop(\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 deviance residuals not defined\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )[] [3764] [3765] Overfull \hbox (9.78043pt too wide) in paragraph at lines 11483--11483 []\T1/pcr/m/n/9 pfit2 <- pyears(Surv(years, death) ~ fgrp + agegrp, scale =100 0, data=test)[] [3766] [3767] [3768] [3769] Overfull \hbox (9.78043pt too wide) in paragraph at lines 11712--11712 []\T1/pcr/m/n/9 # The first data set contains data on 312 subjects in a clinic al trial plus[] Overfull \hbox (9.78043pt too wide) in paragraph at lines 11713--11713 []\T1/pcr/m/n/9 # 106 that agreed to be followed off protocol, the second data set has data[] Overfull \hbox (4.38043pt too wide) in paragraph at lines 11719--11719 [] \T1/pcr/m/n/9 protime = tdc(day, protime), alk.phos = tdc(day , alk.phos))[] Overfull \hbox (15.18042pt too wide) in paragraph at lines 11721--11721 []\T1/pcr/m/n/9 fit <- coxph(Surv(tstart, tstop, endpt==2) ~ protime + log(bil i), data=pbc2)[] [3770] [3771] [3772] [3773] [3774] [3775] [3776] Overfull \hbox (12.78088pt too wide) in paragraph at lines 12162--12162 []\T1/pcr/m/n/10 levels, test = c("global", "trend", "pairwise"), predict = "l inear",[] [3777] [3778] [3779]) [3780] (./fullrefman.ind [3781] [3782] [3783] [3784] [3785] [3786] [3787] [3788] [3789] [3790] [3791] [3792] [3793] [3794] [3795] [3796] [3797] [3798] [3799] [3800] [3801] [3802] [3803] [3804] [3805] [3806] [3807] Overfull \hbox (19.3567pt too wide) in paragraph at lines 2878--2880 []| \T1/pcr/m/n/10 smooth.construct.ad.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 2880--2882 []| \T1/pcr/m/n/10 smooth.construct.bs.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 2882--2884 []| \T1/pcr/m/n/10 smooth.construct.cr.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 2884--2886 []| \T1/pcr/m/n/10 smooth.construct.ds.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 2886--2888 []| \T1/pcr/m/n/10 smooth.construct.fs.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 2888--2890 []| \T1/pcr/m/n/10 smooth.construct.gp.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (25.3567pt too wide) in paragraph at lines 2890--2892 []| \T1/pcr/m/n/10 smooth.construct.mrf.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 2892--2894 []| \T1/pcr/m/n/10 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smooth.construct.tp.smooth.spec\T1/ptm/m/n/10 , [3809] [3810] [3811] [3812] [3813] [3814] Overfull \hbox (19.3567pt too wide) in paragraph at lines 3532--3534 []| \T1/pcr/m/n/10 smooth.construct.ad.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 3534--3536 []| \T1/pcr/m/n/10 smooth.construct.bs.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 3536--3538 []| \T1/pcr/m/n/10 smooth.construct.cr.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 3538--3540 []| \T1/pcr/m/n/10 smooth.construct.ds.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 3540--3542 []| \T1/pcr/m/n/10 smooth.construct.fs.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 3542--3544 []| \T1/pcr/m/n/10 smooth.construct.gp.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (25.3567pt too wide) in paragraph at lines 3544--3546 []| \T1/pcr/m/n/10 smooth.construct.mrf.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 3546--3548 []| \T1/pcr/m/n/10 smooth.construct.ps.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 3548--3550 []| \T1/pcr/m/n/10 smooth.construct.re.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 3550--3552 []| \T1/pcr/m/n/10 smooth.construct.so.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (25.3567pt too wide) in paragraph at lines 3552--3554 []| \T1/pcr/m/n/10 smooth.construct.sos.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 3554--3556 []| \T1/pcr/m/n/10 smooth.construct.sz.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 3556--3558 []| \T1/pcr/m/n/10 smooth.construct.t2.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (43.3567pt too wide) in paragraph at lines 3558--3560 []| \T1/pcr/m/n/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (19.3567pt too wide) in paragraph at lines 3560--3562 []| \T1/pcr/m/n/10 smooth.construct.tp.smooth.spec\T1/ptm/m/n/10 , [3815] Overfull \hbox (19.3567pt too wide) in paragraph at lines 3718--3720 []| \T1/pcr/m/n/10 smooth.construct.so.smooth.spec\T1/ptm/m/n/10 , [3816] [3817] [3818] [3819] [3820] [3821] [3822] [3823] [3824] [3825] Overfull \hbox (20.8567pt too wide) in paragraph at lines 4972--4974 []\T1/pcr/m/n/10 [,Matrix,index,index,logical-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 4974--4976 []\T1/pcr/m/n/10 [,Matrix,index,index,missing-method Overfull \hbox (32.8567pt too wide) in paragraph at lines 4976--4978 []\T1/pcr/m/n/10 [,Matrix,index,missing,logical-method Overfull \hbox (32.8567pt too wide) in paragraph at lines 4978--4980 []\T1/pcr/m/n/10 [,Matrix,index,missing,missing-method Overfull \hbox (44.8567pt too wide) in paragraph at lines 4980--4982 []\T1/pcr/m/n/10 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6293--6295 []\T1/pcr/m/n/10 Arith,dsparseVector,dsparseVector-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 6295--6297 []\T1/pcr/m/n/10 Arith,dtCMatrix,dtCMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 6301--6303 []\T1/pcr/m/n/10 Arith,lgCMatrix,lgCMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 6303--6305 []\T1/pcr/m/n/10 Arith,lgeMatrix,lgeMatrix-method [3835] Overfull \hbox (2.8567pt too wide) in paragraph at lines 6305--6307 []\T1/pcr/m/n/10 Arith,lgTMatrix,lgTMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 6311--6313 []\T1/pcr/m/n/10 Arith,logical,ddenseMatrix-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 6323--6325 []\T1/pcr/m/n/10 Arith,logical,dsparseMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 6331--6333 []\T1/pcr/m/n/10 Arith,lsparseMatrix,Matrix-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 6333--6335 []\T1/pcr/m/n/10 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\hbox (10.01662pt too wide) in paragraph at lines 7515--7517 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/ ptm/m/n/10 , [3842] [3843] Overfull \hbox (2.8567pt too wide) in paragraph at lines 7995--7997 []\T1/pcr/m/n/10 chol2inv,triangularMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 8038--8040 []\T1/pcr/m/n/10 Cholesky,triangularMatrix-method [3844] Overfull \hbox (10.01662pt too wide) in paragraph at lines 8045--8047 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/ ptm/m/n/10 , [3845] [3846] Overfull \hbox (26.8567pt too wide) in paragraph at lines 8556--8558 []\T1/pcr/m/n/10 coerce,BunchKaufman,dtrMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 8558--8560 []\T1/pcr/m/n/10 coerce,CHMsimpl,dtCMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 8560--8562 []\T1/pcr/m/n/10 coerce,CHMsuper,dgCMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at 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coerce,factor,sparseMatrix-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 8598--8600 []\T1/pcr/m/n/10 coerce,generalMatrix,packedMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 8600--8602 []\T1/pcr/m/n/10 coerce,graph,CsparseMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 8604--8606 []\T1/pcr/m/n/10 coerce,graph,RsparseMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 8606--8608 []\T1/pcr/m/n/10 coerce,graph,sparseMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 8608--8610 []\T1/pcr/m/n/10 coerce,graph,TsparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 8610--8612 []\T1/pcr/m/n/10 coerce,graphAM,TsparseMatrix-method Overfull \hbox (26.8567pt too wide) in paragraph at lines 8612--8614 []\T1/pcr/m/n/10 coerce,graphNEL,TsparseMatrix-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 8628--8630 []\T1/pcr/m/n/10 coerce,Matrix,CsparseMatrix-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 8630--8632 []\T1/pcr/m/n/10 coerce,matrix,CsparseMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 8632--8634 []\T1/pcr/m/n/10 coerce,Matrix,ddenseMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 8634--8636 []\T1/pcr/m/n/10 coerce,matrix,ddenseMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 8636--8638 []\T1/pcr/m/n/10 coerce,Matrix,denseMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 8638--8640 []\T1/pcr/m/n/10 coerce,matrix,denseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 8642--8644 []\T1/pcr/m/n/10 coerce,Matrix,diagonalMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 8644--8646 []\T1/pcr/m/n/10 coerce,matrix,diagonalMatrix-method [3848] Overfull \hbox (14.8567pt too wide) in paragraph at lines 8658--8660 []\T1/pcr/m/n/10 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coerce,sparseVector,CsparseMatrix-method Overfull \hbox (38.8567pt too wide) in paragraph at lines 8808--8810 []\T1/pcr/m/n/10 coerce,sparseVector,denseMatrix-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 8810--8812 []\T1/pcr/m/n/10 coerce,sparseVector,dsparseVector-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 8812--8814 []\T1/pcr/m/n/10 coerce,sparseVector,generalMatrix-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 8814--8816 []\T1/pcr/m/n/10 coerce,sparseVector,isparseVector-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 8816--8818 []\T1/pcr/m/n/10 coerce,sparseVector,lsparseVector-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 8818--8820 []\T1/pcr/m/n/10 coerce,sparseVector,Matrix-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 8820--8822 []\T1/pcr/m/n/10 coerce,sparseVector,nsparseVector-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 8822--8824 []\T1/pcr/m/n/10 coerce,sparseVector,RsparseMatrix-method Overfull \hbox (44.8567pt too wide) in paragraph at lines 8824--8826 []\T1/pcr/m/n/10 coerce,sparseVector,sparseMatrix-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 8826--8828 []\T1/pcr/m/n/10 coerce,sparseVector,TsparseMatrix-method Overfull \hbox (56.8567pt too wide) in paragraph at lines 8828--8830 []\T1/pcr/m/n/10 coerce,sparseVector,unpackedMatrix-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 8830--8832 []\T1/pcr/m/n/10 coerce,sparseVector,zsparseVector-method Overfull \hbox (26.8567pt too wide) in paragraph at lines 8832--8834 []\T1/pcr/m/n/10 coerce,TsparseMatrix,graphNEL-method [3850] Overfull \hbox (14.8567pt too wide) in paragraph at lines 8834--8836 []\T1/pcr/m/n/10 coerce,vector,CsparseMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 8836--8838 []\T1/pcr/m/n/10 coerce,vector,ddenseMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 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coerce,vector,ndenseMatrix-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 8864--8866 []\T1/pcr/m/n/10 coerce,vector,nsparseMatrix-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 8866--8868 []\T1/pcr/m/n/10 coerce,vector,nsparseVector-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 8868--8870 []\T1/pcr/m/n/10 coerce,vector,RsparseMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 8870--8872 []\T1/pcr/m/n/10 coerce,vector,sparseMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 8872--8874 []\T1/pcr/m/n/10 coerce,vector,sparseVector-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 8874--8876 []\T1/pcr/m/n/10 coerce,vector,TsparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 8876--8878 []\T1/pcr/m/n/10 coerce,vector,unpackedMatrix-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 8878--8880 []\T1/pcr/m/n/10 coerce,vector,zsparseVector-method [3851] Overfull \hbox (62.8567pt too wide) in paragraph at lines 9004--9006 []\T1/pcr/m/n/10 Compare,CsparseMatrix,CsparseMatrix-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 9010--9012 []\T1/pcr/m/n/10 Compare,lgeMatrix,lgeMatrix-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 9022--9024 []\T1/pcr/m/n/10 Compare,ngeMatrix,ngeMatrix-method Overfull \hbox (86.8567pt too wide) in paragraph at lines 9036--9038 []\T1/pcr/m/n/10 Compare,triangularMatrix,diagonalMatrix-method [3852] [3853] [3854] Overfull \hbox (8.8567pt too wide) in paragraph at lines 9586--9588 []\T1/pcr/m/n/10 crossprod,ANY,sparseVector-method Overfull \hbox (74.8567pt too wide) in paragraph at lines 9588--9590 []\T1/pcr/m/n/10 crossprod,CsparseMatrix,CsparseMatrix-method Overfull \hbox (62.8567pt too wide) in paragraph at lines 9590--9592 []\T1/pcr/m/n/10 crossprod,CsparseMatrix,denseMatrix-method Overfull \hbox (80.8567pt too wide) in paragraph at lines 9592--9594 []\T1/pcr/m/n/10 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10650--10652 []\T1/pcr/m/n/10 dimnames<-,symmetricMatrix,list-method Overfull \hbox (38.8567pt too wide) in paragraph at lines 10652--10654 []\T1/pcr/m/n/10 dimnames<-,symmetricMatrix,NULL-method [3860] [3861] Overfull \hbox (46.01662pt too wide) in paragraph at lines 11004--11006 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.ds.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3862] [3863] [3864] [3865] [3866] Overfull \hbox (80.8567pt too wide) in paragraph at lines 11990--11992 []\T1/pcr/m/n/10 forceSymmetric,CsparseMatrix,character-method Overfull \hbox (68.8567pt too wide) in paragraph at lines 11992--11994 []\T1/pcr/m/n/10 forceSymmetric,CsparseMatrix,missing-method Overfull \hbox (68.8567pt too wide) in paragraph at lines 11994--11996 []\T1/pcr/m/n/10 forceSymmetric,denseMatrix,character-method Overfull \hbox (56.8567pt too wide) in paragraph at lines 11996--11998 []\T1/pcr/m/n/10 forceSymmetric,denseMatrix,missing-method Overfull \hbox (86.8567pt too wide) in paragraph at lines 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Logic,dMatrix,sparseVector-method Overfull \hbox (44.8567pt too wide) in paragraph at lines 15491--15493 []\T1/pcr/m/n/10 Logic,ldenseMatrix,lsparseMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 15493--15495 []\T1/pcr/m/n/10 Logic,lgCMatrix,lgCMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 15495--15497 []\T1/pcr/m/n/10 Logic,lgeMatrix,lgeMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 15497--15499 []\T1/pcr/m/n/10 Logic,lgTMatrix,lgTMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 15503--15505 []\T1/pcr/m/n/10 Logic,lMatrix,sparseVector-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 15511--15513 []\T1/pcr/m/n/10 Logic,lsCMatrix,lsCMatrix-method Overfull \hbox (44.8567pt too wide) in paragraph at lines 15513--15515 []\T1/pcr/m/n/10 Logic,lsparseMatrix,ldenseMatrix-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 15515--15517 []\T1/pcr/m/n/10 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Logic,sparseVector,sparseVector-method Overfull \hbox (74.8567pt too wide) in paragraph at lines 15551--15553 []\T1/pcr/m/n/10 Logic,triangularMatrix,diagonalMatrix-method [3884] [3885] Overfull \hbox (10.01662pt too wide) in paragraph at lines 15861--15863 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/ ptm/m/n/10 , [3886] [3887] [3888] Overfull \hbox (52.01662pt too wide) in paragraph at lines 16644--16646 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.mrf.smooth.spec\T1/ptm/m/it/1 0 )\T1/ptm/m/n/10 , [3889] [3890] [3891] Overfull \hbox (8.8567pt too wide) in paragraph at lines 17255--17257 []\T1/pcr/m/n/10 nonstandardGenericWithTrace-class Overfull \hbox (8.8567pt too wide) in paragraph at lines 17276--17278 []\T1/pcr/m/n/10 norm,denseMatrix,character-method Overfull \hbox (26.8567pt too wide) in paragraph at lines 17278--17280 []\T1/pcr/m/n/10 norm,diagonalMatrix,character-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 17284--17286 []\T1/pcr/m/n/10 norm,sparseMatrix,character-method [3892] Overfull \hbox (8.8567pt too wide) in paragraph at lines 17583--17585 []\T1/pcr/m/n/10 Ops,ddiMatrix,sparseMatrix-method Overfull \hbox (62.8567pt too wide) in paragraph at lines 17585--17587 []\T1/pcr/m/n/10 Ops,diagonalMatrix,triangularMatrix-method [3893] Overfull \hbox (38.8567pt too wide) in paragraph at lines 17605--17607 []\T1/pcr/m/n/10 Ops,dsparseMatrix,nsparseMatrix-method Overfull \hbox (26.8567pt too wide) in paragraph at lines 17607--17609 []\T1/pcr/m/n/10 Ops,ldenseMatrix,ldenseMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 17625--17627 []\T1/pcr/m/n/10 Ops,ldiMatrix,sparseMatrix-method Overfull \hbox (38.8567pt too wide) in paragraph at lines 17639--17641 []\T1/pcr/m/n/10 Ops,lsparseMatrix,lsparseMatrix-method Overfull \hbox (38.8567pt too wide) in paragraph at lines 17641--17643 []\T1/pcr/m/n/10 Ops,lsparseMatrix,nsparseMatrix-method Overfull \hbox (26.8567pt too wide) in paragraph at lines 17659--17661 []\T1/pcr/m/n/10 Ops,ndenseMatrix,ndenseMatrix-method Overfull \hbox (26.8567pt too wide) in paragraph at lines 17675--17677 []\T1/pcr/m/n/10 Ops,nonStructure,nonStructure-method Overfull \hbox (38.8567pt too wide) in paragraph at lines 17679--17681 []\T1/pcr/m/n/10 Ops,nsparseMatrix,dsparseMatrix-method Overfull \hbox (38.8567pt too wide) in paragraph at lines 17681--17683 []\T1/pcr/m/n/10 Ops,nsparseMatrix,lsparseMatrix-method Overfull \hbox (32.8567pt too wide) in paragraph at lines 17683--17685 []\T1/pcr/m/n/10 Ops,nsparseMatrix,sparseMatrix-method [3894] Overfull \hbox (8.8567pt too wide) in paragraph at lines 17697--17699 []\T1/pcr/m/n/10 Ops,sparseMatrix,ddiMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 17699--17701 []\T1/pcr/m/n/10 Ops,sparseMatrix,ldiMatrix-method Overfull \hbox (32.8567pt too wide) in paragraph at lines 17701--17703 []\T1/pcr/m/n/10 Ops,sparseMatrix,nsparseMatrix-method Overfull \hbox (26.8567pt too wide) in paragraph at lines 17705--17707 []\T1/pcr/m/n/10 Ops,sparseMatrix,sparseMatrix-method Overfull \hbox (26.8567pt too wide) in paragraph at lines 17713--17715 []\T1/pcr/m/n/10 Ops,sparseVector,sparseVector-method Overfull \hbox (46.01662pt too wide) in paragraph at lines 17927--17929 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3895] Overfull \hbox (77.3567pt too wide) in paragraph at lines 17962--17964 []\T1/pcr/m/n/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , [3896] [3897] [3898] [3899] [3900] [3901] Overfull \hbox (46.01662pt too wide) in paragraph at lines 19319--19321 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (4.01662pt too wide) in paragraph at lines 19322--19324 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 Predict.matrix.cr.smooth\T1/ptm/m/it/10 )\T1/p tm/m/n/10 , Overfull \hbox (4.01662pt too wide) in paragraph at lines 19324--19326 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 Predict.matrix.cr.smooth\T1/ptm/m/it/10 )\T1/p tm/m/n/10 , Overfull \hbox (46.01662pt too wide) in paragraph at lines 19326--19328 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.ds.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (46.01662pt too wide) in paragraph at lines 19328--19330 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.fs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (46.01662pt too wide) in paragraph at lines 19330--19332 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.gp.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (52.01662pt too wide) in paragraph at lines 19332--19334 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.mrf.smooth.spec\T1/ptm/m/it/1 0 )\T1/ptm/m/n/10 , Overfull \hbox (4.01662pt too wide) in paragraph at lines 19334--19336 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 Predict.matrix.cr.smooth\T1/ptm/m/it/10 )\T1/p tm/m/n/10 , Overfull \hbox (46.01662pt too wide) in paragraph at lines 19336--19338 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.re.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (4.01662pt too wide) in paragraph at lines 19338--19340 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 Predict.matrix.soap.film\T1/ptm/m/it/10 )\T1/p tm/m/n/10 , Overfull \hbox (52.01662pt too wide) in paragraph at lines 19342--19344 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.sos.smooth.spec\T1/ptm/m/it/1 0 )\T1/ptm/m/n/10 , Overfull \hbox (4.01662pt too wide) in paragraph at lines 19344--19346 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 Predict.matrix.soap.film\T1/ptm/m/it/10 )\T1/p tm/m/n/10 , Overfull \hbox (46.01662pt too wide) in paragraph at lines 19346--19348 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.sz.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (4.01662pt too wide) in paragraph at lines 19348--19350 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 Predict.matrix.cr.smooth\T1/ptm/m/it/10 )\T1/p tm/m/n/10 , Overfull \hbox (4.01662pt too wide) in paragraph at lines 19350--19352 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 Predict.matrix.cr.smooth\T1/ptm/m/it/10 )\T1/p tm/m/n/10 , Overfull \hbox (4.01662pt too wide) in paragraph at lines 19352--19354 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 Predict.matrix.cr.smooth\T1/ptm/m/it/10 )\T1/p tm/m/n/10 , Overfull \hbox (4.01662pt too wide) in paragraph at lines 19354--19356 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 Predict.matrix.cr.smooth\T1/ptm/m/it/10 )\T1/p tm/m/n/10 , [3902] [3903] Overfull \hbox (4.01662pt too wide) in paragraph at lines 19708--19710 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 getDLLRegisteredRoutines\T1/ptm/m/it/10 )\T1/p tm/m/n/10 , Overfull \hbox (4.01662pt too wide) in paragraph at lines 19782--19784 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 getDLLRegisteredRoutines\T1/ptm/m/it/10 )\T1/p tm/m/n/10 , [3904] [3905] [3906] Overfull \hbox (10.01662pt too wide) in paragraph at lines 20249--20251 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/ ptm/m/n/10 , Overfull \hbox (8.8567pt too wide) in paragraph at lines 20255--20257 []\T1/pcr/m/n/10 qr.coef,sparseQR,dgeMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 20265--20267 []\T1/pcr/m/n/10 qr.fitted,sparseQR,dgeMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 20267--20269 []\T1/pcr/m/n/10 qr.fitted,sparseQR,Matrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 20269--20271 []\T1/pcr/m/n/10 qr.fitted,sparseQR,matrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 20271--20273 []\T1/pcr/m/n/10 qr.fitted,sparseQR,vector-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 20283--20285 []\T1/pcr/m/n/10 qr.qty,sparseQR,dgeMatrix-method [3907] Overfull \hbox (14.8567pt too wide) in paragraph at lines 20308--20310 []\T1/pcr/m/n/10 qr.resid,sparseQR,dgeMatrix-method Overfull \hbox (62.8567pt too wide) in paragraph at lines 20444--20446 []\T1/pcr/m/n/10 R_AVAILABLE_PACKAGES_CACHE_CONTROL_MAX_AGE [3908] [3909] Overfull \hbox (14.8567pt too wide) in paragraph at lines 20728--20730 []\T1/pcr/m/n/10 rcond,denseMatrix,character-method Overfull \hbox (32.8567pt too wide) in paragraph at lines 20730--20732 []\T1/pcr/m/n/10 rcond,diagonalMatrix,character-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 20732--20734 []\T1/pcr/m/n/10 rcond,indMatrix,character-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 20736--20738 []\T1/pcr/m/n/10 rcond,sparseMatrix,character-method [3910] [3911] [3912] [3913] [3914] Overfull \hbox (10.01662pt too wide) in paragraph at lines 21756--21758 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/ ptm/m/n/10 , [3915] Overfull \hbox (32.8567pt too wide) in paragraph at lines 22122--22124 []\T1/pcr/m/n/10 show,BunchKaufmanFactorization-method Overfull \hbox (10.01662pt too wide) in paragraph at lines 22122--22124 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/ ptm/m/n/10 , Overfull \hbox (8.8567pt too wide) in paragraph at lines 22124--22126 []\T1/pcr/m/n/10 show,CholeskyFactorization-method Overfull \hbox (10.01662pt too wide) in paragraph at lines 22124--22126 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/ ptm/m/n/10 , [3916] Overfull \hbox (26.8567pt too wide) in paragraph at lines 22138--22140 []\T1/pcr/m/n/10 show,genericFunctionWithTrace-method Overfull \hbox (10.01662pt too wide) in paragraph at lines 22140--22142 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/ ptm/m/n/10 , Overfull \hbox (10.01662pt too wide) in paragraph at lines 22142--22144 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/ ptm/m/n/10 , Overfull \hbox (32.8567pt too wide) in paragraph at lines 22146--22148 []\T1/pcr/m/n/10 show,MethodDefinitionWithTrace-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 22150--22152 []\T1/pcr/m/n/10 show,MethodWithNextWithTrace-method Overfull \hbox (10.01662pt too wide) in paragraph at lines 22156--22158 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/ ptm/m/n/10 , Overfull \hbox (14.8567pt too wide) in paragraph at lines 22158--22160 []\T1/pcr/m/n/10 show,refClassRepresentation-method Overfull \hbox (10.01662pt too wide) in paragraph at lines 22164--22166 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/ ptm/m/n/10 , [3917] Overfull \hbox (46.01662pt too wide) in paragraph at lines 22405--22407 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (46.01662pt too wide) in paragraph at lines 22407--22409 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (46.01662pt too wide) in paragraph at lines 22410--22412 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (5.3567pt too wide) in paragraph at lines 22418--22419 []\T1/pcr/m/n/10 smooth.construct.mrf.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (46.01662pt too wide) in paragraph at lines 22427--22429 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.so.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (5.3567pt too wide) in paragraph at lines 22431--22432 []\T1/pcr/m/n/10 smooth.construct.sos.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (46.01662pt too wide) in paragraph at lines 22432--22434 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.so.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3918] Overfull \hbox (23.3567pt too wide) in paragraph at lines 22439--22443 []\T1/pcr/m/n/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , Overfull \hbox (46.01662pt too wide) in paragraph at lines 22444--22446 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.tp.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (46.01662pt too wide) in paragraph at lines 22497--22499 \T1/ptm/m/it/10 (\T1/pcr/m/sl/10 smooth.construct.so.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (20.8567pt too wide) in paragraph at lines 22532--22534 []\T1/pcr/m/n/10 solve,BunchKaufman,dgeMatrix-method Overfull \hbox (8.8567pt too wide) in paragraph at lines 22534--22536 []\T1/pcr/m/n/10 solve,BunchKaufman,missing-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 22536--22538 []\T1/pcr/m/n/10 solve,CHMfactor,dgCMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 22538--22540 []\T1/pcr/m/n/10 solve,CHMfactor,dgeMatrix-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 22562--22564 []\T1/pcr/m/n/10 solve,dgCMatrix,denseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 22568--22570 []\T1/pcr/m/n/10 solve,dgCMatrix,sparseMatrix-method Overfull \hbox (14.8567pt too wide) in paragraph at lines 22580--22582 []\T1/pcr/m/n/10 solve,dsCMatrix,denseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 22586--22588 []\T1/pcr/m/n/10 solve,dsCMatrix,sparseMatrix-method [3919] Overfull \hbox (2.8567pt too wide) in paragraph at lines 22594--22596 []\T1/pcr/m/n/10 solve,dtCMatrix,dgCMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 22596--22598 []\T1/pcr/m/n/10 solve,dtCMatrix,dgeMatrix-method Overfull \hbox (44.8567pt too wide) in paragraph at lines 22600--22602 []\T1/pcr/m/n/10 solve,dtCMatrix,triangularMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 22602--22604 []\T1/pcr/m/n/10 solve,dtpMatrix,dgeMatrix-method Overfull \hbox (44.8567pt too wide) in paragraph at lines 22606--22608 []\T1/pcr/m/n/10 solve,dtpMatrix,triangularMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 22608--22610 []\T1/pcr/m/n/10 solve,dtrMatrix,dgeMatrix-method Overfull \hbox (44.8567pt too wide) in paragraph at lines 22612--22614 []\T1/pcr/m/n/10 solve,dtrMatrix,triangularMatrix-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 22618--22620 []\T1/pcr/m/n/10 solve,Matrix,sparseVector-method Overfull \hbox (2.8567pt too wide) in paragraph at lines 22620--22622 []\T1/pcr/m/n/10 solve,matrix,sparseVector-method Overfull \hbox (86.8567pt too wide) in paragraph at lines 22622--22624 []\T1/pcr/m/n/10 solve,MatrixFactorization,CsparseMatrix-method Overfull \hbox (74.8567pt too wide) in paragraph at lines 22624--22626 []\T1/pcr/m/n/10 solve,MatrixFactorization,denseMatrix-method Overfull \hbox (62.8567pt too wide) in paragraph at lines 22626--22628 []\T1/pcr/m/n/10 solve,MatrixFactorization,dgCMatrix-method Overfull \hbox (62.8567pt too wide) in paragraph at lines 22628--22630 []\T1/pcr/m/n/10 solve,MatrixFactorization,dgeMatrix-method Overfull \hbox (92.8567pt too wide) in paragraph at lines 22630--22632 []\T1/pcr/m/n/10 solve,MatrixFactorization,diagonalMatrix-method Overfull \hbox (62.8567pt too wide) in paragraph at lines 22632--22634 []\T1/pcr/m/n/10 solve,MatrixFactorization,indMatrix-method Overfull \hbox (44.8567pt too 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Transcript written on fullrefman.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --pdf R-FAQ.texi This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-FAQ.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.5.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/builddir/build/BUILD/R-4.5.2/doc/manual/R-defs.texi) [1{/usr/share/texlive/te xmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [-1] Chapter 1 Chapter 2 [1] Cross reference values unknown; you must run TeX again. [2] Underfull \hbox (badness 10000) in paragraph at lines 255--284 @textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https:// buildd . debian. org/ build. php? & pkg=r-base[][][]@textrm ), [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Chapter 4 [18] Chapter 5 [19] [20] [21] [22] [23] Chapter 6 [24] [25] Chapter 7 [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] Writing index file R-FAQ.fn [38] [39] [40] [41] Chapter 8 [42] Chapter 9 [43] [44] [45] (Acknowledgments) [46] [47] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (49 pages, 354511 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-FAQ.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.5.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) 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Transcript written on R-FAQ.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-FAQ.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.5.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/builddir/build/BUILD/R-4.5.2/doc/manual/R-defs.texi) [1{/usr/share/texlive/te xmf-dist/fonts/map/pdftex/updmap/pdftex.map}] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-FAQ.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-FAQ.toc) (/builddir/build/BUILD/R-4.5.2/doc/manual/R-FAQ.toc) Chapter 1 (/builddir/build/BUILD/R-4.5.2/doc/manual/R-FAQ.aux) Chapter 2 [1] [2] Underfull \hbox (badness 10000) in paragraph at lines 255--284 @textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https:// buildd . debian. org/ build. php? & pkg=r-base[][][]@textrm ), [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Chapter 4 [18] Chapter 5 [19] [20] [21] [22] [23] Chapter 6 [24] [25] Chapter 7 [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] Writing index file R-FAQ.fn [38] [39] [40] [41] Chapter 8 [42] Chapter 9 [43] [44] [45] (Acknowledgments) [46] [47] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (51 pages, 371042 bytes). Transcript written on R-FAQ.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --pdf R-admin.texi This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-admin.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.5.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/builddir/build/BUILD/R-4.5.2/doc/manual/R-defs.texi) (/builddir/build/BUILD/R-4.5.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] Cross reference values unknown; you must run TeX again. [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15] [16] Underfull \hbox (badness 10000) in paragraph at lines 1505--1509 []@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de vel[] @textrm and @texttt make [17] Chapter 4 [18] [19] Underfull \hbox (badness 10000) in paragraph at lines 1740--1750 @textrm con' build, @texttt org.R-project.arm64.R.fw.pkg[]@textrm , @texttt org .R-project.arm64.R.GUI.pkg[]@textrm , [20] Chapter 5 [21] Chapter 6 [22] [23] [24] [25] Overfull \hbox (16.31242pt too wide) in paragraph at lines 2177--2177 []@texttt FLIBS = -L/Library/Frameworks/R.framework/Resources/lib -lgfortran - lquadmath[] [26] [27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35] [36] [37] Appendix A [38] [39] Overfull \hbox (27.8098pt too wide) in paragraph at lines 3207--3207 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [40] [41] Underfull \hbox (badness 10000) in paragraph at lines 3430--3432 []@textrm Library @texttt libdeflate[] @textrm ([][]@texttt https:// github. com/ ebiggers/ libdeflate[][][]@textrm ) is used by [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] Appendix B [52] [53] [54] [55] [56] Appendix C [57] [58] [59] [60] [61] [62] Overfull \hbox (101.2292pt too wide) in paragraph at lines 5180--5180 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/arm64/pcre2-10.44-da rwin.20-arm64.tar.xz[] Overfull \hbox (83.98314pt too wide) in paragraph at lines 5182--5182 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/arm64/xz-5.6.3-darwi n.20-arm64.tar.xz[] [63] [64] Overfull \hbox (39.30717pt too wide) in paragraph at lines 5310--5310 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.3-darwin.20 -arm64.tar.gz[] Overfull \hbox (148.53224pt too wide) in paragraph at lines 5347--5347 [] @texttt could not create compact unwind for _arcoef_: registers 23 and 24 not saved contiguously in frame[] Underfull \hbox (badness 10000) in paragraph at lines 5356--5357 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ [65] [66] [67] Underfull \hbox (badness 10000) in paragraph at lines 5621--5621 [][][][][]@smalltt https:// cran. r-project. org/ bin/ macosx/ RMacOSX-FA Q. html# [68] [69] [70] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5894--5894 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0/libgfortran.5. dylib \[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5899--5899 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0/libquadmath.0. dylib \[] [71] Overfull \hbox (50.80455pt too wide) in paragraph at lines 5940--5940 []@texttt FC="/opt//gfortran/bin/gfortran -arch x86_64 -mtune=native -mmacosx- version-min=11"[] [72] (Function and variable index) [73] No file R-admin.vrs. (Environment variable index) [74] No file R-admin.ens. (Concept index) [75] No file R-admin.cps. [76] ) (see the transcript file for additional information)pdfTeX warning (dest): name {\040Tcl/Tk\040headers\040and\040libraries} has been referenced but does not ex ist, replaced by a fixed one Output written on R-admin.pdf (79 pages, 476124 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-admin.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.5.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/builddir/build/BUILD/R-4.5.2/doc/manual/R-defs.texi) (/builddir/build/BUILD/R-4.5.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-admin.