Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c110' (ED25519) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5015472 --chroot fedora-rawhide-x86_64 --detached Version: 0.61 PID: 26812 Logging PID: 26813 Task: {'appstream': False, 'background': True, 'build_id': 5015472, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'f1ba234fb0b860c68056ee0d43332d38e8555cee', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/djdelorie/make-4.4/hmmer', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'hmmer', 'package_version': '3.3.2-2', 'project_dirname': 'make-4.4', 'project_name': 'make-4.4', 'project_owner': 'djdelorie', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/djdelorie/make-4.4/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}], 'sandbox': 'djdelorie/make-4.4--djdelorie', 'source_json': {}, 'source_type': None, 'submitter': 'djdelorie', 'tags': [], 'task_id': '5015472-fedora-rawhide-x86_64', 'timeout': 108000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/djdelorie/make-4.4/hmmer /var/lib/copr-rpmbuild/workspace/workdir-yimzir72/hmmer --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/djdelorie/make-4.4/hmmer', '/var/lib/copr-rpmbuild/workspace/workdir-yimzir72/hmmer', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-yimzir72/hmmer'... Running: git checkout f1ba234fb0b860c68056ee0d43332d38e8555cee cmd: ['git', 'checkout', 'f1ba234fb0b860c68056ee0d43332d38e8555cee'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-yimzir72/hmmer rc: 0 stdout: stderr: Note: switching to 'f1ba234fb0b860c68056ee0d43332d38e8555cee'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at f1ba234 automatic import of hmmer Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-yimzir72/hmmer rc: 0 stdout: /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading hmmer-3.3.2.tar.gz INFO: Calling: curl -H Pragma: -o hmmer-3.3.2.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/djdelorie/make-4.4/hmmer/hmmer-3.3.2.tar.gz/md5/ea03d88b4e8228a1dc6d84d56af27195/hmmer-3.3.2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 17.3M 100 17.3M 0 0 20.2M 0 --:--:-- --:--:-- --:--:-- 20.1M INFO: Reading stdout from command: md5sum hmmer-3.3.2.tar.gz Running (timeout=108000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-yimzir72/hmmer/hmmer.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-yimzir72/hmmer --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1667986838.110086 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.3 starting (python version = 3.10.4, NVR = mock-3.3-1.fc35)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-yimzir72/hmmer/hmmer.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1667986838.110086/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.3 INFO: Mock Version: 3.3 Start(bootstrap): dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 59 MB/s | 21 MB 00:00 fedora 20 MB/s | 65 MB 00:03 Last metadata expiration check: 0:00:04 ago on Wed Nov 9 09:40:46 2022. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: dnf noarch 4.14.0-1.fc38 fedora 480 k dnf-plugins-core noarch 4.3.1-1.fc38 fedora 34 k Installing dependencies: alternatives x86_64 1.21-1.fc38 copr_base 38 k audit-libs x86_64 3.0.9-1.fc38 fedora 116 k basesystem noarch 11-14.fc37 fedora 7.0 k bash x86_64 5.2.2-2.fc38 fedora 1.8 M bzip2-libs x86_64 1.0.8-12.fc38 copr_base 42 k ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k coreutils x86_64 9.1-8.fc38 copr_base 1.1 M coreutils-common x86_64 9.1-8.fc38 copr_base 2.0 M crypto-policies noarch 20221003-1.gitcb1ad32.fc38 fedora 86 k curl x86_64 7.86.0-2.fc38 fedora 334 k cyrus-sasl-lib x86_64 2.1.28-8.fc38 fedora 792 k dbus-libs x86_64 1:1.14.4-1.fc38 fedora 156 k dnf-data noarch 4.14.0-1.fc38 fedora 43 k elfutils-default-yama-scope noarch 0.188-3.fc38 fedora 15 k elfutils-libelf x86_64 0.188-3.fc38 fedora 196 k elfutils-libs x86_64 0.188-3.fc38 fedora 257 k expat x86_64 2.4.8-2.fc37 fedora 110 k fedora-gpg-keys noarch 38-0.3 fedora 125 k fedora-release noarch 38-0.4 fedora 11 k fedora-release-common noarch 38-0.4 fedora 22 k fedora-release-identity-basic noarch 38-0.4 fedora 12 k fedora-repos noarch 38-0.3 fedora 10 k fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k file-libs x86_64 5.42-4.fc38 copr_base 676 k filesystem x86_64 3.18-2.fc37 fedora 1.1 M findutils x86_64 1:4.9.0-2.fc38 copr_base 483 k gawk x86_64 5.1.1-4.fc37 fedora 1.0 M gdbm-libs x86_64 1:1.23-2.fc38 copr_base 56 k glib2 x86_64 2.74.1-2.fc38 fedora 2.7 M glibc x86_64 2.36.9000-11.fc38 fedora 2.1 M glibc-common x86_64 2.36.9000-11.fc38 fedora 301 k glibc-minimal-langpack x86_64 2.36.9000-11.fc38 fedora 22 k gmp x86_64 1:6.2.1-3.fc37 fedora 315 k gnupg2 x86_64 2.3.8-1.fc38 copr_base 2.5 M gnutls x86_64 3.7.8-9.fc38 fedora 1.1 M gpgme x86_64 1.17.0-4.fc37 fedora 210 k grep x86_64 3.8-1.fc38 copr_base 282 k ima-evm-utils x86_64 1.4-6.fc37 fedora 63 k json-c x86_64 0.16-3.fc38 fedora 41 k keyutils-libs x86_64 1.6.1-5.fc38 copr_base 32 k krb5-libs x86_64 1.19.2-11.fc37.1 fedora 727 k libacl x86_64 2.3.1-4.fc37 fedora 23 k libarchive x86_64 3.6.1-2.fc37 fedora 397 k libassuan x86_64 2.5.5-5.fc37 fedora 67 k libattr x86_64 2.5.1-5.fc38 copr_base 18 k libb2 x86_64 0.98.1-7.fc38 copr_base 25 k libblkid x86_64 2.38.1-2.fc38 copr_base 107 k libbrotli x86_64 1.0.9-9.fc37 fedora 315 k libcap x86_64 2.48-5.fc38 copr_base 67 k libcap-ng x86_64 0.8.3-3.fc37 fedora 33 k libcom_err x86_64 1.46.5-3.fc37 fedora 25 k libcomps x86_64 0.1.18-4.fc37 fedora 76 k libcurl x86_64 7.86.0-2.fc38 fedora 305 k libdnf x86_64 0.68.0-1.fc38 fedora 673 k libevent x86_64 2.1.12-7.fc38 copr_base 259 k libffi x86_64 3.4.2-9.fc38 copr_base 38 k libfsverity x86_64 1.4-8.fc38 copr_base 20 k libgcc x86_64 12.2.1-3.fc38 fedora 108 k libgcrypt x86_64 1.10.1-4.fc37 fedora 512 k libgomp x86_64 12.2.1-3.fc38 fedora 295 k libgpg-error x86_64 1.46-1.fc38 fedora 227 k libidn2 x86_64 2.3.4-1.fc38 fedora 160 k libksba x86_64 1.6.2-1.fc38 fedora 158 k libmodulemd x86_64 2.14.0-4.fc37 fedora 234 k libmount x86_64 2.38.1-2.fc38 copr_base 136 k libnghttp2 x86_64 1.50.0-1.fc38 copr_base 75 k libnsl2 x86_64 2.0.0-4.fc38 copr_base 31 k libpsl x86_64 0.21.1-6.fc38 copr_base 64 k librepo x86_64 1.14.4-1.fc38 fedora 94 k libreport-filesystem noarch 2.17.6-1.fc38 fedora 14 k libselinux x86_64 3.4-5.fc37 fedora 86 k libsemanage x86_64 3.4-5.fc37 fedora 120 k libsepol x86_64 3.4-3.fc37 fedora 322 k libsigsegv x86_64 2.14-3.fc38 copr_base 27 k libsmartcols x86_64 2.38.1-2.fc38 copr_base 65 k libsolv x86_64 0.7.22-3.fc37 fedora 405 k libssh x86_64 0.10.4-2.fc38 fedora 209 k libssh-config noarch 0.10.4-2.fc38 fedora 8.8 k libstdc++ x86_64 12.2.1-3.fc38 fedora 799 k libtasn1 x86_64 4.18.0-3.fc37 fedora 75 k libtirpc x86_64 1.3.3-0.fc38 copr_base 94 k libunistring x86_64 1.0-2.fc38 copr_base 549 k libuuid x86_64 2.38.1-2.fc38 copr_base 28 k libverto x86_64 0.3.2-4.fc37 fedora 21 k libxcrypt x86_64 4.4.30-1.fc38 fedora 118 k libxml2 x86_64 2.10.3-2.fc38 fedora 705 k libyaml x86_64 0.2.5-8.fc38 copr_base 60 k libzstd x86_64 1.5.2-3.fc37 fedora 294 k lua-libs x86_64 5.4.4-6.fc38 copr_base 132 k lz4-libs x86_64 1.9.3-5.fc38 copr_base 71 k mpdecimal x86_64 2.5.1-4.fc38 copr_base 102 k mpfr x86_64 4.1.0-10.fc38 copr_base 331 k ncurses-base noarch 6.3-3.20220501.fc37 fedora 86 k ncurses-libs x86_64 6.3-3.20220501.fc37 fedora 329 k nettle x86_64 3.8-2.fc37 fedora 414 k npth x86_64 1.6-10.fc38 fedora 24 k openldap x86_64 2.6.3-1.fc38 fedora 254 k openssl-libs x86_64 1:3.0.5-6.fc38 fedora 2.1 M p11-kit x86_64 0.24.1-3.fc37 fedora 376 k p11-kit-trust x86_64 0.24.1-3.fc37 fedora 138 k pcre2 x86_64 10.40-1.fc37.1 fedora 236 k pcre2-syntax noarch 10.40-1.fc37.1 fedora 142 k popt x86_64 1.19-1.fc38 copr_base 59 k publicsuffix-list-dafsa noarch 20210518-5.fc37 fedora 58 k python-pip-wheel noarch 22.2.2-2.fc38 fedora 1.4 M python-setuptools-wheel noarch 65.5.0-1.fc38 fedora 715 k python3 x86_64 3.11.0-1.fc38 fedora 27 k python3-dateutil noarch 1:2.8.2-4.fc38 copr_base 350 k python3-dbus x86_64 1.3.2-1.fc38 fedora 157 k python3-distro noarch 1.8.0-1.fc38 fedora 49 k python3-dnf noarch 4.14.0-1.fc38 fedora 607 k python3-dnf-plugins-core noarch 4.3.1-1.fc38 fedora 277 k python3-gpg x86_64 1.17.0-4.fc37 fedora 298 k python3-hawkey x86_64 0.68.0-1.fc38 fedora 108 k python3-libcomps x86_64 0.1.18-4.fc37 fedora 48 k python3-libdnf x86_64 0.68.0-1.fc38 fedora 818 k python3-libs x86_64 3.11.0-1.fc38 fedora 9.6 M python3-rpm x86_64 4.18.0-3.fc38 fedora 94 k python3-six noarch 1.16.0-8.fc37 fedora 42 k readline x86_64 8.2-2.fc38 copr_base 211 k rpm x86_64 4.18.0-3.fc38 fedora 570 k rpm-build-libs x86_64 4.18.0-3.fc38 fedora 94 k rpm-libs x86_64 4.18.0-3.fc38 fedora 320 k rpm-sign-libs x86_64 4.18.0-3.fc38 fedora 27 k sed x86_64 4.8-11.fc38 copr_base 297 k setup noarch 2.14.2-1.fc38 fedora 151 k shadow-utils x86_64 2:4.12.3-3.fc38 fedora 1.3 M sqlite-libs x86_64 3.39.4-1.fc38 copr_base 659 k systemd-libs x86_64 252-587.fc38 fedora 631 k tpm2-tss x86_64 3.2.0-3.fc38 copr_base 596 k tzdata noarch 2022f-1.fc38 fedora 715 k xz-libs x86_64 5.2.7-1.fc38 fedora 93 k zchunk-libs x86_64 1.2.3-1.fc38 fedora 51 k zlib x86_64 1.2.12-5.fc38 copr_base 94 k Transaction Summary ================================================================================ Install 136 Packages Total download size: 56 M Installed size: 196 M Downloading Packages: (1/136): alternatives-1.21-1.fc38.x86_64.rpm 954 kB/s | 38 kB 00:00 (2/136): bzip2-libs-1.0.8-12.fc38.x86_64.rpm 945 kB/s | 42 kB 00:00 (3/136): coreutils-9.1-8.fc38.x86_64.rpm 12 MB/s | 1.1 MB 00:00 (4/136): file-libs-5.42-4.fc38.x86_64.rpm 12 MB/s | 676 kB 00:00 (5/136): coreutils-common-9.1-8.fc38.x86_64.rpm 32 MB/s | 2.0 MB 00:00 (6/136): findutils-4.9.0-2.fc38.x86_64.rpm 23 MB/s | 483 kB 00:00 (7/136): gdbm-libs-1.23-2.fc38.x86_64.rpm 6.3 MB/s | 56 kB 00:00 (8/136): gnupg2-2.3.8-1.fc38.x86_64.rpm 64 MB/s | 2.5 MB 00:00 (9/136): grep-3.8-1.fc38.x86_64.rpm 7.2 MB/s | 282 kB 00:00 (10/136): keyutils-libs-1.6.1-5.fc38.x86_64.rpm 884 kB/s | 32 kB 00:00 (11/136): libattr-2.5.1-5.fc38.x86_64.rpm 2.1 MB/s | 18 kB 00:00 (12/136): libb2-0.98.1-7.fc38.x86_64.rpm 2.9 MB/s | 25 kB 00:00 (13/136): libblkid-2.38.1-2.fc38.x86_64.rpm 11 MB/s | 107 kB 00:00 (14/136): libcap-2.48-5.fc38.x86_64.rpm 7.4 MB/s | 67 kB 00:00 (15/136): libevent-2.1.12-7.fc38.x86_64.rpm 23 MB/s | 259 kB 00:00 (16/136): libffi-3.4.2-9.fc38.x86_64.rpm 3.5 MB/s | 38 kB 00:00 (17/136): libfsverity-1.4-8.fc38.x86_64.rpm 2.3 MB/s | 20 kB 00:00 (18/136): libmount-2.38.1-2.fc38.x86_64.rpm 14 MB/s | 136 kB 00:00 (19/136): libnghttp2-1.50.0-1.fc38.x86_64.rpm 5.6 MB/s | 75 kB 00:00 (20/136): libnsl2-2.0.0-4.fc38.x86_64.rpm 3.4 MB/s | 31 kB 00:00 (21/136): libpsl-0.21.1-6.fc38.x86_64.rpm 7.0 MB/s | 64 kB 00:00 (22/136): libsigsegv-2.14-3.fc38.x86_64.rpm 3.2 MB/s | 27 kB 00:00 (23/136): libsmartcols-2.38.1-2.fc38.x86_64.rpm 7.0 MB/s | 65 kB 00:00 (24/136): libtirpc-1.3.3-0.fc38.x86_64.rpm 10 MB/s | 94 kB 00:00 (25/136): libunistring-1.0-2.fc38.x86_64.rpm 39 MB/s | 549 kB 00:00 (26/136): libuuid-2.38.1-2.fc38.x86_64.rpm 2.1 MB/s | 28 kB 00:00 (27/136): libyaml-0.2.5-8.fc38.x86_64.rpm 6.5 MB/s | 60 kB 00:00 (28/136): lua-libs-5.4.4-6.fc38.x86_64.rpm 14 MB/s | 132 kB 00:00 (29/136): lz4-libs-1.9.3-5.fc38.x86_64.rpm 7.3 MB/s | 71 kB 00:00 (30/136): mpdecimal-2.5.1-4.fc38.x86_64.rpm 10 MB/s | 102 kB 00:00 (31/136): mpfr-4.1.0-10.fc38.x86_64.rpm 27 MB/s | 331 kB 00:00 (32/136): popt-1.19-1.fc38.x86_64.rpm 4.9 MB/s | 59 kB 00:00 (33/136): python3-dateutil-2.8.2-4.fc38.noarch. 24 MB/s | 350 kB 00:00 (34/136): readline-8.2-2.fc38.x86_64.rpm 20 MB/s | 211 kB 00:00 (35/136): sed-4.8-11.fc38.x86_64.rpm 24 MB/s | 297 kB 00:00 (36/136): sqlite-libs-3.39.4-1.fc38.x86_64.rpm 39 MB/s | 659 kB 00:00 (37/136): tpm2-tss-3.2.0-3.fc38.x86_64.rpm 39 MB/s | 596 kB 00:00 (38/136): zlib-1.2.12-5.fc38.x86_64.rpm 7.1 MB/s | 94 kB 00:00 (39/136): basesystem-11-14.fc37.noarch.rpm 77 kB/s | 7.0 kB 00:00 (40/136): audit-libs-3.0.9-1.fc38.x86_64.rpm 519 kB/s | 116 kB 00:00 (41/136): crypto-policies-20221003-1.gitcb1ad32 1.4 MB/s | 86 kB 00:00 (42/136): ca-certificates-2022.2.54-5.fc37.noar 3.0 MB/s | 829 kB 00:00 (43/136): curl-7.86.0-2.fc38.x86_64.rpm 2.1 MB/s | 334 kB 00:00 (44/136): cyrus-sasl-lib-2.1.28-8.fc38.x86_64.r 10 MB/s | 792 kB 00:00 (45/136): dbus-libs-1.14.4-1.fc38.x86_64.rpm 1.3 MB/s | 156 kB 00:00 (46/136): dnf-4.14.0-1.fc38.noarch.rpm 3.0 MB/s | 480 kB 00:00 (47/136): dnf-data-4.14.0-1.fc38.noarch.rpm 812 kB/s | 43 kB 00:00 (48/136): dnf-plugins-core-4.3.1-1.fc38.noarch. 819 kB/s | 34 kB 00:00 (49/136): elfutils-default-yama-scope-0.188-3.f 373 kB/s | 15 kB 00:00 (50/136): elfutils-libelf-0.188-3.fc38.x86_64.r 4.0 MB/s | 196 kB 00:00 (51/136): elfutils-libs-0.188-3.fc38.x86_64.rpm 3.4 MB/s | 257 kB 00:00 (52/136): expat-2.4.8-2.fc37.x86_64.rpm 2.2 MB/s | 110 kB 00:00 (53/136): bash-5.2.2-2.fc38.x86_64.rpm 2.2 MB/s | 1.8 MB 00:00 (54/136): fedora-release-38-0.4.noarch.rpm 106 kB/s | 11 kB 00:00 (55/136): fedora-release-common-38-0.4.noarch.r 440 kB/s | 22 kB 00:00 (56/136): fedora-gpg-keys-38-0.3.noarch.rpm 829 kB/s | 125 kB 00:00 (57/136): fedora-release-identity-basic-38-0.4. 229 kB/s | 12 kB 00:00 (58/136): fedora-repos-rawhide-38-0.3.noarch.rp 193 kB/s | 9.7 kB 00:00 (59/136): filesystem-3.18-2.fc37.x86_64.rpm 8.5 MB/s | 1.1 MB 00:00 (60/136): fedora-repos-38-0.3.noarch.rpm 37 kB/s | 10 kB 00:00 (61/136): glib2-2.74.1-2.fc38.x86_64.rpm 23 MB/s | 2.7 MB 00:00 (62/136): glibc-common-2.36.9000-11.fc38.x86_64 6.2 MB/s | 301 kB 00:00 (63/136): glibc-minimal-langpack-2.36.9000-11.f 506 kB/s | 22 kB 00:00 (64/136): gawk-5.1.1-4.fc37.x86_64.rpm 3.1 MB/s | 1.0 MB 00:00 (65/136): glibc-2.36.9000-11.fc38.x86_64.rpm 9.9 MB/s | 2.1 MB 00:00 (66/136): gmp-6.2.1-3.fc37.x86_64.rpm 2.0 MB/s | 315 kB 00:00 (67/136): ima-evm-utils-1.4-6.fc37.x86_64.rpm 1.5 MB/s | 63 kB 00:00 (68/136): gpgme-1.17.0-4.fc37.x86_64.rpm 2.0 MB/s | 210 kB 00:00 (69/136): json-c-0.16-3.fc38.x86_64.rpm 969 kB/s | 41 kB 00:00 (70/136): libacl-2.3.1-4.fc37.x86_64.rpm 541 kB/s | 23 kB 00:00 (71/136): krb5-libs-1.19.2-11.fc37.1.x86_64.rpm 7.9 MB/s | 727 kB 00:00 (72/136): libarchive-3.6.1-2.fc37.x86_64.rpm 8.3 MB/s | 397 kB 00:00 (73/136): libassuan-2.5.5-5.fc37.x86_64.rpm 1.5 MB/s | 67 kB 00:00 (74/136): gnutls-3.7.8-9.fc38.x86_64.rpm 3.1 MB/s | 1.1 MB 00:00 (75/136): libbrotli-1.0.9-9.fc37.x86_64.rpm 6.8 MB/s | 315 kB 00:00 (76/136): libcap-ng-0.8.3-3.fc37.x86_64.rpm 783 kB/s | 33 kB 00:00 (77/136): libcom_err-1.46.5-3.fc37.x86_64.rpm 545 kB/s | 25 kB 00:00 (78/136): libcomps-0.1.18-4.fc37.x86_64.rpm 1.7 MB/s | 76 kB 00:00 (79/136): libcurl-7.86.0-2.fc38.x86_64.rpm 4.9 MB/s | 305 kB 00:00 (80/136): libgcc-12.2.1-3.fc38.x86_64.rpm 2.4 MB/s | 108 kB 00:00 (81/136): 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00:00 (96/136): libtasn1-4.18.0-3.fc37.x86_64.rpm 1.3 MB/s | 75 kB 00:00 (97/136): libverto-0.3.2-4.fc37.x86_64.rpm 505 kB/s | 21 kB 00:00 (98/136): libstdc++-12.2.1-3.fc38.x86_64.rpm 8.5 MB/s | 799 kB 00:00 (99/136): libxml2-2.10.3-2.fc38.x86_64.rpm 13 MB/s | 705 kB 00:00 (100/136): libxcrypt-4.4.30-1.fc38.x86_64.rpm 1.7 MB/s | 118 kB 00:00 (101/136): libzstd-1.5.2-3.fc37.x86_64.rpm 4.7 MB/s | 294 kB 00:00 (102/136): ncurses-base-6.3-3.20220501.fc37.noa 1.8 MB/s | 86 kB 00:00 (103/136): npth-1.6-10.fc38.x86_64.rpm 508 kB/s | 24 kB 00:00 (104/136): nettle-3.8-2.fc37.x86_64.rpm 5.5 MB/s | 414 kB 00:00 (105/136): ncurses-libs-6.3-3.20220501.fc37.x86 2.7 MB/s | 329 kB 00:00 (106/136): openldap-2.6.3-1.fc38.x86_64.rpm 4.1 MB/s | 254 kB 00:00 (107/136): p11-kit-trust-0.24.1-3.fc37.x86_64.r 1.9 MB/s | 138 kB 00:00 (108/136): p11-kit-0.24.1-3.fc37.x86_64.rpm 2.4 MB/s | 376 kB 00:00 (109/136): pcre2-10.40-1.fc37.1.x86_64.rpm 2.8 MB/s | 236 kB 00:00 (110/136): openssl-libs-3.0.5-6.fc38.x86_64.rpm 9.5 MB/s | 2.1 MB 00:00 (111/136): pcre2-syntax-10.40-1.fc37.1.noarch.r 1.4 MB/s | 142 kB 00:00 (112/136): publicsuffix-list-dafsa-20210518-5.f 847 kB/s | 58 kB 00:00 (113/136): python3-3.11.0-1.fc38.x86_64.rpm 401 kB/s | 27 kB 00:00 (114/136): python-pip-wheel-22.2.2-2.fc38.noarc 9.3 MB/s | 1.4 MB 00:00 (115/136): python3-dbus-1.3.2-1.fc38.x86_64.rpm 2.8 MB/s | 157 kB 00:00 (116/136): python3-distro-1.8.0-1.fc38.noarch.r 892 kB/s | 49 kB 00:00 (117/136): python3-dnf-4.14.0-1.fc38.noarch.rpm 9.4 MB/s | 607 kB 00:00 (118/136): python-setuptools-wheel-65.5.0-1.fc3 3.4 MB/s | 715 kB 00:00 (119/136): python3-dnf-plugins-core-4.3.1-1.fc3 3.8 MB/s | 277 kB 00:00 (120/136): python3-gpg-1.17.0-4.fc37.x86_64.rpm 4.9 MB/s | 298 kB 00:00 (121/136): python3-libcomps-0.1.18-4.fc37.x86_6 861 kB/s | 48 kB 00:00 (122/136): python3-hawkey-0.68.0-1.fc38.x86_64. 1.4 MB/s | 108 kB 00:00 (123/136): python3-libdnf-0.68.0-1.fc38.x86_64. 12 MB/s | 818 kB 00:00 (124/136): python3-rpm-4.18.0-3.fc38.x86_64.rpm 1.6 MB/s | 94 kB 00:00 (125/136): python3-six-1.16.0-8.fc37.noarch.rpm 769 kB/s | 42 kB 00:00 (126/136): rpm-build-libs-4.18.0-3.fc38.x86_64. 1.5 MB/s | 94 kB 00:00 (127/136): rpm-4.18.0-3.fc38.x86_64.rpm 5.8 MB/s | 570 kB 00:00 (128/136): rpm-libs-4.18.0-3.fc38.x86_64.rpm 5.2 MB/s | 320 kB 00:00 (129/136): rpm-sign-libs-4.18.0-3.fc38.x86_64.r 467 kB/s | 27 kB 00:00 (130/136): setup-2.14.2-1.fc38.noarch.rpm 2.6 MB/s | 151 kB 00:00 (131/136): systemd-libs-252-587.fc38.x86_64.rpm 8.2 MB/s | 631 kB 00:00 (132/136): shadow-utils-4.12.3-3.fc38.x86_64.rp 7.8 MB/s | 1.3 MB 00:00 (133/136): tzdata-2022f-1.fc38.noarch.rpm 9.4 MB/s | 715 kB 00:00 (134/136): xz-libs-5.2.7-1.fc38.x86_64.rpm 1.3 MB/s | 93 kB 00:00 (135/136): zchunk-libs-1.2.3-1.fc38.x86_64.rpm 854 kB/s | 51 kB 00:00 (136/136): python3-libs-3.11.0-1.fc38.x86_64.rp 6.3 MB/s | 9.6 MB 00:01 -------------------------------------------------------------------------------- Total 12 MB/s | 56 MB 00:04 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x5323552A: Userid : "Fedora (37) " Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-2.fc37.x86_64 1/1 Preparing : 1/1 Installing : libgcc-12.2.1-3.fc38.x86_64 1/136 Running scriptlet: libgcc-12.2.1-3.fc38.x86_64 1/136 Installing : crypto-policies-20221003-1.gitcb1ad32.fc38.noarc 2/136 Running scriptlet: crypto-policies-20221003-1.gitcb1ad32.fc38.noarc 2/136 Installing : tzdata-2022f-1.fc38.noarch 3/136 Installing : fedora-release-identity-basic-38-0.4.noarch 4/136 Installing : python-setuptools-wheel-65.5.0-1.fc38.noarch 5/136 Installing : publicsuffix-list-dafsa-20210518-5.fc37.noarch 6/136 Installing : pcre2-syntax-10.40-1.fc37.1.noarch 7/136 Installing : ncurses-base-6.3-3.20220501.fc37.noarch 8/136 Installing : libssh-config-0.10.4-2.fc38.noarch 9/136 Installing : libreport-filesystem-2.17.6-1.fc38.noarch 10/136 Installing : dnf-data-4.14.0-1.fc38.noarch 11/136 warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew Installing : fedora-gpg-keys-38-0.3.noarch 12/136 Installing : 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Installing : gpgme-1.17.0-4.fc37.x86_64 120/136 Installing : librepo-1.14.4-1.fc38.x86_64 121/136 Installing : libdnf-0.68.0-1.fc38.x86_64 122/136 Installing : python3-libdnf-0.68.0-1.fc38.x86_64 123/136 Installing : python3-hawkey-0.68.0-1.fc38.x86_64 124/136 Installing : python3-gpg-1.17.0-4.fc37.x86_64 125/136 Running scriptlet: tpm2-tss-3.2.0-3.fc38.x86_64 126/136 useradd: Warning: missing or non-executable shell '/usr/sbin/nologin' Installing : tpm2-tss-3.2.0-3.fc38.x86_64 126/136 Installing : ima-evm-utils-1.4-6.fc37.x86_64 127/136 Installing : rpm-sign-libs-4.18.0-3.fc38.x86_64 128/136 Installing : python3-rpm-4.18.0-3.fc38.x86_64 129/136 Installing : python3-dnf-4.14.0-1.fc38.noarch 130/136 Installing : python3-dnf-plugins-core-4.3.1-1.fc38.noarch 131/136 Installing : curl-7.86.0-2.fc38.x86_64 132/136 Installing : libarchive-3.6.1-2.fc37.x86_64 133/136 Running scriptlet: rpm-4.18.0-3.fc38.x86_64 134/136 Installing : rpm-4.18.0-3.fc38.x86_64 134/136 Installing : dnf-plugins-core-4.3.1-1.fc38.noarch 135/136 Installing : dnf-4.14.0-1.fc38.noarch 136/136 Running scriptlet: dnf-4.14.0-1.fc38.noarch 136/136 Running scriptlet: filesystem-3.18-2.fc37.x86_64 136/136 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 136/136 Running scriptlet: rpm-4.18.0-3.fc38.x86_64 136/136 Running scriptlet: dnf-4.14.0-1.fc38.noarch 136/136 Verifying : alternatives-1.21-1.fc38.x86_64 1/136 Verifying : bzip2-libs-1.0.8-12.fc38.x86_64 2/136 Verifying : coreutils-9.1-8.fc38.x86_64 3/136 Verifying : coreutils-common-9.1-8.fc38.x86_64 4/136 Verifying : file-libs-5.42-4.fc38.x86_64 5/136 Verifying : findutils-1:4.9.0-2.fc38.x86_64 6/136 Verifying : gdbm-libs-1:1.23-2.fc38.x86_64 7/136 Verifying : gnupg2-2.3.8-1.fc38.x86_64 