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-admin.toc) (/builddir/build/BUILD/R-4.5.2/doc/manual/R-admin.toc) Chapter 1 (/builddir/build/BUILD/R-4.5.2/doc/manual/R-admin.aux) Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15] [16] Underfull \hbox (badness 10000) in paragraph at lines 1505--1509 []@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de vel[] @textrm and @texttt make [17] Chapter 4 [18] [19] Underfull \hbox (badness 10000) in paragraph at lines 1740--1750 @textrm con' build, @texttt org.R-project.arm64.R.fw.pkg[]@textrm , @texttt org .R-project.arm64.R.GUI.pkg[]@textrm , [20] Chapter 5 [21] Chapter 6 [22] [23] [24] [25] Overfull \hbox (16.31242pt too wide) in paragraph at lines 2177--2177 []@texttt FLIBS = -L/Library/Frameworks/R.framework/Resources/lib -lgfortran - lquadmath[] [26] [27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35] [36] [37] Appendix A [38] [39] Overfull \hbox (27.8098pt too wide) in paragraph at lines 3207--3207 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [40] [41] Underfull \hbox (badness 10000) in paragraph at lines 3430--3432 []@textrm Library @texttt libdeflate[] @textrm ([][]@texttt https:// github. com/ ebiggers/ libdeflate[][][]@textrm ) is used by [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] Appendix B [52] [53] [54] [55] [56] Appendix C [57] [58] [59] [60] [61] [62] Overfull \hbox (101.2292pt too wide) in paragraph at lines 5180--5180 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/arm64/pcre2-10.44-da rwin.20-arm64.tar.xz[] Overfull \hbox (83.98314pt too wide) in paragraph at lines 5182--5182 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/arm64/xz-5.6.3-darwi n.20-arm64.tar.xz[] [63] l.5236: Undefined cross reference ` Tcl/Tk headers and libraries-snt'. l.5236: Undefined cross reference ` Tcl/Tk headers and libraries-snt'. l.5236: Undefined cross reference ` Tcl/Tk headers and libraries-pg'. [64] Overfull \hbox (39.30717pt too wide) in paragraph at lines 5310--5310 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.3-darwin.20 -arm64.tar.gz[] Overfull \hbox (148.53224pt too wide) in paragraph at lines 5347--5347 [] @texttt could not create compact unwind for _arcoef_: registers 23 and 24 not saved contiguously in frame[] Underfull \hbox (badness 10000) in paragraph at lines 5356--5357 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ [65] [66] [67] Underfull \hbox (badness 10000) in paragraph at lines 5621--5621 [][][][][]@smalltt https:// cran. r-project. org/ bin/ macosx/ RMacOSX-FA Q. html# [68] [69] [70] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5894--5894 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0/libgfortran.5. dylib \[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5899--5899 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0/libquadmath.0. dylib \[] [71] Overfull \hbox (50.80455pt too wide) in paragraph at lines 5940--5940 []@texttt FC="/opt//gfortran/bin/gfortran -arch x86_64 -mtune=native -mmacosx- version-min=11"[] [72] (Function and variable index) [73] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-admin.vrs) (Environment variable index) [74] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-admin.ens) (Concept index) [75] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-admin.cps) [76] ) (see the transcript file for additional information)pdfTeX warning (dest): name {\040Tcl/Tk\040headers\040and\040libraries} has been referenced but does not ex ist, replaced by a fixed one Output written on R-admin.pdf (81 pages, 520701 bytes). Transcript written on R-admin.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --pdf R-data.texi This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-data.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.5.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/builddir/build/BUILD/R-4.5.2/doc/manual/R-defs.texi) (/builddir/build/BUILD/R-4.5.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1 [1] Writing index file R-data.cp Cross reference values unknown; you must run TeX again. [2] [3] [4] Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] Underfull \hbox (badness 10000) in paragraph at lines 1215--1221 @texttt microsoft. com/ en-us/ sql/ odbc/ microsoft-open-database-connecti vity-odbc[][][]@textrm ) but is [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] (References) [27] (Function and variable index) [28] No file R-data.vrs. (Concept index) [29] No file R-data.cps. [30] ) (see the transcript file for additional information) Output written on R-data.pdf (33 pages, 265940 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-data.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.5.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/builddir/build/BUILD/R-4.5.2/doc/manual/R-defs.texi) (/builddir/build/BUILD/R-4.5.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-data.toc [-1]) [-2] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-data.toc) (/builddir/build/BUILD/R-4.5.2/doc/manual/R-data.toc) (Acknowledgements) (/builddir/build/BUILD/R-4.5.2/doc/manual/R-data.aux) Chapter 1 [1] Writing index file R-data.cp [2] [3] [4] Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] Underfull \hbox (badness 10000) in paragraph at lines 1215--1221 @texttt microsoft. com/ en-us/ sql/ odbc/ microsoft-open-database-connecti vity-odbc[][][]@textrm ) but is [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] (References) [27] (Function and variable index) [28] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-data.vrs [29]) (Concept index) [30] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-data.cps) [31] ) (see the transcript file for additional information) Output written on R-data.pdf (35 pages, 306149 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-data.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.5.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/builddir/build/BUILD/R-4.5.2/doc/manual/R-defs.texi) (/builddir/build/BUILD/R-4.5.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-data.toc [-1]) [-2] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-data.toc) (/builddir/build/BUILD/R-4.5.2/doc/manual/R-data.toc) (Acknowledgements) (/builddir/build/BUILD/R-4.5.2/doc/manual/R-data.aux) Chapter 1 [1] Writing index file R-data.cp [2] [3] [4] Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] Underfull \hbox (badness 10000) in paragraph at lines 1215--1221 @texttt microsoft. com/ en-us/ sql/ odbc/ microsoft-open-database-connecti vity-odbc[][][]@textrm ) but is [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] (References) [27] (Function and variable index) [28] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-data.vrs [29]) (Concept index) [30] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-data.cps) [31] ) (see the transcript file for additional information) Output written on R-data.pdf (35 pages, 306155 bytes). Transcript written on R-data.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --pdf R-exts.texi This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-exts.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.5.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/builddir/build/BUILD/R-4.5.2/doc/manual/R-defs.texi) (/builddir/build/BUILD/R-4.5.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1 [1] Writing index file R-exts.cp Cross reference values unknown; you must run TeX again. [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 513--516 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] Underfull \hbox (badness 10000) in paragraph at lines 1324--1325 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1325--1326 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1330--1332 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars.ucrt[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1330--1332 @texttt ~/.R/Makevars.win64[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1338--1339 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1339--1340 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1344--1346 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars.ucrt[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1344--1346 @texttt ~/.R/Makevars.win64[]@textrm , [15] [16] [17] [18] Overfull \hbox (73.7993pt too wide) in paragraph at lines 1611--1611 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (50.80455pt too wide) in paragraph at lines 1612--1612 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2683--2683 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2685--2685 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [31] [32] [33] [34] Underfull \hbox (badness 10000) in paragraph at lines 3027--3033 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][][] @smallrm or [35] Overfull \hbox (39.30717pt too wide) in paragraph at lines 3104--3104 [] @texttt CXX="$(CXX20) $(CXX20STD)" CXXFLAGS="$(CXX20FLAGS) $(CXX 20PICFLAGS)")[] [36] [37] [38] Overfull \hbox (22.06111pt too wide) in paragraph at lines 3341--3341 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin /cmake; fi[] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] Overfull \hbox (59.67485pt too wide) in paragraph at lines 4936--4936 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (37.99364pt too wide) in paragraph at lines 4955--4955 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX PICFLAGS`[] [57] [58] [59] [60] [61] [62] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5414--5414 []@texttt 1.1 1.2 1.3 1.4 5.0 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 2 3 24 25[] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5430--5430 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5432--5432 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 5433--5433 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 5448--5448 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [63] Underfull \hbox (badness 7558) in paragraph at lines 5506--5510 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b e looked for [64] [65] [66] [67] [68] [69] [70] [71] Overfull \hbox (32.24495pt too wide) in paragraph at lines 6247--6247 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [72] [73] Overfull \hbox (26.49626pt too wide) in paragraph at lines 6389--6389 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS:'kdenestmlcvb' :: kdene stmlcvb[] Overfull \hbox (89.73183pt too wide) in paragraph at lines 6416--6416 [] @texttt Rf_error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj) , (double) nelem);[] Writing index file R-exts.ap [74] [75] [76] [77] [78] [79] [80] [81] Underfull \hbox (badness 10000) in paragraph at lines 7168--7178 []@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https:// R-Forge. r-pro ject. org[]@textrm )[][]) and RForge Chapter 2 [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94] Underfull \hbox (badness 10000) in paragraph at lines 8214--8221 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [95] [96] Underfull \hbox (badness 10000) in paragraph at lines 8397--8403 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of Underfull \hbox (badness 10000) in paragraph at lines 8430--8435 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt TRUE[] @textit and [97] [98] [99] Chapter 3 [100] [101] [102] [103] [104] [105] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9184--9184 []@texttt 5497 1.9783 R findVarLocInFrame.part.0. lto_priv.0[] [106] Chapter 4 [107] [108] [109] [110] [111] Underfull \hbox (badness 10000) in paragraph at lines 9626--9635 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [112] [113] [114] Underfull \hbox (badness 10000) in paragraph at lines 9885--9898 @textrm See [][]@texttt https:// clang. llvm. org/ docs/ UsersManual. htm l# controlling-code-generation[][][]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 9902--9903 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ [115] Overfull \hbox (56.55324pt too wide) in paragraph at lines 10051--10051 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] [116] Underfull \hbox (badness 10000) in paragraph at lines 10090--10093 []@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by Underfull \hbox (badness 10000) in paragraph at lines 10090--10093 @texttt -fsanitize=undefined,address[] @textrm (where both are sup-ported, and we have seen Underfull \hbox (badness 7704) in paragraph at lines 10110--10114 @textrm (plus the more spe-cific ver-sions @texttt array-bounsds[]@textrm , @te xttt local-bounds[]@textrm , @texttt shift-base[] @textrm and [117] Overfull \hbox (91.04536pt too wide) in paragraph at lines 10205--10205 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero - fno-omit-frame-pointer[] Overfull \hbox (148.53224pt too wide) in paragraph at lines 10206--10206 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer o -fno-omit-frame-pointer -frtti[] Overfull \hbox (160.02962pt too wide) in paragraph at lines 10209--10209 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/ libclang_rt.ubsan_standalone_cxx.a[] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10217--10217 []@texttt SAN_LIBS = -L$(UBSAN_DIR) -Wl,-rpath,$(UBSAN_DIR) -lclang_rt.ubsan_s tandalone[] [118] Overfull \hbox (50.80455pt too wide) in paragraph at lines 10284--10284 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [119] [120] [121] [122] [123] Overfull \hbox (102.54274pt too wide) in paragraph at lines 10702--10702 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] Overfull \hbox (125.53749pt too wide) in paragraph at lines 10721--10721 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] Overfull \hbox (119.7888pt too wide) in paragraph at lines 10732--10732 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] [124] Overfull \hbox (22.06111pt too wide) in paragraph at lines 10762--10762 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [125] [126] Overfull \vbox (0.18312pt too high) has occurred while \output is active [127] [128] [129] [130] [131] [132] [133] [134] Overfull \hbox (30.03963pt too wide) in paragraph at lines 11628--11628 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [135] [136] Overfull \hbox (39.30717pt too wide) in paragraph at lines 11794--11794 [] @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n a_omit_xts");[] [137] [138] [139] [140] [141] Overfull \hbox (16.31242pt too wide) in paragraph at lines 12234--12234 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [142] [143] [144] [145] [146] [147] [148] [149] Writing index file R-exts.ae [150] [151] [152] [153] Underfull \hbox (badness 10000) in paragraph at lines 13436--13447 @texttt R_existsVarInFrame[]@textrm , @texttt R_removeVarFromFrame[]@textrm , @ texttt R_PackageEnvName[]@textrm , @texttt R_IsPackageEnv[]@textrm , [154] [155] [156] Overfull \hbox (27.8098pt too wide) in paragraph at lines 13707--13707 [] @texttt Rf_isNull(TAG(args)) ? "" : Rf_translateChar(PRINTNAME(T AG(args)));[] [157] [158] [159] [160] [161] Overfull \hbox (16.31242pt too wide) in paragraph at lines 14147--14147 [] @texttt par = PROTECT(Rf_findVar(Rf_installChar(STRING_ELT(theta, i) ), rho));[] [162] Overfull \hbox (16.31242pt too wide) in paragraph at lines 14215--14215 [] @texttt par = PROTECT(Rf_findVar(Rf_installChar(STRING_ELT(theta, i) ), rho));[] [163] [164] [165] [166] Overfull \hbox (39.30717pt too wide) in paragraph at lines 14582--14582 [] @texttt ptr = R_MakeExternalPtr(thisHandle, Rf_install("RODBC_channel"), R_NilValue);[] [167] [168] Overfull \hbox (50.80455pt too wide) in paragraph at lines 14719--14719 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [169] Chapter 6 [170] [171] [172] [173] Writing index file R-exts.for [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] Overfull \hbox (45.05586pt too wide) in paragraph at lines 16785--16785 [] @texttt SEXP (*hndlr)(SEXP cond, void *hdata) , void *hdata)[] [191] [192] [193] [194] [195] Underfull \hbox (badness 10000) in paragraph at lines 17294--17303 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ [196] [197] [198] [199] Chapter 7 [200] [201] Chapter 8 [202] [203] Writing index file R-exts.em [204] Overfull \hbox (22.06111pt too wide) in paragraph at lines 18011--18011 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was built with a s tatic libR[] [205] Overfull \hbox (33.55849pt too wide) in paragraph at lines 18069--18069 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [206] [207] [208] [209] [210] [211] Underfull \hbox (badness 10000) in paragraph at lines 18611--18618 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [212] [213] Underfull \hbox (badness 10000) in paragraph at lines 18747--18751 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [214] No file R-exts.vrs. (API index) [215] No file R-exts.aps. (Fortran API index) [216] No file R-exts.fors. (Experimental API index) [217] No file R-exts.aes. (Embedding API index) [218] No file R-exts.ems. (Concept index) [219] No file R-exts.cps. [220] ) (see the transcript file for additional information) Output written on R-exts.pdf (223 pages, 1026767 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-exts.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.5.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/builddir/build/BUILD/R-4.5.2/doc/manual/R-defs.texi) (/builddir/build/BUILD/R-4.5.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-exts.toc [-1] [-2] [-3] [-4]) [-5] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-exts.toc) (/builddir/build/BUILD/R-4.5.2/doc/manual/R-exts.toc) (Acknowledgements) (/builddir/build/BUILD/R-4.5.2/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 513--516 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] Underfull \hbox (badness 10000) in paragraph at lines 1324--1325 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1325--1326 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1330--1332 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars.ucrt[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1330--1332 @texttt ~/.R/Makevars.win64[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1338--1339 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1339--1340 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1344--1346 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars.ucrt[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1344--1346 @texttt ~/.R/Makevars.win64[]@textrm , [15] [16] [17] [18] Overfull \hbox (73.7993pt too wide) in paragraph at lines 1611--1611 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (50.80455pt too wide) in paragraph at lines 1612--1612 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2683--2683 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2685--2685 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [31] [32] [33] [34] Underfull \hbox (badness 10000) in paragraph at lines 3027--3033 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][][] @smallrm or [35] Overfull \hbox (39.30717pt too wide) in paragraph at lines 3104--3104 [] @texttt CXX="$(CXX20) $(CXX20STD)" CXXFLAGS="$(CXX20FLAGS) $(CXX 20PICFLAGS)")[] [36] [37] [38] Overfull \hbox (22.06111pt too wide) in paragraph at lines 3341--3341 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin /cmake; fi[] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] Overfull \hbox (59.67485pt too wide) in paragraph at lines 4936--4936 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (37.99364pt too wide) in paragraph at lines 4955--4955 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX PICFLAGS`[] [57] [58] [59] [60] [61] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5414--5414 []@texttt 1.1 1.2 1.3 1.4 5.0 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 2 3 24 25[] [62] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5430--5430 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5432--5432 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 5433--5433 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 5448--5448 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [63] Underfull \hbox (badness 7558) in paragraph at lines 5506--5510 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b e looked for [64] [65] [66] [67] [68] [69] [70] [71] Overfull \hbox (32.24495pt too wide) in paragraph at lines 6247--6247 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [72] [73] Overfull \hbox (26.49626pt too wide) in paragraph at lines 6389--6389 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS:'kdenestmlcvb' :: kdene stmlcvb[] Overfull \hbox (89.73183pt too wide) in paragraph at lines 6416--6416 [] @texttt Rf_error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj) , (double) nelem);[] Writing index file R-exts.ap [74] [75] [76] [77] [78] [79] [80] [81] Underfull \hbox (badness 10000) in paragraph at lines 7168--7178 []@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https:// R-Forge. r-pro ject. org[]@textrm )[][]) and RForge Chapter 2 [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94] Underfull \hbox (badness 10000) in paragraph at lines 8214--8221 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [95] [96] Underfull \hbox (badness 10000) in paragraph at lines 8397--8403 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of Underfull \hbox (badness 10000) in paragraph at lines 8430--8435 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt TRUE[] @textit and [97] [98] [99] Chapter 3 [100] [101] [102] [103] [104] [105] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9184--9184 []@texttt 5497 1.9783 R findVarLocInFrame.part.0. lto_priv.0[] [106] Chapter 4 [107] [108] [109] [110] [111] Underfull \hbox (badness 10000) in paragraph at lines 9626--9635 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [112] [113] [114] Underfull \hbox (badness 10000) in paragraph at lines 9885--9898 @textrm See [][]@texttt https:// clang. llvm. org/ docs/ UsersManual. htm l# controlling-code-generation[][][]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 9902--9903 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ [115] Overfull \hbox (56.55324pt too wide) in paragraph at lines 10051--10051 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] [116] Underfull \hbox (badness 10000) in paragraph at lines 10090--10093 []@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by Underfull \hbox (badness 10000) in paragraph at lines 10090--10093 @texttt -fsanitize=undefined,address[] @textrm (where both are sup-ported, and we have seen Underfull \hbox (badness 7704) in paragraph at lines 10110--10114 @textrm (plus the more spe-cific ver-sions @texttt array-bounsds[]@textrm , @te xttt local-bounds[]@textrm , @texttt shift-base[] @textrm and [117] Overfull \hbox (91.04536pt too wide) in paragraph at lines 10205--10205 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero - fno-omit-frame-pointer[] Overfull \hbox (148.53224pt too wide) in paragraph at lines 10206--10206 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer o -fno-omit-frame-pointer -frtti[] Overfull \hbox (160.02962pt too wide) in paragraph at lines 10209--10209 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/ libclang_rt.ubsan_standalone_cxx.a[] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10217--10217 []@texttt SAN_LIBS = -L$(UBSAN_DIR) -Wl,-rpath,$(UBSAN_DIR) -lclang_rt.ubsan_s tandalone[] [118] Overfull \hbox (50.80455pt too wide) in paragraph at lines 10284--10284 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [119] [120] [121] [122] [123] Overfull \hbox (102.54274pt too wide) in paragraph at lines 10702--10702 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] Overfull \hbox (125.53749pt too wide) in paragraph at lines 10721--10721 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] Overfull \hbox (119.7888pt too wide) in paragraph at lines 10732--10732 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] [124] Overfull \hbox (22.06111pt too wide) in paragraph at lines 10762--10762 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [125] [126] Overfull \vbox (0.18312pt too high) has occurred while \output is active [127] [128] [129] [130] [131] [132] [133] [134] Overfull \hbox (30.03963pt too wide) in paragraph at lines 11628--11628 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [135] [136] Overfull \hbox (39.30717pt too wide) in paragraph at lines 11794--11794 [] @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n a_omit_xts");[] [137] [138] [139] [140] [141] Overfull \hbox (16.31242pt too wide) in paragraph at lines 12234--12234 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [142] [143] [144] [145] [146] [147] [148] [149] Writing index file R-exts.ae [150] [151] [152] [153] Underfull \hbox (badness 10000) in paragraph at lines 13436--13447 @texttt R_existsVarInFrame[]@textrm , @texttt R_removeVarFromFrame[]@textrm , @ texttt R_PackageEnvName[]@textrm , @texttt R_IsPackageEnv[]@textrm , [154] [155] [156] Overfull \hbox (27.8098pt too wide) in paragraph at lines 13707--13707 [] @texttt Rf_isNull(TAG(args)) ? "" : Rf_translateChar(PRINTNAME(T AG(args)));[] [157] [158] [159] [160] [161] Overfull \hbox (16.31242pt too wide) in paragraph at lines 14147--14147 [] @texttt par = PROTECT(Rf_findVar(Rf_installChar(STRING_ELT(theta, i) ), rho));[] [162] Overfull \hbox (16.31242pt too wide) in paragraph at lines 14215--14215 [] @texttt par = PROTECT(Rf_findVar(Rf_installChar(STRING_ELT(theta, i) ), rho));[] [163] [164] [165] [166] Overfull \hbox (39.30717pt too wide) in paragraph at lines 14582--14582 [] @texttt ptr = R_MakeExternalPtr(thisHandle, Rf_install("RODBC_channel"), R_NilValue);[] [167] [168] Overfull \hbox (50.80455pt too wide) in paragraph at lines 14719--14719 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [169] Chapter 6 [170] [171] [172] [173] Writing index file R-exts.for [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] Overfull \hbox (45.05586pt too wide) in paragraph at lines 16785--16785 [] @texttt SEXP (*hndlr)(SEXP cond, void *hdata) , void *hdata)[] [191] [192] [193] [194] [195] Underfull \hbox (badness 10000) in paragraph at lines 17294--17303 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ [196] [197] [198] [199] [200] Chapter 7 [201] [202] Chapter 8 [203] [204] Writing index file R-exts.em [205] Overfull \hbox (22.06111pt too wide) in paragraph at lines 18011--18011 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was built with a s tatic libR[] [206] Overfull \hbox (33.55849pt too wide) in paragraph at lines 18069--18069 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [207] [208] [209] [210] [211] [212] Underfull \hbox (badness 10000) in paragraph at lines 18611--18618 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [213] [214] Underfull \hbox (badness 10000) in paragraph at lines 18747--18751 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [215] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-exts.vrs [216] [217] [218] [219] [220]) (API index) [221] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-exts.aps [222] [223] [224]) (Fortran API index) [225] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-exts.fors) (Experimental API index) [226] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-exts.aes) (Embedding API index) [227] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-exts.ems) (Concept index) [228] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-exts.cps [229]) [230] ) (see the transcript file for additional information) Output written on R-exts.pdf (237 pages, 1156992 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-exts.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.5.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/builddir/build/BUILD/R-4.5.2/doc/manual/R-defs.texi) (/builddir/build/BUILD/R-4.5.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-exts.toc [-1] [-2] [-3] [-4]) [-5] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-exts.toc) (/builddir/build/BUILD/R-4.5.2/doc/manual/R-exts.toc) (Acknowledgements) (/builddir/build/BUILD/R-4.5.2/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 513--516 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] Underfull \hbox (badness 10000) in paragraph at lines 1324--1325 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1325--1326 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1330--1332 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars.ucrt[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1330--1332 @texttt ~/.R/Makevars.win64[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1338--1339 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1339--1340 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1344--1346 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars.ucrt[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1344--1346 @texttt ~/.R/Makevars.win64[]@textrm , [15] [16] [17] [18] Overfull \hbox (73.7993pt too wide) in paragraph at lines 1611--1611 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (50.80455pt too wide) in paragraph at lines 1612--1612 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2683--2683 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2685--2685 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [31] [32] [33] [34] Underfull \hbox (badness 10000) in paragraph at lines 3027--3033 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][][] @smallrm or [35] Overfull \hbox (39.30717pt too wide) in paragraph at lines 3104--3104 [] @texttt CXX="$(CXX20) $(CXX20STD)" CXXFLAGS="$(CXX20FLAGS) $(CXX 20PICFLAGS)")[] [36] [37] [38] Overfull \hbox (22.06111pt too wide) in paragraph at lines 3341--3341 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin /cmake; fi[] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] Overfull \hbox (59.67485pt too wide) in paragraph at lines 4936--4936 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (37.99364pt too wide) in paragraph at lines 4955--4955 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX PICFLAGS`[] [57] [58] [59] [60] [61] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5414--5414 []@texttt 1.1 1.2 1.3 1.4 5.0 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 2 3 24 25[] [62] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5430--5430 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5432--5432 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 5433--5433 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 5448--5448 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [63] Underfull \hbox (badness 7558) in paragraph at lines 5506--5510 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b e looked for [64] [65] [66] [67] [68] [69] [70] [71] Overfull \hbox (32.24495pt too wide) in paragraph at lines 6247--6247 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [72] [73] Overfull \hbox (26.49626pt too wide) in paragraph at lines 6389--6389 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS:'kdenestmlcvb' :: kdene stmlcvb[] Overfull \hbox (89.73183pt too wide) in paragraph at lines 6416--6416 [] @texttt Rf_error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj) , (double) nelem);[] Writing index file R-exts.ap [74] [75] [76] [77] [78] [79] [80] [81] Underfull \hbox (badness 10000) in paragraph at lines 7168--7178 []@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https:// R-Forge. r-pro ject. org[]@textrm )[][]) and RForge Chapter 2 [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94] Underfull \hbox (badness 10000) in paragraph at lines 8214--8221 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [95] [96] Underfull \hbox (badness 10000) in paragraph at lines 8397--8403 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of Underfull \hbox (badness 10000) in paragraph at lines 8430--8435 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt TRUE[] @textit and [97] [98] [99] Chapter 3 [100] [101] [102] [103] [104] [105] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9184--9184 []@texttt 5497 1.9783 R findVarLocInFrame.part.0. lto_priv.0[] [106] Chapter 4 [107] [108] [109] [110] [111] Underfull \hbox (badness 10000) in paragraph at lines 9626--9635 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [112] [113] [114] Underfull \hbox (badness 10000) in paragraph at lines 9885--9898 @textrm See [][]@texttt https:// clang. llvm. org/ docs/ UsersManual. htm l# controlling-code-generation[][][]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 9902--9903 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ [115] Overfull \hbox (56.55324pt too wide) in paragraph at lines 10051--10051 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] [116] Underfull \hbox (badness 10000) in paragraph at lines 10090--10093 []@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by Underfull \hbox (badness 10000) in paragraph at lines 10090--10093 @texttt -fsanitize=undefined,address[] @textrm (where both are sup-ported, and we have seen Underfull \hbox (badness 7704) in paragraph at lines 10110--10114 @textrm (plus the more spe-cific ver-sions @texttt array-bounsds[]@textrm , @te xttt local-bounds[]@textrm , @texttt shift-base[] @textrm and [117] Overfull \hbox (91.04536pt too wide) in paragraph at lines 10205--10205 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero - fno-omit-frame-pointer[] Overfull \hbox (148.53224pt too wide) in paragraph at lines 10206--10206 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer o -fno-omit-frame-pointer -frtti[] Overfull \hbox (160.02962pt too wide) in paragraph at lines 10209--10209 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/ libclang_rt.ubsan_standalone_cxx.a[] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10217--10217 []@texttt SAN_LIBS = -L$(UBSAN_DIR) -Wl,-rpath,$(UBSAN_DIR) -lclang_rt.ubsan_s tandalone[] [118] Overfull \hbox (50.80455pt too wide) in paragraph at lines 10284--10284 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [119] [120] [121] [122] [123] Overfull \hbox (102.54274pt too wide) in paragraph at lines 10702--10702 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] Overfull \hbox (125.53749pt too wide) in paragraph at lines 10721--10721 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] Overfull \hbox (119.7888pt too wide) in paragraph at lines 10732--10732 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] [124] Overfull \hbox (22.06111pt too wide) in paragraph at lines 10762--10762 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [125] [126] Overfull \vbox (0.18312pt too high) has occurred while \output is active [127] [128] [129] [130] [131] [132] [133] [134] Overfull \hbox (30.03963pt too wide) in paragraph at lines 11628--11628 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [135] [136] Overfull \hbox (39.30717pt too wide) in paragraph at lines 11794--11794 [] @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n a_omit_xts");[] [137] [138] [139] [140] [141] Overfull \hbox (16.31242pt too wide) in paragraph at lines 12234--12234 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [142] [143] [144] [145] [146] [147] [148] [149] Writing index file R-exts.ae [150] [151] [152] [153] Underfull \hbox (badness 10000) in paragraph at lines 13436--13447 @texttt R_existsVarInFrame[]@textrm , @texttt R_removeVarFromFrame[]@textrm , @ texttt R_PackageEnvName[]@textrm , @texttt R_IsPackageEnv[]@textrm , [154] [155] [156] Overfull \hbox (27.8098pt too wide) in paragraph at lines 13707--13707 [] @texttt Rf_isNull(TAG(args)) ? "" : Rf_translateChar(PRINTNAME(T AG(args)));[] [157] [158] [159] [160] [161] Overfull \hbox (16.31242pt too wide) in paragraph at lines 14147--14147 [] @texttt par = PROTECT(Rf_findVar(Rf_installChar(STRING_ELT(theta, i) ), rho));[] [162] Overfull \hbox (16.31242pt too wide) in paragraph at lines 14215--14215 [] @texttt par = PROTECT(Rf_findVar(Rf_installChar(STRING_ELT(theta, i) ), rho));[] [163] [164] [165] [166] Overfull \hbox (39.30717pt too wide) in paragraph at lines 14582--14582 [] @texttt ptr = R_MakeExternalPtr(thisHandle, Rf_install("RODBC_channel"), R_NilValue);[] [167] [168] Overfull \hbox (50.80455pt too wide) in paragraph at lines 14719--14719 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [169] Chapter 6 [170] [171] [172] [173] Writing index file R-exts.for [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] Overfull \hbox (45.05586pt too wide) in paragraph at lines 16785--16785 [] @texttt SEXP (*hndlr)(SEXP cond, void *hdata) , void *hdata)[] [191] [192] [193] [194] [195] Underfull \hbox (badness 10000) in paragraph at lines 17294--17303 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ [196] [197] [198] [199] [200] Chapter 7 [201] [202] Chapter 8 [203] [204] Writing index file R-exts.em [205] Overfull \hbox (22.06111pt too wide) in paragraph at lines 18011--18011 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was built with a s tatic libR[] [206] Overfull \hbox (33.55849pt too wide) in paragraph at lines 18069--18069 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [207] [208] [209] [210] [211] [212] Underfull \hbox (badness 10000) in paragraph at lines 18611--18618 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [213] [214] Underfull \hbox (badness 10000) in paragraph at lines 18747--18751 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [215] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-exts.vrs [216] [217] [218] [219] [220]) (API index) [221] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-exts.aps [222] [223] [224]) (Fortran API index) [225] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-exts.fors) (Experimental API index) [226] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-exts.aes) (Embedding API index) [227] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-exts.ems) (Concept index) [228] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-exts.cps [229]) [230] ) (see the transcript file for additional information) Output written on R-exts.pdf (237 pages, 1156469 bytes). Transcript written on R-exts.