8/136 Verifying : grep-3.8-1.fc38.x86_64 9/136 Verifying : keyutils-libs-1.6.1-5.fc38.x86_64 10/136 Verifying : libattr-2.5.1-5.fc38.x86_64 11/136 Verifying : libb2-0.98.1-7.fc38.x86_64 12/136 Verifying : libblkid-2.38.1-2.fc38.x86_64 13/136 Verifying : libcap-2.48-5.fc38.x86_64 14/136 Verifying : libevent-2.1.12-7.fc38.x86_64 15/136 Verifying : libffi-3.4.2-9.fc38.x86_64 16/136 Verifying : libfsverity-1.4-8.fc38.x86_64 17/136 Verifying : libmount-2.38.1-2.fc38.x86_64 18/136 Verifying : libnghttp2-1.50.0-1.fc38.x86_64 19/136 Verifying : libnsl2-2.0.0-4.fc38.x86_64 20/136 Verifying : libpsl-0.21.1-6.fc38.x86_64 21/136 Verifying : libsigsegv-2.14-3.fc38.x86_64 22/136 Verifying : libsmartcols-2.38.1-2.fc38.x86_64 23/136 Verifying : libtirpc-1.3.3-0.fc38.x86_64 24/136 Verifying : libunistring-1.0-2.fc38.x86_64 25/136 Verifying : libuuid-2.38.1-2.fc38.x86_64 26/136 Verifying : libyaml-0.2.5-8.fc38.x86_64 27/136 Verifying : lua-libs-5.4.4-6.fc38.x86_64 28/136 Verifying : lz4-libs-1.9.3-5.fc38.x86_64 29/136 Verifying : mpdecimal-2.5.1-4.fc38.x86_64 30/136 Verifying : mpfr-4.1.0-10.fc38.x86_64 31/136 Verifying : popt-1.19-1.fc38.x86_64 32/136 Verifying : python3-dateutil-1:2.8.2-4.fc38.noarch 33/136 Verifying : readline-8.2-2.fc38.x86_64 34/136 Verifying : sed-4.8-11.fc38.x86_64 35/136 Verifying : sqlite-libs-3.39.4-1.fc38.x86_64 36/136 Verifying : tpm2-tss-3.2.0-3.fc38.x86_64 37/136 Verifying : zlib-1.2.12-5.fc38.x86_64 38/136 Verifying : audit-libs-3.0.9-1.fc38.x86_64 39/136 Verifying : basesystem-11-14.fc37.noarch 40/136 Verifying : bash-5.2.2-2.fc38.x86_64 41/136 Verifying : ca-certificates-2022.2.54-5.fc37.noarch 42/136 Verifying : crypto-policies-20221003-1.gitcb1ad32.fc38.noarc 43/136 Verifying : curl-7.86.0-2.fc38.x86_64 44/136 Verifying : cyrus-sasl-lib-2.1.28-8.fc38.x86_64 45/136 Verifying : dbus-libs-1:1.14.4-1.fc38.x86_64 46/136 Verifying : dnf-4.14.0-1.fc38.noarch 47/136 Verifying : dnf-data-4.14.0-1.fc38.noarch 48/136 Verifying : dnf-plugins-core-4.3.1-1.fc38.noarch 49/136 Verifying : elfutils-default-yama-scope-0.188-3.fc38.noarch 50/136 Verifying : elfutils-libelf-0.188-3.fc38.x86_64 51/136 Verifying : elfutils-libs-0.188-3.fc38.x86_64 52/136 Verifying : expat-2.4.8-2.fc37.x86_64 53/136 Verifying : fedora-gpg-keys-38-0.3.noarch 54/136 Verifying : fedora-release-38-0.4.noarch 55/136 Verifying : fedora-release-common-38-0.4.noarch 56/136 Verifying : fedora-release-identity-basic-38-0.4.noarch 57/136 Verifying : fedora-repos-38-0.3.noarch 58/136 Verifying : fedora-repos-rawhide-38-0.3.noarch 59/136 Verifying : filesystem-3.18-2.fc37.x86_64 60/136 Verifying : gawk-5.1.1-4.fc37.x86_64 61/136 Verifying : glib2-2.74.1-2.fc38.x86_64 62/136 Verifying : glibc-2.36.9000-11.fc38.x86_64 63/136 Verifying : glibc-common-2.36.9000-11.fc38.x86_64 64/136 Verifying : glibc-minimal-langpack-2.36.9000-11.fc38.x86_64 65/136 Verifying : gmp-1:6.2.1-3.fc37.x86_64 66/136 Verifying : gnutls-3.7.8-9.fc38.x86_64 67/136 Verifying : gpgme-1.17.0-4.fc37.x86_64 68/136 Verifying : ima-evm-utils-1.4-6.fc37.x86_64 69/136 Verifying : json-c-0.16-3.fc38.x86_64 70/136 Verifying : krb5-libs-1.19.2-11.fc37.1.x86_64 71/136 Verifying : libacl-2.3.1-4.fc37.x86_64 72/136 Verifying : libarchive-3.6.1-2.fc37.x86_64 73/136 Verifying : libassuan-2.5.5-5.fc37.x86_64 74/136 Verifying : libbrotli-1.0.9-9.fc37.x86_64 75/136 Verifying : libcap-ng-0.8.3-3.fc37.x86_64 76/136 Verifying : libcom_err-1.46.5-3.fc37.x86_64 77/136 Verifying : libcomps-0.1.18-4.fc37.x86_64 78/136 Verifying : libcurl-7.86.0-2.fc38.x86_64 79/136 Verifying : libdnf-0.68.0-1.fc38.x86_64 80/136 Verifying : libgcc-12.2.1-3.fc38.x86_64 81/136 Verifying : libgcrypt-1.10.1-4.fc37.x86_64 82/136 Verifying : libgomp-12.2.1-3.fc38.x86_64 83/136 Verifying : libgpg-error-1.46-1.fc38.x86_64 84/136 Verifying : libidn2-2.3.4-1.fc38.x86_64 85/136 Verifying : libksba-1.6.2-1.fc38.x86_64 86/136 Verifying : libmodulemd-2.14.0-4.fc37.x86_64 87/136 Verifying : librepo-1.14.4-1.fc38.x86_64 88/136 Verifying : libreport-filesystem-2.17.6-1.fc38.noarch 89/136 Verifying : libselinux-3.4-5.fc37.x86_64 90/136 Verifying : libsemanage-3.4-5.fc37.x86_64 91/136 Verifying : libsepol-3.4-3.fc37.x86_64 92/136 Verifying : libsolv-0.7.22-3.fc37.x86_64 93/136 Verifying : libssh-0.10.4-2.fc38.x86_64 94/136 Verifying : libssh-config-0.10.4-2.fc38.noarch 95/136 Verifying : libstdc++-12.2.1-3.fc38.x86_64 96/136 Verifying : libtasn1-4.18.0-3.fc37.x86_64 97/136 Verifying : libverto-0.3.2-4.fc37.x86_64 98/136 Verifying : libxcrypt-4.4.30-1.fc38.x86_64 99/136 Verifying : libxml2-2.10.3-2.fc38.x86_64 100/136 Verifying : libzstd-1.5.2-3.fc37.x86_64 101/136 Verifying : ncurses-base-6.3-3.20220501.fc37.noarch 102/136 Verifying : ncurses-libs-6.3-3.20220501.fc37.x86_64 103/136 Verifying : nettle-3.8-2.fc37.x86_64 104/136 Verifying : npth-1.6-10.fc38.x86_64 105/136 Verifying : openldap-2.6.3-1.fc38.x86_64 106/136 Verifying : openssl-libs-1:3.0.5-6.fc38.x86_64 107/136 Verifying : p11-kit-0.24.1-3.fc37.x86_64 108/136 Verifying : p11-kit-trust-0.24.1-3.fc37.x86_64 109/136 Verifying : pcre2-10.40-1.fc37.1.x86_64 110/136 Verifying : pcre2-syntax-10.40-1.fc37.1.noarch 111/136 Verifying : publicsuffix-list-dafsa-20210518-5.fc37.noarch 112/136 Verifying : python-pip-wheel-22.2.2-2.fc38.noarch 113/136 Verifying : python-setuptools-wheel-65.5.0-1.fc38.noarch 114/136 Verifying : python3-3.11.0-1.fc38.x86_64 115/136 Verifying : python3-dbus-1.3.2-1.fc38.x86_64 116/136 Verifying : python3-distro-1.8.0-1.fc38.noarch 117/136 Verifying : python3-dnf-4.14.0-1.fc38.noarch 118/136 Verifying : python3-dnf-plugins-core-4.3.1-1.fc38.noarch 119/136 Verifying : python3-gpg-1.17.0-4.fc37.x86_64 120/136 Verifying : python3-hawkey-0.68.0-1.fc38.x86_64 121/136 Verifying : python3-libcomps-0.1.18-4.fc37.x86_64 122/136 Verifying : python3-libdnf-0.68.0-1.fc38.x86_64 123/136 Verifying : python3-libs-3.11.0-1.fc38.x86_64 124/136 Verifying : python3-rpm-4.18.0-3.fc38.x86_64 125/136 Verifying : python3-six-1.16.0-8.fc37.noarch 126/136 Verifying : rpm-4.18.0-3.fc38.x86_64 127/136 Verifying : rpm-build-libs-4.18.0-3.fc38.x86_64 128/136 Verifying : rpm-libs-4.18.0-3.fc38.x86_64 129/136 Verifying : rpm-sign-libs-4.18.0-3.fc38.x86_64 130/136 Verifying : setup-2.14.2-1.fc38.noarch 131/136 Verifying : shadow-utils-2:4.12.3-3.fc38.x86_64 132/136 Verifying : systemd-libs-252-587.fc38.x86_64 133/136 Verifying : tzdata-2022f-1.fc38.noarch 134/136 Verifying : xz-libs-5.2.7-1.fc38.x86_64 135/136 Verifying : zchunk-libs-1.2.3-1.fc38.x86_64 136/136 Installed products updated. Installed: alternatives-1.21-1.fc38.x86_64 audit-libs-3.0.9-1.fc38.x86_64 basesystem-11-14.fc37.noarch bash-5.2.2-2.fc38.x86_64 bzip2-libs-1.0.8-12.fc38.x86_64 ca-certificates-2022.2.54-5.fc37.noarch coreutils-9.1-8.fc38.x86_64 coreutils-common-9.1-8.fc38.x86_64 crypto-policies-20221003-1.gitcb1ad32.fc38.noarch curl-7.86.0-2.fc38.x86_64 cyrus-sasl-lib-2.1.28-8.fc38.x86_64 dbus-libs-1:1.14.4-1.fc38.x86_64 dnf-4.14.0-1.fc38.noarch dnf-data-4.14.0-1.fc38.noarch dnf-plugins-core-4.3.1-1.fc38.noarch elfutils-default-yama-scope-0.188-3.fc38.noarch elfutils-libelf-0.188-3.fc38.x86_64 elfutils-libs-0.188-3.fc38.x86_64 expat-2.4.8-2.fc37.x86_64 fedora-gpg-keys-38-0.3.noarch fedora-release-38-0.4.noarch fedora-release-common-38-0.4.noarch fedora-release-identity-basic-38-0.4.noarch fedora-repos-38-0.3.noarch fedora-repos-rawhide-38-0.3.noarch file-libs-5.42-4.fc38.x86_64 filesystem-3.18-2.fc37.x86_64 findutils-1:4.9.0-2.fc38.x86_64 gawk-5.1.1-4.fc37.x86_64 gdbm-libs-1:1.23-2.fc38.x86_64 glib2-2.74.1-2.fc38.x86_64 glibc-2.36.9000-11.fc38.x86_64 glibc-common-2.36.9000-11.fc38.x86_64 glibc-minimal-langpack-2.36.9000-11.fc38.x86_64 gmp-1:6.2.1-3.fc37.x86_64 gnupg2-2.3.8-1.fc38.x86_64 gnutls-3.7.8-9.fc38.x86_64 gpgme-1.17.0-4.fc37.x86_64 grep-3.8-1.fc38.x86_64 ima-evm-utils-1.4-6.fc37.x86_64 json-c-0.16-3.fc38.x86_64 keyutils-libs-1.6.1-5.fc38.x86_64 krb5-libs-1.19.2-11.fc37.1.x86_64 libacl-2.3.1-4.fc37.x86_64 libarchive-3.6.1-2.fc37.x86_64 libassuan-2.5.5-5.fc37.x86_64 libattr-2.5.1-5.fc38.x86_64 libb2-0.98.1-7.fc38.x86_64 libblkid-2.38.1-2.fc38.x86_64 libbrotli-1.0.9-9.fc37.x86_64 libcap-2.48-5.fc38.x86_64 libcap-ng-0.8.3-3.fc37.x86_64 libcom_err-1.46.5-3.fc37.x86_64 libcomps-0.1.18-4.fc37.x86_64 libcurl-7.86.0-2.fc38.x86_64 libdnf-0.68.0-1.fc38.x86_64 libevent-2.1.12-7.fc38.x86_64 libffi-3.4.2-9.fc38.x86_64 libfsverity-1.4-8.fc38.x86_64 libgcc-12.2.1-3.fc38.x86_64 libgcrypt-1.10.1-4.fc37.x86_64 libgomp-12.2.1-3.fc38.x86_64 libgpg-error-1.46-1.fc38.x86_64 libidn2-2.3.4-1.fc38.x86_64 libksba-1.6.2-1.fc38.x86_64 libmodulemd-2.14.0-4.fc37.x86_64 libmount-2.38.1-2.fc38.x86_64 libnghttp2-1.50.0-1.fc38.x86_64 libnsl2-2.0.0-4.fc38.x86_64 libpsl-0.21.1-6.fc38.x86_64 librepo-1.14.4-1.fc38.x86_64 libreport-filesystem-2.17.6-1.fc38.noarch libselinux-3.4-5.fc37.x86_64 libsemanage-3.4-5.fc37.x86_64 libsepol-3.4-3.fc37.x86_64 libsigsegv-2.14-3.fc38.x86_64 libsmartcols-2.38.1-2.fc38.x86_64 libsolv-0.7.22-3.fc37.x86_64 libssh-0.10.4-2.fc38.x86_64 libssh-config-0.10.4-2.fc38.noarch libstdc++-12.2.1-3.fc38.x86_64 libtasn1-4.18.0-3.fc37.x86_64 libtirpc-1.3.3-0.fc38.x86_64 libunistring-1.0-2.fc38.x86_64 libuuid-2.38.1-2.fc38.x86_64 libverto-0.3.2-4.fc37.x86_64 libxcrypt-4.4.30-1.fc38.x86_64 libxml2-2.10.3-2.fc38.x86_64 libyaml-0.2.5-8.fc38.x86_64 libzstd-1.5.2-3.fc37.x86_64 lua-libs-5.4.4-6.fc38.x86_64 lz4-libs-1.9.3-5.fc38.x86_64 mpdecimal-2.5.1-4.fc38.x86_64 mpfr-4.1.0-10.fc38.x86_64 ncurses-base-6.3-3.20220501.fc37.noarch ncurses-libs-6.3-3.20220501.fc37.x86_64 nettle-3.8-2.fc37.x86_64 npth-1.6-10.fc38.x86_64 openldap-2.6.3-1.fc38.x86_64 openssl-libs-1:3.0.5-6.fc38.x86_64 p11-kit-0.24.1-3.fc37.x86_64 p11-kit-trust-0.24.1-3.fc37.x86_64 pcre2-10.40-1.fc37.1.x86_64 pcre2-syntax-10.40-1.fc37.1.noarch popt-1.19-1.fc38.x86_64 publicsuffix-list-dafsa-20210518-5.fc37.noarch python-pip-wheel-22.2.2-2.fc38.noarch python-setuptools-wheel-65.5.0-1.fc38.noarch python3-3.11.0-1.fc38.x86_64 python3-dateutil-1:2.8.2-4.fc38.noarch python3-dbus-1.3.2-1.fc38.x86_64 python3-distro-1.8.0-1.fc38.noarch python3-dnf-4.14.0-1.fc38.noarch python3-dnf-plugins-core-4.3.1-1.fc38.noarch python3-gpg-1.17.0-4.fc37.x86_64 python3-hawkey-0.68.0-1.fc38.x86_64 python3-libcomps-0.1.18-4.fc37.x86_64 python3-libdnf-0.68.0-1.fc38.x86_64 python3-libs-3.11.0-1.fc38.x86_64 python3-rpm-4.18.0-3.fc38.x86_64 python3-six-1.16.0-8.fc37.noarch readline-8.2-2.fc38.x86_64 rpm-4.18.0-3.fc38.x86_64 rpm-build-libs-4.18.0-3.fc38.x86_64 rpm-libs-4.18.0-3.fc38.x86_64 rpm-sign-libs-4.18.0-3.fc38.x86_64 sed-4.8-11.fc38.x86_64 setup-2.14.2-1.fc38.noarch shadow-utils-2:4.12.3-3.fc38.x86_64 sqlite-libs-3.39.4-1.fc38.x86_64 systemd-libs-252-587.fc38.x86_64 tpm2-tss-3.2.0-3.fc38.x86_64 tzdata-2022f-1.fc38.noarch xz-libs-5.2.7-1.fc38.x86_64 zchunk-libs-1.2.3-1.fc38.x86_64 zlib-1.2.12-5.fc38.x86_64 Complete! Finish(bootstrap): dnf install Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1667986838.110086/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.3 INFO: Mock Version: 3.3 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 54 kB/s | 3.0 kB 00:00 Copr repository 50 MB/s | 21 MB 00:00 fedora 357 kB/s | 20 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.2-2.fc38 fedora 1.8 M bzip2 x86_64 1.0.8-12.fc38 copr_base 53 k coreutils x86_64 9.1-8.fc38 copr_base 1.1 M cpio x86_64 2.13-13.fc38 copr_base 270 k diffutils x86_64 3.8-3.fc37 fedora 378 k fedora-release-common noarch 38-0.4 fedora 22 k findutils x86_64 1:4.9.0-2.fc38 copr_base 483 k gawk x86_64 5.1.1-4.fc37 fedora 1.0 M glibc-minimal-langpack x86_64 2.36.9000-11.fc38 fedora 22 k grep x86_64 3.8-1.fc38 copr_base 282 k gzip x86_64 1.12-2.fc38 copr_base 159 k info x86_64 6.8-4.fc38 copr_base 225 k patch x86_64 2.7.6-17.fc38 copr_base 124 k redhat-rpm-config noarch 233-1.fc38 fedora 81 k rpm-build x86_64 4.18.0-3.fc38 fedora 77 k sed x86_64 4.8-11.fc38 copr_base 297 k shadow-utils x86_64 2:4.12.3-3.fc38 fedora 1.3 M tar x86_64 2:1.34-5.fc38 fedora 885 k unzip x86_64 6.0-58.fc38 copr_base 183 k util-linux x86_64 2.38.1-2.fc38 copr_base 2.3 M which x86_64 2.21-36.fc38 fedora 41 k xz x86_64 5.2.7-1.fc38 fedora 304 k Installing dependencies: alternatives x86_64 1.21-1.fc38 copr_base 38 k ansible-srpm-macros noarch 1-8.1.fc38 fedora 8.6 k audit-libs x86_64 3.0.9-1.fc38 fedora 116 k authselect x86_64 1.4.0-3.fc37 fedora 144 k authselect-libs x86_64 1.4.0-3.fc37 fedora 248 k basesystem noarch 11-14.fc37 fedora 7.0 k binutils x86_64 2.39-3.fc38 fedora 5.4 M binutils-gold x86_64 2.39-3.fc38 fedora 778 k bzip2-libs x86_64 1.0.8-12.fc38 copr_base 42 k ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k coreutils-common x86_64 9.1-8.fc38 copr_base 2.0 M cracklib x86_64 2.9.7-30.fc38 copr_base 81 k crypto-policies noarch 20221003-1.gitcb1ad32.fc38 fedora 86 k curl x86_64 7.86.0-2.fc38 fedora 334 k cyrus-sasl-lib x86_64 2.1.28-8.fc38 fedora 792 k debugedit x86_64 5.0-5.fc38 copr_base 77 k dwz x86_64 0.15-1.fc38 fedora 136 k ed x86_64 1.18-2.fc38 copr_base 79 k efi-srpm-macros noarch 5-6.fc37 fedora 22 k elfutils x86_64 0.188-3.fc38 fedora 529 k elfutils-debuginfod-client x86_64 0.188-3.fc38 fedora 40 k elfutils-default-yama-scope noarch 0.188-3.fc38 fedora 15 k elfutils-libelf x86_64 0.188-3.fc38 fedora 196 k elfutils-libs x86_64 0.188-3.fc38 fedora 257 k fedora-gpg-keys noarch 38-0.3 fedora 125 k fedora-release noarch 38-0.4 fedora 11 k fedora-release-identity-basic noarch 38-0.4 fedora 12 k fedora-repos noarch 38-0.3 fedora 10 k fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k file x86_64 5.42-4.fc38 copr_base 49 k file-libs x86_64 5.42-4.fc38 copr_base 676 k filesystem x86_64 3.18-2.fc37 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-9.fc38 fedora 26 k fpc-srpm-macros noarch 1.3-6.fc37 fedora 7.7 k gdb-minimal x86_64 12.1-9.fc38 fedora 3.7 M gdbm-libs x86_64 1:1.23-2.fc38 copr_base 56 k ghc-srpm-macros noarch 1.5.0-7.fc37 fedora 7.8 k glibc x86_64 2.36.9000-11.fc38 fedora 2.1 M glibc-common x86_64 2.36.9000-11.fc38 fedora 301 k glibc-gconv-extra x86_64 2.36.9000-11.fc38 fedora 1.6 M gmp x86_64 1:6.2.1-3.fc37 fedora 315 k gnat-srpm-macros noarch 4-16.fc37 fedora 8.3 k go-srpm-macros noarch 3.2.0-1.fc38 fedora 27 k jansson x86_64 2.13.1-5.fc38 copr_base 45 k kernel-srpm-macros noarch 1.0-15.fc37 fedora 9.4 k keyutils-libs x86_64 1.6.1-5.fc38 copr_base 32 k krb5-libs x86_64 1.19.2-11.fc37.1 fedora 727 k libacl x86_64 2.3.1-4.fc37 fedora 23 k libarchive x86_64 3.6.1-2.fc37 fedora 397 k libattr x86_64 2.5.1-5.fc38 copr_base 18 k libblkid x86_64 2.38.1-2.fc38 copr_base 107 k libbrotli x86_64 1.0.9-9.fc37 fedora 315 k libcap x86_64 2.48-5.fc38 copr_base 67 k libcap-ng x86_64 0.8.3-3.fc37 fedora 33 k libcom_err x86_64 1.46.5-3.fc37 fedora 25 k libcurl x86_64 7.86.0-2.fc38 fedora 305 k libdb x86_64 5.3.28-53.fc37 fedora 760 k libeconf x86_64 0.4.0-4.fc37 fedora 27 k libevent x86_64 2.1.12-7.fc38 copr_base 259 k libfdisk x86_64 2.38.1-2.fc38 copr_base 161 k libffi x86_64 3.4.2-9.fc38 copr_base 38 k libgcc x86_64 12.2.1-3.fc38 fedora 108 k libgomp x86_64 12.2.1-3.fc38 fedora 295 k libidn2 x86_64 2.3.4-1.fc38 fedora 160 k libmount x86_64 2.38.1-2.fc38 copr_base 136 k libnghttp2 x86_64 1.50.0-1.fc38 copr_base 75 k libnsl2 x86_64 2.0.0-4.fc38 copr_base 31 k libpkgconf x86_64 1.8.0-3.fc38 copr_base 36 k libpsl x86_64 0.21.1-6.fc38 copr_base 64 k libpwquality x86_64 1.4.4-11.fc38 copr_base 105 k libselinux x86_64 3.4-5.fc37 fedora 86 k libsemanage x86_64 3.4-5.fc37 fedora 120 k libsepol x86_64 3.4-3.fc37 fedora 322 k libsigsegv x86_64 2.14-3.fc38 copr_base 27 k libsmartcols x86_64 2.38.1-2.fc38 copr_base 65 k libssh x86_64 0.10.4-2.fc38 fedora 209 k libssh-config noarch 0.10.4-2.fc38 fedora 8.8 k libstdc++ x86_64 12.2.1-3.fc38 fedora 799 k libtasn1 x86_64 4.18.0-3.fc37 fedora 75 k libtirpc x86_64 1.3.3-0.fc38 copr_base 94 k libunistring x86_64 1.0-2.fc38 copr_base 549 k libutempter x86_64 1.2.1-7.fc38 copr_base 26 k libuuid x86_64 2.38.1-2.fc38 copr_base 28 k libverto x86_64 0.3.2-4.fc37 fedora 21 k libxcrypt x86_64 4.4.30-1.fc38 fedora 118 k libxml2 x86_64 2.10.3-2.fc38 fedora 705 k libzstd x86_64 1.5.2-3.fc37 fedora 294 k lua-libs x86_64 5.4.4-6.fc38 copr_base 132 k lua-srpm-macros noarch 1-7.fc37 fedora 8.8 k lz4-libs x86_64 1.9.3-5.fc38 copr_base 71 k mpfr x86_64 4.1.0-10.fc38 copr_base 331 k ncurses-base noarch 6.3-3.20220501.fc37 fedora 86 k ncurses-libs x86_64 6.3-3.20220501.fc37 fedora 329 k nim-srpm-macros noarch 3-7.fc37 fedora 8.4 k ocaml-srpm-macros noarch 7-2.fc37 fedora 13 k openblas-srpm-macros noarch 2-12.fc37 fedora 7.5 k openldap x86_64 2.6.3-1.fc38 fedora 254 k openssl-libs x86_64 1:3.0.5-6.fc38 fedora 2.1 M p11-kit x86_64 0.24.1-3.fc37 fedora 376 k p11-kit-trust x86_64 0.24.1-3.fc37 fedora 138 k package-notes-srpm-macros noarch 0.5-6.fc38 fedora 11 k pam x86_64 1.5.2-14.fc37 fedora 560 k pam-libs x86_64 1.5.2-14.fc37 fedora 58 k pcre2 x86_64 10.40-1.fc37.1 fedora 236 k pcre2-syntax noarch 10.40-1.fc37.1 fedora 142 k perl-srpm-macros noarch 1-46.fc37 fedora 8.3 k pkgconf x86_64 1.8.0-3.fc38 copr_base 42 k pkgconf-m4 noarch 1.8.0-3.fc38 copr_base 15 k pkgconf-pkg-config x86_64 1.8.0-3.fc38 copr_base 11 k popt x86_64 1.19-1.fc38 copr_base 59 k publicsuffix-list-dafsa noarch 20210518-5.fc37 fedora 58 k python-srpm-macros noarch 3.11-5.fc38 fedora 24 k qt5-srpm-macros noarch 5.15.7-1.fc38 fedora 7.9 k readline x86_64 8.2-2.fc38 copr_base 211 k rpm x86_64 4.18.0-3.fc38 fedora 570 k rpm-build-libs x86_64 4.18.0-3.fc38 fedora 94 k rpm-libs x86_64 4.18.0-3.fc38 fedora 320 k rpmautospec-rpm-macros noarch 0.3.0-1.fc37 fedora 8.8 k rust-srpm-macros noarch 23-1.fc38 fedora 9.4 k setup noarch 2.14.2-1.fc38 fedora 151 k sqlite-libs x86_64 3.39.4-1.fc38 copr_base 659 k systemd-libs x86_64 252-587.fc38 fedora 631 k tzdata noarch 2022f-1.fc38 fedora 715 k util-linux-core x86_64 2.38.1-2.fc38 copr_base 455 k xxhash-libs x86_64 0.8.1-3.fc38 copr_base 41 k xz-libs x86_64 5.2.7-1.fc38 fedora 93 k zip x86_64 3.0-33.fc38 copr_base 260 k zlib x86_64 1.2.12-5.fc38 copr_base 94 k zstd x86_64 1.5.2-3.fc37 fedora 447 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 151 Packages Total size: 51 M Installed size: 176 M Downloading Packages: [SKIPPED] alternatives-1.21-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-12.fc38.x86_64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-12.fc38.x86_64.rpm: Already downloaded [SKIPPED] coreutils-9.1-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] coreutils-common-9.1-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] cpio-2.13-13.fc38.x86_64.rpm: Already downloaded [SKIPPED] cracklib-2.9.7-30.fc38.x86_64.rpm: Already downloaded [SKIPPED] debugedit-5.0-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] ed-1.18-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] file-5.42-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] file-libs-5.42-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] findutils-4.9.0-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] grep-3.8-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] gzip-1.12-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] info-6.8-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] jansson-2.13.1-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] keyutils-libs-1.6.1-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] libattr-2.5.1-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] libblkid-2.38.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libcap-2.48-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] libevent-2.1.12-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] libfdisk-2.38.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libffi-3.4.2-9.fc38.x86_64.rpm: Already downloaded [SKIPPED] libmount-2.38.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libnghttp2-1.50.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libnsl2-2.0.0-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libpkgconf-1.8.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libpsl-0.21.1-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] libpwquality-1.4.4-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] libsigsegv-2.14-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libsmartcols-2.38.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libtirpc-1.3.3-0.fc38.x86_64.rpm: Already downloaded [SKIPPED] libunistring-1.0-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libutempter-1.2.1-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] libuuid-2.38.