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --pdf R-intro.texi This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-intro.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.5.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/builddir/build/BUILD/R-4.5.2/doc/manual/R-defs.texi) (/builddir/build/BUILD/R-4.5.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface) Cross reference values unknown; you must run TeX again. Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] Chapter 9 [38] [39] Chapter 10 [40] [41] [42] [43] [44] [45] [46] [47] [48] Chapter 11 [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] Chapter 12 [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] Chapter 13 [75] [76] Chapter 14 [77] [78] Underfull \hbox (badness 10000) in paragraph at lines 6492--6497 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6492--6497 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [79] Appendix A [80] [81] [82] Appendix B [83] [84] [85] [86] [87] [88] [89] Appendix C [90] [91] (References) [92] (Function and variable index) [93] No file R-intro.vrs. (Concept index) [94] No file R-intro.cps. [95] ) (see the transcript file for additional information) Output written on R-intro.pdf (98 pages, 569629 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-intro.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.5.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/builddir/build/BUILD/R-4.5.2/doc/manual/R-defs.texi) (/builddir/build/BUILD/R-4.5.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-intro.toc) (/builddir/build/BUILD/R-4.5.2/doc/manual/R-intro.toc) (Preface) (/builddir/build/BUILD/R-4.5.2/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] Chapter 9 [38] [39] Chapter 10 [40] [41] [42] [43] [44] [45] [46] [47] [48] Chapter 11 [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] Chapter 12 [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] Chapter 13 [75] [76] Chapter 14 [77] [78] Underfull \hbox (badness 10000) in paragraph at lines 6492--6497 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6492--6497 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [79] Appendix A [80] [81] [82] Appendix B [83] [84] [85] [86] [87] [88] [89] Appendix C [90] [91] (References) [92] (Function and variable index) [93] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-intro.vrs [94] [95]) (Concept index) [96] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-intro.cps [97]) [98] ) (see the transcript file for additional information) Output written on R-intro.pdf (104 pages, 626832 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-intro.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.5.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/builddir/build/BUILD/R-4.5.2/doc/manual/R-defs.texi) (/builddir/build/BUILD/R-4.5.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-intro.toc) (/builddir/build/BUILD/R-4.5.2/doc/manual/R-intro.toc) (Preface) (/builddir/build/BUILD/R-4.5.2/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] Chapter 9 [38] [39] Chapter 10 [40] [41] [42] [43] [44] [45] [46] [47] [48] Chapter 11 [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] Chapter 12 [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] Chapter 13 [75] [76] Chapter 14 [77] [78] Underfull \hbox (badness 10000) in paragraph at lines 6492--6497 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6492--6497 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [79] Appendix A [80] [81] [82] Appendix B [83] [84] [85] [86] [87] [88] [89] Appendix C [90] [91] (References) [92] (Function and variable index) [93] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-intro.vrs [94] [95]) (Concept index) [96] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-intro.cps [97]) [98] ) (see the transcript file for additional information) Output written on R-intro.pdf (104 pages, 626833 bytes). Transcript written on R-intro.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --pdf R-ints.texi This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-ints.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.5.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/builddir/build/BUILD/R-4.5.2/doc/manual/R-defs.texi) (/builddir/build/BUILD/R-4.5.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1444--1444 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1445--1445 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1446--1446 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1447--1447 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] Underfull \hbox (badness 10000) in paragraph at lines 3698--3707 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3698--3707 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3698--3707 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [45] Chapter 8 [46] [47] Underfull \hbox (badness 10000) in paragraph at lines 3919--3924 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] Chapter 9 [60] [61] Chapter 10 [62] Chapter 11 [63] Chapter 12 [64] [65] (Function and variable index) [66] No file R-ints.vrs. (Concept index) [67] No file R-ints.cps. [68] ) (see the transcript file for additional information) Output written on R-ints.pdf (71 pages, 418589 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-ints.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.5.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/builddir/build/BUILD/R-4.5.2/doc/manual/R-defs.texi) (/builddir/build/BUILD/R-4.5.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-ints.toc [-1]) [-2] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-ints.toc) (/builddir/build/BUILD/R-4.5.2/doc/manual/R-ints.toc) Chapter 1 (/builddir/build/BUILD/R-4.5.2/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1444--1444 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1445--1445 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1446--1446 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1447--1447 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] Underfull \hbox (badness 10000) in paragraph at lines 3698--3707 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3698--3707 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3698--3707 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [45] Chapter 8 [46] [47] Underfull \hbox (badness 10000) in paragraph at lines 3919--3924 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] Chapter 9 [60] [61] Chapter 10 [62] Chapter 11 [63] Chapter 12 [64] [65] (Function and variable index) [66] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-ints.vrs [67]) [68] (Concept index) [69] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-ints.cps) [70] ) (see the transcript file for additional information) Output written on R-ints.pdf (74 pages, 471934 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-ints.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.5.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/builddir/build/BUILD/R-4.5.2/doc/manual/R-defs.texi) (/builddir/build/BUILD/R-4.5.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-ints.toc [-1]) [-2] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-ints.toc) (/builddir/build/BUILD/R-4.5.2/doc/manual/R-ints.toc) Chapter 1 (/builddir/build/BUILD/R-4.5.2/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1444--1444 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1445--1445 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1446--1446 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1447--1447 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] Underfull \hbox (badness 10000) in paragraph at lines 3698--3707 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3698--3707 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3698--3707 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [45] Chapter 8 [46] [47] Underfull \hbox (badness 10000) in paragraph at lines 3919--3924 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] Chapter 9 [60] [61] Chapter 10 [62] Chapter 11 [63] Chapter 12 [64] [65] (Function and variable index) [66] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-ints.vrs [67]) [68] (Concept index) [69] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-ints.cps) [70] ) (see the transcript file for additional information) Output written on R-ints.pdf (74 pages, 471935 bytes). Transcript written on R-ints.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --pdf R-lang.texi This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-lang.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.5.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/builddir/build/BUILD/R-4.5.2/doc/manual/R-defs.texi) (/builddir/build/BUILD/R-4.5.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-lang.cp Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again. Overfull \hbox (8.41086pt too wide) in paragraph at lines 255--256 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4143--4145 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (References) [51] (Function and variable index) [52] No file R-lang.vrs. (Concept index) [53] No file R-lang.cps. [54] ) (see the transcript file for additional information) Output written on R-lang.pdf (57 pages, 345791 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-lang.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.5.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/builddir/build/BUILD/R-4.5.2/doc/manual/R-defs.texi) (/builddir/build/BUILD/R-4.5.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-lang.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-lang.toc) (/builddir/build/BUILD/R-4.5.2/doc/manual/R-lang.toc) Chapter 1 (/builddir/build/BUILD/R-4.5.2/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 255--256 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4143--4145 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (References) [51] (Function and variable index) [52] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-lang.vrs [53]) (Concept index) [54] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-lang.cps) [55] ) (see the transcript file for additional information) Output written on R-lang.pdf (60 pages, 392297 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (./R-lang.texi (/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-4.5.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/builddir/build/BUILD/R-4.5.2/doc/manual/R-defs.texi) (/builddir/build/BUILD/R-4.5.2/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-lang.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-lang.toc) (/builddir/build/BUILD/R-4.5.2/doc/manual/R-lang.toc) Chapter 1 (/builddir/build/BUILD/R-4.5.2/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 255--256 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4143--4145 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (References) [51] (Function and variable index) [52] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-lang.vrs [53]) (Concept index) [54] (/builddir/build/BUILD/R-4.5.2/doc/manual/R-lang.cps) [55] ) (see the transcript file for additional information) Output written on R-lang.pdf (60 pages, 392289 bytes). Transcript written on R-lang.log. make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/doc' + make compact-pdf make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/doc/manual' compacting PDF manuals in doc/manual make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/doc/manual' + make info make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/doc' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/doc/manual' /usr/bin/texi2any --enable-encoding -I. R-FAQ.texi /usr/bin/texi2any --enable-encoding -I. R-admin.texi /usr/bin/texi2any --enable-encoding -I. R-data.texi /usr/bin/texi2any --enable-encoding -I. R-exts.texi /usr/bin/texi2any --enable-encoding -I. R-intro.texi /usr/bin/texi2any --enable-encoding -I. R-ints.texi /usr/bin/texi2any --enable-encoding -I. R-lang.texi make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/doc' + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-intro.info.utf8 doc/manual/R-intro.info + mv doc/manual/R-intro.info.utf8 doc/manual/R-intro.info + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-FAQ.info.utf8 doc/manual/R-FAQ.info + mv doc/manual/R-FAQ.info.utf8 doc/manual/R-FAQ.info + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/FAQ.utf8 doc/FAQ + mv doc/FAQ.utf8 doc/FAQ + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o 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Entering directory '/builddir/build/BUILD/R-4.5.2/m4' make[1]: Nothing to be done for 'install'. make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/m4' make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/tools' make[1]: Nothing to be done for 'install'. make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/tools' make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/doc' installing doc ... mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/doc/R mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/man/man1 make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/doc/html' installing doc/html ... mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/doc/R/html make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/doc/html' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/doc/manual' installing doc/manual ... mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/doc/R/manual mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/doc/R/manual/images make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/doc' make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/etc' mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/etc installing etc ... make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/etc' make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/share' installing share ... mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/R mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/R/R mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/R/dictionaries mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/R/encodings mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/R/java mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/R/licenses mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/R/make mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/R/Rd mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/R/Rd/macros mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/R/sh mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/R/texmf mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/R/texmf/bibtex/bib mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/R/texmf/bibtex/bst mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/R/texmf/tex/latex make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/share' make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/src' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/scripts' mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/bin mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/scripts' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/include' mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/include/R make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/include/R_ext' mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/include/R/R_ext make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/include/R_ext' make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/include' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/extra' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/extra/blas' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/extra/blas' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/extra/tre' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/extra/tre' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/extra/tzone' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/extra/tzone' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/extra/xdr' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/extra/xdr' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/extra/intl' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/extra/intl' make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/extra' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/appl' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/appl' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/nmath' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/nmath' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -DR_HOME='"/usr/lib64/R"' \ -o Rscript ./Rscript.c mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/pkgconfig make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/unix' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/main' mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/exec make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/main' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/main' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/main' mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/lib make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/main' make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/main' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/modules' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/modules/internet' mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/modules make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/modules/internet' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/modules/lapack' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/modules/lapack' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/modules/X11' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/modules/X11' make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/modules' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/library' mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library installing packages ... building HTML index ... make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/library' make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src' make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/tests' make[1]: Nothing to be done for 'install'. make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/tests' make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/doc/manual' installing R manuals in PDF format ... make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/doc/manual' make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/doc/manual' mkdir -p -- /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/info /usr/bin/install -c -m 644 "./dir" "/builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/info" installing R info pages ... updating '/usr/share/info/dir' ... make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/doc/manual' + rm -f /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/info/dir + mkdir -p /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/doc/R + install -p CAPABILITIES /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/doc/R + cd src/nmath/standalone + make install DESTDIR=/builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64 make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/src/include' make[1]: 'Rmath.h' is up to date. make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/src/include' + mkdir -p /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/etc/ld.so.conf.d + echo /usr/lib64/R/lib + mkdir -p /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/R/library + touch -r README /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/doc/R/CAPABILITIES + touch -r README doc/manual/R-FAQ.pdf doc/manual/R-admin.pdf doc/manual/R-data.pdf doc/manual/R-exts.pdf doc/manual/R-intro.pdf doc/manual/R-ints.pdf doc/manual/R-lang.pdf doc/manual/fullrefman.pdf + touch -r README /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/bin/R + sed -i 's|\..\/\..|/usr/lib64/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/doc/R/html/packages.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/KernSmooth/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/KernSmooth/html/bkde.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/KernSmooth/html/bkde2D.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/KernSmooth/html/bkfe.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/KernSmooth/html/dpih.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/KernSmooth/html/dpik.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/KernSmooth/html/dpill.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/KernSmooth/html/locpoly.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/Aids2.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/Animals.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/Boston.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/Cars93.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/Cushings.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/DDT.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/GAGurine.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/Insurance.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/MASS-internal.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/Melanoma.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/Null.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/OME.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/Pima.tr.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/Rabbit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/Rubber.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/SP500.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/Sitka.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/Sitka89.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/Skye.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/Traffic.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/UScereal.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/UScrime.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/VA.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/abbey.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/accdeaths.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/addterm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/anorexia.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/anova.negbin.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/area.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/bacteria.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/bandwidth.nrd.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/bcv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/beav1.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/beav2.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/biopsy.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/birthwt.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/boxcox.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/cabbages.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/caith.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/cats.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/cement.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/chem.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/con2tr.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/confint.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/contr.sdif.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/coop.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/corresp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/cov.rob.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/cov.trob.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/cpus.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/crabs.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/deaths.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/denumerate.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/dose.p.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/drivers.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/dropterm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/eagles.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/epil.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/eqscplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/farms.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/fgl.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/fitdistr.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/forbes.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/fractions.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/galaxies.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/gamma.dispersion.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/gamma.shape.glm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/gehan.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/genotype.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/geyser.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/gilgais.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/ginv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/glm.convert.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/glm.nb.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/glmmPQL.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/hills.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/hist.scott.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/housing.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/huber.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/hubers.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/immer.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/isoMDS.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/kde2d.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/lda.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/ldahist.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/leuk.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/lm.gls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/lm.ridge.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/loglm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/loglm1.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/logtrans.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/lqs.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/mammals.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/mca.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/mcycle.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/menarche.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/michelson.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/minn38.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/motors.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/muscle.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/mvrnorm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/negative.binomial.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/newcomb.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/nlschools.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/npk.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/npr1.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/oats.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/painters.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/pairs.lda.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/parcoord.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/petrol.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/phones.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/plot.lda.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/plot.mca.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/polr.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/predict.glmmPQL.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/predict.lda.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/predict.lqs.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/predict.mca.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/predict.qda.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/profile.glm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/qda.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/quine.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/rational.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/renumerate.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/rlm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/rms.curv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/rnegbin.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/road.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/rotifer.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/sammon.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/ships.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/shoes.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/shrimp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/shuttle.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/snails.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/stdres.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/steam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/stepAIC.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/stormer.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/studres.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/summary.loglm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/summary.negbin.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/summary.rlm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/survey.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/synth.tr.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/theta.md.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/topo.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/truehist.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/ucv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/waders.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/whiteside.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/width.SJ.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/write.matrix.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/html/wtloss.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/BunchKaufman-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/BunchKaufman-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/CAex.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/CHMfactor-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/Cholesky-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/Cholesky-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/CsparseMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/Diagonal.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/Hilbert.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/KNex.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/KhatriRao.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/Matrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/Matrix-defunct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/Matrix-deprecated.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/Matrix-notyet.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/Matrix.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/MatrixClass.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/MatrixFactorization-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/RsparseMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/Schur-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/Schur-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/TsparseMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/USCounties.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/abIndex-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/abIseq.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/all.equal-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/asUniqueT.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/band-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/bandSparse.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/bdiag.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/boolmatmult-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/cbind2-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/chol-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/chol2inv-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/coerce-methods-SparseM.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/coerce-methods-graph.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/colSums-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/condest.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/dMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/ddenseMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/ddiMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/denseLU-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/denseMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/dgCMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/dgRMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/dgTMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/dgeMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/diagU2N.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/diagonalMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/dimScale.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/dmperm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/dpoMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/drop0.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/dsCMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/dsRMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/dsparseMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/dsyMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/dtCMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/dtRMatrix-class-sparse.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/dtpMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/dtrMatrix-class-dense.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/expand-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/expm-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/externalFormats.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/facmul-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/fastMisc.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/forceSymmetric-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/formatSparseM.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/generalMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/image-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/indMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/index-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/invertPerm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/is.na-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/is.null.DN.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/isSymmetric-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/isTriangular-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/kronecker-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/ldenseMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/ldiMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/lgeMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/lsparseMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/lsyMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/ltrMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/lu-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/mat2triplet.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/matmult-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/nMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/ndenseMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/nearPD.