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] lua-libs-5.4.4-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] lz4-libs-1.9.3-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] mpfr-4.1.0-10.fc38.x86_64.rpm: Already downloaded [SKIPPED] patch-2.7.6-17.fc38.x86_64.rpm: Already downloaded [SKIPPED] pkgconf-1.8.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] pkgconf-m4-1.8.0-3.fc38.noarch.rpm: Already downloaded [SKIPPED] pkgconf-pkg-config-1.8.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] popt-1.19-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] readline-8.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] sed-4.8-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] sqlite-libs-3.39.4-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] unzip-6.0-58.fc38.x86_64.rpm: Already downloaded [SKIPPED] util-linux-2.38.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] util-linux-core-2.38.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] xxhash-libs-0.8.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] zip-3.0-33.fc38.x86_64.rpm: Already downloaded [SKIPPED] zlib-1.2.12-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-8.1.fc38.noarch.rpm: Already downloaded [SKIPPED] audit-libs-3.0.9-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] authselect-1.4.0-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.0-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] basesystem-11-14.fc37.noarch.rpm: Already downloaded [SKIPPED] bash-5.2.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] binutils-2.39-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] binutils-gold-2.39-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] ca-certificates-2022.2.54-5.fc37.noarch.rpm: Already downloaded [SKIPPED] crypto-policies-20221003-1.gitcb1ad32.fc38.noarch.rpm: Already downloaded [SKIPPED] curl-7.86.0-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] diffutils-3.8-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] dwz-0.15-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-6.fc37.noarch.rpm: Already downloaded [SKIPPED] elfutils-0.188-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.188-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.188-3.fc38.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.188-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] elfutils-libs-0.188-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-38-0.3.noarch.rpm: Already downloaded [SKIPPED] fedora-release-38-0.4.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-38-0.4.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-38-0.4.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-38-0.3.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-rawhide-38-0.3.noarch.rpm: Already downloaded [SKIPPED] filesystem-3.18-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-9.fc38.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-6.fc37.noarch.rpm: Already downloaded [SKIPPED] gawk-5.1.1-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] gdb-minimal-12.1-9.fc38.x86_64.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.5.0-7.fc37.noarch.rpm: Already downloaded [SKIPPED] glibc-2.36.9000-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] glibc-common-2.36.9000-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] glibc-gconv-extra-2.36.9000-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] glibc-minimal-langpack-2.36.9000-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] gmp-6.2.1-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] gnat-srpm-macros-4-16.fc37.noarch.rpm: Already downloaded [SKIPPED] go-srpm-macros-3.2.0-1.fc38.noarch.rpm: Already downloaded [SKIPPED] kernel-srpm-macros-1.0-15.fc37.noarch.rpm: Already downloaded [SKIPPED] krb5-libs-1.19.2-11.fc37.1.x86_64.rpm: Already downloaded [SKIPPED] libacl-2.3.1-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] libarchive-3.6.1-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] libbrotli-1.0.9-9.fc37.x86_64.rpm: Already downloaded [SKIPPED] libcap-ng-0.8.3-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] libcom_err-1.46.5-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] libcurl-7.86.0-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libdb-5.3.28-53.fc37.x86_64.rpm: Already downloaded [SKIPPED] libeconf-0.4.0-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] libgcc-12.2.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libgomp-12.2.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libidn2-2.3.4-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libselinux-3.4-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] libsemanage-3.4-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] libsepol-3.4-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] libssh-0.10.4-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libssh-config-0.10.4-2.fc38.noarch.rpm: Already downloaded [SKIPPED] libstdc++-12.2.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libtasn1-4.18.0-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] libverto-0.3.2-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] libxcrypt-4.4.30-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libxml2-2.10.3-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libzstd-1.5.2-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] lua-srpm-macros-1-7.fc37.noarch.rpm: Already downloaded [SKIPPED] ncurses-base-6.3-3.20220501.fc37.noarch.rpm: Already downloaded [SKIPPED] ncurses-libs-6.3-3.20220501.fc37.x86_64.rpm: Already downloaded [SKIPPED] nim-srpm-macros-3-7.fc37.noarch.rpm: Already downloaded [SKIPPED] ocaml-srpm-macros-7-2.fc37.noarch.rpm: Already downloaded [SKIPPED] openblas-srpm-macros-2-12.fc37.noarch.rpm: Already downloaded [SKIPPED] openldap-2.6.3-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] openssl-libs-3.0.5-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] p11-kit-0.24.1-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] p11-kit-trust-0.24.1-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] package-notes-srpm-macros-0.5-6.fc38.noarch.rpm: Already downloaded [SKIPPED] pam-1.5.2-14.fc37.x86_64.rpm: Already downloaded [SKIPPED] pam-libs-1.5.2-14.fc37.x86_64.rpm: Already downloaded [SKIPPED] pcre2-10.40-1.fc37.1.x86_64.rpm: Already downloaded [SKIPPED] pcre2-syntax-10.40-1.fc37.1.noarch.rpm: Already downloaded [SKIPPED] perl-srpm-macros-1-46.fc37.noarch.rpm: Already downloaded [SKIPPED] publicsuffix-list-dafsa-20210518-5.fc37.noarch.rpm: Already downloaded [SKIPPED] python-srpm-macros-3.11-5.fc38.noarch.rpm: Already downloaded [SKIPPED] qt5-srpm-macros-5.15.7-1.fc38.noarch.rpm: Already downloaded [SKIPPED] redhat-rpm-config-233-1.fc38.noarch.rpm: Already downloaded [SKIPPED] rpm-4.18.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] rpm-build-4.18.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] rpm-build-libs-4.18.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] rpm-libs-4.18.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] rpmautospec-rpm-macros-0.3.0-1.fc37.noarch.rpm: Already downloaded [SKIPPED] rust-srpm-macros-23-1.fc38.noarch.rpm: Already downloaded [SKIPPED] setup-2.14.2-1.fc38.noarch.rpm: Already downloaded [SKIPPED] shadow-utils-4.12.3-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] systemd-libs-252-587.fc38.x86_64.rpm: Already downloaded [SKIPPED] tar-1.34-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] tzdata-2022f-1.fc38.noarch.rpm: Already downloaded [SKIPPED] which-2.21-36.fc38.x86_64.rpm: Already downloaded [SKIPPED] xz-5.2.7-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] xz-libs-5.2.7-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] zstd-1.5.2-3.fc37.x86_64.rpm: Already downloaded fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x5323552A: Userid : "Fedora (37) " Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-2.fc37.x86_64 1/1 Preparing : 1/1 Installing : libgcc-12.2.1-3.fc38.x86_64 1/151 Running scriptlet: libgcc-12.2.1-3.fc38.x86_64 1/151 Installing : crypto-policies-20221003-1.gitcb1ad32.fc38.noarc 2/151 Running scriptlet: crypto-policies-20221003-1.gitcb1ad32.fc38.noarc 2/151 Installing : fedora-release-identity-basic-38-0.4.noarch 3/151 Installing : tzdata-2022f-1.fc38.noarch 4/151 Installing : rust-srpm-macros-23-1.fc38.noarch 5/151 Installing : qt5-srpm-macros-5.15.7-1.fc38.noarch 6/151 Installing : publicsuffix-list-dafsa-20210518-5.fc37.noarch 7/151 Installing : perl-srpm-macros-1-46.fc37.noarch 8/151 Installing : pcre2-syntax-10.40-1.fc37.1.noarch 9/151 Installing : package-notes-srpm-macros-0.5-6.fc38.noarch 10/151 Installing : openblas-srpm-macros-2-12.fc37.noarch 11/151 Installing : ocaml-srpm-macros-7-2.fc37.noarch 12/151 Installing : nim-srpm-macros-3-7.fc37.noarch 13/151 Installing : 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krb5-libs-1.19.2-11.fc37.1.x86_64 94/151 Verifying : libacl-2.3.1-4.fc37.x86_64 95/151 Verifying : libarchive-3.6.1-2.fc37.x86_64 96/151 Verifying : libbrotli-1.0.9-9.fc37.x86_64 97/151 Verifying : libcap-ng-0.8.3-3.fc37.x86_64 98/151 Verifying : libcom_err-1.46.5-3.fc37.x86_64 99/151 Verifying : libcurl-7.86.0-2.fc38.x86_64 100/151 Verifying : libdb-5.3.28-53.fc37.x86_64 101/151 Verifying : libeconf-0.4.0-4.fc37.x86_64 102/151 Verifying : libgcc-12.2.1-3.fc38.x86_64 103/151 Verifying : libgomp-12.2.1-3.fc38.x86_64 104/151 Verifying : libidn2-2.3.4-1.fc38.x86_64 105/151 Verifying : libselinux-3.4-5.fc37.x86_64 106/151 Verifying : libsemanage-3.4-5.fc37.x86_64 107/151 Verifying : libsepol-3.4-3.fc37.x86_64 108/151 Verifying : libssh-0.10.4-2.fc38.x86_64 109/151 Verifying : libssh-config-0.10.4-2.fc38.noarch 110/151 Verifying : libstdc++-12.2.1-3.fc38.x86_64 111/151 Verifying : libtasn1-4.18.0-3.fc37.x86_64 112/151 Verifying : libverto-0.3.2-4.fc37.x86_64 113/151 Verifying : libxcrypt-4.4.30-1.fc38.x86_64 114/151 Verifying : libxml2-2.10.3-2.fc38.x86_64 115/151 Verifying : libzstd-1.5.2-3.fc37.x86_64 116/151 Verifying : lua-srpm-macros-1-7.fc37.noarch 117/151 Verifying : ncurses-base-6.3-3.20220501.fc37.noarch 118/151 Verifying : ncurses-libs-6.3-3.20220501.fc37.x86_64 119/151 Verifying : nim-srpm-macros-3-7.fc37.noarch 120/151 Verifying : ocaml-srpm-macros-7-2.fc37.noarch 121/151 Verifying : openblas-srpm-macros-2-12.fc37.noarch 122/151 Verifying : openldap-2.6.3-1.fc38.x86_64 123/151 Verifying : openssl-libs-1:3.0.5-6.fc38.x86_64 124/151 Verifying : p11-kit-0.24.1-3.fc37.x86_64 125/151 Verifying : p11-kit-trust-0.24.1-3.fc37.x86_64 126/151 Verifying : package-notes-srpm-macros-0.5-6.fc38.noarch 127/151 Verifying : pam-1.5.2-14.fc37.x86_64 128/151 Verifying : pam-libs-1.5.2-14.fc37.x86_64 129/151 Verifying : pcre2-10.40-1.fc37.1.x86_64 130/151 Verifying : pcre2-syntax-10.40-1.fc37.1.noarch 131/151 Verifying : perl-srpm-macros-1-46.fc37.noarch 132/151 Verifying : publicsuffix-list-dafsa-20210518-5.fc37.noarch 133/151 Verifying : python-srpm-macros-3.11-5.fc38.noarch 134/151 Verifying : qt5-srpm-macros-5.15.7-1.fc38.noarch 135/151 Verifying : redhat-rpm-config-233-1.fc38.noarch 136/151 Verifying : rpm-4.18.0-3.fc38.x86_64 137/151 Verifying : rpm-build-4.18.0-3.fc38.x86_64 138/151 Verifying : rpm-build-libs-4.18.0-3.fc38.x86_64 139/151 Verifying : rpm-libs-4.18.0-3.fc38.x86_64 140/151 Verifying : rpmautospec-rpm-macros-0.3.0-1.fc37.noarch 141/151 Verifying : rust-srpm-macros-23-1.fc38.noarch 142/151 Verifying : setup-2.14.2-1.fc38.noarch 143/151 Verifying : shadow-utils-2:4.12.3-3.fc38.x86_64 144/151 Verifying : systemd-libs-252-587.fc38.x86_64 145/151 Verifying : tar-2:1.34-5.fc38.x86_64 146/151 Verifying : tzdata-2022f-1.fc38.noarch 147/151 Verifying : which-2.21-36.fc38.x86_64 148/151 Verifying : xz-5.2.7-1.fc38.x86_64 149/151 Verifying : xz-libs-5.2.7-1.fc38.x86_64 150/151 Verifying : zstd-1.5.2-3.fc37.x86_64 151/151 Installed: alternatives-1.21-1.fc38.x86_64 ansible-srpm-macros-1-8.1.fc38.noarch audit-libs-3.0.9-1.fc38.x86_64 authselect-1.4.0-3.fc37.x86_64 authselect-libs-1.4.0-3.fc37.x86_64 basesystem-11-14.fc37.noarch bash-5.2.2-2.fc38.x86_64 binutils-2.39-3.fc38.x86_64 binutils-gold-2.39-3.fc38.x86_64 bzip2-1.0.8-12.fc38.x86_64 bzip2-libs-1.0.8-12.fc38.x86_64 ca-certificates-2022.2.54-5.fc37.noarch coreutils-9.1-8.fc38.x86_64 coreutils-common-9.1-8.fc38.x86_64 cpio-2.13-13.fc38.x86_64 cracklib-2.9.7-30.fc38.x86_64 crypto-policies-20221003-1.gitcb1ad32.fc38.noarch curl-7.86.0-2.fc38.x86_64 cyrus-sasl-lib-2.1.28-8.fc38.x86_64 debugedit-5.0-5.fc38.x86_64 diffutils-3.8-3.fc37.x86_64 dwz-0.15-1.fc38.x86_64 ed-1.18-2.fc38.x86_64 efi-srpm-macros-5-6.fc37.noarch elfutils-0.188-3.fc38.x86_64 elfutils-debuginfod-client-0.188-3.fc38.x86_64 elfutils-default-yama-scope-0.188-3.fc38.noarch elfutils-libelf-0.188-3.fc38.x86_64 elfutils-libs-0.188-3.fc38.x86_64 fedora-gpg-keys-38-0.3.noarch fedora-release-38-0.4.noarch fedora-release-common-38-0.4.noarch fedora-release-identity-basic-38-0.4.noarch fedora-repos-38-0.3.noarch fedora-repos-rawhide-38-0.3.noarch file-5.42-4.fc38.x86_64 file-libs-5.42-4.fc38.x86_64 filesystem-3.18-2.fc37.x86_64 findutils-1:4.9.0-2.fc38.x86_64 fonts-srpm-macros-1:2.0.5-9.fc38.noarch fpc-srpm-macros-1.3-6.fc37.noarch gawk-5.1.1-4.fc37.x86_64 gdb-minimal-12.1-9.fc38.x86_64 gdbm-libs-1:1.23-2.fc38.x86_64 ghc-srpm-macros-1.5.0-7.fc37.noarch glibc-2.36.9000-11.fc38.x86_64 glibc-common-2.36.9000-11.fc38.x86_64 glibc-gconv-extra-2.36.9000-11.fc38.x86_64 glibc-minimal-langpack-2.36.9000-11.fc38.x86_64 gmp-1:6.2.1-3.fc37.x86_64 gnat-srpm-macros-4-16.fc37.noarch go-srpm-macros-3.2.0-1.fc38.noarch grep-3.8-1.fc38.x86_64 gzip-1.12-2.fc38.x86_64 info-6.8-4.fc38.x86_64 jansson-2.13.1-5.fc38.x86_64 kernel-srpm-macros-1.0-15.fc37.noarch keyutils-libs-1.6.1-5.fc38.x86_64 krb5-libs-1.19.2-11.fc37.1.x86_64 libacl-2.3.1-4.fc37.x86_64 libarchive-3.6.1-2.fc37.x86_64 libattr-2.5.1-5.fc38.x86_64 libblkid-2.38.1-2.fc38.x86_64 libbrotli-1.0.9-9.fc37.x86_64 libcap-2.48-5.fc38.x86_64 libcap-ng-0.8.3-3.fc37.x86_64 libcom_err-1.46.5-3.fc37.x86_64 libcurl-7.86.0-2.fc38.x86_64 libdb-5.3.28-53.fc37.x86_64 libeconf-0.4.0-4.fc37.x86_64 libevent-2.1.12-7.fc38.x86_64 libfdisk-2.38.1-2.fc38.x86_64 libffi-3.4.2-9.fc38.x86_64 libgcc-12.2.1-3.fc38.x86_64 libgomp-12.2.1-3.fc38.x86_64 libidn2-2.3.4-1.fc38.x86_64 libmount-2.38.1-2.fc38.x86_64 libnghttp2-1.50.0-1.fc38.x86_64 libnsl2-2.0.0-4.fc38.x86_64 libpkgconf-1.8.0-3.fc38.x86_64 libpsl-0.21.1-6.fc38.x86_64 libpwquality-1.4.4-11.fc38.x86_64 libselinux-3.4-5.fc37.x86_64 libsemanage-3.4-5.fc37.x86_64 libsepol-3.4-3.fc37.x86_64 libsigsegv-2.14-3.fc38.x86_64 libsmartcols-2.38.1-2.fc38.x86_64 libssh-0.10.4-2.fc38.x86_64 libssh-config-0.10.4-2.fc38.noarch libstdc++-12.2.1-3.fc38.x86_64 libtasn1-4.18.0-3.fc37.x86_64 libtirpc-1.3.3-0.fc38.x86_64 libunistring-1.0-2.fc38.x86_64 libutempter-1.2.1-7.fc38.x86_64 libuuid-2.38.1-2.fc38.x86_64 libverto-0.3.2-4.fc37.x86_64 libxcrypt-4.4.30-1.fc38.x86_64 libxml2-2.10.3-2.fc38.x86_64 libzstd-1.5.2-3.fc37.x86_64 lua-libs-5.4.4-6.fc38.x86_64 lua-srpm-macros-1-7.fc37.noarch lz4-libs-1.9.3-5.fc38.x86_64 mpfr-4.1.0-10.fc38.x86_64 ncurses-base-6.3-3.20220501.fc37.noarch ncurses-libs-6.3-3.20220501.fc37.x86_64 nim-srpm-macros-3-7.fc37.noarch ocaml-srpm-macros-7-2.fc37.noarch openblas-srpm-macros-2-12.fc37.noarch openldap-2.6.3-1.fc38.x86_64 openssl-libs-1:3.0.5-6.fc38.x86_64 p11-kit-0.24.1-3.fc37.x86_64 p11-kit-trust-0.24.1-3.fc37.x86_64 package-notes-srpm-macros-0.5-6.fc38.noarch pam-1.5.2-14.fc37.x86_64 pam-libs-1.5.2-14.fc37.x86_64 patch-2.7.6-17.fc38.x86_64 pcre2-10.40-1.fc37.1.x86_64 pcre2-syntax-10.40-1.fc37.1.noarch perl-srpm-macros-1-46.fc37.noarch pkgconf-1.8.0-3.fc38.x86_64 pkgconf-m4-1.8.0-3.fc38.noarch pkgconf-pkg-config-1.8.0-3.fc38.x86_64 popt-1.19-1.fc38.x86_64 publicsuffix-list-dafsa-20210518-5.fc37.noarch python-srpm-macros-3.11-5.fc38.noarch qt5-srpm-macros-5.15.7-1.fc38.noarch readline-8.2-2.fc38.x86_64 redhat-rpm-config-233-1.fc38.noarch rpm-4.18.0-3.fc38.x86_64 rpm-build-4.18.0-3.fc38.x86_64 rpm-build-libs-4.18.0-3.fc38.x86_64 rpm-libs-4.18.0-3.fc38.x86_64 rpmautospec-rpm-macros-0.3.0-1.fc37.noarch rust-srpm-macros-23-1.fc38.noarch sed-4.8-11.fc38.x86_64 setup-2.14.2-1.fc38.noarch shadow-utils-2:4.12.3-3.fc38.x86_64 sqlite-libs-3.39.4-1.fc38.x86_64 systemd-libs-252-587.fc38.x86_64 tar-2:1.34-5.fc38.x86_64 tzdata-2022f-1.fc38.noarch unzip-6.0-58.fc38.x86_64 util-linux-2.38.1-2.fc38.x86_64 util-linux-core-2.38.1-2.fc38.x86_64 which-2.21-36.fc38.x86_64 xxhash-libs-0.8.1-3.fc38.x86_64 xz-5.2.7-1.fc38.x86_64 xz-libs-5.2.7-1.fc38.x86_64 zip-3.0-33.fc38.x86_64 zlib-1.2.12-5.fc38.x86_64 zstd-1.5.2-3.fc37.x86_64 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: libbrotli-1.0.9-9.fc37.x86_64 popt-1.19-1.fc38.x86_64 python-srpm-macros-3.11-5.fc38.noarch filesystem-3.18-2.fc37.x86_64 libxml2-2.10.3-2.fc38.x86_64 rpmautospec-rpm-macros-0.3.0-1.fc37.noarch rpm-libs-4.18.0-3.fc38.x86_64 gdb-minimal-12.1-9.fc38.x86_64 binutils-gold-2.39-3.fc38.x86_64 fedora-gpg-keys-38-0.3.noarch grep-3.8-1.fc38.x86_64 zstd-1.5.2-3.fc37.x86_64 diffutils-3.8-3.fc37.x86_64 glibc-gconv-extra-2.36.9000-11.fc38.x86_64 jansson-2.13.1-5.fc38.x86_64 libcap-ng-0.8.3-3.fc37.x86_64 util-linux-core-2.38.1-2.fc38.x86_64 pkgconf-1.8.0-3.fc38.x86_64 readline-8.2-2.fc38.x86_64 libsigsegv-2.14-3.fc38.x86_64 libidn2-2.3.4-1.fc38.x86_64 libssh-0.10.4-2.fc38.x86_64 gmp-6.2.1-3.fc37.x86_64 libsemanage-3.4-5.fc37.x86_64 bzip2-1.0.8-12.fc38.x86_64 pam-1.5.2-14.fc37.x86_64 openblas-srpm-macros-2-12.fc37.noarch libevent-2.1.12-7.fc38.x86_64 redhat-rpm-config-233-1.fc38.noarch ca-certificates-2022.2.54-5.fc37.noarch publicsuffix-list-dafsa-20210518-5.fc37.noarch fedora-release-common-38-0.4.noarch libblkid-2.38.1-2.fc38.x86_64 package-notes-srpm-macros-0.5-6.fc38.noarch glibc-minimal-langpack-2.36.9000-11.fc38.x86_64 which-2.21-36.fc38.x86_64 libgomp-12.2.1-3.fc38.x86_64 libattr-2.5.1-5.fc38.x86_64 kernel-srpm-macros-1.0-15.fc37.noarch elfutils-default-yama-scope-0.188-3.fc38.noarch cpio-2.13-13.fc38.x86_64 curl-7.86.0-2.fc38.x86_64 pam-libs-1.5.2-14.fc37.x86_64 cracklib-2.9.7-30.fc38.x86_64 xz-libs-5.2.7-1.fc38.x86_64 ghc-srpm-macros-1.5.0-7.fc37.noarch glibc-common-2.36.9000-11.fc38.x86_64 basesystem-11-14.fc37.noarch go-srpm-macros-3.2.0-1.fc38.noarch p11-kit-0.24.1-3.fc37.x86_64 libunistring-1.0-2.fc38.x86_64 debugedit-5.0-5.fc38.x86_64 pcre2-syntax-10.40-1.fc37.1.noarch libacl-2.3.1-4.fc37.x86_64 elfutils-debuginfod-client-0.188-3.fc38.x86_64 fedora-release-38-0.4.noarch fedora-repos-38-0.3.noarch coreutils-common-9.1-8.fc38.x86_64 qt5-srpm-macros-5.15.7-1.fc38.noarch libselinux-3.4-5.fc37.x86_64 tar-1.34-5.fc38.x86_64 gawk-5.1.1-4.fc37.x86_64 systemd-libs-252-587.fc38.x86_64 ncurses-libs-6.3-3.20220501.fc37.x86_64 ocaml-srpm-macros-7-2.fc37.noarch p11-kit-trust-0.24.1-3.fc37.x86_64 xxhash-libs-0.8.1-3.fc38.x86_64 lz4-libs-1.9.3-5.fc38.x86_64 sed-4.8-11.fc38.x86_64 gzip-1.12-2.fc38.x86_64 libcom_err-1.46.5-3.fc37.x86_64 xz-5.2.7-1.fc38.x86_64 findutils-4.9.0-2.fc38.x86_64 libutempter-1.2.1-7.fc38.x86_64 binutils-2.39-3.fc38.x86_64 glibc-2.36.9000-11.fc38.x86_64 libtirpc-1.3.3-0.fc38.x86_64 openssl-libs-3.0.5-6.fc38.x86_64 util-linux-2.38.1-2.fc38.x86_64 shadow-utils-4.12.3-3.fc38.x86_64 lua-srpm-macros-1-7.fc37.noarch ansible-srpm-macros-1-8.1.fc38.noarch libarchive-3.6.1-2.fc37.x86_64 libpsl-0.21.1-6.fc38.x86_64 libuuid-2.38.1-2.fc38.x86_64 gpg-pubkey-5323552a-6112bcdc zlib-1.2.12-5.fc38.x86_64 libsepol-3.4-3.fc37.x86_64 libtasn1-4.18.0-3.fc37.x86_64 rpm-build-4.18.0-3.fc38.x86_64 unzip-6.0-58.fc38.x86_64 crypto-policies-20221003-1.gitcb1ad32.fc38.noarch cyrus-sasl-lib-2.1.28-8.fc38.x86_64 tzdata-2022f-1.fc38.noarch bash-5.2.2-2.fc38.x86_64 fedora-release-identity-basic-38-0.4.noarch pcre2-10.40-1.fc37.1.x86_64 libpkgconf-1.8.0-3.fc38.x86_64 patch-2.7.6-17.fc38.x86_64 libcurl-7.86.0-2.fc38.x86_64 openldap-2.6.3-1.fc38.x86_64 libpwquality-1.4.4-11.fc38.x86_64 file-5.42-4.fc38.x86_64 dwz-0.15-1.fc38.x86_64 rpm-4.18.0-3.fc38.x86_64 zip-3.0-33.fc38.x86_64 libdb-5.3.28-53.fc37.x86_64 keyutils-libs-1.6.1-5.fc38.x86_64 libffi-3.4.2-9.fc38.x86_64 libstdc++-12.2.1-3.fc38.x86_64 libsmartcols-2.38.1-2.fc38.x86_64 coreutils-9.1-8.fc38.x86_64 krb5-libs-1.19.2-11.fc37.1.x86_64 pkgconf-pkg-config-1.8.0-3.fc38.x86_64 libssh-config-0.10.4-2.fc38.noarch elfutils-libs-0.188-3.fc38.x86_64 libnsl2-2.0.0-4.fc38.x86_64 gpg-pubkey-eb10b464-6202d9c6 gnat-srpm-macros-4-16.fc37.noarch alternatives-1.21-1.fc38.x86_64 ncurses-base-6.3-3.20220501.fc37.noarch libxcrypt-4.4.30-1.fc38.x86_64 rust-srpm-macros-23-1.fc38.noarch libmount-2.38.1-2.fc38.x86_64 fedora-repos-rawhide-38-0.3.noarch libeconf-0.4.0-4.fc37.x86_64 setup-2.14.2-1.fc38.noarch gdbm-libs-1.23-2.fc38.x86_64 rpm-build-libs-4.18.0-3.fc38.x86_64 fonts-srpm-macros-2.0.5-9.fc38.noarch libnghttp2-1.50.0-1.fc38.x86_64 mpfr-4.1.0-10.fc38.x86_64 libzstd-1.5.2-3.fc37.x86_64 info-6.8-4.fc38.x86_64 lua-libs-5.4.4-6.fc38.x86_64 libverto-0.3.2-4.fc37.x86_64 libgcc-12.2.1-3.fc38.x86_64 perl-srpm-macros-1-46.fc37.noarch libfdisk-2.38.1-2.fc38.x86_64 nim-srpm-macros-3-7.fc37.noarch bzip2-libs-1.0.8-12.fc38.x86_64 pkgconf-m4-1.8.0-3.fc38.noarch authselect-libs-1.4.0-3.fc37.x86_64 libcap-2.48-5.fc38.x86_64 fpc-srpm-macros-1.3-6.fc37.noarch elfutils-libelf-0.188-3.fc38.x86_64 sqlite-libs-3.39.4-1.fc38.x86_64 efi-srpm-macros-5-6.fc37.noarch audit-libs-3.0.9-1.fc38.x86_64 file-libs-5.42-4.fc38.x86_64 ed-1.18-2.fc38.x86_64 authselect-1.4.0-3.fc37.x86_64 elfutils-0.188-3.fc38.