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/ngeMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/nnzero-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/norm-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/nsparseMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/nsyMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/ntrMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/pMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/pack-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/packedMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/printSpMatrix.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/qr-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/rankMatrix.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/rcond-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/rep2abI.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/rleDiff-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/rsparsematrix.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/solve-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/spMatrix.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/sparse.model.matrix.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/sparseLU-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/sparseMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/sparseMatrix.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/sparseQR-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/sparseVector-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/sparseVector.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/subassign-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/subscript-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/symmetricMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/symmpart-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/triangularMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/unpackedMatrix-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/updown-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/html/wrld_1deg.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Arithmetic.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/AsIs.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Bessel.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/CallExternal.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Colon.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Comparison.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Constants.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Control.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Cstack_info.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/DateTimeClasses.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Dates.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Defunct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Deprecated.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Encoding.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/EnvVar.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Extract.data.frame.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Extract.factor.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Extract.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Extremes.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Foreign-internal.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Foreign.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Hyperbolic.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/ISOdatetime.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Internal.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/InternalMethods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/La_library.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/La_version.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Last.value.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Log.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Logic.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/LongVectors.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/MathFun.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Memory-limits.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Memory.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/NA.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/NULL.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/NumericConstants.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Ops.Date.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Paren.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Platform.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Primitive.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Quotes.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Random-user.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Random.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/RdUtils.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Recall.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Reserved.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Rhome.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Round.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/S3method.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Signals.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Special.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/StackOverflows.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Startup.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Syntax.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Sys.getenv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Sys.getpid.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Sys.glob.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Sys.info.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Sys.localeconv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Sys.readlink.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Sys.setFileTime.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Sys.setenv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Sys.sleep.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Sys.time.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Sys.which.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Tailcall.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Trig.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/UTF8filepaths.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/UseMethod.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Vectorize.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/Version.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/abbreviate.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/agrep.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/all.equal.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/all.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/allnames.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/any.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/aperm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/append.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/apply.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/args.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/array.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/array2DF.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/as.Date.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/as.POSIXlt.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/as.data.frame.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/as.environment.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/as.function.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/asplit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/assign.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/assignOps.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/attach.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/attr.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/attributes.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/autoload.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/backsolve.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/balancePOSIXlt.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/base-defunct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/base-deprecated.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/base-internal.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/base-package.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/basename.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/bincode.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/bindenv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/bitwise.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/body.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/bquote.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/browser.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/browserText.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/builtins.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/by.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/c.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/call.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/callCC.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/capabilities.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/cat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/cbind.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/char.expand.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/character.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/charmatch.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/chartr.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/chkDots.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/chol.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/chol2inv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/chooseOpsMethod.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/col.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/colSums.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/colnames.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/commandArgs.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/comment.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/complex.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/conditions.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/conflicts.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/connections.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/contributors.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/copyright.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/crossprod.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/cumsum.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/curlGetHeaders.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/cut.POSIXt.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/cut.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/data.class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/data.frame.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/data.matrix.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/dataframeHelpers.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/date.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/dcf.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/debug.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/declare.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/delayedAssign.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/deparse.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/deparseOpts.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/det.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/detach.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/dev.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/diag.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/diff.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/difftime.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/dim.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/dimnames.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/do.call.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/dontCheck.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/dots.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/double.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/dput.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/drop.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/droplevels.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/dump.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/duplicated.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/dynload.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/eapply.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/eigen.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/encodeString.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/environment.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/eval.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/exists.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/expand.grid.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/expression.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/extSoftVersion.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/factor.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/file.access.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/file.choose.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/file.info.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/file.path.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/file.show.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/files.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/files2.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/find.package.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/findInterval.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/force.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/forceAndCall.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/formals.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/format.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/format.info.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/format.pval.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/formatDL.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/formatc.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/function.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/funprog.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/gc.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/gc.time.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/gctorture.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/get.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/getCallingDLL.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/getDLLRegisteredRoutines.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/getLoadedDLLs.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/getNativeSymbolInfo.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/gettext.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/getwd.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/gl.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/grep.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/grepRaw.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/groupGeneric.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/grouping.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/gzcon.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/hexmode.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/iconv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/icuSetCollate.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/identical.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/identity.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/ifelse.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/integer.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/interaction.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/interactive.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/invisible.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/is.finite.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/is.function.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/is.language.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/is.object.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/is.recursive.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/is.single.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/is.unsorted.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/isS4.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/isSymmetric.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/jitter.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/kappa.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/kronecker.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/l10n_info.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/labels.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/lapply.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/lazyload.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/length.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/lengths.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/levels.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/libPaths.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/libcurlVersion.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/library.dynam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/library.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/license.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/list.files.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/list.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/list2DF.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/list2env.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/load.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/locales.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/logical.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/lower.tri.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/ls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/make.names.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/make.unique.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/mapply.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/marginSums.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/mat.or.vec.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/match.arg.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/match.call.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/match.fun.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/match.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/matmult.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/matrix.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/maxCol.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/mean.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/memCompress.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/memlimits.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/memory.profile.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/merge.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/message.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/missing.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/mode.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/mtfrm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/name.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/names.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/nargs.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/nchar.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/nlevels.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/noquote.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/norm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/normalizePath.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/notyet.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/nrow.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/ns-dblcolon.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/ns-hooks.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/ns-internal.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/ns-load.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/ns-reflect.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/ns-topenv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/numeric.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/numeric_version.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/octmode.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/on.exit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/options.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/order.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/outer.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/parse.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/paste.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/path.expand.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/pcre_config.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/pipeOp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/plot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/pmatch.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/polyroot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/pos.to.env.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/pretty.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/print.dataframe.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/print.default.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/print.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/prmatrix.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/proc.time.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/prod.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/proportions.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/pushBack.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/qr.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/qraux.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/quit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/range.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/rank.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/rapply.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/raw.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/rawConnection.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/rawConversion.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/readBin.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/readChar.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/readLines.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/readRDS.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/readRenviron.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/readline.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/reg.finalizer.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/regex.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/regmatches.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/rep.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/replace.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/rev.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/rle.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/rm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/round.POSIXt.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/row.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/row.names.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/rowsum.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/sQuote.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/sample.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/save.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/scale.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/scan.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/search.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/seek.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/seq.Date.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/seq.POSIXt.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/seq.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/sequence.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/serialize.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/setTimeLimit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/sets.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/shQuote.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/showConnections.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/sign.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/sink.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/slice.index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/slotOp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/socketSelect.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/solve.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/sort.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/sort_by.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/source.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/split.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/sprintf.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/srcfile.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/standardGeneric.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/startsWith.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/stop.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/stopifnot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/strptime.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/strrep.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/strsplit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/strtoi.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/strtrim.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/structure.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/strwrap.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/subset.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/substitute.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/substr.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/sum.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/summary.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/svd.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/sweep.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/switch.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/sys.parent.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/sys.source.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/system.file.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/system.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/system.time.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/system2.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/t.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/table.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/tabulate.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/tapply.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/taskCallback.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/taskCallbackManager.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/taskCallbackNames.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/tempfile.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/textconnections.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/tilde.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/timezones.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/toString.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/trace.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/traceback.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/tracemem.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/transform.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/trimws.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/try.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/typeof.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/unique.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/units.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/unlink.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/unlist.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/unname.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/use.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/userhooks.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/utf8Conversion.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/validUTF8.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/vector.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/warning.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/warnings.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/weekday.POSIXt.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/which.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/which.min.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/with.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/withVisible.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/write.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/writeLines.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/xtfrm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/zMachine.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/zScript.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/zapsmall.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/zpackages.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/base/html/zutils.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/EEF.profile.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/Imp.Estimates.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/abc.ci.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/acme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/aids.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/aircondit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/amis.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/aml.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/beaver.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/bigcity.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/boot-practicals.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/boot.array.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/boot.ci.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/boot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/brambles.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/breslow.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/calcium.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/cane.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/capability.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/catsM.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/cav.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/cd4.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/cd4.nested.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/censboot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/channing.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/claridge.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/cloth.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/co.transfer.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/coal.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/control.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/corr.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/cum3.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/cv.glm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/darwin.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/dogs.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/downs.bc.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/ducks.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/empinf.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/envelope.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/exp.tilt.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/fir.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/freq.array.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/frets.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/glm.diag.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/glm.diag.plots.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/gravity.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/hirose.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/imp.weights.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/inv.logit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/islay.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/jack.after.boot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/k3.linear.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/linear.approx.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/lines.saddle.distn.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/logit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/manaus.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/melanoma.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/motor.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/neuro.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/nitrofen.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/nodal.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/norm.ci.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/nuclear.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/paulsen.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/plot.boot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/poisons.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/polar.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/print.boot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/print.bootci.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/print.saddle.distn.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/print.simplex.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/remission.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/saddle.distn.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/saddle.distn.object.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/saddle.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/salinity.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/simplex.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/simplex.object.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/smooth.f.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/sunspot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/survival.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/tau.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/tilt.boot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/tsboot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/tuna.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/urine.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/var.linear.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/boot/html/wool.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/class/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/class/html/SOM.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/class/html/batchSOM.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/class/html/condense.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/class/html/knn.cv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/class/html/knn.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/class/html/knn1.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/class/html/lvq1.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/class/html/lvq2.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/class/html/lvq3.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/class/html/lvqinit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/class/html/lvqtest.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/class/html/multiedit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/class/html/olvq1.