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1659312000 Wrote: /builddir/build/SRPMS/hmmer-3.3.2-2.fc38.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1667986838.110086/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1667986838.110086/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1667986838.110086/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-yimzir72/hmmer/hmmer.spec) Config(child) 1 minutes 2 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=108000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/hmmer-3.3.2-2.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1667986838.110086 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.3 starting (python version = 3.10.4, NVR = mock-3.3-1.fc35)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/hmmer-3.3.2-2.fc38.src.rpm) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1667986838.110086/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1667986838.110086/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.3 INFO: Mock Version: 3.3 Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1667986838.110086/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.3 INFO: Mock Version: 3.3 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 55 kB/s | 3.0 kB 00:00 Copr repository 55 MB/s | 21 MB 00:00 fedora 437 kB/s | 20 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for hmmer-3.3.2-2.fc38.src.rpm Start: build setup for hmmer-3.3.2-2.fc38.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1659312000 Wrote: /builddir/build/SRPMS/hmmer-3.3.2-2.fc38.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 55 kB/s | 3.0 kB 00:00 fedora 431 kB/s | 20 kB 00:00 Dependencies resolved. ======================================================================================== Package Arch Version Repo Size ======================================================================================== Installing: make x86_64 1:4.4-1.fc38 copr_base 571 k perl x86_64 4:5.36.0-492.fc38 copr_base 16 k Installing dependencies: annobin-docs noarch 10.92-1.fc38 fedora 92 k annobin-plugin-gcc x86_64 10.92-1.fc38 fedora 888 k cpp x86_64 12.2.1-3.fc38 fedora 11 M expat x86_64 2.4.8-2.fc37 fedora 110 k gc x86_64 8.2.2-1.fc38 copr_base 110 k gcc x86_64 12.2.1-3.fc38 fedora 33 M gcc-c++ x86_64 12.2.1-3.fc38 fedora 13 M gcc-plugin-annobin x86_64 12.2.1-3.fc38 fedora 53 k glibc-devel x86_64 2.36.9000-11.fc38 fedora 39 k glibc-headers-x86 noarch 2.36.9000-11.fc38 fedora 516 k gnupg2 x86_64 2.3.8-1.fc38 copr_base 2.5 M gnutls x86_64 3.7.8-9.fc38 fedora 1.1 M groff-base x86_64 1.22.4-10.fc37 fedora 1.1 M guile22 x86_64 2.2.7-6.fc38 copr_base 6.4 M kernel-headers x86_64 6.1.0-0.rc4.git0.1.fc38 fedora 1.5 M libassuan x86_64 2.5.5-5.fc37 fedora 67 k libb2 x86_64 0.98.1-7.fc38 copr_base 25 k libgcrypt x86_64 1.10.1-4.fc37 fedora 512 k libgpg-error x86_64 1.46-1.fc38 fedora 227 k libksba x86_64 1.6.2-1.fc38 fedora 158 k libmpc x86_64 1.2.1-5.fc38 copr_base 61 k libstdc++-devel x86_64 12.2.1-3.fc38 fedora 2.5 M libtool-ltdl x86_64 2.4.7-2.fc37 fedora 37 k libxcrypt-devel x86_64 4.4.30-1.fc38 fedora 28 k mpdecimal x86_64 2.5.1-4.fc38 copr_base 102 k ncurses x86_64 6.3-3.20220501.fc37 fedora 409 k nettle x86_64 3.8-2.fc37 fedora 414 k npth x86_64 1.6-10.fc38 fedora 24 k perl-Algorithm-Diff noarch 1.2010-7.fc38 copr_base 48 k perl-Archive-Tar noarch 2.40-490.fc38 copr_base 72 k perl-Archive-Zip noarch 1.68-9.fc38 copr_base 106 k perl-Attribute-Handlers noarch 1.02-492.fc38 copr_base 31 k perl-AutoLoader noarch 5.74-492.fc38 copr_base 25 k perl-AutoSplit noarch 5.74-492.fc38 copr_base 25 k perl-B x86_64 1.83-492.fc38 copr_base 185 k perl-Benchmark noarch 1.23-492.fc38 copr_base 30 k perl-CPAN noarch 2.34-4.fc37 fedora 570 k perl-CPAN-Meta noarch 2.150010-489.fc38 copr_base 176 k perl-CPAN-Meta-Requirements noarch 2.140-490.fc37 fedora 31 k perl-CPAN-Meta-YAML noarch 0.018-490.fc38 copr_base 27 k perl-Carp noarch 1.52-489.fc38 copr_base 29 k perl-Class-Struct noarch 0.66-492.fc38 copr_base 26 k perl-Compress-Bzip2 x86_64 2.28-10.fc38 copr_base 68 k perl-Compress-Raw-Bzip2 x86_64 2.201-2.fc38 copr_base 35 k perl-Compress-Raw-Lzma x86_64 2.201-4.fc38 fedora 49 k perl-Compress-Raw-Zlib x86_64 2.202-3.fc38 copr_base 64 k perl-Config-Extensions noarch 0.03-492.fc38 copr_base 16 k perl-Config-Perl-V noarch 0.34-1.fc38 copr_base 22 k perl-DBM_Filter noarch 0.06-492.fc38 copr_base 35 k perl-DB_File x86_64 1.858-4.fc38 copr_base 82 k perl-Data-Dumper x86_64 2.184-490.fc38 copr_base 57 k perl-Data-OptList noarch 0.112-5.fc38 copr_base 27 k perl-Data-Section noarch 0.200007-17.fc38 copr_base 25 k perl-Devel-PPPort x86_64 3.68-490.fc38 copr_base 219 k perl-Devel-Peek x86_64 1.32-492.fc38 copr_base 36 k perl-Devel-SelfStubber noarch 1.06-492.fc38 copr_base 18 k perl-Devel-Size x86_64 0.83-13.fc38 copr_base 31 k perl-Digest noarch 1.20-489.fc38 copr_base 26 k perl-Digest-MD5 x86_64 2.58-489.fc38 copr_base 36 k perl-Digest-SHA x86_64 1:6.03-1.fc38 copr_base 63 k perl-Digest-SHA1 x86_64 2.13-37.fc38 copr_base 53 k perl-DirHandle noarch 1.05-492.fc38 copr_base 16 k perl-Dumpvalue noarch 2.27-492.fc38 copr_base 22 k perl-DynaLoader x86_64 1.52-492.fc38 copr_base 29 k perl-Encode x86_64 4:3.19-492.fc38 copr_base 1.7 M perl-Encode-devel x86_64 4:3.19-492.fc38 copr_base 42 k perl-English noarch 1.11-492.fc38 copr_base 17 k perl-Env noarch 1.05-489.fc38 copr_base 20 k perl-Errno x86_64 1.36-492.fc38 copr_base 18 k perl-Exporter noarch 5.77-489.fc38 copr_base 32 k perl-ExtUtils-CBuilder noarch 1:0.280236-489.fc38 copr_base 47 k perl-ExtUtils-Command noarch 2:7.64-490.fc38 copr_base 15 k perl-ExtUtils-Constant noarch 0.25-492.fc38 copr_base 50 k perl-ExtUtils-Embed noarch 1.35-492.fc38 copr_base 21 k perl-ExtUtils-Install noarch 2.20-489.fc38 copr_base 45 k perl-ExtUtils-MM-Utils noarch 2:7.64-490.fc38 copr_base 12 k perl-ExtUtils-MakeMaker noarch 2:7.64-490.fc38 copr_base 290 k perl-ExtUtils-Manifest noarch 1:1.73-489.fc38 copr_base 35 k perl-ExtUtils-Miniperl noarch 1.11-492.fc38 copr_base 18 k perl-ExtUtils-ParseXS noarch 1:3.45-489.fc38 copr_base 183 k perl-Fcntl x86_64 1.15-492.fc38 copr_base 24 k perl-File-Basename noarch 2.85-492.fc38 copr_base 21 k perl-File-Compare noarch 1.100.700-492.fc38 copr_base 17 k perl-File-Copy noarch 2.39-492.fc38 copr_base 23 k perl-File-DosGlob x86_64 1.12-492.fc38 copr_base 23 k perl-File-Fetch noarch 1.04-489.fc38 copr_base 31 k perl-File-Find noarch 1.40-492.fc38 copr_base 29 k perl-File-HomeDir noarch 1.006-7.fc38 copr_base 58 k perl-File-Path noarch 2.18-489.fc38 copr_base 36 k perl-File-Temp noarch 1:0.231.100-489.fc38 copr_base 60 k perl-File-Which noarch 1.27-6.fc38 copr_base 22 k perl-File-stat noarch 1.12-492.fc38 copr_base 21 k perl-FileCache noarch 1.10-492.fc38 copr_base 18 k perl-FileHandle noarch 2.03-492.fc38 copr_base 19 k perl-Filter x86_64 2:1.64-1.fc38 fedora 89 k perl-Filter-Simple noarch 0.96-489.fc38 copr_base 27 k perl-FindBin noarch 1.53-492.fc38 copr_base 17 k perl-GDBM_File x86_64 1:1.23-492.fc38 copr_base 46 k perl-Getopt-Long noarch 1:2.52-489.fc38 copr_base 60 k perl-Getopt-Std noarch 1.13-492.fc38 copr_base 19 k perl-HTTP-Tiny noarch 0.082-1.fc38 copr_base 56 k perl-Hash-Util x86_64 0.28-492.fc38 copr_base 37 k perl-Hash-Util-FieldHash x86_64 1.26-492.fc38 copr_base 42 k perl-I18N-Collate noarch 1.02-492.fc38 copr_base 18 k perl-I18N-LangTags noarch 0.45-492.fc38 copr_base 58 k perl-I18N-Langinfo x86_64 0.21-492.fc38 copr_base 26 k perl-IO x86_64 1.50-492.fc38 copr_base 90 k perl-IO-Compress noarch 2.201-3.fc38 copr_base 263 k perl-IO-Compress-Lzma noarch 2.201-2.fc37 fedora 79 k perl-IO-Socket-IP noarch 0.41-490.fc38 copr_base 42 k perl-IO-Zlib noarch 1:1.11-489.fc38 copr_base 20 k perl-IPC-Cmd noarch 2:1.04-490.fc38 copr_base 40 k perl-IPC-Open3 noarch 1.22-492.fc38 copr_base 26 k perl-IPC-SysV x86_64 2.09-490.fc38 copr_base 42 k perl-IPC-System-Simple noarch 1.30-9.fc38 copr_base 39 k perl-Importer noarch 0.026-7.fc38 copr_base 40 k perl-JSON-PP noarch 1:4.12-1.fc38 copr_base 68 k perl-Locale-Maketext noarch 1.32-1.fc38 copr_base 95 k perl-Locale-Maketext-Simple noarch 1:0.21-492.fc38 copr_base 21 k perl-MIME-Base64 x86_64 3.16-489.fc38 copr_base 31 k perl-MRO-Compat noarch 0.15-4.fc38 copr_base 26 k perl-Math-BigInt noarch 1:1.9998.37-2.fc38 copr_base 202 k perl-Math-BigInt-FastCalc x86_64 0.501.300-3.fc38 copr_base 28 k perl-Math-BigRat noarch 0.2624-2.fc38 copr_base 42 k perl-Math-Complex noarch 1.59-492.fc38 copr_base 50 k perl-Memoize noarch 1.03-492.fc38 copr_base 60 k perl-Module-Build noarch 2:0.42.31-15.fc37 fedora 264 k perl-Module-CoreList noarch 1:5.20221020-1.fc38 copr_base 85 k perl-Module-CoreList-tools noarch 1:5.20221020-1.fc38 copr_base 19 k perl-Module-Load noarch 1:0.36-489.fc38 copr_base 18 k perl-Module-Load-Conditional noarch 0.74-489.fc38 copr_base 23 k perl-Module-Loaded noarch 1:0.08-492.fc38 copr_base 17 k perl-Module-Metadata noarch 1.000037-489.fc38 copr_base 36 k perl-Module-Signature noarch 0.88-4.fc37 fedora 83 k perl-NDBM_File x86_64 1.15-492.fc38 copr_base 26 k perl-NEXT noarch 0.69-492.fc38 copr_base 24 k perl-Net noarch 1.03-492.fc38 copr_base 29 k perl-Net-Ping noarch 2.75-2.fc38 fedora 50 k perl-ODBM_File x86_64 1.17-492.fc38 copr_base 26 k perl-Object-HashBase noarch 0.009-10.fc38 copr_base 26 k perl-Opcode x86_64 1.57-492.fc38 copr_base 40 k perl-POSIX x86_64 2.03-492.fc38 copr_base 101 k perl-Package-Generator noarch 1.106-26.fc38 copr_base 24 k perl-Params-Check noarch 1:0.38-489.fc38 copr_base 22 k perl-Params-Util x86_64 1.102-8.fc38 copr_base 34 k perl-PathTools x86_64 3.84-489.fc38 copr_base 85 k perl-Perl-OSType noarch 1.010-490.fc37 fedora 23 k perl-PerlIO-via-QuotedPrint noarch 0.10-3.fc38 copr_base 22 k perl-Pod-Checker noarch 4:1.75-3.fc38 copr_base 32 k perl-Pod-Escapes noarch 1:1.07-489.fc38 copr_base 20 k perl-Pod-Functions noarch 1.14-492.fc38 copr_base 17 k perl-Pod-Html noarch 1.33-492.fc38 copr_base 35 k perl-Pod-Perldoc noarch 3.28.01-490.fc38 copr_base 84 k perl-Pod-Simple noarch 1:3.43-490.fc38 copr_base 216 k perl-Pod-Usage noarch 4:2.03-3.fc38 copr_base 41 k perl-Safe noarch 2.43-492.fc38 copr_base 28 k perl-Scalar-List-Utils x86_64 5:1.63-489.fc38 copr_base 73 k perl-Search-Dict noarch 1.07-492.fc38 copr_base 16 k perl-SelectSaver noarch 1.02-492.fc38 copr_base 15 k perl-SelfLoader noarch 1.26-492.fc38 copr_base 25 k perl-Socket x86_64 4:2.036-1.fc38 copr_base 56 k perl-Software-License noarch 0.104002-2.fc38 copr_base 133 k perl-Storable x86_64 1:3.26-489.fc38 copr_base 97 k perl-Sub-Exporter noarch 0.988-5.fc38 copr_base 72 k perl-Sub-Install noarch 0.928-33.fc38 copr_base 23 k perl-Symbol noarch 1.09-492.fc38 copr_base 18 k perl-Sys-Hostname x86_64 1.24-492.fc38 copr_base 21 k perl-Sys-Syslog x86_64 0.36-490.fc38 copr_base 47 k perl-Term-ANSIColor noarch 5.01-490.fc38 copr_base 48 k perl-Term-Cap noarch 1.17-489.fc37 fedora 22 k perl-Term-Complete noarch 1.403-492.fc38 copr_base 16 k perl-Term-ReadLine noarch 1.17-492.fc38 copr_base 22 k perl-Term-Table noarch 0.016-4.fc38 copr_base 35 k perl-Test noarch 1.31-492.fc38 copr_base 32 k perl-Test-Harness noarch 1:3.44-490.fc38 copr_base 269 k perl-Test-Simple noarch 3:1.302191-2.fc38 copr_base 525 k perl-Text-Abbrev noarch 1.02-492.fc38 copr_base 16 k perl-Text-Balanced noarch 2.06-2.fc38 copr_base 50 k perl-Text-Diff noarch 1.45-16.fc38 copr_base 41 k perl-Text-Glob noarch 0.11-18.fc38 copr_base 14 k perl-Text-ParseWords noarch 3.31-489.fc38 copr_base 17 k perl-Text-Tabs+Wrap noarch 2021.0814-489.fc38 copr_base 23 k perl-Text-Template noarch 1.61-1.fc38 copr_base 60 k perl-Thread noarch 3.05-492.fc38 copr_base 21 k perl-Thread-Queue noarch 3.14-489.fc38 copr_base 22 k perl-Thread-Semaphore noarch 2.13-492.fc38 copr_base 19 k perl-Tie noarch 4.6-492.fc38 copr_base 35 k perl-Tie-File noarch 1.06-492.fc38 copr_base 47 k perl-Tie-Memoize noarch 1.1-492.fc38 copr_base 18 k perl-Tie-RefHash noarch 1.40-489.fc38 copr_base 23 k perl-Time noarch 1.03-492.fc38 copr_base 22 k perl-Time-HiRes x86_64 4:1.9770-489.fc38 copr_base 58 k perl-Time-Local noarch 2:1.300-489.fc38 copr_base 34 k perl-Time-Piece x86_64 1.3401-492.fc38 copr_base 45 k perl-URI noarch 5.17-1.fc38 fedora 123 k perl-Unicode-Collate x86_64 1.31-489.fc38 copr_base 734 k perl-Unicode-Normalize x86_64 1.31-489.fc38 copr_base 95 k perl-Unicode-UCD noarch 0.78-492.fc38 copr_base 82 k perl-User-pwent noarch 1.03-492.fc38 copr_base 24 k perl-autodie noarch 2.34-490.fc38 copr_base 95 k perl-autouse noarch 1.11-492.fc38 copr_base 17 k perl-base noarch 2.27-492.fc38 copr_base 20 k perl-bignum noarch 0.66-5.fc38 copr_base 51 k perl-blib noarch 1.07-492.fc38 copr_base 16 k perl-constant noarch 1.33-490.fc38 copr_base 23 k perl-debugger noarch 1.60-492.fc38 copr_base 138 k perl-deprecate noarch 0.04-492.fc38 copr_base 18 k perl-devel x86_64 4:5.36.0-492.fc38 copr_base 699 k perl-diagnostics noarch 1.39-492.fc38 copr_base 214 k perl-doc noarch 5.36.0-492.fc38 copr_base 4.7 M perl-encoding x86_64 4:3.00-492.fc38 copr_base 64 k perl-encoding-warnings noarch 0.13-492.fc38 copr_base 20 k perl-experimental noarch 0.029-1.fc38 copr_base 23 k perl-fields noarch 2.27-492.fc38 copr_base 20 k perl-filetest noarch 1.03-492.fc38 copr_base 18 k perl-if noarch 0.61.000-492.fc38 copr_base 17 k perl-inc-latest noarch 2:0.500-23.fc38 copr_base 24 k perl-interpreter x86_64 4:5.36.0-492.fc38 copr_base 76 k perl-less noarch 0.03-492.fc38 copr_base 17 k perl-lib x86_64 0.65-492.fc38 copr_base 18 k perl-libnet noarch 3.14-490.fc38 copr_base 127 k perl-libnetcfg noarch 4:5.36.0-492.fc38 copr_base 20 k perl-libs x86_64 4:5.36.0-492.fc38 copr_base 2.1 M perl-local-lib noarch 2.000029-3.fc38 copr_base 68 k perl-locale noarch 1.10-492.fc38 copr_base 17 k perl-macros noarch 4:5.36.0-492.fc38 copr_base 15 k perl-meta-notation noarch 5.36.0-492.fc38 copr_base 13 k perl-mro x86_64 1.26-492.fc38 copr_base 32 k perl-open noarch 1.13-492.fc38 copr_base 20 k perl-overload noarch 1.35-492.fc38 copr_base 49 k perl-overloading noarch 0.02-492.fc38 copr_base 16 k perl-parent noarch 1:0.238-489.fc38 copr_base 14 k perl-perlfaq noarch 5.20210520-489.fc38 copr_base 374 k perl-ph x86_64 5.36.0-492.fc38 copr_base 45 k perl-podlators noarch 1:4.14-489.fc38 copr_base 112 k perl-sigtrap noarch 1.10-492.fc38 copr_base 19 k perl-sort noarch 2.05-492.fc38 copr_base 17 k perl-subs noarch 1.04-492.fc38 copr_base 15 k perl-threads x86_64 1:2.27-489.fc37 fedora 57 k perl-threads-shared x86_64 1.64-489.fc38 copr_base 45 k perl-utils noarch 5.36.0-492.fc38 copr_base 59 k perl-vars noarch 1.05-492.fc38 copr_base 16 k perl-version x86_64 8:0.99.29-490.fc38 copr_base 63 k perl-vmsish noarch 1.04-492.fc38 copr_base 18 k python-pip-wheel noarch 22.2.2-2.fc38 fedora 1.4 M python-setuptools-wheel noarch 65.5.0-1.fc38 fedora 715 k python3 x86_64 3.11.0-1.fc38 fedora 27 k python3-libs x86_64 3.11.0-1.fc38 fedora 9.6 M python3-pyparsing noarch 3.0.9-2.fc37 fedora 262 k systemtap-sdt-devel x86_64 4.8~pre16650659g6a096a7d-1.fc38 fedora 73 k Transaction Summary ======================================================================================== Install 252 Packages Total size: 109 M Total download size: 19 M Installed size: 360 M Downloading Packages: [SKIPPED] gc-8.2.2-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] guile22-2.2.7-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] libb2-0.98.1-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] libmpc-1.2.1-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] make-4.4-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] mpdecimal-2.5.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-B-1.83-492.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-Carp-1.52-489.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Class-Struct-0.66-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Data-Dumper-2.184-490.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-DynaLoader-1.52-492.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-Encode-3.19-492.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-Errno-1.36-492.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-Exporter-5.77-489.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Fcntl-1.15-492.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-File-Basename-2.85-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-File-Compare-1.100.700-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-File-Copy-2.39-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-File-Find-1.40-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-File-Path-2.18-489.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-File-Temp-0.231.100-489.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-File-stat-1.12-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Getopt-Long-2.52-489.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Getopt-Std-1.13-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-HTTP-Tiny-0.082-1.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-IO-1.50-492.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-IPC-Open3-1.22-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-MIME-Base64-3.16-489.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-POSIX-2.03-492.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-PathTools-3.84-489.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-Pod-Escapes-1.07-489.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Perldoc-3.28.01-490.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Simple-3.43-490.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Usage-2.03-3.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Scalar-List-Utils-1.63-489.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-SelectSaver-1.02-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Socket-2.036-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-Storable-3.26-489.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-Symbol-1.09-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Term-ANSIColor-5.01-490.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Text-ParseWords-3.31-489.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Text-Tabs+Wrap-2021.0814-489.fc38.noarch.rpm: Already downloaded 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npth-1.6-10.fc38.x86_64.rpm 159 kB/s | 24 kB 00:00 (241/252): perl-CPAN-2.34-4.fc37.noarch.rpm 2.7 MB/s | 570 kB 00:00 (242/252): perl-CPAN-Meta-Requirements-2.140-49 200 kB/s | 31 kB 00:00 (243/252): perl-Compress-Raw-Lzma-2.201-4.fc38. 325 kB/s | 49 kB 00:00 (244/252): perl-Filter-1.64-1.fc38.x86_64.rpm 991 kB/s | 89 kB 00:00 (245/252): perl-IO-Compress-Lzma-2.201-2.fc37.n 751 kB/s | 79 kB 00:00 (246/252): perl-Module-Build-0.42.31-15.fc37.no 2.3 MB/s | 264 kB 00:00 (247/252): perl-Module-Signature-0.88-4.fc37.no 1.0 MB/s | 83 kB 00:00 (248/252): perl-Net-Ping-2.75-2.fc38.noarch.rpm 614 kB/s | 50 kB 00:00 (249/252): perl-Perl-OSType-1.010-490.fc37.noar 296 kB/s | 23 kB 00:00 (250/252): perl-URI-5.17-1.fc38.noarch.rpm 706 kB/s | 123 kB 00:00 (251/252): python3-pyparsing-3.0.9-2.fc37.noarc 1.7 MB/s | 262 kB 00:00 (252/252): systemtap-sdt-devel-4.8~pre16650659g 509 kB/s | 73 kB 00:00 -------------------------------------------------------------------------------- Total 8.5 MB/s | 19 MB 00:02 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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glibc-devel-2.36.9000-11.fc38.x86_64 221/252 Installing : expat-2.4.8-2.fc37.x86_64 222/252 Installing : annobin-docs-10.92-1.fc38.noarch 223/252 Installing : mpdecimal-2.5.1-4.fc38.x86_64 224/252 Installing : libb2-0.98.1-7.fc38.x86_64 225/252 Installing : python3-3.11.0-1.fc38.x86_64 226/252 Installing : python3-libs-3.11.0-1.fc38.x86_64 227/252 Installing : python3-pyparsing-3.0.9-2.fc37.noarch 228/252 Installing : systemtap-sdt-devel-4.8~pre16650659g6a096a7d-1.f 229/252 Installing : gc-8.2.2-1.fc38.x86_64 230/252 Installing : guile22-2.2.7-6.fc38.x86_64 231/252 Installing : make-1:4.4-1.fc38.x86_64 232/252 Installing : gcc-12.2.1-3.fc38.x86_64 233/252 Running scriptlet: gcc-12.2.1-3.fc38.x86_64 233/252 Installing : perl-devel-4:5.36.0-492.fc38.x86_64 234/252 Installing : perl-ExtUtils-Install-2.20-489.fc38.noarch 235/252 Installing : perl-ExtUtils-MakeMaker-2:7.64-490.fc38.noarch 236/252 Installing : perl-Filter-2:1.64-1.fc38.x86_64 237/252 Installing : 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perl-Class-Struct-0.66-492.fc38.noarch 20/252 Verifying : perl-Compress-Bzip2-2.28-10.fc38.x86_64 21/252 Verifying : perl-Compress-Raw-Bzip2-2.201-2.fc38.x86_64 22/252 Verifying : perl-Compress-Raw-Zlib-2.202-3.fc38.x86_64 23/252 Verifying : perl-Config-Extensions-0.03-492.fc38.noarch 24/252 Verifying : perl-Config-Perl-V-0.34-1.fc38.noarch 25/252 Verifying : perl-DBM_Filter-0.06-492.fc38.noarch 26/252 Verifying : perl-DB_File-1.858-4.fc38.x86_64 27/252 Verifying : perl-Data-Dumper-2.184-490.fc38.x86_64 28/252 Verifying : perl-Data-OptList-0.112-5.fc38.noarch 29/252 Verifying : perl-Data-Section-0.200007-17.fc38.noarch 30/252 Verifying : perl-Devel-PPPort-3.68-490.fc38.x86_64 31/252 Verifying : perl-Devel-Peek-1.32-492.fc38.x86_64 32/252 Verifying : perl-Devel-SelfStubber-1.06-492.fc38.noarch 33/252 Verifying : perl-Devel-Size-0.83-13.fc38.x86_64 34/252 Verifying : perl-Digest-1.20-489.fc38.noarch 35/252 Verifying : perl-Digest-MD5-2.58-489.fc38.x86_64 36/252 Verifying : perl-Digest-SHA-1:6.03-1.fc38.x86_64 37/252 Verifying : perl-Digest-SHA1-2.13-37.fc38.x86_64 38/252 Verifying : perl-DirHandle-1.05-492.fc38.noarch 39/252 Verifying : perl-Dumpvalue-2.27-492.fc38.noarch 40/252 Verifying : perl-DynaLoader-1.52-492.fc38.x86_64 41/252 Verifying : perl-Encode-4:3.19-492.fc38.x86_64 42/252 Verifying : perl-Encode-devel-4:3.19-492.fc38.x86_64 43/252 Verifying : perl-English-1.11-492.fc38.noarch 44/252 Verifying : perl-Env-1.05-489.fc38.noarch 45/252 Verifying : perl-Errno-1.36-492.fc38.x86_64 46/252 Verifying : perl-Exporter-5.77-489.fc38.noarch 47/252 Verifying : perl-ExtUtils-CBuilder-1:0.280236-489.fc38.noarc 48/252 Verifying : perl-ExtUtils-Command-2:7.64-490.fc38.noarch 49/252 Verifying : perl-ExtUtils-Constant-0.25-492.fc38.noarch 50/252 Verifying : perl-ExtUtils-Embed-1.35-492.fc38.noarch 51/252 Verifying : perl-ExtUtils-Install-2.20-489.fc38.noarch 52/252 Verifying : perl-ExtUtils-MM-Utils-2:7.64-490.fc38.noarch 53/252 Verifying : perl-ExtUtils-MakeMaker-2:7.64-490.fc38.noarch 54/252 Verifying : perl-ExtUtils-Manifest-1:1.73-489.fc38.noarch 55/252 Verifying : perl-ExtUtils-Miniperl-1.11-492.fc38.noarch 56/252 Verifying : perl-ExtUtils-ParseXS-1:3.45-489.fc38.noarch 57/252 Verifying : perl-Fcntl-1.15-492.fc38.x86_64 58/252 Verifying : perl-File-Basename-2.85-492.fc38.noarch 59/252 Verifying : perl-File-Compare-1.100.700-492.fc38.noarch 60/252 Verifying : perl-File-Copy-2.39-492.fc38.noarch 61/252 Verifying : perl-File-DosGlob-1.12-492.fc38.x86_64 62/252 Verifying : perl-File-Fetch-1.04-489.fc38.noarch 63/252 Verifying : perl-File-Find-1.40-492.fc38.noarch 64/252 Verifying : perl-File-HomeDir-1.006-7.fc38.noarch 65/252 Verifying : perl-File-Path-2.18-489.fc38.noarch 66/252 Verifying : perl-File-Temp-1:0.231.100-489.fc38.noarch 67/252 Verifying : perl-File-Which-1.27-6.fc38.noarch 68/252 Verifying : perl-File-stat-1.12-492.fc38.noarch 69/252 Verifying : perl-FileCache-1.10-492.fc38.noarch 70/252 Verifying : 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88/252 Verifying : perl-IPC-SysV-2.09-490.fc38.x86_64 89/252 Verifying : perl-IPC-System-Simple-1.30-9.fc38.noarch 90/252 Verifying : perl-Importer-0.026-7.fc38.noarch 91/252 Verifying : perl-JSON-PP-1:4.12-1.fc38.noarch 92/252 Verifying : perl-Locale-Maketext-1.32-1.fc38.noarch 93/252 Verifying : perl-Locale-Maketext-Simple-1:0.21-492.fc38.noar 94/252 Verifying : perl-MIME-Base64-3.16-489.fc38.x86_64 95/252 Verifying : perl-MRO-Compat-0.15-4.fc38.noarch 96/252 Verifying : perl-Math-BigInt-1:1.9998.37-2.fc38.noarch 97/252 Verifying : perl-Math-BigInt-FastCalc-0.501.300-3.fc38.x86_6 98/252 Verifying : perl-Math-BigRat-0.2624-2.fc38.noarch 99/252 Verifying : perl-Math-Complex-1.59-492.fc38.noarch 100/252 Verifying : perl-Memoize-1.03-492.fc38.noarch 101/252 Verifying : perl-Module-CoreList-1:5.20221020-1.fc38.noarch 102/252 Verifying : perl-Module-CoreList-tools-1:5.20221020-1.fc38.n 103/252 Verifying : perl-Module-Load-1:0.36-489.fc38.noarch 104/252 Verifying : perl-Module-Load-Conditional-0.74-489.fc38.noarc 105/252 Verifying : perl-Module-Loaded-1:0.08-492.fc38.noarch 106/252 Verifying : perl-Module-Metadata-1.000037-489.fc38.noarch 107/252 Verifying : perl-NDBM_File-1.15-492.fc38.x86_64 108/252 Verifying : perl-NEXT-0.69-492.fc38.noarch 109/252 Verifying : perl-Net-1.03-492.fc38.noarch 110/252 Verifying : perl-ODBM_File-1.17-492.fc38.x86_64 111/252 Verifying : perl-Object-HashBase-0.009-10.fc38.noarch 112/252 Verifying : perl-Opcode-1.57-492.fc38.x86_64 113/252 Verifying : perl-POSIX-2.03-492.fc38.x86_64 114/252 Verifying : perl-Package-Generator-1.106-26.fc38.noarch 115/252 Verifying : perl-Params-Check-1:0.38-489.fc38.noarch 116/252 Verifying : perl-Params-Util-1.102-8.fc38.x86_64 117/252 Verifying : perl-PathTools-3.84-489.fc38.x86_64 118/252 Verifying : perl-PerlIO-via-QuotedPrint-0.10-3.fc38.noarch 119/252 Verifying : perl-Pod-Checker-4:1.75-3.fc38.noarch 120/252 Verifying : perl-Pod-Escapes-1:1.07-489.fc38.noarch 121/252 Verifying : perl-Pod-Functions-1.14-492.fc38.noarch 122/252 Verifying : perl-Pod-Html-1.33-492.fc38.noarch 123/252 Verifying : perl-Pod-Perldoc-3.28.01-490.fc38.noarch 124/252 Verifying : perl-Pod-Simple-1:3.43-490.fc38.noarch 125/252 Verifying : perl-Pod-Usage-4:2.03-3.fc38.noarch 126/252 Verifying : perl-Safe-2.43-492.fc38.noarch 127/252 Verifying : perl-Scalar-List-Utils-5:1.63-489.fc38.x86_64 128/252 Verifying : perl-Search-Dict-1.07-492.fc38.noarch 129/252 Verifying : perl-SelectSaver-1.02-492.fc38.noarch 130/252 Verifying : perl-SelfLoader-1.26-492.fc38.noarch 131/252 Verifying : perl-Socket-4:2.036-1.fc38.x86_64 132/252 Verifying : perl-Software-License-0.104002-2.fc38.noarch 133/252 Verifying : perl-Storable-1:3.26-489.fc38.x86_64 134/252 Verifying : perl-Sub-Exporter-0.988-5.fc38.noarch 135/252 Verifying : perl-Sub-Install-0.928-33.fc38.noarch 136/252 Verifying : perl-Symbol-1.09-492.fc38.noarch 137/252 Verifying : perl-Sys-Hostname-1.24-492.fc38.x86_64 138/252 Verifying : perl-Sys-Syslog-0.36-490.fc38.x86_64 139/252 Verifying : perl-Term-ANSIColor-5.01-490.fc38.noarch 140/252 Verifying : perl-Term-Complete-1.403-492.fc38.noarch 141/252 Verifying : perl-Term-ReadLine-1.17-492.fc38.noarch 142/252 Verifying : perl-Term-Table-0.016-4.fc38.noarch 143/252 Verifying : perl-Test-1.31-492.fc38.noarch 144/252 Verifying : perl-Test-Harness-1:3.44-490.fc38.noarch 145/252 Verifying : perl-Test-Simple-3:1.302191-2.fc38.noarch 146/252 Verifying : perl-Text-Abbrev-1.02-492.fc38.noarch 147/252 Verifying : perl-Text-Balanced-2.06-2.fc38.noarch 148/252 Verifying : perl-Text-Diff-1.45-16.fc38.noarch 149/252 Verifying : perl-Text-Glob-0.11-18.fc38.noarch 150/252 Verifying : perl-Text-ParseWords-3.31-489.fc38.noarch 151/252 Verifying : perl-Text-Tabs+Wrap-2021.0814-489.fc38.noarch 152/252 Verifying : perl-Text-Template-1.61-1.fc38.noarch 153/252 Verifying : perl-Thread-3.05-492.fc38.noarch 154/252 Verifying : perl-Thread-Queue-3.14-489.fc38.noarch 155/252 Verifying : perl-Thread-Semaphore-2.13-492.fc38.noarch 156/252 Verifying : perl-Tie-4.6-492.fc38.noarch 157/252 Verifying : perl-Tie-File-1.06-492.fc38.noarch 158/252 Verifying : perl-Tie-Memoize-1.1-492.fc38.noarch 159/252 Verifying : perl-Tie-RefHash-1.40-489.fc38.noarch 160/252 Verifying : perl-Time-1.03-492.fc38.noarch 161/252 Verifying : perl-Time-HiRes-4:1.9770-489.fc38.x86_64 162/252 Verifying : perl-Time-Local-2:1.300-489.fc38.noarch 163/252 Verifying : perl-Time-Piece-1.3401-492.fc38.x86_64 164/252 Verifying : perl-Unicode-Collate-1.31-489.fc38.x86_64 165/252 Verifying : perl-Unicode-Normalize-1.31-489.fc38.x86_64 166/252 Verifying : perl-Unicode-UCD-0.78-492.fc38.noarch 167/252 Verifying : perl-User-pwent-1.03-492.fc38.noarch 168/252 Verifying : perl-autodie-2.34-490.fc38.noarch 169/252 Verifying : perl-autouse-1.11-492.fc38.noarch 170/252 Verifying : perl-base-2.27-492.fc38.noarch 171/252 Verifying : perl-bignum-0.66-5.fc38.noarch 172/252 Verifying : perl-blib-1.07-492.fc38.noarch 173/252 Verifying : perl-constant-1.33-490.fc38.noarch 174/252 Verifying : perl-debugger-1.60-492.fc38.noarch 175/252 Verifying : perl-deprecate-0.04-492.fc38.noarch 176/252 Verifying : perl-devel-4:5.36.0-492.fc38.x86_64 177/252 Verifying : perl-diagnostics-1.39-492.fc38.noarch 178/252 Verifying : perl-doc-5.36.0-492.fc38.noarch 179/252 Verifying : perl-encoding-4:3.00-492.fc38.x86_64 180/252 Verifying : perl-encoding-warnings-0.13-492.fc38.noarch 181/252 Verifying : perl-experimental-0.029-1.fc38.noarch 182/252 Verifying : perl-fields-2.27-492.fc38.noarch 183/252 Verifying : perl-filetest-1.03-492.fc38.noarch 184/252 Verifying : perl-if-0.61.000-492.fc38.noarch 185/252 Verifying : perl-inc-latest-2:0.500-23.fc38.noarch 186/252 Verifying : perl-interpreter-4:5.36.0-492.fc38.x86_64 187/252 Verifying : perl-less-0.03-492.fc38.noarch 188/252 Verifying : perl-lib-0.65-492.fc38.x86_64 189/252 Verifying : perl-libnet-3.14-490.fc38.noarch 190/252 Verifying : perl-libnetcfg-4:5.36.0-492.fc38.noarch 191/252 Verifying : perl-libs-4:5.36.0-492.fc38.x86_64 192/252 Verifying : perl-local-lib-2.000029-3.fc38.noarch 193/252 Verifying : perl-locale-1.10-492.fc38.noarch 194/252 Verifying : perl-macros-4:5.36.0-492.fc38.noarch 195/252 Verifying : perl-meta-notation-5.36.0-492.fc38.noarch 196/252 Verifying : perl-mro-1.26-492.fc38.x86_64 197/252 Verifying : perl-open-1.13-492.fc38.noarch 198/252 Verifying : perl-overload-1.35-492.fc38.noarch 199/252 Verifying : perl-overloading-0.02-492.fc38.noarch 200/252 Verifying : perl-parent-1:0.238-489.fc38.noarch 201/252 Verifying : perl-perlfaq-5.20210520-489.fc38.noarch 202/252 Verifying : perl-ph-5.36.0-492.fc38.x86_64 203/252 Verifying : perl-podlators-1:4.14-489.fc38.noarch 204/252 Verifying : perl-sigtrap-1.10-492.fc38.noarch 205/252 Verifying : perl-sort-2.05-492.fc38.noarch 206/252 Verifying : perl-subs-1.04-492.fc38.noarch 207/252 Verifying : perl-threads-shared-1.64-489.fc38.x86_64 208/252 Verifying : perl-utils-5.36.0-492.fc38.noarch 209/252 Verifying : perl-vars-1.05-492.fc38.noarch 210/252 Verifying : perl-version-8:0.99.29-490.fc38.x86_64 211/252 Verifying : perl-vmsish-1.04-492.fc38.noarch 212/252 Verifying : annobin-docs-10.92-1.fc38.noarch 213/252 Verifying : annobin-plugin-gcc-10.92-1.fc38.x86_64 214/252 Verifying : cpp-12.2.1-3.fc38.x86_64 215/252 Verifying : expat-2.4.8-2.fc37.x86_64 216/252 Verifying : gcc-12.2.1-3.fc38.x86_64 217/252 Verifying : gcc-c++-12.2.1-3.fc38.x86_64 218/252 Verifying : gcc-plugin-annobin-12.2.1-3.fc38.x86_64 219/252 Verifying : glibc-devel-2.36.9000-11.fc38.x86_64 220/252 Verifying : glibc-headers-x86-2.36.9000-11.fc38.noarch 221/252 Verifying : gnutls-3.7.8-9.fc38.x86_64 222/252 Verifying : groff-base-1.22.4-10.fc37.x86_64 223/252 Verifying : kernel-headers-6.1.0-0.rc4.git0.1.fc38.x86_64 224/252 Verifying : libassuan-2.5.5-5.fc37.x86_64 225/252 Verifying : libgcrypt-1.10.1-4.fc37.x86_64 226/252 Verifying : libgpg-error-1.46-1.fc38.x86_64 227/252 Verifying : libksba-1.6.2-1.fc38.x86_64 228/252 Verifying : libstdc++-devel-12.2.1-3.fc38.x86_64 229/252 Verifying : libtool-ltdl-2.4.7-2.fc37.x86_64 230/252 Verifying : libxcrypt-devel-4.4.30-1.fc38.x86_64 231/252 Verifying : ncurses-6.3-3.20220501.fc37.x86_64 232/252 Verifying : nettle-3.8-2.fc37.x86_64 233/252 Verifying : npth-1.6-10.fc38.x86_64 234/252 Verifying : perl-CPAN-2.34-4.fc37.noarch 235/252 Verifying : perl-CPAN-Meta-Requirements-2.140-490.fc37.noarc 236/252 Verifying : perl-Compress-Raw-Lzma-2.201-4.fc38.x86_64 237/252 Verifying : perl-Filter-2:1.64-1.fc38.x86_64 238/252 Verifying : perl-IO-Compress-Lzma-2.201-2.fc37.noarch 239/252 Verifying : perl-Module-Build-2:0.42.31-15.fc37.noarch 240/252 Verifying : perl-Module-Signature-0.88-4.fc37.noarch 241/252 Verifying : perl-Net-Ping-2.75-2.fc38.noarch 242/252 Verifying : perl-Perl-OSType-1.010-490.fc37.noarch 243/252 Verifying : perl-Term-Cap-1.17-489.fc37.noarch 244/252 Verifying : perl-URI-5.17-1.fc38.noarch 245/252 Verifying : perl-threads-1:2.27-489.fc37.x86_64 246/252 Verifying : python-pip-wheel-22.2.2-2.fc38.noarch 247/252 Verifying : python-setuptools-wheel-65.5.0-1.fc38.noarch 248/252 Verifying : python3-3.11.0-1.fc38.x86_64 249/252 Verifying : python3-libs-3.11.0-1.fc38.x86_64 250/252 Verifying : python3-pyparsing-3.0.9-2.fc37.noarch 251/252 Verifying : systemtap-sdt-devel-4.8~pre16650659g6a096a7d-1.f 252/252 Installed: annobin-docs-10.92-1.fc38.noarch annobin-plugin-gcc-10.92-1.fc38.x86_64 cpp-12.2.1-3.fc38.x86_64 expat-2.4.8-2.fc37.x86_64 gc-8.2.2-1.fc38.x86_64 gcc-12.2.1-3.fc38.x86_64 gcc-c++-12.2.1-3.fc38.x86_64 gcc-plugin-annobin-12.2.1-3.fc38.x86_64 glibc-devel-2.36.9000-11.fc38.x86_64 glibc-headers-x86-2.36.9000-11.fc38.noarch gnupg2-2.3.8-1.fc38.x86_64 gnutls-3.7.8-9.fc38.x86_64 groff-base-1.22.4-10.fc37.x86_64 guile22-2.2.7-6.fc38.x86_64 kernel-headers-6.1.0-0.rc4.git0.1.fc38.x86_64 libassuan-2.5.5-5.fc37.x86_64 libb2-0.98.1-7.fc38.x86_64 libgcrypt-1.10.1-4.fc37.x86_64 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perl-Compress-Raw-Lzma-2.201-4.fc38.x86_64 perl-Compress-Raw-Zlib-2.202-3.fc38.x86_64 perl-Config-Extensions-0.03-492.fc38.noarch perl-Config-Perl-V-0.34-1.fc38.noarch perl-DBM_Filter-0.06-492.fc38.noarch perl-DB_File-1.858-4.fc38.x86_64 perl-Data-Dumper-2.184-490.fc38.x86_64 perl-Data-OptList-0.112-5.fc38.noarch perl-Data-Section-0.200007-17.fc38.noarch perl-Devel-PPPort-3.68-490.fc38.x86_64 perl-Devel-Peek-1.32-492.fc38.x86_64 perl-Devel-SelfStubber-1.06-492.fc38.noarch perl-Devel-Size-0.83-13.fc38.x86_64 perl-Digest-1.20-489.fc38.noarch perl-Digest-MD5-2.58-489.fc38.x86_64 perl-Digest-SHA-1:6.03-1.fc38.x86_64 perl-Digest-SHA1-2.13-37.fc38.x86_64 perl-DirHandle-1.05-492.fc38.noarch perl-Dumpvalue-2.27-492.fc38.noarch perl-DynaLoader-1.52-492.fc38.x86_64 perl-Encode-4:3.19-492.fc38.x86_64 perl-Encode-devel-4:3.19-492.fc38.x86_64 perl-English-1.11-492.fc38.noarch perl-Env-1.05-489.fc38.noarch perl-Errno-1.36-492.fc38.x86_64 perl-Exporter-5.77-489.fc38.noarch perl-ExtUtils-CBuilder-1:0.280236-489.fc38.noarch perl-ExtUtils-Command-2:7.64-490.fc38.noarch perl-ExtUtils-Constant-0.25-492.fc38.noarch perl-ExtUtils-Embed-1.35-492.fc38.noarch perl-ExtUtils-Install-2.20-489.fc38.noarch perl-ExtUtils-MM-Utils-2:7.64-490.fc38.noarch perl-ExtUtils-MakeMaker-2:7.64-490.fc38.noarch perl-ExtUtils-Manifest-1:1.73-489.fc38.noarch perl-ExtUtils-Miniperl-1.11-492.fc38.noarch perl-ExtUtils-ParseXS-1:3.45-489.fc38.noarch perl-Fcntl-1.15-492.fc38.x86_64 perl-File-Basename-2.85-492.fc38.noarch perl-File-Compare-1.100.700-492.fc38.noarch perl-File-Copy-2.39-492.fc38.noarch perl-File-DosGlob-1.12-492.fc38.x86_64 perl-File-Fetch-1.04-489.fc38.noarch perl-File-Find-1.40-492.fc38.noarch perl-File-HomeDir-1.006-7.fc38.noarch perl-File-Path-2.18-489.fc38.noarch perl-File-Temp-1:0.231.100-489.fc38.noarch perl-File-Which-1.27-6.fc38.noarch perl-File-stat-1.12-492.fc38.noarch perl-FileCache-1.10-492.fc38.noarch perl-FileHandle-2.03-492.fc38.noarch perl-Filter-2:1.64-1.fc38.x86_64 perl-Filter-Simple-0.96-489.fc38.noarch perl-FindBin-1.53-492.fc38.noarch perl-GDBM_File-1:1.23-492.fc38.x86_64 perl-Getopt-Long-1:2.52-489.fc38.noarch perl-Getopt-Std-1.13-492.fc38.noarch perl-HTTP-Tiny-0.082-1.fc38.noarch perl-Hash-Util-0.28-492.fc38.x86_64 perl-Hash-Util-FieldHash-1.26-492.fc38.x86_64 perl-I18N-Collate-1.02-492.fc38.noarch perl-I18N-LangTags-0.45-492.fc38.noarch perl-I18N-Langinfo-0.21-492.fc38.x86_64 perl-IO-1.50-492.fc38.x86_64 perl-IO-Compress-2.201-3.fc38.noarch perl-IO-Compress-Lzma-2.201-2.fc37.noarch perl-IO-Socket-IP-0.41-490.fc38.noarch perl-IO-Zlib-1:1.11-489.fc38.noarch perl-IPC-Cmd-2:1.04-490.fc38.noarch perl-IPC-Open3-1.22-492.fc38.noarch perl-IPC-SysV-2.09-490.fc38.x86_64 perl-IPC-System-Simple-1.30-9.fc38.noarch perl-Importer-0.026-7.fc38.noarch perl-JSON-PP-1:4.12-1.fc38.noarch perl-Locale-Maketext-1.32-1.fc38.noarch perl-Locale-Maketext-Simple-1:0.21-492.fc38.noarch perl-MIME-Base64-3.16-489.fc38.x86_64 perl-MRO-Compat-0.15-4.fc38.noarch perl-Math-BigInt-1:1.9998.37-2.fc38.noarch perl-Math-BigInt-FastCalc-0.501.300-3.fc38.x86_64 perl-Math-BigRat-0.2624-2.fc38.noarch perl-Math-Complex-1.59-492.fc38.noarch perl-Memoize-1.03-492.fc38.noarch perl-Module-Build-2:0.42.31-15.fc37.noarch perl-Module-CoreList-1:5.20221020-1.fc38.noarch perl-Module-CoreList-tools-1:5.20221020-1.fc38.noarch perl-Module-Load-1:0.36-489.fc38.noarch perl-Module-Load-Conditional-0.74-489.fc38.noarch perl-Module-Loaded-1:0.08-492.fc38.noarch perl-Module-Metadata-1.000037-489.fc38.noarch perl-Module-Signature-0.88-4.fc37.noarch perl-NDBM_File-1.15-492.fc38.x86_64 perl-NEXT-0.69-492.fc38.noarch perl-Net-1.03-492.fc38.noarch perl-Net-Ping-2.75-2.fc38.noarch perl-ODBM_File-1.17-492.fc38.x86_64 perl-Object-HashBase-0.009-10.fc38.noarch perl-Opcode-1.57-492.fc38.x86_64 perl-POSIX-2.03-492.fc38.x86_64 perl-Package-Generator-1.106-26.fc38.noarch perl-Params-Check-1:0.38-489.fc38.noarch perl-Params-Util-1.102-8.fc38.x86_64 perl-PathTools-3.84-489.fc38.x86_64 perl-Perl-OSType-1.010-490.fc37.noarch perl-PerlIO-via-QuotedPrint-0.10-3.fc38.noarch perl-Pod-Checker-4:1.75-3.fc38.noarch perl-Pod-Escapes-1:1.07-489.fc38.noarch perl-Pod-Functions-1.14-492.fc38.noarch perl-Pod-Html-1.33-492.fc38.noarch perl-Pod-Perldoc-3.28.01-490.fc38.noarch perl-Pod-Simple-1:3.43-490.fc38.noarch perl-Pod-Usage-4:2.03-3.fc38.noarch perl-Safe-2.43-492.fc38.noarch perl-Scalar-List-Utils-5:1.63-489.fc38.x86_64 perl-Search-Dict-1.07-492.fc38.noarch perl-SelectSaver-1.02-492.fc38.noarch perl-SelfLoader-1.26-492.fc38.noarch perl-Socket-4:2.036-1.fc38.x86_64 perl-Software-License-0.104002-2.fc38.noarch perl-Storable-1:3.26-489.fc38.x86_64 perl-Sub-Exporter-0.988-5.fc38.noarch perl-Sub-Install-0.928-33.fc38.noarch perl-Symbol-1.09-492.fc38.noarch perl-Sys-Hostname-1.24-492.fc38.x86_64 perl-Sys-Syslog-0.36-490.fc38.x86_64 perl-Term-ANSIColor-5.01-490.fc38.noarch perl-Term-Cap-1.17-489.fc37.noarch perl-Term-Complete-1.403-492.fc38.noarch perl-Term-ReadLine-1.17-492.fc38.noarch perl-Term-Table-0.016-4.fc38.noarch perl-Test-1.31-492.fc38.noarch perl-Test-Harness-1:3.44-490.fc38.noarch perl-Test-Simple-3:1.302191-2.fc38.noarch perl-Text-Abbrev-1.02-492.fc38.noarch perl-Text-Balanced-2.06-2.fc38.noarch perl-Text-Diff-1.45-16.fc38.noarch perl-Text-Glob-0.11-18.fc38.noarch perl-Text-ParseWords-3.31-489.fc38.noarch perl-Text-Tabs+Wrap-2021.0814-489.fc38.noarch perl-Text-Template-1.61-1.fc38.noarch perl-Thread-3.05-492.fc38.noarch perl-Thread-Queue-3.14-489.fc38.noarch perl-Thread-Semaphore-2.13-492.fc38.noarch perl-Tie-4.6-492.fc38.noarch perl-Tie-File-1.06-492.fc38.noarch perl-Tie-Memoize-1.1-492.fc38.noarch perl-Tie-RefHash-1.40-489.fc38.noarch perl-Time-1.03-492.fc38.noarch perl-Time-HiRes-4:1.9770-489.fc38.x86_64 perl-Time-Local-2:1.300-489.fc38.noarch perl-Time-Piece-1.3401-492.fc38.x86_64 perl-URI-5.17-1.fc38.noarch perl-Unicode-Collate-1.31-489.fc38.x86_64 perl-Unicode-Normalize-1.31-489.fc38.x86_64 perl-Unicode-UCD-0.78-492.fc38.noarch perl-User-pwent-1.03-492.fc38.noarch perl-autodie-2.34-490.fc38.noarch perl-autouse-1.11-492.fc38.noarch perl-base-2.27-492.fc38.noarch perl-bignum-0.66-5.fc38.noarch perl-blib-1.07-492.fc38.noarch perl-constant-1.33-490.fc38.noarch perl-debugger-1.60-492.fc38.noarch perl-deprecate-0.04-492.fc38.noarch perl-devel-4:5.36.0-492.fc38.x86_64 perl-diagnostics-1.39-492.fc38.noarch perl-doc-5.36.0-492.fc38.noarch perl-encoding-4:3.00-492.fc38.x86_64 perl-encoding-warnings-0.13-492.fc38.noarch perl-experimental-0.029-1.fc38.noarch perl-fields-2.27-492.fc38.noarch perl-filetest-1.03-492.fc38.noarch perl-if-0.61.000-492.fc38.noarch perl-inc-latest-2:0.500-23.fc38.noarch perl-interpreter-4:5.36.0-492.fc38.x86_64 perl-less-0.03-492.fc38.noarch perl-lib-0.65-492.fc38.x86_64 perl-libnet-3.14-490.fc38.noarch perl-libnetcfg-4:5.36.0-492.fc38.noarch perl-libs-4:5.36.0-492.fc38.x86_64 perl-local-lib-2.000029-3.fc38.noarch perl-locale-1.10-492.fc38.noarch perl-macros-4:5.36.0-492.fc38.noarch perl-meta-notation-5.36.0-492.fc38.noarch perl-mro-1.26-492.fc38.x86_64 perl-open-1.13-492.fc38.noarch perl-overload-1.35-492.fc38.noarch perl-overloading-0.02-492.fc38.noarch perl-parent-1:0.238-489.fc38.noarch perl-perlfaq-5.20210520-489.fc38.noarch perl-ph-5.36.0-492.fc38.x86_64 perl-podlators-1:4.14-489.fc38.noarch perl-sigtrap-1.10-492.fc38.noarch perl-sort-2.05-492.fc38.noarch perl-subs-1.04-492.fc38.noarch perl-threads-1:2.27-489.fc37.x86_64 perl-threads-shared-1.64-489.fc38.x86_64 perl-utils-5.36.0-492.fc38.noarch perl-vars-1.05-492.fc38.noarch perl-version-8:0.99.29-490.fc38.x86_64 perl-vmsish-1.04-492.fc38.noarch python-pip-wheel-22.2.2-2.fc38.noarch python-setuptools-wheel-65.5.0-1.fc38.noarch python3-3.11.0-1.fc38.x86_64 python3-libs-3.11.0-1.fc38.x86_64 python3-pyparsing-3.0.9-2.fc37.noarch systemtap-sdt-devel-4.8~pre16650659g6a096a7d-1.fc38.x86_64 Complete! Finish: build setup for hmmer-3.3.2-2.fc38.src.rpm Start: rpmbuild hmmer-3.3.2-2.fc38.