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/class/html/reduce.nn.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/class/html/somgrid.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/agnes.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/agnes.object.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/agriculture.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/animals.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/bannerplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/chorSub.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/clara.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/clara.object.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/clusGap.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/clusplot.default.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/clusplot.partition.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/cluster-internal.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/coef.hclust.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/daisy.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/diana.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/dissimilarity.object.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/ellipsoidhull.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/fanny.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/fanny.object.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/flower.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/lower.to.upper.tri.inds.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/medoids.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/mona.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/mona.object.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/pam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/pam.object.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/partition.object.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/plantTraits.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/plot.agnes.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/plot.diana.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/plot.mona.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/plot.partition.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/pltree.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/pluton.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/predict.ellipsoid.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/print.agnes.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/print.clara.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/print.diana.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/print.dissimilarity.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/print.fanny.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/print.mona.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/print.pam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/ruspini.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/silhouette.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/sizeDiss.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/summary.agnes.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/summary.clara.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/summary.diana.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/summary.mona.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/summary.pam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/twins.object.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/volume.ellipsoid.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/votes.repub.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/html/xclara.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/codetools/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/codetools/html/checkUsage.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/codetools/html/codetools.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/codetools/html/findGlobals.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/codetools/html/showTree.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/compiler/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/compiler/html/compile.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/AirPassengers.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/BJsales.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/BOD.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/ChickWeight.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/DNase.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/EuStockMarkets.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/Formaldehyde.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/HairEyeColor.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/Harman23.cor.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/Harman74.cor.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/Indometh.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/InsectSprays.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/JohnsonJohnson.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/LakeHuron.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/LifeCycleSavings.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/Loblolly.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/Nile.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/Orange.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/OrchardSprays.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/PlantGrowth.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/Puromycin.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/Theoph.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/Titanic.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/ToothGrowth.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/UCBAdmissions.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/UKDriverDeaths.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/UKLungDeaths.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/UKgas.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/USAccDeaths.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/USArrests.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/USJudgeRatings.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/USPersonalExpenditure.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/VADeaths.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/WWWusage.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/WorldPhones.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/ability.cov.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/airmiles.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/airquality.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/anscombe.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/attenu.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/attitude.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/austres.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/beavers.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/cars.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/chickwts.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/co2.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/crimtab.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/datasets-package.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/discoveries.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/esoph.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/euro.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/eurodist.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/faithful.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/freeny.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/gait.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/infert.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/iris.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/islands.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/lh.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/longley.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/lynx.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/morley.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/mtcars.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/nhtemp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/nottem.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/npk.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/occupationalStatus.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/penguins.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/precip.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/presidents.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/pressure.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/quakes.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/randu.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/rivers.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/rock.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/sleep.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/stackloss.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/state.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/sunspot.month.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/sunspot.year.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/sunspots.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/swiss.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/treering.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/trees.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/uspop.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/volcano.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/warpbreaks.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/women.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/datasets/html/zCO2.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/foreign/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/foreign/html/lookup.xport.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/foreign/html/read.S.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/foreign/html/read.arff.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/foreign/html/read.dbf.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/foreign/html/read.dta.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/foreign/html/read.epiinfo.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/foreign/html/read.mtp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/foreign/html/read.octave.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/foreign/html/read.spss.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/foreign/html/read.ssd.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/foreign/html/read.systat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/foreign/html/read.xport.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/foreign/html/write.arff.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/foreign/html/write.dbf.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/foreign/html/write.dta.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/foreign/html/write.foreign.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/Devices.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/Hershey.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/Japanese.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/Type1Font.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/adjustcolor.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/as.graphicsAnnot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/as.raster.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/axisTicks.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/boxplot.stats.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/bringToTop.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/cairo.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/cairoSymbolFont.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/check.options.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/chull.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/cm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/col2rgb.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/colorRamp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/colors.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/contourLines.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/convertColor.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/densCols.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/dev.capabilities.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/dev.capture.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/dev.flush.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/dev.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/dev.interactive.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/dev.size.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/dev2.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/dev2bitmap.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/devAskNewPage.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/embedFonts.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/extendrange.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/getGraphicsEvent.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/glyphInfo.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/grDevices-defunct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/grDevices-internal.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/grDevices-package.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/grSoftVersion.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/gray.colors.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/gray.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/hcl.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/hsv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/make.rgb.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/msgWindow.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/n2mfrow.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/nclass.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/palette.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/palettes.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/pdf.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/pdf.options.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/pictex.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/plotmath.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/png.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/postscript.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/postscriptFonts.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/pretty.Date.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/ps.options.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/quartz.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/quartzFonts.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/recordGraphics.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/recordplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/rgb.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/rgb2hsv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/savePlot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/trans3d.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/windows.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/windows.options.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/windowsFonts.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/x11.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/x11Fonts.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/xy.coords.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/xyTable.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/html/xyz.coords.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/abline.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/arrows.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/assocplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/axTicks.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/axis.POSIXct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/axis.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/barplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/box.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/boxplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/boxplot.matrix.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/bxp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/cdplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/clip.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/contour.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/convertXY.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/coplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/curve.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/dotchart.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/filled.contour.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/fourfoldplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/frame.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/graphics-defunct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/graphics-package.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/grid.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/hist.POSIXt.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/hist.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/identify.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/image.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/layout.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/legend.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/lines.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/locator.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/matplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/mosaicplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/mtext.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/pairs.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/panel.smooth.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/par.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/persp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/pie.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/plot.dataframe.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/plot.default.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/plot.design.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/plot.factor.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/plot.formula.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/plot.raster.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/plot.table.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/plot.window.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/plot.xy.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/plothistogram.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/points.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/polygon.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/polypath.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/rasterImage.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/rect.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/rug.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/screen.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/segments.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/smoothScatter.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/spineplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/stars.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/stem.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/stripchart.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/strwidth.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/sunflowerplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/symbols.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/text.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/title.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/units.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/xspline.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/html/zAxis.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/Grid.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/absolute.size.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/arrow.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/as.mask.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/calcStringMetric.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/current.viewport.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/dataViewport.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/depth.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/deviceLoc.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/drawDetails.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/editDetails.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/editViewport.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/explode.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/gEdit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/gPath.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/getNames.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/gpar.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid-defunct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid-internal.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid-package.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.DLapply.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.add.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.bezier.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.cap.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.circle.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.clip.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.convert.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.copy.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.curve.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.delay.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.display.list.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.draw.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.edit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.force.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.frame.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.function.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.get.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.glyph.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.grab.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.grep.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.grill.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.grob.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.group.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.layout.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.lines.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.locator.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.ls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.move.to.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.newpage.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.null.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.pack.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.path.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.place.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.plot.and.legend.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.points.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.polygon.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.pretty.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.raster.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.record.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.rect.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.refresh.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.remove.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.reorder.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.roundrect.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.segments.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.set.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.show.layout.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.show.viewport.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.stroke.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.text.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.xaxis.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.xspline.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grid.yaxis.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/gridCoords.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grobCoords.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grobName.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grobWidth.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/grobX.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/legendGrob.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/makeContent.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/patterns.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/plotViewport.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/resolveRasterSize.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/showGrob.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/showViewport.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/stringWidth.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/unit.c.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/unit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/unit.length.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/unit.pmin.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/unit.rep.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/unitType.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/valid.just.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/validDetails.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/viewport.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/viewportTransform.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/viewports.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/vpPath.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/widthDetails.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/xDetails.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/html/xsplinePoints.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/Lattice.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/Rows.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/USMortality.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/axis.default.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/banking.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/barchart.table.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/barley.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/cloud.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/draw.colorkey.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/draw.key.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/environmental.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/ethanol.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/histogram.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/interaction.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/lattice.options.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/latticeParseFormula.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/level.colors.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/levelplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/llines.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/lset.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/make.groups.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/melanoma.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/oneway.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/packet.panel.default.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/panel.axis.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/panel.barchart.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/panel.bwplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/panel.cloud.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/panel.densityplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/panel.dotplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/panel.functions.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/panel.histogram.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/panel.levelplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/panel.loess.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/panel.number.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/panel.pairs.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/panel.parallel.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/panel.qqmath.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/panel.qqmathline.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/panel.smoothScatter.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/panel.spline.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/panel.stripplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/panel.superpose.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/panel.violin.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/panel.xyplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/prepanel.default.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/prepanel.functions.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/print.trellis.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/qq.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/qqmath.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/rfs.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/shingles.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/simpleKey.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/simpleTheme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/singer.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/splom.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/standard.theme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/strip.default.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/tmd.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/trellis.device.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/trellis.object.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/trellis.par.get.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/update.trellis.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/utilities.3d.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/xyplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/html/xyplot.ts.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/BasicClasses.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/Classes.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/Classes_Details.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/Documentation.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/EmptyMethodsList-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/EnvironmentClass.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/GenericFunctions.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/Introduction.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/LanguageClasses.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/LinearMethodsList-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/MethodDefinition-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/MethodSupport.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/MethodWithNext-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/Methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/Methods_Details.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/Methods_for_Nongenerics.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/Methods_for_S3.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/NextMethod.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/ObjectsWithPackage-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/RClassUtils.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/RMethodUtils.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/S3Part.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/S4groupGeneric.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/SClassExtension-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/StructureClasses.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/TraceClasses.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/as.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/callGeneric.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/canCoerce.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/cbind2.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/className.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/classRepresentation-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/classesToAM.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/dotsMethods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/evalSource.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/findClass.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/findMethods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/fixPrevious.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/genericFunction-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/getClass.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/getMethod.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/getPackageName.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/hasArg.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/implicitGeneric.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/inheritedSlotNames.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/initialize-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/is.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/isSealedMethod.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/languageEl.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/loadMethod.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/localRefClass.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/method.skeleton.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/methodUtilities.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/methods-defunct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/methods-deprecated.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/methods-package.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/new.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/nonStructure-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/promptClass.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/promptMethods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/refClass.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/removeMethod.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/representation.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/selectSuperClasses.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/setAs.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/setClass.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/setClassUnion.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/setGeneric.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/setGroupGeneric.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/setIs.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/setLoadActions.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/setMethod.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/setOldClass.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/setSClass.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/show.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/showMethods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/signature-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/slot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/stdRefClass.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/substituteDirect.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/testInheritedMethods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/validObject.