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1659312000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Iqz5A6 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf hmmer-3.3.2 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/hmmer-3.3.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd hmmer-3.3.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.t1KHAH + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd hmmer-3.3.2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2020-11-26 21:19:58.000000000 +0000 +++ ./configure 2022-11-09 09:42:00.923293037 +0000 @@ -1898,7 +1898,7 @@ #ifdef __cplusplus extern "C" #endif -char $2 (); +__attribute__ ((used)) char $2 (); /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./easel/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./easel/config.sub ++ basename ./easel/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./easel/config.sub '/usr/lib/rpm/redhat/config.sub' -> './easel/config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./easel/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./easel/config.guess ++ basename ./easel/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./easel/config.guess '/usr/lib/rpm/redhat/config.guess' -> './easel/config.guess' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config.sub ++ basename ./config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub '/usr/lib/rpm/redhat/config.sub' -> './config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./config.guess ++ basename ./config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess '/usr/lib/rpm/redhat/config.guess' -> './config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh ++ grep -q runstatedir=DIR ./configure + ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info configure: WARNING: unrecognized options: --disable-dependency-tracking configure: Configuring HMMER3 for your system. checking build system type... x86_64-redhat-linux-gnu checking host system type... x86_64-redhat-linux-gnu checking whether to compile using MPI... no checking for x86_64-redhat-linux-gnu-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking for x86_64-redhat-linux-gnu-strip... no checking for strip... strip checking for x86_64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking for ar... /usr/bin/ar checking whether ln -s works... yes checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking whether gcc is Clang... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking whether gcc can compile our Altivec/VMX code... no checking whether gcc can compile our SSE code... yes configure: Activating Intel/AMD SSE vector DP implementation checking whether _MM_SET_FLUSH_ZERO_MODE is supported... yes checking compiler support --start-group... yes checking for gzip... /usr/bin/gzip checking for python3... yes checking for library containing clock_gettime... none required checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/sysctl.h... no checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking whether byte ordering is bigendian... no checking for __attribute__((noreturn))... yes checking for __attribute__((format))... yes checking for mkstemp... yes checking for popen... yes checking for putenv... yes checking for strcasecmp... yes checking for strsep... yes checking for times... yes checking for getpid... yes checking for sysctl... no checking for sysconf... yes checking for getcwd... yes checking for chmod... yes checking for stat... yes checking for fstat... yes checking for erfc... no checking for library containing ntohs... none required checking for library containing ntohl... none required checking for library containing htons... none required checking for library containing htonl... none required checking for library containing socket... none required checking for library containing inet_pton... none required checking for _LARGEFILE_SOURCE value needed for large files... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating profmark/Makefile config.status: creating src/impl_sse/Makefile config.status: creating documentation/Makefile config.status: creating documentation/man/Makefile config.status: creating documentation/userguide/Makefile config.status: creating documentation/userguide/inclusions/Makefile config.status: creating libdivsufsort/Makefile config.status: creating easel/Makefile config.status: creating easel/miniapps/Makefile config.status: creating easel/testsuite/Makefile config.status: creating easel/documentation/Makefile config.status: creating documentation/userguide/titlepage.tex config.status: creating documentation/userguide/titlepage_daemon.tex config.status: creating documentation/userguide/copyright.tex config.status: creating documentation/man/alimask.man config.status: creating documentation/man/hmmalign.man config.status: creating documentation/man/hmmbuild.man config.status: creating documentation/man/hmmc2.man config.status: creating documentation/man/hmmconvert.man config.status: creating documentation/man/hmmemit.man config.status: creating documentation/man/hmmer.man config.status: creating documentation/man/hmmfetch.man config.status: creating documentation/man/hmmlogo.man config.status: creating documentation/man/hmmpgmd.man config.status: creating documentation/man/hmmpgmd_shard.man config.status: creating documentation/man/hmmpress.man config.status: creating documentation/man/hmmscan.man config.status: creating documentation/man/hmmsearch.man config.status: creating documentation/man/hmmsim.man config.status: creating documentation/man/hmmstat.man config.status: creating documentation/man/jackhmmer.man config.status: creating documentation/man/makehmmerdb.man config.status: creating documentation/man/nhmmer.man config.status: creating documentation/man/nhmmscan.man config.status: creating documentation/man/phmmer.man config.status: creating easel/miniapps/esl-afetch.man config.status: creating easel/miniapps/esl-alimanip.man config.status: creating easel/miniapps/esl-alimap.man config.status: creating easel/miniapps/esl-alimask.man config.status: creating easel/miniapps/esl-alimerge.man config.status: creating easel/miniapps/esl-alipid.man config.status: creating easel/miniapps/esl-alirev.man config.status: creating easel/miniapps/esl-alistat.man config.status: creating easel/miniapps/esl-compalign.man config.status: creating easel/miniapps/esl-compstruct.man config.status: creating easel/miniapps/esl-construct.man config.status: creating easel/miniapps/esl-histplot.man config.status: creating easel/miniapps/esl-mask.man config.status: creating easel/miniapps/esl-mixdchlet.man config.status: creating easel/miniapps/esl-reformat.man config.status: creating easel/miniapps/esl-selectn.man config.status: creating easel/miniapps/esl-seqrange.man config.status: creating easel/miniapps/esl-seqstat.man config.status: creating easel/miniapps/esl-sfetch.man config.status: creating easel/miniapps/esl-shuffle.man config.status: creating easel/miniapps/esl-ssdraw.man config.status: creating easel/miniapps/esl-translate.man config.status: creating easel/miniapps/esl-weight.man config.status: creating easel/decoy_config.h config.status: creating src/p7_config.h config.status: creating easel/esl_config.h config.status: creating libdivsufsort/divsufsort.h config.status: linking src/impl_sse to src/impl configure: WARNING: unrecognized options: --disable-dependency-tracking HMMER configuration: compiler: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -pthread host: x86_64-redhat-linux-gnu linker: -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes libraries: DP implementation: sse Now do 'make' to build HMMER, and optionally: 'make check' to run self tests, 'make install' to install programs and man pages, '(cd easel; make install)' to install Easel tools. + make -j2 SUBDIR easel CC easel.o CC esl_alloc.o CC esl_alphabet.o CC esl_arr2.o CC esl_arr3.o CC esl_bitfield.o CC esl_buffer.o CC esl_cluster.o CC esl_composition.o CC esl_cpu.o CC esl_dirichlet.o CC esl_distance.o CC esl_dmatrix.o CC esl_dsqdata.o CC esl_exponential.o CC esl_fileparser.o CC esl_gamma.o CC esl_gencode.o CC esl_getopts.o CC esl_gev.o In function 'process_longopt', inlined from 'esl_getopts' at esl_getopts.c:1371:12, inlined from 'esl_opt_ProcessCmdline' at esl_getopts.c:549:20: esl_getopts.c:1433:13: warning: 'opti' may be used uninitialized [-Wmaybe-uninitialized] 1433 | if (g->opt[opti].type != eslARG_NONE) | ^ esl_getopts.c: In function 'esl_opt_ProcessCmdline': esl_getopts.c:1404:9: note: 'opti' was declared here 1404 | int opti; /* option number found */ | ^~~~ CC esl_graph.o CC esl_gumbel.o CC esl_heap.o CC esl_histogram.o CC esl_hmm.o CC esl_huffman.o CC esl_hyperexp.o CC esl_json.o esl_json.c: In function 'esl_json_Validate': esl_json.c:752:33: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 752 | case eslJSON_BOOLEAN: if (! esl_memstrcmp(bf->mem + pos1, pos2-pos1+1, "true") && | ^~ esl_json.c:753:167: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 753 | ! esl_memstrcmp(bf->mem + pos1, pos2-pos1+1, "false")) ESL_FAIL(eslFAIL, errbuf, "boolean isn't a boolean, tok %d", i); break; | ^~~~~ CC esl_keyhash.o CC esl_matrixops.o CC esl_mem.o CC esl_minimizer.o esl_minimizer.c: In function 'esl_min_ConjugateGradientDescent': esl_minimizer.c:243:23: warning: 'fx' may be used uninitialized [-Wmaybe-uninitialized] 243 | if (opt_fx) *opt_fx = fx; | ~~~~~~~~^~~~ esl_minimizer.c:119:10: note: 'fx' was declared here 119 | double fx; | ^~ In function 'brent', inlined from 'esl_min_ConjugateGradientDescent' at esl_minimizer.c:192:7: esl_minimizer.c:720:21: warning: 'cx' may be used uninitialized [-Wmaybe-uninitialized] 720 | m = 0.5 * (a+b); | ~~^~~ esl_minimizer.c: In function 'esl_min_ConjugateGradientDescent': esl_minimizer.c:118:16: note: 'cx' was declared here 118 | double ax,bx,cx; | ^~ In function 'brent', inlined from 'esl_min_ConjugateGradientDescent' at esl_minimizer.c:192:7: esl_minimizer.c:720:21: warning: 'ax' may be used uninitialized [-Wmaybe-uninitialized] 720 | m = 0.5 * (a+b); | ~~^~~ esl_minimizer.c: In function 'esl_min_ConjugateGradientDescent': esl_minimizer.c:118:10: note: 'ax' was declared here 118 | double ax,bx,cx; | ^~ CC esl_mixdchlet.o CC esl_mixgev.o CC esl_mpi.o CC esl_msa.o CC esl_msacluster.o CC esl_msafile.o CC esl_msafile2.o CC esl_msafile_a2m.o CC esl_msafile_afa.o CC esl_msafile_clustal.o esl_msafile_clustal.c: In function 'esl_msafile_clustal_Read': esl_msafile_clustal.c:248:12: warning: 'block_seq_len' may be used uninitialized [-Wmaybe-uninitialized] 248 | if (seq_len != block_seq_len) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence end is misaligned"); | ^ esl_msafile_clustal.c:203:30: note: 'block_seq_len' was declared here 203 | esl_pos_t block_seq_start, block_seq_len; | ^~~~~~~~~~~~~ esl_msafile_clustal.c:247:12: warning: 'block_seq_start' may be used uninitialized [-Wmaybe-uninitialized] 247 | if (seq_start != block_seq_start) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence start is misaligned"); | ^ esl_msafile_clustal.c:203:13: note: 'block_seq_start' was declared here 203 | esl_pos_t block_seq_start, block_seq_len; | ^~~~~~~~~~~~~~~ CC esl_msafile_phylip.o CC esl_msafile_psiblast.o In function 'phylip_interleaved_Read', inlined from 'esl_msafile_phylip_Read' at esl_msafile_phylip.c:284:56: esl_msafile_phylip.c:452:15: warning: 'block_alen' may be used uninitialized [-Wmaybe-uninitialized] 452 | else if (cur_alen - alen != block_alen) ESL_XFAIL(eslEFORMAT, afp->errmsg, "number of residues on line differs from previous seqs in alignment block"); | ^ esl_msafile_phylip.c: In function 'esl_msafile_phylip_Read': esl_msafile_phylip.c:422:13: note: 'block_alen' was declared here 422 | int64_t block_alen; /* # of residues being added by current block */ | ^~~~~~~~~~ esl_msafile_psiblast.c: In function 'esl_msafile_psiblast_Read': esl_msafile_psiblast.c:229:12: warning: 'block_seq_len' may be used uninitialized [-Wmaybe-uninitialized] 229 | if (seq_len != block_seq_len) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence end is misaligned"); | ^ esl_msafile_psiblast.c:195:30: note: 'block_seq_len' was declared here 195 | esl_pos_t block_seq_start, block_seq_len; | ^~~~~~~~~~~~~ esl_msafile_psiblast.c:228:12: warning: 'block_seq_start' may be used uninitialized [-Wmaybe-uninitialized] 228 | if (seq_start != block_seq_start) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence start is misaligned"); | ^ esl_msafile_psiblast.c:195:13: note: 'block_seq_start' was declared here 195 | esl_pos_t block_seq_start, block_seq_len; | ^~~~~~~~~~~~~~~ In function 'phylip_check_interleaved', inlined from 'esl_msafile_phylip_CheckFileFormat' at esl_msafile_phylip.c:389:13: esl_msafile_phylip.c:739:16: warning: 'nres1' may be used uninitialized [-Wmaybe-uninitialized] 739 | if (nres1+nres2 == alen) break; | ~~~~~^~~~~~ esl_msafile_phylip.c: In function 'esl_msafile_phylip_CheckFileFormat': esl_msafile_phylip.c:687:13: note: 'nres1' was declared here 687 | int nres1; | ^~~~~ esl_msafile_phylip.c:683:20: warning: 'ncols0' may be used uninitialized [-Wmaybe-uninitialized] 683 | int ncols, ncols0; | ^~~~~~ CC esl_msafile_selex.o CC esl_msafile_stockholm.o CC esl_msashuffle.o CC esl_msaweight.o CC esl_normal.o CC esl_paml.o CC esl_quicksort.o CC esl_random.o esl_msaweight.c: In function 'esl_msaweight_IDFilter_adv': esl_msaweight.c:1035:9: warning: 'conscols_110' may be used uninitialized [-Wmaybe-uninitialized] 1035 | collect_counts(cfg, msa, conscols, ncons, ct, NULL); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ esl_msaweight.c:435:1: note: by argument 3 of type 'const int *' to 'collect_counts.isra.0' declared here 435 | collect_counts(const ESL_MSAWEIGHT_CFG *cfg, const ESL_MSA *msa, const int *conscols, int ncons, int **ct, ESL_MSAWEIGHT_DAT *dat) | ^~~~~~~~~~~~~~ CC esl_rand64.o CC esl_randomseq.o CC esl_ratematrix.o CC esl_recorder.o CC esl_red_black.o CC esl_regexp.o CC esl_rootfinder.o CC esl_scorematrix.o CC esl_sq.o CC esl_sqio.o CC esl_sqio_ascii.o CC esl_sqio_ncbi.o CC esl_ssi.o CC esl_stack.o CC esl_stats.o CC esl_stopwatch.o CC esl_stretchexp.o CC esl_subcmd.o CC esl_threads.o CC esl_tree.o CC esl_varint.o esl_varint.c: In function 'esl_varint_google_decode': esl_varint.c:474:11: warning: 'grp' may be used uninitialized [-Wmaybe-uninitialized] 474 | if (grp & cmask) { status = eslEOD; goto ERROR; } | ~~~~^~~~~~~ esl_varint.c:464:12: note: 'grp' was declared here 464 | uint64_t grp; // current k-bit code group | ^~~ CC esl_vectorops.o CC esl_weibull.o CC esl_workqueue.o CC esl_wuss.o CC esl_sse.o esl_wuss.c: In function 'esl_wuss2ct': esl_wuss.c:136:10: warning: 'status' may be used uninitialized [-Wmaybe-uninitialized] 136 | return status; | ^~~~~~ esl_wuss.c:56:14: note: 'status' was declared here 56 | int status; /* success or failure return status */ | ^~~~~~ CC esl_avx.o CC esl_avx512.o CC esl_neon.o CC esl_vmx.o AR libeasel.a SUBDIR miniapps GEN esl-alimanip GEN esl-afetch GEN esl-alimap GEN esl-alimask In function 'mask_based_on_postprobs', inlined from 'main' at esl-alimask.c:482:18: esl-alimask.c:1085:33: warning: 'ppidx_thresh' may be used uninitialized [-Wmaybe-uninitialized] 1085 | for(ppidx = 10; ppidx >= ppidx_thresh; ppidx--) { | ~~~~~~^~~~~~~~~~~~~~~ esl-alimask.c: In function 'main': esl-alimask.c:1007:7: note: 'ppidx_thresh' was declared here 1007 | int ppidx_thresh; | ^~~~~~~~~~~~ GEN esl-alimerge esl-alimerge.c: In function 'validate_and_copy_msa_annotation': esl-alimerge.c:732:7: warning: 'found_tag' may be used uninitialized [-Wmaybe-uninitialized] 732 | int found_tag; | ^~~~~~~~~ esl-alimerge.c: In function 'main': esl-alimerge.c:343:9: warning: 'clen' may be used uninitialized [-Wmaybe-uninitialized] 343 | esl_fatal("Error, all alignments must have identical non-gap #=GC RF lengths; expected (RF length of first ali read): %d,\nalignment %d of file %d length is %d (%s))\n", clen, nali_per_file[fi], (fi+1), cur_clen, alifile_list[fi]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ esl-alimerge.c:118:17: note: 'clen' was declared here 118 | int clen; /* consensus length (non-gap #=GC RF length) of all alignments */ | ^~~~ In file included from /usr/include/stdio.h:906, from esl-alimerge.c:26: In function 'fprintf', inlined from 'main' at esl-alimerge.c:366:2: /usr/include/bits/stdio2.h:79:10: warning: 'namewidth' may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ esl-alimerge.c: In function 'main': esl-alimerge.c:136:14: note: 'namewidth' was declared here 136 | int namewidth; /* max width of file name */ | ^~~~~~~~~ GEN esl-alipid GEN esl-alirev GEN esl-alistat In file included from /usr/include/stdio.h:906, from esl-alistat.c:6: In function 'printf', inlined from 'main' at esl-alistat.c:294:6: /usr/include/bits/stdio2.h:86:10: warning: 'large' may be used uninitialized [-Wmaybe-uninitialized] 86 | return __printf_chk (__USE_FORTIFY_LEVEL - 1, __fmt, __va_arg_pack ()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ esl-alistat.c: In function 'main': esl-alistat.c:74:24: note: 'large' was declared here 74 | int64_t small, large; /* smallest, largest sequence */ | ^~~~~ In function 'printf', inlined from 'main' at esl-alistat.c:293:6: /usr/include/bits/stdio2.h:86:10: warning: 'small' may be used uninitialized [-Wmaybe-uninitialized] 86 | return __printf_chk (__USE_FORTIFY_LEVEL - 1, __fmt, __va_arg_pack ()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ esl-alistat.c: In function 'main': esl-alistat.c:74:17: note: 'small' was declared here 74 | int64_t small, large; /* smallest, largest sequence */ | ^~~~~ GEN esl-compalign esl-compalign.c: In function 'main': esl-compalign.c:322:45: warning: 'ppidx' may be used uninitialized [-Wmaybe-uninitialized] 322 | if(do_post_for_this_rfpos) ptm[ppidx]++; | ^ esl-compalign.c:104:7: note: 'ppidx' was declared here 104 | int ppidx; /* index of PP */ | ^~~~~ esl-compalign.c:232:13: warning: 'masklen' may be used uninitialized [-Wmaybe-uninitialized] 232 | esl_fatal("Length of mask in %s (%d) not equal to non-gap RF len of alignments (%d)\n", esl_opt_GetString(go, "--p-mask"), masklen, rflen); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ esl-compalign.c:90:7: note: 'masklen' was declared here 90 | int masklen; | ^~~~~~~ GEN esl-compstruct GEN esl-construct esl-construct.c: In function 'main': esl-construct.c:573:24: warning: 'fmin' may be used uninitialized [-Wmaybe-uninitialized] 573 | if(do_fmin) { printf("#\n# determined to be %.3f\n", fthresh); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ esl-construct.c:129:9: note: 'fmin' was declared here 129 | float fmin; | ^~~~ GEN esl-histplot GEN esl-mask GEN esl-mixdchlet GEN esl-reformat In file included from /usr/include/stdio.h:906, from esl-reformat.c:6: In function 'fprintf', inlined from 'main' at esl-reformat.c:399:11: /usr/include/bits/stdio2.h:79:10: warning: 'mapfp' may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ esl-reformat.c: In function 'main': esl-reformat.c:304:20: note: 'mapfp' was declared here 304 | FILE *mapfp; /* output stream for the map file */ | ^~~~~ esl-reformat.c:212:13: warning: 'reached_eof' may be used uninitialized [-Wmaybe-uninitialized] 212 | if(! reached_eof) esl_fatal("Input file contains >1 alignments, but afa formatted output file can only contain 1"); | ^ esl-reformat.c:103:10: note: 'reached_eof' was declared here 103 | int reached_eof; /* reached EOF? used only in small mem mode */ | ^~~~~~~~~~~ GEN esl-selectn GEN esl-seqrange GEN esl-seqstat GEN esl-sfetch GEN esl-shuffle GEN esl-ssdraw esl-ssdraw.c: In function 'get_insert_info_from_ifile.constprop.0': esl-ssdraw.c:6664:32: warning: 'rfpos' may be used uninitialized [-Wmaybe-uninitialized] 6664 | if(! seen_end_of_model_line) esl_fatal("Error reading insert file, didn't read the special '//' line at the end of file %s.\n", rfpos, efp->linenumber, ifile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ esl-ssdraw.c:6500:19: note: 'rfpos' was declared here 6500 | int rfpos; /* current nongap RF position */ | ^~~~~ GEN esl-translate esl-ssdraw.c: In function 'parse_template_file.isra.0': esl-ssdraw.c:2717:34: warning: 'ps' may be used uninitialized [-Wmaybe-uninitialized] 2717 | else { free_sspostscript(ps); } | ^~~~~~~~~~~~~~~~~~~~~ esl-ssdraw.c:2703:19: note: 'ps' was declared here 2703 | SSPostscript_t *ps; | ^~ GEN esl-weight CC cmd_alistat.o In function 'alistat_oneline', inlined from 'esl_cmd_alistat' at cmd_alistat.c:45:37: cmd_alistat.c:140:35: warning: 'nres' may be used uninitialized [-Wmaybe-uninitialized] 140 | ratio = (float) recsize / (float) nres; | ^~~~~~~~~~~~ cmd_alistat.c: In function 'esl_cmd_alistat': cmd_alistat.c:63:40: note: 'nres' was declared here 63 | int64_t rlen, smallest, largest, nres; | ^~~~ CC cmd_downsample.o CC cmd_filter.o CC cmd_index.o GEN easel SUBDIR libdivsufsort CC divsufsort.o AR libdivsufsort.a SUBDIR src CC alimask.o CC build.o alimask.c: In function 'main': alimask.c:313:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 313 | if (puts("Must specify mask range with --modelrange, --alirange, --model2ali, or --ali2model\n") < 0) ESL_XEXCEPTION_SYS(eslEWRITE, "write failed"); goto ERROR; | ^~ alimask.c:313:154: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 313 | if (puts("Must specify mask range with --modelrange, --alirange, --model2ali, or --ali2model\n") < 0) ESL_XEXCEPTION_SYS(eslEWRITE, "write failed"); goto ERROR; | ^~~~ CC cachedb.o CC cachedb_shard.o CC emit.o CC errors.o CC evalues.o CC eweight.o CC generic_decoding.o CC generic_fwdback.o CC generic_fwdback_chk.o CC generic_fwdback_banded.o CC generic_null2.o CC generic_msv.o CC generic_optacc.o CC generic_stotrace.o generic_stotrace.c: In function 'p7_GStochasticTrace': generic_stotrace.c:172:21: warning: 'scur' may be used uninitialized [-Wmaybe-uninitialized] 172 | if ((status = p7_trace_Append(tr, scur, k, i)) != eslOK) goto ERROR; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ generic_stotrace.c:57:11: note: 'scur' was declared here 57 | int scur, sprv; | ^~~~ CC generic_viterbi.o CC generic_vtrace.o CC h2_io.o CC heatmap.o CC hmmlogo.o CC hmmdmstr.o CC hmmdmstr_shard.o In function 'process_ServerCmd', inlined from 'clientside_loop' at hmmdmstr.c:1134:5: hmmdmstr.c:1020:24: warning: array subscript 'struct HMMD_COMMAND[0]' is partly outside array bounds of 'unsigned char[12]' [-Warray-bounds] 1020 | cmd->hdr.command = HMMD_CMD_SHUTDOWN; hmmdmstr.c:1017:18: note: object of size 12 allocated by 'malloc' 1017 | if ((cmd = malloc(sizeof(HMMD_HEADER))) == NULL) LOG_FATAL_MSG("malloc", errno); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ hmmdmstr.c:1046:3: warning: array subscript 'struct HMMD_COMMAND[0]' is partly outside array bounds of 'unsigned char[12]' [-Warray-bounds] 1046 | printf("Queuing command %d from %s (%d)\n", cmd->hdr.command, parms->ip_addr, parms->sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hmmdmstr.c:1017:18: note: object of size 12 allocated by 'malloc' 1017 | if ((cmd = malloc(sizeof(HMMD_HEADER))) == NULL) LOG_FATAL_MSG("malloc", errno); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'process_ServerCmd', inlined from 'clientside_loop' at hmmdmstr_shard.c:1173:5: hmmdmstr_shard.c:1059:24: warning: array subscript 'struct HMMD_COMMAND_SHARD[0]' is partly outside array bounds of 'unsigned char[12]' [-Warray-bounds] 1059 | cmd->hdr.command = HMMD_CMD_SHUTDOWN; hmmdmstr_shard.c:1056:18: note: object of size 12 allocated by 'malloc' 1056 | if ((cmd = malloc(sizeof(HMMD_HEADER))) == NULL) LOG_FATAL_MSG("malloc", errno); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ hmmdmstr_shard.c:1085:3: warning: array subscript 'struct HMMD_COMMAND_SHARD[0]' is partly outside array bounds of 'unsigned char[12]' [-Warray-bounds] 1085 | printf("Queuing command %d from %s (%d)\n", cmd->hdr.command, parms->ip_addr, parms->sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hmmdmstr_shard.c:1056:18: note: object of size 12 allocated by 'malloc' 1056 | if ((cmd = malloc(sizeof(HMMD_HEADER))) == NULL) LOG_FATAL_MSG("malloc", errno); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:535, from hmmdmstr.c:10: In function 'memset', inlined from 'destroy_worker' at hmmdmstr.c:948:5, inlined from 'update_workers.part.0' at hmmdmstr.c:285:7: /usr/include/bits/string_fortified.h:59:10: warning: argument 1 null where non-null expected [-Wnonnull] 59 | return __builtin___memset_chk (__dest, __ch, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/bits/string_fortified.h:59:10: note: in a call to built-in function 'memset' In file included from /usr/include/string.h:535, from hmmdmstr_shard.c:10: In function 'memset', inlined from 'destroy_worker' at hmmdmstr_shard.c:987:5, inlined from 'update_workers.part.0' at hmmdmstr_shard.c:306:7: /usr/include/bits/string_fortified.h:59:10: warning: argument 1 null where non-null expected [-Wnonnull] 59 | return __builtin___memset_chk (__dest, __ch, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/bits/string_fortified.h:59:10: note: in a call to built-in function 'memset' CC hmmd_search_status.o CC hmmdwrkr.o CC hmmdwrkr_shard.o CC hmmdutils.o CC hmmer.o CC logsum.o CC modelconfig.o CC modelstats.o CC mpisupport.o CC seqmodel.o CC tracealign.o CC p7_alidisplay.o CC p7_bg.o CC p7_builder.o CC p7_domain.o p7_domain.c: In function 'p7_domain_Serialize': p7_domain.c:191:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 191 | network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc))); // ow, this hurts, but is probably the best way to get the | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ p7_domain.c:198:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 198 | network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ p7_domain.c:203:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 203 | network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ p7_domain.c:208:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 208 | network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~ p7_domain.c:213:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 213 | network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ p7_domain.c:218:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 218 | network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~ p7_domain.c: In function 'p7_domain_Deserialize': p7_domain.c:341:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 341 | ret_obj->envsc = *((float *) &host_32bit); | ~^~~~~~~~~~~~~~~~~~~~~~ p7_domain.c:347:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 347 | ret_obj->domcorrection = *((float *) &host_32bit); | ~^~~~~~~~~~~~~~~~~~~~~~ p7_domain.c:353:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 353 | ret_obj->dombias = *((float *) &host_32bit); | ~^~~~~~~~~~~~~~~~~~~~~~ p7_domain.c:359:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 359 | ret_obj->oasc = *((float *) &host_32bit); | ~^~~~~~~~~~~~~~~~~~~~~~ p7_domain.c:365:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 365 | ret_obj->bitscore = *((float *) &host_32bit); | ~^~~~~~~~~~~~~~~~~~~~~~ p7_domain.c:371:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 371 | ret_obj->lnP = *((double *) &host_64bit); | ~^~~~~~~~~~~~~~~~~~~~~~~ p7_domain.c:398:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 398 | ret_obj->scores_per_pos[i] = *((float *) &host_32bit); | ~^~~~~~~~~~~~~~~~~~~~~~ CC p7_domaindef.o CC p7_gbands.o p7_domaindef.c: In function 'rescore_isolated_domain': p7_domaindef.c:932:5: warning: 'orig_L' may be used uninitialized [-Wmaybe-uninitialized] 932 | p7_oprofile_ReconfigRestLength(om, orig_L); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ p7_domaindef.c:827:18: note: 'orig_L' was declared here 827 | int orig_L; | ^~~~~~ CC p7_gmx.o CC p7_gmxb.o CC p7_gmxchk.o CC p7_hit.o CC p7_hmm.o p7_hit.c: In function 'p7_hit_Serialize': p7_hit.c:226:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 226 | network_64bit = esl_hton64(*((uint64_t *) &(obj->sortkey))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ p7_hit.c:231:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 231 | network_32bit = esl_hton32(*((uint32_t *) &(obj->score))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ p7_hit.c:236:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 236 | network_32bit = esl_hton32(*((uint32_t *) &(obj->pre_score))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ p7_hit.c:241:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 241 | network_32bit = esl_hton32(*((uint32_t *) &(obj->sum_score))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ p7_hit.c:246:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 246 | network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~ p7_hit.c:251:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 251 | network_64bit = esl_hton64(*((uint64_t *) &(obj->pre_lnP))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ p7_hit.c:256:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 256 | network_64bit = esl_hton64(*((uint64_t *) &(obj->sum_lnP))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ p7_hit.c:261:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 261 | network_32bit = esl_hton32(*((uint32_t *) &(obj->nexpected))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ p7_hit.c: In function 'p7_hit_Deserialize': p7_hit.c:408:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 408 | ret_obj->sortkey = *((double *) &host_64bit); | ~^~~~~~~~~~~~~~~~~~~~~~~ p7_hit.c:414:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 414 | ret_obj->score = *((float *) &host_32bit); | ~^~~~~~~~~~~~~~~~~~~~~~ p7_hit.c:420:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 420 | ret_obj->pre_score = *((float *) &host_32bit); | ~^~~~~~~~~~~~~~~~~~~~~~ p7_hit.c:426:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 426 | ret_obj->sum_score = *((float *) &host_32bit); | ~^~~~~~~~~~~~~~~~~~~~~~ p7_hit.c:432:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 432 | ret_obj->lnP = *((double *) &host_64bit); | ~^~~~~~~~~~~~~~~~~~~~~~~ p7_hit.c:438:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 438 | ret_obj->pre_lnP = *((double *) &host_64bit); | ~^~~~~~~~~~~~~~~~~~~~~~~ p7_hit.c:444:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 444 | ret_obj->sum_lnP = *((double *) &host_64bit); | ~^~~~~~~~~~~~~~~~~~~~~~~ p7_hit.c:450:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 450 | ret_obj->nexpected = *((float *) &host_32bit); | ~^~~~~~~~~~~~~~~~~~~~~~ CC p7_hmmcache.o CC p7_hmmd_search_stats.o p7_hmmd_search_stats.c: In function 'p7_hmmd_search_stats_Serialize': p7_hmmd_search_stats.c:89:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 89 | network_64bit = esl_hton64(*((uint64_t *) &(obj->elapsed))); // ow, this hurts, but is probably the best way to get the | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ p7_hmmd_search_stats.c:97:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 97 | network_64bit = esl_hton64(*((uint64_t *) &(obj->user))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~ p7_hmmd_search_stats.c:103:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 103 | network_64bit = esl_hton64(*((uint64_t *) &(obj->sys))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~ p7_hmmd_search_stats.c:109:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 109 | network_64bit = esl_hton64(*((uint64_t *) &(obj->Z))); | ~^~~~~~~~~~~~~~~~~~~~~~~ p7_hmmd_search_stats.c:115:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 115 | network_64bit = esl_hton64(*((uint64_t *) &(obj->domZ))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~ p7_hmmd_search_stats.c: In function 'p7_hmmd_search_stats_Deserialize': p7_hmmd_search_stats.c:256:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 256 | ret_obj->elapsed = *((double *) &host_64bit); | ~^~~~~~~~~~~~~~~~~~~~~~~ p7_hmmd_search_stats.c:262:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 262 | ret_obj->user = *((double *) &host_64bit); | ~^~~~~~~~~~~~~~~~~~~~~~~ p7_hmmd_search_stats.c:268:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 268 | ret_obj->sys = *((double *) &host_64bit); | ~^~~~~~~~~~~~~~~~~~~~~~~ p7_hmmd_search_stats.c:274:18: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 274 | ret_obj->Z = *((double *) &host_64bit); | ~^~~~~~~~~~~~~~~~~~~~~~~ p7_hmmd_search_stats.c:280:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 280 | ret_obj->domZ = *((double *) &host_64bit); | ~^~~~~~~~~~~~~~~~~~~~~~~ CC p7_hmmfile.o CC p7_hmmwindow.o CC p7_pipeline.o CC p7_prior.o CC p7_profile.o CC p7_spensemble.o CC p7_tophits.o p7_spensemble.c: In function 'p7_spensemble_Cluster': p7_spensemble.c:294:25: warning: 'mmax' may be used uninitialized [-Wmaybe-uninitialized] 294 | int imax, jmax, kmax, mmax; | ^~~~ p7_spensemble.c:364:10: warning: 'kmax' may be used uninitialized [-Wmaybe-uninitialized] 364 | if (best_k > kmax) best_k = kmin + esl_vec_IArgMax(sp->epc, kmax-kmin+1); | ^ p7_spensemble.c:294:19: note: 'kmax' was declared here 294 | int imax, jmax, kmax, mmax; | ^~~~ p7_spensemble.c:294:13: warning: 'jmax' may be used uninitialized [-Wmaybe-uninitialized] 294 | int imax, jmax, kmax, mmax; | ^~~~ p7_spensemble.c:344:43: warning: 'imax' may be used uninitialized [-Wmaybe-uninitialized] 344 | cwindow_width = ESL_MAX(ESL_MAX(imax-imin+1, jmax-jmin+1), | ^ p7_spensemble.c:294:7: note: 'imax' was declared here 294 | int imax, jmax, kmax, mmax; | ^~~~ p7_spensemble.c:376:10: warning: 'mmin' may be used uninitialized [-Wmaybe-uninitialized] 376 | if (best_m < mmin) best_m = mmin + esl_vec_IArgMax(sp->epc, mmax-mmin+1); | ^ p7_spensemble.c:293:25: note: 'mmin' was declared here 293 | int imin, jmin, kmin, mmin; | ^~~~ p7_spensemble.c:364:33: warning: 'kmin' may be used uninitialized [-Wmaybe-uninitialized] 364 | if (best_k > kmax) best_k = kmin + esl_vec_IArgMax(sp->epc, kmax-kmin+1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ p7_spensemble.c:293:19: note: 'kmin' was declared here 293 | int imin, jmin, kmin, mmin; | ^~~~ p7_spensemble.c:370:10: warning: 'jmin' may be used uninitialized [-Wmaybe-uninitialized] 370 | if (best_j < jmin) best_j = jmin + esl_vec_IArgMax(sp->epc, jmax-jmin+1); | ^ p7_spensemble.c:293:13: note: 'jmin' was declared here 293 | int imin, jmin, kmin, mmin; | ^~~~ CC p7_trace.o In file included from /usr/include/stdio.h:906, from ../easel/easel.h:22, from p7_tophits.c:16: In function 'fprintf', inlined from 'p7_tophits_Targets' at p7_tophits.c:1142:12: /usr/include/bits/stdio2.h:79:10: warning: 'posw' may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ p7_tophits.c: In function 'p7_tophits_Targets': p7_tophits.c:1068:10: note: 'posw' was declared here 1068 | int posw; | ^~~~ CC p7_scoredata.o CC hmmpgmd2msa.o CC fm_alphabet.o CC fm_general.o CC fm_sse.o CC fm_ssv.o CC hmmalign.o In function 'FM_extendSeed', inlined from 'p7_SSVFM_longlarget' at fm_ssv.c:806:5: fm_ssv.c:697:31: warning: 'max_hit_end' may be used uninitialized [-Wmaybe-uninitialized] 697 | diag->length = max_hit_end - max_hit_start + 1; | ~~~~~~~~~~~~^~~~~~~~~~~~~~~ fm_ssv.c: In function 'p7_SSVFM_longlarget': fm_ssv.c:648:37: note: 'max_hit_end' was declared here 648 | int64_t hit_start, max_hit_start, max_hit_end; | ^~~~~~~~~~~ In function 'FM_extendSeed', inlined from 'p7_SSVFM_longlarget' at fm_ssv.c:806:5: fm_ssv.c:696:32: warning: 'max_hit_start' may be used uninitialized [-Wmaybe-uninitialized] 696 | diag->k = model_start + max_hit_start - 1; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ fm_ssv.c: In function 'p7_SSVFM_longlarget': fm_ssv.c:648:22: note: 'max_hit_start' was declared here 648 | int64_t hit_start, max_hit_start, max_hit_end; | ^~~~~~~~~~~~~ CC hmmbuild.o CC hmmconvert.o CC hmmemit.o CC hmmfetch.o CC hmmpgmd.o CC hmmpgmd_shard.o CC hmmpress.o CC hmmscan.o CC hmmsearch.o CC hmmsim.o CC hmmstat.o In function 'output_result', inlined from 'serial_master' at hmmsim.c:384:11, inlined from 'main' at hmmsim.c:248:7: hmmsim.c:804:52: warning: 'lambda' may be used uninitialized [-Wmaybe-uninitialized] 804 | fprintf(cfg->efp, "%d %g\n", i, cfg->N * esl_gumbel_surv(x, pmu, plambda)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hmmsim.c: In function 'main': hmmsim.c:360:19: note: 'lambda' was declared here 360 | double mu, lambda; | ^~~~~~ In function 'output_result', inlined from 'serial_master' at hmmsim.c:384:11, inlined from 'main' at hmmsim.c:248:7: hmmsim.c:804:52: warning: 'mu' may be used uninitialized [-Wmaybe-uninitialized] 804 | fprintf(cfg->efp, "%d %g\n", i, cfg->N * esl_gumbel_surv(x, pmu, plambda)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hmmsim.c: In function 'main': hmmsim.c:360:15: note: 'mu' was declared here 360 | double mu, lambda; | ^~ CC jackhmmer.o CC phmmer.o CC nhmmer.o CC nhmmscan.o In function 'serial_loop', inlined from 'serial_master' at nhmmer.c:1071:35: nhmmer.c:1386:20: warning: 'dbsq_revcmp' may be used uninitialized [-Wmaybe-uninitialized] 1386 | if (dbsq_revcmp) esl_sq_Destroy(dbsq_revcmp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ nhmmer.c: In function 'serial_master': nhmmer.c:1338:13: note: 'dbsq_revcmp' was declared here 1338 | ESL_SQ *dbsq_revcmp; | ^~~~~~~~~~~ CC makehmmerdb.o CC hmmc2.o CC hmmerfm-exactmatch.o AR libhmmer-src.stamp SUBDIR impl_sse CC decoding.o In file included from /usr/include/stdio.h:906, from ../easel/easel.h:22, from hmmerfm-exactmatch.c:6: In function 'fprintf', inlined from 'output_header' at hmmerfm-exactmatch.c:123:7, inlined from 'main' at hmmerfm-exactmatch.c:303:3: /usr/include/bits/stdio2.h:79:10: warning: 'alph' may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ hmmerfm-exactmatch.c: In function 'main': hmmerfm-exactmatch.c:94:9: note: 'alph' was declared here 94 | char *alph; | ^~~~ CC fwdback.o CC io.o CC ssvfilter.o CC msvfilter.o CC null2.o CC optacc.o In function 'get_postprob', inlined from 'p7_OATrace' at optacc.c:254:18: optacc.c:269:21: warning: 'kmax' may be used uninitialized [-Wmaybe-uninitialized] 269 | int q = (k-1) % Q; /* (q,r) is position of the current DP cell M(i,k) */ | ~~^~~ optacc.c: In function 'p7_OATrace': optacc.c:398:16: note: 'kmax' was declared here 398 | int smax, kmax; | ^~~~ optacc.c:255:21: warning: 'smax' may be used uninitialized [-Wmaybe-uninitialized] 255 | if ((status = p7_trace_AppendWithPP(tr, s1, k, i, postprob)) != eslOK) return status; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ optacc.c:398:10: note: 'smax' was declared here 398 | int smax, kmax; | ^~~~ CC stotrace.o CC vitfilter.o CC p7_omx.o CC p7_oprofile.o CC mpi.o AR libhmmer-impl.stamp GEN alimask GEN hmmalign GEN hmmbuild GEN hmmconvert GEN hmmemit GEN hmmfetch GEN hmmlogo GEN hmmpgmd GEN hmmpgmd_shard GEN hmmpress GEN hmmscan GEN hmmsearch GEN hmmsim GEN hmmstat GEN jackhmmer GEN phmmer GEN nhmmer GEN nhmmscan GEN makehmmerdb GEN hmmc2 GEN hmmerfm-exactmatch SUBDIR profmark CC create-profmark.o CC rocplot.o In file included from /usr/include/stdio.h:906, from create-profmark.c:18: In function 'fprintf', inlined from 'main' at create-profmark.c:258:4: /usr/include/bits/stdio2.h:79:10: warning: 'nfrags' may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ create-profmark.c: In function 'main': create-profmark.c:167:17: note: 'nfrags' was declared here 167 | int nfrags; /* # of fragments removed */ | ^~~~~~ In function 'synthesize_positives', inlined from 'main' at create-profmark.c:253:4: create-profmark.c:536:27: warning: 'j' may be used uninitialized [-Wmaybe-uninitialized] 536 | memcpy(sq->dsq+j+d1n+1, domain2->dsq+1, sizeof(ESL_DSQ) * d2n); | ^ create-profmark.c: In function 'main': create-profmark.c:445:13: note: 'j' was declared here 445 | int i,j; | ^ GEN rocplot GEN create-profmark + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.G6uXUg + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64 ++ dirname /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd hmmer-3.3.2 + rm -rf /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64 + make install DESTDIR=/builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64 SUBDIR easel SUBDIR miniapps SUBDIR libdivsufsort SUBDIR src SUBDIR impl_sse SUBDIR profmark /usr/bin/install -c -d /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin /usr/bin/install -c -d /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/man/man1 make -C src install make[1]: Entering directory '/builddir/build/BUILD/hmmer-3.3.2/src' for file in alimask hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer phmmer nhmmer nhmmscan makehmmerdb; do \ /usr/bin/install -c -m 0755 $file /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/ ;\ done make[1]: Leaving directory '/builddir/build/BUILD/hmmer-3.3.2/src' make -C documentation install make[1]: Entering directory '/builddir/build/BUILD/hmmer-3.3.2/documentation' make -C man install make[2]: Entering directory '/builddir/build/BUILD/hmmer-3.3.2/documentation/man' for file in hmmer hmmalign hmmbuild hmmc2 hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer makehmmerdb phmmer nhmmer nhmmscan alimask; do \ /usr/bin/install -c -m 0664 $file.man /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/man/man1/${file}.1 ;\ done make[2]: Leaving directory '/builddir/build/BUILD/hmmer-3.3.2/documentation/man' make[1]: Leaving directory '/builddir/build/BUILD/hmmer-3.3.2/documentation' + cd easel + make install DESTDIR=/builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64 /usr/bin/install -c -d /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin /usr/bin/install -c -d /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/man/man1 make -C miniapps install make[1]: Entering directory '/builddir/build/BUILD/hmmer-3.3.2/easel/miniapps' /usr/bin/install -c -m 0755 easel /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/ for file in esl-afetch esl-alimanip esl-alimap esl-alimask esl-alimerge esl-alipid esl-alirev esl-alistat esl-compalign esl-compstruct esl-construct esl-histplot esl-mask esl-mixdchlet esl-reformat esl-selectn esl-seqrange esl-seqstat esl-sfetch esl-shuffle esl-ssdraw esl-translate esl-weight; do \ /usr/bin/install -c -m 0755 $file /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/ ;\ done for file in esl-afetch esl-alimanip esl-alimap esl-alimask esl-alimerge esl-alipid esl-alirev esl-alistat esl-compalign esl-compstruct esl-construct esl-histplot esl-mask esl-mixdchlet esl-reformat esl-selectn esl-seqrange esl-seqstat esl-sfetch esl-shuffle esl-ssdraw esl-translate esl-weight; do \ /usr/bin/install -c -m 0644 $file.man /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/man/man1/${file}.1 ;\ done make[1]: Leaving directory '/builddir/build/BUILD/hmmer-3.3.2/easel/miniapps' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 3.3.2-2.fc38 --unique-debug-suffix -3.3.2-2.fc38.x86_64 --unique-debug-src-base hmmer-3.3.2-2.