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/html/zBasicFunsList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/Beta.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/FFdes.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/NCV.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/Predict.matrix.cr.smooth.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/Predict.matrix.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/Predict.matrix.soap.film.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/Rrank.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/Sl.initial.repara.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/Sl.repara.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/Sl.setup.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/Tweedie.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/XWXd.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/anova.gam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/bam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/bam.update.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/bandchol.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/blas.thread.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/bug.reports.mgcv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/cSplineDes.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/chol.down.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/choose.k.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/clog.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/cnorm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/columb.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/concurvity.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/coxph.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/coxpht.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/cpois.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/dDeta.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/dpnorm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/exclude.too.far.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/extract.lme.cov.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/factor.smooth.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/family.mgcv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/fix.family.link.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/fixDependence.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/formXtViX.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/formula.gam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/fs.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/full.score.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gam.check.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gam.control.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gam.convergence.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gam.fit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gam.fit3.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gam.fit5.post.proc.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gam.mh.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gam.models.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gam.outer.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gam.reparam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gam.scale.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gam.selection.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gam.side.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gam.vcomp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gam2objective.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gamObject.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gamSim.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gamlss.etamu.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gamlss.gH.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gamm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gammals.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gaulss.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/get.var.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gevlss.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gfam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/ginla.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/gumbls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/identifiability.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/in.out.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/inSide.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/influence.gam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/initial.sp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/interpret.gam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/jagam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/k.check.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/ldTweedie.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/ldetS.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/linear.functional.terms.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/logLik.gam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/lp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/ls.size.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/magic.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/magic.post.proc.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/mchol.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/mgcv-FAQ.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/mgcv-package.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/mgcv-parallel.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/mini.roots.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/missing.data.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/model.matrix.gam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/mono.con.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/mroot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/multinom.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/mvn.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/negbin.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/new.name.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/notExp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/notExp2.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/null.space.dimension.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/ocat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/one.se.rule.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/pcls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/pdIdnot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/pdTens.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/pen.edf.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/place.knots.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/plot.gam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/polys.plot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/predict.bam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/predict.gam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/print.gam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/psum.chisq.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/qq.gam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/rTweedie.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/random.effects.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/residuals.gam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/rig.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/rmvn.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/s.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/scat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/sdiag.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/shash.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/single.index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/slanczos.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/smooth.construct.ad.smooth.spec.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/smooth.construct.bs.smooth.spec.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/smooth.construct.cr.smooth.spec.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/smooth.construct.ds.smooth.spec.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/smooth.construct.fs.smooth.spec.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/smooth.construct.gp.smooth.spec.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/smooth.construct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/smooth.construct.mrf.smooth.spec.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/smooth.construct.ps.smooth.spec.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/smooth.construct.re.smooth.spec.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/smooth.construct.so.smooth.spec.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/smooth.construct.sos.smooth.spec.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/smooth.construct.sz.smooth.spec.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/smooth.construct.t2.smooth.spec.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/smooth.construct.tensor.smooth.spec.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/smooth.construct.tp.smooth.spec.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/smooth.info.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/smooth.terms.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/smooth2random.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/smoothCon.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/sp.vcov.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/spasm.construct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/step.gam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/summary.gam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/t2.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/te.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/tensor.prod.model.matrix.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/totalPenaltySpace.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/trichol.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/trind.generator.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/twlss.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/uniquecombs.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/vcov.gam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/vis.gam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/ziP.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/html/ziplss.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/ACF.gls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/ACF.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/ACF.lme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Alfalfa.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Assay.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/BodyWeight.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Cefamandole.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Coef.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Covariate.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Covariate.varFunc.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Dialyzer.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Dim.corSpatial.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Dim.corStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Dim.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Dim.pdMat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Earthquake.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Extract.pdMat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Fatigue.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Gasoline.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Glucose.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Glucose2.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Gun.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/IGF.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Initialize.corStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Initialize.glsStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Initialize.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Initialize.lmeStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Initialize.reStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Initialize.varFunc.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/LDEsysMat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Machines.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/MathAchSchool.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/MathAchieve.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Matrix.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Matrix.pdMat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Matrix.reStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Meat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Milk.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Muscle.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Names.formula.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Names.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Names.pdBlocked.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Names.pdMat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Names.reStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Nitrendipene.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Oats.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Orthodont.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Ovary.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Oxboys.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Oxide.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/PBG.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Phenobarb.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Pixel.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Quinidine.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Rail.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/RatPupWeight.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Relaxin.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Remifentanil.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Soybean.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Spruce.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Tetracycline1.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Tetracycline2.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/VarCorr.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Variogram.corExp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Variogram.corGaus.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Variogram.corLin.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Variogram.corRatio.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Variogram.corSpatial.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Variogram.corSpher.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Variogram.default.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Variogram.gls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Variogram.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Variogram.lme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Wafer.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Wheat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/Wheat2.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/allCoef.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/anova.gls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/anova.lme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/as.matrix.corStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/as.matrix.pdMat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/as.matrix.reStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/asOneFormula.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/asTable.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/augPred.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/balancedGrouped.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/bdf.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/coef.corStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/coef.gnls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/coef.lmList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/coef.lme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/coef.modelStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/coef.pdMat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/coef.reStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/coef.varFunc.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/collapse.groupedData.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/collapse.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/compareFits.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/comparePred.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/corAR1.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/corARMA.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/corCAR1.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/corClasses.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/corCompSymm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/corExp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/corFactor.corStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/corFactor.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/corGaus.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/corLin.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/corMatrix.corStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/corMatrix.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/corMatrix.pdMat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/corMatrix.reStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/corNatural.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/corRatio.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/corSpatial.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/corSpher.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/corSymm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/ergoStool.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/fdHess.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/fitted.glsStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/fitted.gnlsStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/fitted.lmList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/fitted.lme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/fitted.lmeStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/fitted.nlmeStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/fixed.effects.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/fixef.lmList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/formula.pdBlocked.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/formula.pdMat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/formula.reStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/gapply.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/getCovariate.corStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/getCovariate.data.frame.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/getCovariate.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/getCovariate.varFunc.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/getCovariateFormula.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/getData.gls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/getData.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/getData.lmList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/getData.lme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/getGroups.corStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/getGroups.data.frame.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/getGroups.gls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/getGroups.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/getGroups.lmList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/getGroups.lme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/getGroups.varFunc.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/getGroupsFormula.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/getResponse.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/getResponseFormula.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/getVarCov.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/gls-internal.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/gls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/glsControl.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/glsObject.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/glsStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/gnls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/gnlsControl.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/gnlsObject.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/gnlsStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/groupedData.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/gsummary.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/intervals.gls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/intervals.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/intervals.lmList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/intervals.lme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/isBalanced.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/isInitialized.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/lmList.groupedData.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/lmList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/lme.groupedData.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/lme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/lme.lmList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/lmeControl.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/lmeObject.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/lmeStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/logDet.corStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/logDet.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/logDet.pdMat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/logDet.reStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/logLik.corStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/logLik.glsStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/logLik.gnls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/logLik.gnlsStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/logLik.lmList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/logLik.lme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/logLik.lmeStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/logLik.reStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/logLik.varFunc.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/model.matrix.reStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/needUpdate.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/needUpdate.modelStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/nlme-deprecated.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/nlme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/nlme.nlsList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/nlmeControl.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/nlmeObject.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/nlmeStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/nlsList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/nlsList.selfStart.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/pairs.compareFits.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/pairs.lmList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/pairs.lme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/pdBlocked.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/pdClasses.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/pdCompSymm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/pdConstruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/pdConstruct.pdBlocked.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/pdDiag.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/pdFactor.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/pdFactor.reStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/pdIdent.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/pdLogChol.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/pdMat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/pdMatrix.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/pdMatrix.reStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/pdNatural.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/pdSymm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/phenoModel.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/plot.ACF.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/plot.Variogram.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/plot.augPred.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/plot.compareFits.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/plot.gls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/plot.intervals.lmList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/plot.lmList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/plot.lme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/plot.nffGroupedData.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/plot.nfnGroupedData.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/plot.nmGroupedData.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/plot.ranef.lmList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/plot.ranef.lme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/pooledSD.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/predict.gls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/predict.gnls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/predict.lmList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/predict.lme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/predict.nlme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/print.summary.pdMat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/print.varFunc.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/qqnorm.gls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/qqnorm.lme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/quinModel.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/random.effects.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/ranef.lmList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/ranef.lme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/reStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/recalc.corStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/recalc.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/recalc.modelStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/recalc.reStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/recalc.varFunc.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/residuals.gls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/residuals.glsStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/residuals.gnlsStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/residuals.lmList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/residuals.lme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/residuals.lmeStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/residuals.nlmeStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/simulate.lme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/solve.pdMat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/solve.reStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/splitFormula.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/summary.corStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/summary.gls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/summary.lmList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/summary.lme.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/summary.modelStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/summary.nlsList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/summary.pdMat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/summary.varFunc.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/update.modelStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/update.varFunc.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/varClasses.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/varComb.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/varConstPower.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/varConstProp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/varExp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/varFixed.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/varFunc.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/varIdent.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/varPower.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/varWeights.glsStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/varWeights.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/html/varWeights.lmeStruct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nnet/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nnet/html/class.ind.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nnet/html/multinom.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nnet/html/nnet.Hess.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nnet/html/nnet.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nnet/html/predict.nnet.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nnet/html/which.is.max.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/parallel/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/parallel/html/RngStream.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/parallel/html/children.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/parallel/html/clusterApply.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/parallel/html/detectCores.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/parallel/html/makeCluster.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/parallel/html/mcaffinity.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/parallel/html/mcfork.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/parallel/html/mclapply.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/parallel/html/mcparallel.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/parallel/html/parallel-package.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/parallel/html/pvec.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/parallel/html/sendData.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/parallel/html/splitIndices.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/car.test.frame.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/car90.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/cu.summary.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/kyphosis.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/labels.rpart.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/meanvar.rpart.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/na.rpart.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/path.rpart.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/plot.rpart.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/plotcp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/post.rpart.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/predict.rpart.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/print.rpart.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/printcp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/prune.rpart.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/residuals.rpart.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/rpart-internal.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/rpart.control.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/rpart.exp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/rpart.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/rpart.object.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/rsq.rpart.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/snip.rpart.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/solder.balance.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/stagec.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/summary.rpart.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/text.rpart.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/html/xpred.rpart.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/spatial/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/spatial/html/Kaver.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/spatial/html/Kenvl.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/spatial/html/Kfn.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/spatial/html/Psim.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/spatial/html/SSI.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/spatial/html/Strauss.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/spatial/html/anova.trls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/spatial/html/correlogram.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/spatial/html/expcov.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/spatial/html/ppgetregion.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/spatial/html/ppinit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/spatial/html/pplik.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/spatial/html/ppregion.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/spatial/html/predict.trls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/spatial/html/prmat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/spatial/html/semat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/spatial/html/surf.gls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/spatial/html/surf.ls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/spatial/html/trls.influence.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/spatial/html/trmat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/spatial/html/variogram.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/splines/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/splines/html/asVector.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/splines/html/backSpline.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/splines/html/bs.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/splines/html/interpSpline.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/splines/html/ns.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/splines/html/periodicSpline.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/splines/html/polySpline.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/splines/html/predict.bSpline.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/splines/html/predict.bs.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/splines/html/splineDesign.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/splines/html/splineKnots.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/splines/html/splineOrder.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/splines/html/splines-package.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/splines/html/xyVector.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/AIC.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/ARMAacf.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/ARMAtoMA.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/Beta.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/Binomial.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/Cauchy.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/Chisquare.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/Distributions.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/Exponential.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/Fdist.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/GammaDist.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/Geometric.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/HoltWinters.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/Hypergeometric.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/IQR.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/KalmanLike.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/Logistic.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/Lognormal.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/Multinom.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/NLSstAsymptotic.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/NLSstClosestX.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/NLSstLfAsymptote.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/NLSstRtAsymptote.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/NegBinomial.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/Normal.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/Pair.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/Poisson.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/SSD.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/SSasymp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/SSasympOff.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/SSasympOrig.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/SSbiexp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/SSfol.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/SSfpl.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/SSgompertz.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/SSlogis.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/SSmicmen.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/SSweibull.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/SignRank.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/Smirnov.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/StructTS.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/TDist.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/Tukey.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/TukeyHSD.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/Uniform.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/Weibull.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/Wilcoxon.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/acf.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/acf2AR.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/add1.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/addmargins.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/aggregate.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/alias.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/anova.glm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/anova.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/anova.lm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/anova.mlm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/ansari.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/aov.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/approxfun.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/ar.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/ar.ols.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/arima.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/arima.sim.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/arima0.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/as.hclust.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/asOneSidedFormula.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/ave.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/bandwidth.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/bartlett.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/binom.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/biplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/biplot.princomp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/birthday.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/box.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/cancor.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/case.names.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/checkMFClasses.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/chisq.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/cmdscale.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/coef.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/complete.cases.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/confint.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/constrOptim.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/contrast.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/contrasts.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/convolve.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/cophenetic.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/cor.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/cor.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/cov.wt.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/cpgram.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/cutree.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/decompose.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/delete.response.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/dendrapply.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/dendrogram.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/density.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/deriv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/deviance.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/df.residual.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/diffinv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/dist.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/dummy.coef.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/ecdf.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/eff.aovlist.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/effects.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/embed.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/expand.model.frame.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/extractAIC.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/factanal.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/factor.scope.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/family.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/fft.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/filter.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/fisher.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/fitted.values.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/fivenum.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/fligner.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/formula.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/formula.nls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/friedman.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/ftable.formula.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/ftable.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/getInitial.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/glm.control.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/glm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/glm.summaries.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/hclust.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/heatmap.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/identify.hclust.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/influence.measures.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/integrate.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/interaction.plot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/is.empty.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/isoreg.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/kernapply.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/kernel.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/kmeans.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/kruskal.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/ks.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/ksmooth.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/lag.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/lag.plot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/line.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/listof.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/lm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/lm.influence.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/lm.summaries.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/lmfit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/loadings.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/loess.control.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/loess.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/logLik.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/loglin.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/lowess.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/ls.diag.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/ls.print.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/lsfit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/mad.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/mahalanobis.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/make.link.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/makepredictcall.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/manova.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/mantelhaen.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/mauchly.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/mcnemar.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/median.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/medpolish.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/model.extract.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/model.frame.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/model.matrix.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/model.tables.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/monthplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/mood.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/na.action.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/na.contiguous.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/na.fail.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/nafns.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/naprint.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/nextn.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/nlm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/nlminb.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/nls.control.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/nls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/nobs.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/numericDeriv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/offset.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/oneway.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/optim.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/optimize.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/order.dendrogram.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/p.adjust.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/pairwise.prop.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/pairwise.t.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/pairwise.table.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/pairwise.wilcox.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/plot.HoltWinters.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/plot.acf.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/plot.density.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/plot.isoreg.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/plot.lm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/plot.ppr.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/plot.profile.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/plot.profile.nls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/plot.spec.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/plot.stepfun.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/plot.ts.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/poisson.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/poly.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/power.anova.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/power.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/power.prop.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/power.t.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/pp.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/ppoints.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/ppr.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/prcomp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/predict.HoltWinters.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/predict.arima.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/predict.glm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/predict.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/predict.lm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/predict.loess.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/predict.nls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/predict.smooth.spline.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/preplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/princomp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/print.power.htest.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/print.ts.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/printCoefmat.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/profile.glm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/profile.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/profile.nls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/proj.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/prop.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/prop.trend.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/qqnorm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/quade.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/quantile.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/r2dtable.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/rWishart.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/read.ftable.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/rect.hclust.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/relevel.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/reorder.dendrogram.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/reorder.factor.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/replications.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/reshape.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/residuals.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/runmed.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/scatter.smooth.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/screeplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/sd.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/se.contrast.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/selfStart.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/setNames.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/shapiro.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/sigma.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/simulate.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/smooth.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/smooth.spline.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/smoothEnds.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/sortedXyData.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/spec.ar.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/spec.pgram.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/spec.taper.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/spectrum.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/splinefun.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/start.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/stat.anova.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/stats-defunct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/stats-deprecated.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/stats-package.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/step.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/stepfun.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/stl.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/stlmethods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/summary.aov.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/summary.glm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/summary.lm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/summary.manova.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/summary.nls.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/summary.princomp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/supsmu.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/symnum.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/t.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/termplot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/terms.formula.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/terms.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/terms.object.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/time.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/toeplitz.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/ts-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/ts.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/ts.plot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/ts.union.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/tsSmooth.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/tsdiag.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/tsp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/uniroot.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/update.formula.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/update.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/var.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/varimax.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/vcov.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/weighted.mean.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/weighted.residuals.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/weights.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/wilcox.test.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/window.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/xtabs.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/html/zC.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats4/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats4/html/coef-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats4/html/confint-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats4/html/logLik-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats4/html/mle-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats4/html/mle.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats4/html/plot-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats4/html/profile-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats4/html/profile.mle-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats4/html/show-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats4/html/stats4-package.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats4/html/summary-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats4/html/summary.mle-class.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats4/html/update-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats4/html/vcov-methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/Surv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/Surv2.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/Surv2data.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/Survmethods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/aareg.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/aeqSurv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/aggregate.survfit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/agreg.fit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/aml.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/anova.coxph.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/attrassign.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/basehaz.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/bladder.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/blogit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/brier.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/cch.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/cgd.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/cgd0.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/cipoisson.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/clogit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/cluster.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/colon.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/concordance.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/concordancefit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/cox.zph.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/coxph.control.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/coxph.detail.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/coxph.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/coxph.object.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/coxph.wtest.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/coxphms.object.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/coxsurv.fit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/diabetic.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/dsurvreg.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/finegray.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/flchain.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/frailty.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/gbsg.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/heart.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/hoel.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/is.ratetable.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/kidney.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/levels.Surv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/lines.survfit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/logLik.coxph.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/logan.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/lung.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/mgus.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/mgus2.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/model.frame.coxph.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/model.matrix.coxph.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/myeloid.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/myeloma.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/nafld.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/neardate.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/nsk.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/nwtco.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/ovarian.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/pbc.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/pbcseq.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/plot.aareg.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/plot.cox.zph.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/plot.survfit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/predict.coxph.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/predict.survreg.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/print.aareg.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/print.summary.coxph.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/print.summary.survexp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/print.summary.survfit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/print.survfit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/pseudo.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/pspline.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/pyears.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/quantile.survfit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/ratetable.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/ratetableDate.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/rats.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/rats2.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/reliability.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/residuals.coxph.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/residuals.survfit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/residuals.survreg.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/retinopathy.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/rhDNase.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/ridge.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/rotterdam.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/royston.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/rttright.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/solder.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/stanford2.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/statefig.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/strata.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/summary.aareg.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/summary.coxph.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/summary.pyears.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/summary.survexp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/summary.survfit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/survSplit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/survcheck.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/survcondense.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/survdiff.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/survexp.fit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/survexp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/survexp.object.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/survexp.us.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/survfit.coxph.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/survfit.formula.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/survfit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/survfit.matrix.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/survfit.object.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/survfit0.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/survfitcoxph.fit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/survival-deprecated.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/survival-internal.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/survobrien.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/survreg.control.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/survreg.distributions.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/survreg.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/survreg.object.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/survregDtest.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/tcut.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/timeline.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/tmerge.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/tobin.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/transplant.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/udca.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/untangle.specials.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/uspop2.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/vcov.coxph.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/veteran.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/xtfrm.Surv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/yates.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/html/yates_setup.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tcltk/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tcltk/html/TclInterface.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tcltk/html/TkCommands.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tcltk/html/TkWidgetcmds.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tcltk/html/TkWidgets.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tcltk/html/tclServiceMode.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tcltk/html/tcltk-defunct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tcltk/html/tcltk-package.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tcltk/html/tkProgressBar.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tcltk/html/tkStartGUI.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tcltk/html/tk_choose.dir.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tcltk/html/tk_choose.files.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tcltk/html/tk_messageBox.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tcltk/html/tk_select.list.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tcltk/html/tkpager.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/CRANtools.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/HTMLheader.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/HTMLlinks.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/QC.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/R.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/Rcmd.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/Rd2HTML.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/Rd2txt_options.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/RdTextFilter.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/Rdiff.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/Rdindex.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/Rdutils.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/SweaveTeXFilter.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/add_datalist.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/assertCondition.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/basetools.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/bibstyle.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/buildVignette.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/buildVignettes.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/charsets.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/checkFF.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/checkMD5sums.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/checkPoFiles.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/checkRd.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/checkRdaFiles.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/checkTnF.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/checkVignettes.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/check_packages_in_dir.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/codoc.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/compactPDF.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/delimMatch.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/dependsOnPkgs.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/doitools.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/encoded.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/fileutils.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/find_gs_cmd.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/getVignetteInfo.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/licensetools.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/loadRdMacros.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/makeLazyLoading.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/make_translations_pkg.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/makevars.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/matchConcordance.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/md5sum.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/package_dependencies.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/package_native_routine_registration_skeleton.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/parseLatex.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/parse_Rd.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/pkg2HTML.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/print.via.format.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/pskill.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/psnice.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/read.00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/sha256sum.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/showNonASCII.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/startDynamicHelp.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/testInstalledPackage.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/texi2dvi.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/toHTML.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/toRd.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/toTitleCase.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/tools-defunct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/tools-deprecated.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/tools-package.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/undoc.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/updatePACKAGES.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/update_pkg_po.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/urltools.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/userdir.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/vignetteEngine.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/vignetteInfo.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/writePACKAGES.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/html/xgettext.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/00Index.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/BATCH.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/COMPILE.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/DLL.version.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/INSTALL.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/LINK.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/PkgUtils.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/Question.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/REMOVE.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/RHOME.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/RShowDoc.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/RSiteSearch.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/Rconsole.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/Rprof.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/Rprofmem.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/Rscript.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/Rtangle.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/RweaveLatex.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/SHLIB.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/Sweave.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/SweaveSyntConv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/SweaveUtils.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/URLencode.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/View.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/adist.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/alarm.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/apropos.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/aregexec.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/arrangeWindows.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/askYesNo.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/aspell-utils.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/aspell.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/available.packages.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/bibentry.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/browseEnv.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/browseURL.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/browseVignettes.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/bug.report.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/capture.output.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/changedFiles.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/charClass.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/choose.dir.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/choose.files.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/chooseBioCmirror.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/chooseCRANmirror.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/citEntry.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/citation.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/cite.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/clipboard.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/close.socket.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/combn.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/compareVersion.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/contrib.url.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/count.fields.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/create.post.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/data.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/dataentry.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/debugcall.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/debugger.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/demo.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/download.file.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/download.packages.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/edit.data.frame.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/edit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/example.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/file.edit.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/filetest.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/findCRANmirror.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/findLineNum.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/fix.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/flush.console.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/format.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/getAnywhere.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/getFromNamespace.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/getParseData.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/getS3method.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/getWindowsHandle.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/getWindowsHandles.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/glob2rx.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/globalVariables.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/hasName.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/hashtab.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/head.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/help.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/help.request.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/help.search.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/help.start.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/hsearch-utils.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/install.packages.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/installed.packages.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/isS3method.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/isS3stdGen.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/localeToCharset.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/ls_str.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/maintainer.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/make.packages.html.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/make.socket.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/memory.size.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/menu.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/methods.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/mirrorAdmin.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/modifyList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/news.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/nsl.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/object.size.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/package.skeleton.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/packageDescription.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/packageName.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/packageStatus.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/page.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/person.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/personList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/process.events.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/prompt.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/promptData.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/promptPackage.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/rcompgen.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/read.DIF.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/read.fortran.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/read.fwf.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/read.socket.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/read.table.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/readRegistry.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/recover.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/relist.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/remove.packages.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/removeSource.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/roman.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/rtags.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/savehistory.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/select.list.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/sessionInfo.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/setRepositories.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/setWindowTitle.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/shortPathName.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/sourceutils.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/stack.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/str.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/strcapture.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/summaryRprof.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/tar.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/toLatex.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/txtProgressBar.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/type.convert.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/untar.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/unzip.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/update.packages.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/upgrade.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/url.show.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/utils-defunct.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/utils-deprecated.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/utils-internal.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/utils-package.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/vignette.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/warnErrList.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/winDialog.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/winMenus.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/winProgressBar.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/winextras.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/write.table.html + for i in /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/html/zip.html + chmod +x /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/R/sh/echo.sh + chmod +x /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/BATCH /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/COMPILE /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/INSTALL /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/LINK /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/R /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/REMOVE /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/Rcmd /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/Rd2pdf /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/Rdconv /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/Rdiff /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/Rprof /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/Rscript /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/SHLIB /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/Stangle /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/Sweave /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/build /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/check /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/config /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/exec /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/javareconf /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/libtool /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/mkinstalldirs /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/pager /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/rtags + chmod -x /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/CITATION /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/doc/R/CAPABILITIES + '[' '!' -d /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/include ']' + pushd /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R ~/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R ~/build/BUILD/R-4.5.2 + ln -s ../../include/R include + popd ~/build/BUILD/R-4.5.2 + for i in tex/latex bibtex/bib bibtex/bst + mkdir -p /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/texlive/texmf-dist/tex/latex + cd /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/texlive/texmf-dist/tex/latex + ln -s /usr/share/R/texmf/tex/latex R + for i in tex/latex bibtex/bib bibtex/bst + mkdir -p /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/texlive/texmf-dist/bibtex/bib + cd /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/texlive/texmf-dist/bibtex/bib + ln -s /usr/share/R/texmf/bibtex/bib R + for i in tex/latex bibtex/bib bibtex/bst + mkdir -p /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/texlive/texmf-dist/bibtex/bst + cd /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/texlive/texmf-dist/bibtex/bst + ln -s /usr/share/R/texmf/bibtex/bst R + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 4.5.2-1.el9.1.eel9 --unique-debug-suffix -4.5.2-1.el9.1.eel9.x86_64 --unique-debug-src-base R-4.5.2-1.el9.1.eel9.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/R-4.5.2 extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/bin/Rscript extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/lib/libR.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/exec/R extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/Rscript extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/MASS/libs/MASS.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/KernSmooth/libs/KernSmooth.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/Matrix/libs/Matrix.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/class/libs/class.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/cluster/libs/cluster.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/foreign/libs/foreign.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/libs/cairo.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grDevices/libs/grDevices.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/graphics/libs/graphics.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/grid/libs/grid.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/lattice/libs/lattice.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/methods/libs/methods.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/mgcv/libs/mgcv.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nlme/libs/nlme.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/nnet/libs/nnet.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/parallel/libs/parallel.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/rpart/libs/rpart.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/spatial/libs/spatial.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/splines/libs/splines.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/stats/libs/stats.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/survival/libs/survival.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tcltk/libs/tcltk.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/tools/libs/tools.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/library/utils/libs/utils.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/modules/R_X11.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/modules/R_de.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/modules/internet.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/modules/lapack.so extracting debug info from /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/libRmath.so original debug info size: 25476kB, size after compression: 23808kB /usr/bin/sepdebugcrcfix: Updated 33 CRC32s, 0 CRC32s did match. 21033 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs --files /usr/lib64/R/bin/ mangling shebang in /usr/bin/R from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/share/R/sh/echo.sh from /bin/sh to #!/usr/bin/sh Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.hdXZaK + umask 022 + cd /builddir/build/BUILD + cd R-4.5.2 + ulimit -s 16384 + TZ=Europe/Paris + make check make[1]: Entering directory '/builddir/build/BUILD/R-4.5.2/tests' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/tests' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/tests/Examples' Testing examples for package 'base' Testing examples for package 'tools' comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK Testing examples for package 'utils' Testing examples for package 'grDevices' comparing 'grDevices-Ex.Rout' to 'grDevices-Ex.Rout.save' ... OK Testing examples for package 'graphics' comparing 'graphics-Ex.Rout' to 'graphics-Ex.Rout.save' ... OK Testing examples for package 'stats' comparing 'stats-Ex.Rout' to 'stats-Ex.Rout.save' ... NOTE 401,402d400 < Warning in HoltWinters(co2) : < optimization difficulties: ERROR: ABNORMAL_TERMINATION_IN_LNSRCH 7538,7539c7536,7537 < Fisher's Exact Test for Count Data hybrid using asym.chisq. iff < (exp=5, perc=80, Emin=1) --- > Fisher's Exact Test for Count Data hybrid using asym.chisq. iff (exp=5, > perc=80, Emin=1) 12925,12926d12922 < Warning in HoltWinters(co2) : < optimization difficulties: ERROR: ABNORMAL_TERMINATION_IN_LNSRCH 14253,14254c14249 < 4-sample test for equality of proportions without continuity < correction --- > 4-sample test for equality of proportions without continuity correction 14283,14284c14278 < 4-sample test for equality of proportions without continuity < correction --- > 4-sample test for equality of proportions without continuity correction Testing examples for package 'datasets' comparing 'datasets-Ex.Rout' to 'datasets-Ex.Rout.save' ... OK Testing examples for package 'methods' Testing examples for package 'grid' comparing 'grid-Ex.Rout' to 'grid-Ex.Rout.save' ... OK Testing examples for package 'splines' comparing 'splines-Ex.Rout' to 'splines-Ex.Rout.save' ... OK Testing examples for package 'stats4' comparing 'stats4-Ex.Rout' to 'stats4-Ex.Rout.save' ... OK Testing examples for package 'tcltk' Testing examples for package 'compiler' Testing examples for package 'parallel' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/tests/Examples' make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/tests' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/tests' running strict specific tests make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/tests' running code in 'eval-etc.R' ... OK comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ... OK running code in 'simple-true.R' ... OK comparing 'simple-true.Rout' to './simple-true.Rout.save' ... OK running code in 'arith-true.R' ... OK comparing 'arith-true.Rout' to './arith-true.Rout.save' ... OK running code in 'arith.R' ... OK comparing 'arith.Rout' to './arith.Rout.save' ... OK running code in 'lm-tests.R' ... OK comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ... OK running code in 'ok-errors.R' ... OK comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ... OK running code in 'method-dispatch.R' ... OK comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ... OK running code in 'any-all.R' ... OK comparing 'any-all.Rout' to './any-all.Rout.save' ... OK running code in 'structure.R' ... OK comparing 'structure.Rout' to './structure.Rout.save' ... OK running code in 'd-p-q-r-tests.R' ... OK comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ... OK make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/tests' running sloppy specific tests make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/tests' running code in 'complex.R' ... OK comparing 'complex.Rout' to './complex.Rout.save' ... OK running code in 'print-tests.R' ... OK comparing 'print-tests.Rout' to './print-tests.Rout.save' ... OK running code in 'lapack.R' ... OK comparing 'lapack.Rout' to './lapack.Rout.save' ... OK running code in 'datasets.R' ... OK comparing 'datasets.Rout' to './datasets.Rout.save' ... OK running code in 'datetime.R' ... OK comparing 'datetime.Rout' to './datetime.Rout.save' ... OK running code in 'iec60559.R' ... OK comparing 'iec60559.Rout' to './iec60559.Rout.save' ... OK running code in 'eval-etc-2.R' ... OK comparing 'eval-etc-2.Rout' to './eval-etc-2.Rout.save' ... OK make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/tests' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/tests' checking Sys.timezone ... make[4]: Entering directory '/builddir/build/BUILD/R-4.5.2/tests' running code in 'timezone.R' ... OK make[4]: Leaving directory '/builddir/build/BUILD/R-4.5.2/tests' make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/tests' make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/tests' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/tests' running regression tests ... make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/tests' running code in 'array-subset.R' ... OK running code in 'classes-methods.R' ... OK running code in 'reg-tests-1a.R' ... OK running code in 'reg-tests-1b.R' ... OK running code in 'reg-tests-1c.R' ... OK running code in 'reg-tests-1d.R' ... OK running code in 'reg-tests-1e.R' ... OK running code in 'reg-tests-2.R' ... OK comparing 'reg-tests-2.Rout' to './reg-tests-2.Rout.save' ... OK running code in 'reg-examples1.R' ... OK running code in 'reg-examples2.R' ... OK running code in 'reg-packages.R' ... OK running code in 'p-qbeta-strict-tst.R' ... OK running code in 'd-p-q-r-tst-2.R' ... OK running code in 'r-strict-tst.R' ... OK running code in 'reg-IO.R' ... OK comparing 'reg-IO.Rout' to './reg-IO.Rout.save' ... OK running code in 'reg-IO2.R' ... OK comparing 'reg-IO2.Rout' to './reg-IO2.Rout.save' ... OK running code in 'reg-plot.R' ... OK comparing 'reg-plot.pdf' to './reg-plot.pdf.save' ... OK running code in 'reg-S4.R' ... OK comparing 'reg-S4.Rout' to './reg-S4.Rout.save' ... OK running code in 'reg-S4-examples.R' ... OK running code in 'reg-BLAS.R' ... OK make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/tests' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/tests' running code in 'reg-encodings.R' ... OK make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/tests' make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/tests' running code in 'reg-tests-3.R' ... OK comparing 'reg-tests-3.Rout' to './reg-tests-3.Rout.save' ... OK running code in 'reg-examples3.R' ... OK comparing 'reg-examples3.Rout' to './reg-examples3.Rout.save' ... OK running tests of plotting Latin-1 expect failure or some differences if not in a Latin-1 or UTF-8 locale running code in 'reg-plot-latin1.R' ... FAILED make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/tests' make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/tests' make[2]: Entering directory '/builddir/build/BUILD/R-4.5.2/tests' running tests of Internet functions make[3]: Entering directory '/builddir/build/BUILD/R-4.5.2/tests' running code in 'internet.R' ... OK comparing 'internet.Rout' to './internet.Rout.save' ...8,10c8,153 < Warning message: < In nsl("cran.r-project.org") : < nsl() was unable to resolve host 'cran.r-project.org' --- > > > > ## As virtually all http sites redirect to https:, we only test the latter > > > > # test do_download (and "record" #{packages}): > > ap <- available.packages(contrib.url("https://cran.r-project.org")) > > ## IGNORE_RDIFF_END > > > > # test url connections > > zz <- url("https://cran.r-project.org/") > > readLines(zz) > [1] "" > [2] "" > [3] "" > [4] "The Comprehensive R Archive Network" > [5] "" > [6] "" > [7] "" > [8] "" > [9] "" > [10] "" > [11] "" > [12] "" > [13] "" > [14] "" > [15] "" > [16] "" > [17] "" > [18] "<h1>The Comprehensive R Archive Network</h1>" > [19] "" > [20] "Your browser seems not to support frames," > [21] "here is the <A href=\"navbar.html\">contents page</A> of CRAN." > [22] "" > [23] "" > [24] "" > > close(zz) > > > > # and via read.table, using an r-project.org site > > read.table("https://developer.R-project.org/inet-tests/ch11b.dat") > V1 V2 V3 V4 V5 > 1 1 307 930 36.58 0 > 2 2 307 940 36.73 0 > 3 3 307 950 36.93 0 > 4 4 307 1000 37.15 0 > 5 5 307 1010 37.23 0 > 6 6 307 1020 37.24 0 > 7 7 307 1030 37.24 0 > 8 8 307 1040 36.90 0 > 9 9 307 1050 36.95 0 > 10 10 307 1100 36.89 0 > 11 11 307 1110 36.95 0 > 12 12 307 1120 37.00 0 > 13 13 307 1130 36.90 0 > 14 14 307 1140 36.99 0 > 15 15 307 1150 36.99 0 > 16 16 307 1200 37.01 0 > 17 17 307 1210 37.04 0 > 18 18 307 1220 37.04 0 > 19 19 307 1230 37.14 0 > 20 20 307 1240 37.07 0 > 21 21 307 1250 36.98 0 > 22 22 307 1300 37.01 0 > 23 23 307 1310 36.97 0 > 24 24 307 1320 36.97 0 > 25 25 307 1330 37.12 0 > 26 26 307 1340 37.13 0 > 27 27 307 1350 37.14 0 > 28 28 307 1400 37.15 0 > 29 29 307 1410 37.17 0 > 30 30 307 1420 37.12 0 > 31 31 307 1430 37.12 0 > 32 32 307 1440 37.17 0 > 33 33 307 1450 37.28 0 > 34 34 307 1500 37.28 0 > 35 35 307 1510 37.44 0 > 36 36 307 1520 37.51 0 > 37 37 307 1530 37.64 0 > 38 38 307 1540 37.51 0 > 39 39 307 1550 37.98 1 > 40 40 307 1600 38.02 1 > 41 41 307 1610 38.00 1 > 42 42 307 1620 38.24 1 > 43 43 307 1630 38.10 1 > 44 44 307 1640 38.24 1 > 45 45 307 1650 38.11 1 > 46 46 307 1700 38.02 1 > 47 47 307 1710 38.11 1 > 48 48 307 1720 38.01 1 > 49 49 307 1730 37.91 1 > 50 50 307 1740 37.96 1 > 51 51 307 1750 38.03 1 > 52 52 307 1800 38.17 1 > 53 53 307 1810 38.19 1 > 54 54 307 1820 38.18 1 > 55 55 307 1830 38.15 1 > 56 56 307 1840 38.04 1 > 57 57 307 1850 37.96 1 > 58 58 307 1900 37.84 1 > 59 59 307 1910 37.83 1 > 60 60 307 1920 37.84 1 > 61 61 307 1930 37.74 1 > 62 62 307 1940 37.76 1 > 63 63 307 1950 37.76 1 > 64 64 307 2000 37.64 1 > 65 65 307 2010 37.63 1 > 66 66 307 2020 38.06 1 > 67 67 307 2030 38.19 1 > 68 68 307 2040 38.35 1 > 69 69 307 2050 38.25 1 > 70 70 307 2100 37.86 1 > 71 71 307 2110 37.95 1 > 72 72 307 2120 37.95 1 > 73 73 307 2130 37.76 1 > 74 74 307 2140 37.60 1 > 75 75 307 2150 37.89 1 > 76 76 307 2200 37.86 1 > 77 77 307 2210 37.71 1 > 78 78 307 2220 37.78 1 > 79 79 307 2230 37.82 1 > 80 80 307 2240 37.76 1 > 81 81 307 2250 37.81 1 > 82 82 307 2300 37.84 1 > 83 83 307 2310 38.01 1 > 84 84 307 2320 38.10 1 > 85 85 307 2330 38.15 1 > 86 86 307 2340 37.92 1 > 87 87 307 2350 37.64 1 > 88 88 308 0 37.70 1 > 89 89 308 10 37.46 1 > 90 90 308 20 37.41 1 > 91 91 308 30 37.46 1 > 92 92 308 40 37.56 1 > 93 93 308 50 37.55 1 > 94 94 308 100 37.75 1 > 95 95 308 110 37.76 1 > 96 96 308 120 37.73 1 > 97 97 308 130 37.77 1 > 98 98 308 140 38.01 1 > 99 99 308 150 38.04 1 > 100 100 308 200 38.07 1 > > > > showConnections(all = TRUE) > description class mode text isopen can read can write > 0 "stdin" "terminal" "r" "text" "opened" "yes" "no" > 1 "stdout" "terminal" "w" "text" "opened" "no" "yes" > 2 "stderr" "terminal" "w" "text" "opened" "no" "yes" > > OK make[3]: Leaving directory '/builddir/build/BUILD/R-4.5.2/tests' make[2]: Leaving directory '/builddir/build/BUILD/R-4.5.2/tests' make[1]: Leaving directory '/builddir/build/BUILD/R-4.5.2/tests' + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-4.5.2-1.el9.1.eel9.x86_64 Processing files: R-core-4.5.2-1.el9.1.eel9.x86_64 warning: Duplicate build-ids /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/bin/Rscript and /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib64/R/bin/Rscript warning: absolute symlink: /usr/share/texlive/texmf-dist/bibtex/bib/R -> /usr/share/R/texmf/bibtex/bib warning: absolute symlink: /usr/share/texlive/texmf-dist/bibtex/bst/R -> /usr/share/R/texmf/bibtex/bst warning: absolute symlink: /usr/share/texlive/texmf-dist/tex/latex/R -> /usr/share/R/texmf/tex/latex Provides: R(ABI) = 4.5 R(KernSmooth) = 2.23.26 R(MASS) = 7.3.65 R(Matrix) = 1.7.4 R(base) = 4.5.2 R(boot) = 1.3.32 R(class) = 7.3.23 R(cluster) = 2.1.8.1 R(codetools) = 0.2.20 R(compiler) = 4.5.2 R(datasets) = 4.5.2 R(foreign) = 0.8.90 R(grDevices) = 4.5.2 R(graphics) = 4.5.2 R(grid) = 4.5.2 R(lattice) = 0.22.7 R(methods) = 4.5.2 R(mgcv) = 1.9.3 R(nlme) = 3.1.168 R(nnet) = 7.3.20 R(parallel) = 4.5.2 R(rpart) = 4.1.24 R(spatial) = 7.3.18 R(splines) = 4.5.2 R(stats) = 4.5.2 R(stats4) = 4.5.2 R(survival) = 3.8.3 R(tcltk) = 4.5.2 R(tools) = 4.5.2 R(translations) = 4.5.2 R(utils) = 4.5.2 R-KernSmooth = 2.23.26 R-MASS = 7.3.65 R-Matrix = 1.7.4 R-base = 4.5.2 R-boot = 1.3.32 R-class = 7.3.23 R-cluster = 2.1.8.1 R-codetools = 0.2.20 R-compiler = 4.5.2 R-core = 4.5.2-1.el9.1.eel9 R-core(x86-64) = 4.5.2-1.el9.1.eel9 R-datasets = 4.5.2 R-foreign = 0.8.90 R-grDevices = 4.5.2 R-graphics = 4.5.2 R-grid = 4.5.2 R-lattice = 0.22.7 R-methods = 4.5.2 R-mgcv = 1.9.3 R-nlme = 3.1.168 R-nnet = 7.3.20 R-parallel = 4.5.2 R-rpart = 4.1.24 R-spatial = 7.3.18 R-splines = 4.5.2 R-stats = 4.5.2 R-stats4 = 4.5.2 R-survival = 3.8.3 R-tcltk = 4.5.2 R-tools = 4.5.2 R-translations = 4.5.2 R-utils = 4.5.2 config(R-core) = 4.5.2-1.el9.1.eel9 libR.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /bin/sh /usr/bin/sh ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.2.5)(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libR.so()(64bit) libX11.so.6()(64bit) libXmu.so.6()(64bit) libXt.so.6()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.16)(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.27)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.2)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.6)(64bit) libc.so.6(GLIBC_2.7)(64bit) libc.so.6(GLIBC_2.8)(64bit) libcairo.so.2()(64bit) libcurl.so.4()(64bit) libdeflate.so.0()(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libgobject-2.0.so.0()(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libicui18n.so.67()(64bit) libicuuc.so.67()(64bit) libjpeg.so.62()(64bit) libjpeg.so.62(LIBJPEG_6.2)(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libpango-1.0.so.0()(64bit) libpangocairo-1.0.so.0()(64bit) libpcre2-8.so.0()(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libreadline.so.8()(64bit) libtcl8.6.so()(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) libtirpc.so.3()(64bit) libtirpc.so.3(TIRPC_0.3.0)(64bit) libtk8.6.so()(64bit) libtre.so.5()(64bit) libz.so.1()(64bit) libzstd.so.1()(64bit) rtld(GNU_HASH) Obsoletes: R-Matrix < 0.999375-7 Processing files: R-core-devel-4.5.2-1.el9.1.eel9.x86_64 Provides: R-Matrix-devel = 1.7.4 R-core-devel = 4.5.2-1.el9.1.eel9 R-core-devel(x86-64) = 4.5.2-1.el9.1.eel9 pkgconfig(libR) = 4.5.2 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config Obsoletes: R-Matrix-devel < 0.999375-7 Recommends: devscripts-checkbashisms tex(latex) texinfo-tex tidy Processing files: R-devel-4.5.2-1.el9.1.eel9.x86_64 Processing files: R-java-4.5.2-1.el9.1.eel9.x86_64 Processing files: R-java-devel-4.5.2-1.el9.1.eel9.x86_64 Processing files: libRmath-4.5.2-1.el9.1.eel9.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.1O36gZ + umask 022 + cd /builddir/build/BUILD + cd R-4.5.2 + LICENSEDIR=/builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/licenses/libRmath + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/licenses/libRmath + cp -pr doc/COPYING /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/share/licenses/libRmath + RPM_EC=0 ++ jobs -p + exit 0 Provides: libRmath = 4.5.2-1.el9.1.eel9 libRmath(x86-64) = 4.5.2-1.el9.1.eel9 libRmath.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) rtld(GNU_HASH) Processing files: libRmath-devel-4.5.2-1.el9.1.eel9.x86_64 Provides: libRmath-devel = 4.5.2-1.el9.1.eel9 libRmath-devel(x86-64) = 4.5.2-1.el9.1.eel9 pkgconfig(libRmath) = 4.5.2 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config Processing files: libRmath-static-4.5.2-1.el9.1.eel9.x86_64 Provides: libRmath-static = 4.5.2-1.el9.1.eel9 libRmath-static(x86-64) = 4.5.2-1.el9.1.eel9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-debugsource-4.5.2-1.el9.1.eel9.x86_64 Provides: R-debugsource = 4.5.2-1.el9.1.eel9 R-debugsource(x86-64) = 4.5.2-1.el9.1.eel9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-debuginfo-4.5.2-1.el9.1.eel9.x86_64 Provides: R-debuginfo = 4.5.2-1.el9.1.eel9 R-debuginfo(x86-64) = 4.5.2-1.el9.1.eel9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-debugsource(x86-64) = 4.5.2-1.el9.1.eel9 Processing files: R-core-debuginfo-4.5.2-1.el9.1.eel9.x86_64 warning: Duplicate build-ids /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib/debug/usr/bin/Rscript-4.5.2-1.el9.1.eel9.x86_64.debug and /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64/usr/lib/debug/usr/lib64/R/bin/Rscript-4.5.2-1.el9.1.eel9.x86_64.debug Provides: R-core-debuginfo = 4.5.2-1.el9.1.eel9 R-core-debuginfo(x86-64) = 4.5.2-1.el9.1.eel9 debuginfo(build-id) = 0261fc8f752d443e417bc7a8276d7e22fdeec330 debuginfo(build-id) = 1405e0a0243fca7683151404209782260a0dd170 debuginfo(build-id) = 1696b2427593b945f4f6a4cb067f47b06d1c2f69 debuginfo(build-id) = 210c6c3232976e492db02c4a432929b846439ca5 debuginfo(build-id) = 2b140f07b7ed99e9172baa185d3ae0865a688212 debuginfo(build-id) = 4224c0db57817657d7422dcb5d11b95f5a9776a4 debuginfo(build-id) = 42a5bf1de71339ac15b66b73aa7eaa4e3ead4f89 debuginfo(build-id) = 4c0c46558e78839011c35ee983afe5166115b1f9 debuginfo(build-id) = 54464d7df830af515e2be8853e9f3c782fe9b2c0 debuginfo(build-id) = 58eee88e9ad09e1d97f9c70156684aeb52dcac90 debuginfo(build-id) = 5bea3abd2ffa2ca40a3a530ef15b3b9aa11d01b8 debuginfo(build-id) = 5c0e9d1842d8b1aefdc1c7fa3dacc6bc3dc41325 debuginfo(build-id) = 65a522f6105e749b57fff214b813c036b49ea1a7 debuginfo(build-id) = 66071c165321e9d964bade1893e4c49dd6d8f34c debuginfo(build-id) = 684880d94ec36221588721d29efcba333dc8af40 debuginfo(build-id) = 69998dc4f2231b133f01fbeadad0b83284232fd3 debuginfo(build-id) = 85e488e3c92a420063ca1abab2cd55c52752089a debuginfo(build-id) = 8ac600410ac5080e223ac3015d87059c010676bd debuginfo(build-id) = 926d52c404cb5a42e264229438a58e8efc70bf8e debuginfo(build-id) = 958245c97ec419b7e5dcb57292e4ee5cf5b4e156 debuginfo(build-id) = 994b298e3d6639da4852c9ccd8f53133cc81711e debuginfo(build-id) = 9e4aac437e1724b829c6c8a4b39c94cce27844df debuginfo(build-id) = b41d5a8bc21340dbcf49b07bb49fb1070465a3a6 debuginfo(build-id) = bb92a8f239f8dca6b933108582dab4754f1fa566 debuginfo(build-id) = c14812e069b3dca82183d19a927f07e3f83d1254 debuginfo(build-id) = ca79a7617b9608e77b952393ab36b7383dc4d31b debuginfo(build-id) = cf7ecceb8edf92d2ea02abf2aba1f31369f2097b debuginfo(build-id) = d0a6b9edf5b97cfa0d967df2313a26ac728c1aee debuginfo(build-id) = ef1b80964a2cec74e596d37a82b2d751ee352a59 debuginfo(build-id) = fd57f6f4fd81b657076e38002ead5c2107307492 debuginfo(build-id) = ff1dbd037a8ce7820464b6ea82becec64f34e9d9 debuginfo(build-id) = nilnil Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-debugsource(x86-64) = 4.5.2-1.el9.1.eel9 Processing files: libRmath-debuginfo-4.5.2-1.el9.1.eel9.x86_64 Provides: debuginfo(build-id) = 8d94930cb6e1fc2438e124118372f0eccea39920 libRmath-debuginfo = 4.5.2-1.el9.1.eel9 libRmath-debuginfo(x86-64) = 4.5.2-1.el9.1.eel9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-debugsource(x86-64) = 4.5.2-1.el9.1.eel9 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64 Wrote: /builddir/build/RPMS/libRmath-debuginfo-4.5.2-1.el9.1.eel9.x86_64.rpm Wrote: /builddir/build/RPMS/libRmath-static-4.5.2-1.el9.1.eel9.x86_64.rpm Wrote: /builddir/build/RPMS/R-core-devel-4.5.2-1.el9.1.eel9.x86_64.rpm Wrote: /builddir/build/RPMS/libRmath-4.5.2-1.el9.1.eel9.x86_64.rpm Wrote: /builddir/build/RPMS/R-debuginfo-4.5.2-1.el9.1.eel9.x86_64.rpm Wrote: /builddir/build/RPMS/libRmath-devel-4.5.2-1.el9.1.eel9.x86_64.rpm Wrote: /builddir/build/RPMS/R-4.5.2-1.el9.1.eel9.x86_64.rpm Wrote: /builddir/build/RPMS/R-devel-4.5.2-1.el9.1.eel9.x86_64.rpm Wrote: /builddir/build/RPMS/R-java-4.5.2-1.el9.1.eel9.x86_64.rpm Wrote: /builddir/build/RPMS/R-java-devel-4.5.2-1.el9.1.eel9.x86_64.rpm Wrote: /builddir/build/RPMS/R-debugsource-4.5.2-1.el9.1.eel9.x86_64.rpm Wrote: /builddir/build/RPMS/R-core-debuginfo-4.5.2-1.el9.1.eel9.x86_64.rpm Wrote: /builddir/build/RPMS/R-core-4.5.2-1.el9.1.eel9.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.CBJteV + umask 022 + cd /builddir/build/BUILD + cd R-4.5.2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-4.5.2-1.el9.1.eel9.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild R-4.5.2-1.el9.1.eel9.src.rpm Finish: build phase for R-4.5.2-1.el9.1.eel9.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/centos-stream-9-x86_64-1767858965.000347/root/var/log/dnf.rpm.log /var/lib/mock/centos-stream-9-x86_64-1767858965.000347/root/var/log/dnf.librepo.log /var/lib/mock/centos-stream-9-x86_64-1767858965.000347/root/var/log/dnf.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/R-4.5.2-1.el9.1.eel9.src.rpm) Config(child) 15 minutes 19 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R", "epoch": null, "version": "4.5.2", "release": "1.el9.1.eel9", "arch": "x86_64" }, { "name": "R", "epoch": null, "version": "4.5.2", "release": "1.el9.1.eel9", "arch": "src" }, { "name": "R-java-devel", "epoch": null, "version": "4.5.2", "release": "1.el9.1.eel9", "arch": "x86_64" }, { "name": "R-devel", "epoch": null, "version": "4.5.2", "release": "1.el9.1.eel9", "arch": "x86_64" }, { "name": "R-debugsource", "epoch": null, "version": "4.5.2", "release": "1.el9.1.eel9", "arch": "x86_64" }, { "name": "R-core-debuginfo", "epoch": null, "version": "4.5.2", "release": "1.el9.1.eel9", "arch": "x86_64" }, { "name": "R-java", "epoch": null, "version": "4.5.2", "release": "1.el9.1.eel9", "arch": "x86_64" }, { "name": "libRmath-debuginfo", "epoch": null, "version": "4.5.2", "release": "1.el9.1.eel9", "arch": "x86_64" }, { "name": "R-debuginfo", "epoch": null, "version": "4.5.2", "release": "1.el9.1.eel9", "arch": "x86_64" }, { "name": "R-core-devel", "epoch": null, "version": "4.5.2", "release": "1.el9.1.eel9", "arch": "x86_64" }, { "name": "libRmath-static", "epoch": null, "version": "4.5.2", "release": "1.el9.1.eel9", "arch": "x86_64" }, { "name": "libRmath", "epoch": null, "version": "4.5.2", "release": "1.el9.1.eel9", "arch": "x86_64" }, { "name": "libRmath-devel", "epoch": null, "version": "4.5.2", "release": "1.el9.1.eel9", "arch": "x86_64" }, { "name": "R-core", "epoch": null, "version": "4.5.2", "release": "1.el9.1.eel9", "arch": "x86_64" } ] } RPMResults finished