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/hmmer-3.3.2 extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/alimask extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/easel extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-afetch extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-alimanip extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-alimap extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-alimask extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-alimerge extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-alipid extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-alirev extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-alistat extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-compalign extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-compstruct extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-construct extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-histplot extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-mask extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-mixdchlet extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-reformat extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-selectn extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-seqrange extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-seqstat extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-sfetch extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-shuffle extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-ssdraw extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-translate extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-weight extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/hmmalign extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/hmmbuild extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/hmmconvert extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/hmmemit extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/hmmfetch extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/hmmlogo extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/hmmpgmd extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/hmmpgmd_shard extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/hmmpress extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/hmmscan extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/hmmsearch extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/hmmsim extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/hmmstat extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/jackhmmer extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/makehmmerdb extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/nhmmer extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/nhmmscan extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/phmmer original debug info size: 56688kB, size after compression: 47604kB /usr/bin/sepdebugcrcfix: Updated 43 CRC32s, 0 CRC32s did match. 13596 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.qEJ609 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd hmmer-3.3.2 + make check SUBDIR easel GEN easel_utest GEN esl_alloc_utest GEN esl_alphabet_utest GEN esl_bitfield_utest GEN esl_buffer_utest GEN esl_cluster_utest GEN esl_cpu_utest GEN esl_dirichlet_utest In function 'utest_uniformity', inlined from 'main' at ./esl_dirichlet.c:292:3: ./esl_dirichlet.c:257:20: warning: 'prv_logpc' may be used uninitialized [-Wmaybe-uninitialized] 257 | if (i > 0 && esl_DCompare(logpc, prv_logpc, tol) != eslOK) esl_fatal(msg); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./esl_dirichlet.c: In function 'main': ./esl_dirichlet.c:238:18: note: 'prv_logpc' was declared here 238 | double logpc, prv_logpc; | ^~~~~~~~~ In function 'utest_uniformity', inlined from 'main' at ./esl_dirichlet.c:292:3: ./esl_dirichlet.c:253:20: warning: 'prv_logp' may be used uninitialized [-Wmaybe-uninitialized] 253 | if (i > 0 && esl_DCompare(logp, prv_logp, tol) != eslOK) esl_fatal(msg); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./esl_dirichlet.c: In function 'main': ./esl_dirichlet.c:237:18: note: 'prv_logp' was declared here 237 | double logp, prv_logp; | ^~~~~~~~ GEN esl_distance_utest GEN esl_dmatrix_utest GEN esl_dsqdata_utest GEN esl_exponential_utest GEN esl_fileparser_utest GEN esl_gamma_utest GEN esl_gencode_utest GEN esl_getopts_utest In function 'process_longopt', inlined from 'esl_getopts' at ./esl_getopts.c:1371:12, inlined from 'esl_opt_ProcessCmdline' at ./esl_getopts.c:549:20: ./esl_getopts.c:1433:13: warning: 'opti' may be used uninitialized [-Wmaybe-uninitialized] 1433 | if (g->opt[opti].type != eslARG_NONE) | ^ ./esl_getopts.c: In function 'esl_opt_ProcessCmdline': ./esl_getopts.c:1404:9: note: 'opti' was declared here 1404 | int opti; /* option number found */ | ^~~~ GEN esl_graph_utest GEN esl_gumbel_utest GEN esl_heap_utest GEN esl_histogram_utest GEN esl_hmm_utest GEN esl_huffman_utest GEN esl_hyperexp_utest GEN esl_json_utest ./esl_json.c: In function 'esl_json_Validate': ./esl_json.c:752:33: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 752 | case eslJSON_BOOLEAN: if (! esl_memstrcmp(bf->mem + pos1, pos2-pos1+1, "true") && | ^~ ./esl_json.c:753:167: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 753 | ! esl_memstrcmp(bf->mem + pos1, pos2-pos1+1, "false")) ESL_FAIL(eslFAIL, errbuf, "boolean isn't a boolean, tok %d", i); break; | ^~~~~ GEN esl_keyhash_utest In function 'utest_memkeys', inlined from 'main' at ./esl_keyhash.c:876:3: ./esl_keyhash.c:835:62: warning: 'h42' may be used uninitialized [-Wmaybe-uninitialized] 835 | if ( esl_keyhash_Lookup(kh, keys[42], keylen, &h) != eslOK || h != h42) esl_fatal(msg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ./esl_keyhash.c: In function 'main': ./esl_keyhash.c:812:23: note: 'h42' was declared here 812 | int i,h,h42; | ^~~ In function 'utest_stringkeys', inlined from 'main' at ./esl_keyhash.c:875:3: ./esl_keyhash.c:786:54: warning: 'h42' may be used uninitialized [-Wmaybe-uninitialized] 786 | if ( esl_keyhash_Lookup(kh, "XX", -1, &h) != eslOK || h != h42) esl_fatal(msg); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ./esl_keyhash.c: In function 'main': ./esl_keyhash.c:749:25: note: 'h42' was declared here 749 | int i,j,h,h42; | ^~~ GEN esl_matrixops_utest GEN esl_mem_utest GEN esl_minimizer_utest ./esl_minimizer.c: In function 'esl_min_ConjugateGradientDescent': ./esl_minimizer.c:243:23: warning: 'fx' may be used uninitialized [-Wmaybe-uninitialized] 243 | if (opt_fx) *opt_fx = fx; | ~~~~~~~~^~~~ ./esl_minimizer.c:119:10: note: 'fx' was declared here 119 | double fx; | ^~ In function 'brent', inlined from 'esl_min_ConjugateGradientDescent' at ./esl_minimizer.c:192:7: ./esl_minimizer.c:720:21: warning: 'cx' may be used uninitialized [-Wmaybe-uninitialized] 720 | m = 0.5 * (a+b); | ~~^~~ ./esl_minimizer.c: In function 'esl_min_ConjugateGradientDescent': ./esl_minimizer.c:118:16: note: 'cx' was declared here 118 | double ax,bx,cx; | ^~ In function 'brent', inlined from 'esl_min_ConjugateGradientDescent' at ./esl_minimizer.c:192:7: ./esl_minimizer.c:720:21: warning: 'ax' may be used uninitialized [-Wmaybe-uninitialized] 720 | m = 0.5 * (a+b); | ~~^~~ ./esl_minimizer.c: In function 'esl_min_ConjugateGradientDescent': ./esl_minimizer.c:118:10: note: 'ax' was declared here 118 | double ax,bx,cx; | ^~ GEN esl_mixdchlet_utest GEN esl_msa_utest GEN esl_msacluster_utest GEN esl_msafile_utest GEN esl_msafile2_utest GEN esl_msafile_a2m_utest GEN esl_msafile_afa_utest GEN esl_msafile_clustal_utest ./esl_msafile_clustal.c: In function 'esl_msafile_clustal_Read': ./esl_msafile_clustal.c:248:12: warning: 'block_seq_len' may be used uninitialized [-Wmaybe-uninitialized] 248 | if (seq_len != block_seq_len) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence end is misaligned"); | ^ ./esl_msafile_clustal.c:203:30: note: 'block_seq_len' was declared here 203 | esl_pos_t block_seq_start, block_seq_len; | ^~~~~~~~~~~~~ ./esl_msafile_clustal.c:247:12: warning: 'block_seq_start' may be used uninitialized [-Wmaybe-uninitialized] 247 | if (seq_start != block_seq_start) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence start is misaligned"); | ^ ./esl_msafile_clustal.c:203:13: note: 'block_seq_start' was declared here 203 | esl_pos_t block_seq_start, block_seq_len; | ^~~~~~~~~~~~~~~ GEN esl_msafile_phylip_utest In function 'phylip_interleaved_Read', inlined from 'esl_msafile_phylip_Read' at ./esl_msafile_phylip.c:284:56: ./esl_msafile_phylip.c:452:15: warning: 'block_alen' may be used uninitialized [-Wmaybe-uninitialized] 452 | else if (cur_alen - alen != block_alen) ESL_XFAIL(eslEFORMAT, afp->errmsg, "number of residues on line differs from previous seqs in alignment block"); | ^ ./esl_msafile_phylip.c: In function 'esl_msafile_phylip_Read': ./esl_msafile_phylip.c:422:13: note: 'block_alen' was declared here 422 | int64_t block_alen; /* # of residues being added by current block */ | ^~~~~~~~~~ In function 'phylip_check_interleaved', inlined from 'esl_msafile_phylip_CheckFileFormat' at ./esl_msafile_phylip.c:389:13: ./esl_msafile_phylip.c:739:16: warning: 'nres1' may be used uninitialized [-Wmaybe-uninitialized] 739 | if (nres1+nres2 == alen) break; | ~~~~~^~~~~~ ./esl_msafile_phylip.c: In function 'esl_msafile_phylip_CheckFileFormat': ./esl_msafile_phylip.c:687:13: note: 'nres1' was declared here 687 | int nres1; | ^~~~~ ./esl_msafile_phylip.c:683:20: warning: 'ncols0' may be used uninitialized [-Wmaybe-uninitialized] 683 | int ncols, ncols0; | ^~~~~~ GEN esl_msafile_psiblast_utest ./esl_msafile_psiblast.c: In function 'esl_msafile_psiblast_Read': ./esl_msafile_psiblast.c:229:12: warning: 'block_seq_len' may be used uninitialized [-Wmaybe-uninitialized] 229 | if (seq_len != block_seq_len) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence end is misaligned"); | ^ ./esl_msafile_psiblast.c:195:30: note: 'block_seq_len' was declared here 195 | esl_pos_t block_seq_start, block_seq_len; | ^~~~~~~~~~~~~ ./esl_msafile_psiblast.c:228:12: warning: 'block_seq_start' may be used uninitialized [-Wmaybe-uninitialized] 228 | if (seq_start != block_seq_start) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence start is misaligned"); | ^ ./esl_msafile_psiblast.c:195:13: note: 'block_seq_start' was declared here 195 | esl_pos_t block_seq_start, block_seq_len; | ^~~~~~~~~~~~~~~ GEN esl_msafile_selex_utest GEN esl_msafile_stockholm_utest GEN esl_msaweight_utest ./esl_msaweight.c: In function 'esl_msaweight_IDFilter_adv': ./esl_msaweight.c:1035:9: warning: 'conscols_110' may be used uninitialized [-Wmaybe-uninitialized] 1035 | collect_counts(cfg, msa, conscols, ncons, ct, NULL); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./esl_msaweight.c:435:1: note: by argument 3 of type 'const int *' to 'collect_counts.isra.0' declared here 435 | collect_counts(const ESL_MSAWEIGHT_CFG *cfg, const ESL_MSA *msa, const int *conscols, int ncons, int **ct, ESL_MSAWEIGHT_DAT *dat) | ^~~~~~~~~~~~~~ GEN esl_normal_utest GEN esl_quicksort_utest GEN esl_random_utest GEN esl_rand64_utest GEN esl_randomseq_utest GEN esl_ratematrix_utest GEN esl_red_black_utest In function 'esl_red_black_doublekey_linked_list_test', inlined from 'main' at ./esl_red_black.c:702:8: ./esl_red_black.c:563:5: warning: 'prev' may be used uninitialized [-Wmaybe-uninitialized] 563 | if(prev != head_ptr){ | ^ ./esl_red_black.c: In function 'main': ./esl_red_black.c:546:28: note: 'prev' was declared here 546 | ESL_RED_BLACK_DOUBLEKEY *prev; | ^~~~ GEN esl_recorder_utest GEN esl_regexp_utest GEN esl_rootfinder_utest GEN esl_scorematrix_utest GEN esl_sq_utest GEN esl_sqio_utest GEN esl_ssi_utest GEN esl_stack_utest GEN esl_stats_utest GEN esl_stretchexp_utest GEN esl_tree_utest GEN esl_varint_utest ./esl_varint.c: In function 'esl_varint_google_decode': ./esl_varint.c:474:11: warning: 'grp' may be used uninitialized [-Wmaybe-uninitialized] 474 | if (grp & cmask) { status = eslEOD; goto ERROR; } | ~~~~^~~~~~~ ./esl_varint.c:464:12: note: 'grp' was declared here 464 | uint64_t grp; // current k-bit code group | ^~~ GEN esl_vectorops_utest GEN esl_weibull_utest GEN esl_wuss_utest ./esl_wuss.c: In function 'esl_wuss2ct': ./esl_wuss.c:136:10: warning: 'status' may be used uninitialized [-Wmaybe-uninitialized] 136 | return status; | ^~~~~~ ./esl_wuss.c:56:14: note: 'status' was declared here 56 | int status; /* success or failure return status */ | ^~~~~~ GEN esl_sse_utest GEN esl_avx_utest GEN esl_avx512_utest GEN esl_neon_utest GEN esl_vmx_utest SUBDIR miniapps SUBDIR libdivsufsort SUBDIR src SUBDIR impl_sse GEN build_utest GEN generic_fwdback_utest GEN generic_fwdback_chk_utest GEN generic_msv_utest GEN generic_stotrace_utest ./generic_stotrace.c: In function 'p7_GStochasticTrace': ./generic_stotrace.c:172:21: warning: 'scur' may be used uninitialized [-Wmaybe-uninitialized] 172 | if ((status = p7_trace_Append(tr, scur, k, i)) != eslOK) goto ERROR; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./generic_stotrace.c:57:11: note: 'scur' was declared here 57 | int scur, sprv; | ^~~~ GEN generic_viterbi_utest GEN hmmer_utest GEN logsum_utest GEN modelconfig_utest GEN seqmodel_utest GEN p7_alidisplay_utest GEN p7_bg_utest GEN p7_domain_utest ./p7_domain.c: In function 'p7_domain_Serialize': ./p7_domain.c:191:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 191 | network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc))); // ow, this hurts, but is probably the best way to get the | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./p7_domain.c:198:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 198 | network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./p7_domain.c:203:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 203 | network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./p7_domain.c:208:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 208 | network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~ ./p7_domain.c:213:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 213 | network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./p7_domain.c:218:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 218 | network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~ ./p7_domain.c: In function 'p7_domain_Deserialize': ./p7_domain.c:341:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 341 | ret_obj->envsc = *((float *) &host_32bit); | ~^~~~~~~~~~~~~~~~~~~~~~ ./p7_domain.c:347:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 347 | ret_obj->domcorrection = *((float *) &host_32bit); | ~^~~~~~~~~~~~~~~~~~~~~~ ./p7_domain.c:353:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 353 | ret_obj->dombias = *((float *) &host_32bit); | ~^~~~~~~~~~~~~~~~~~~~~~ ./p7_domain.c:359:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 359 | ret_obj->oasc = *((float *) &host_32bit); | ~^~~~~~~~~~~~~~~~~~~~~~ ./p7_domain.c:365:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 365 | ret_obj->bitscore = *((float *) &host_32bit); | ~^~~~~~~~~~~~~~~~~~~~~~ ./p7_domain.c:371:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 371 | ret_obj->lnP = *((double *) &host_64bit); | ~^~~~~~~~~~~~~~~~~~~~~~~ ./p7_domain.c:398:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 398 | ret_obj->scores_per_pos[i] = *((float *) &host_32bit); | ~^~~~~~~~~~~~~~~~~~~~~~ GEN p7_gmx_utest GEN p7_gmxchk_utest GEN p7_hit_utest ./p7_hit.c: In function 'p7_hit_Serialize': ./p7_hit.c:226:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 226 | network_64bit = esl_hton64(*((uint64_t *) &(obj->sortkey))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./p7_hit.c:231:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 231 | network_32bit = esl_hton32(*((uint32_t *) &(obj->score))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./p7_hit.c:236:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 236 | network_32bit = esl_hton32(*((uint32_t *) &(obj->pre_score))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./p7_hit.c:241:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 241 | network_32bit = esl_hton32(*((uint32_t *) &(obj->sum_score))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./p7_hit.c:246:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 246 | network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~ ./p7_hit.c:251:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 251 | network_64bit = esl_hton64(*((uint64_t *) &(obj->pre_lnP))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./p7_hit.c:256:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 256 | network_64bit = esl_hton64(*((uint64_t *) &(obj->sum_lnP))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./p7_hit.c:261:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 261 | network_32bit = esl_hton32(*((uint32_t *) &(obj->nexpected))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./p7_hit.c: In function 'p7_hit_Deserialize': ./p7_hit.c:408:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 408 | ret_obj->sortkey = *((double *) &host_64bit); | ~^~~~~~~~~~~~~~~~~~~~~~~ ./p7_hit.c:414:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 414 | ret_obj->score = *((float *) &host_32bit); | ~^~~~~~~~~~~~~~~~~~~~~~ ./p7_hit.c:420:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 420 | ret_obj->pre_score = *((float *) &host_32bit); | ~^~~~~~~~~~~~~~~~~~~~~~ ./p7_hit.c:426:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 426 | ret_obj->sum_score = *((float *) &host_32bit); | ~^~~~~~~~~~~~~~~~~~~~~~ ./p7_hit.c:432:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 432 | ret_obj->lnP = *((double *) &host_64bit); | ~^~~~~~~~~~~~~~~~~~~~~~~ ./p7_hit.c:438:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 438 | ret_obj->pre_lnP = *((double *) &host_64bit); | ~^~~~~~~~~~~~~~~~~~~~~~~ ./p7_hit.c:444:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 444 | ret_obj->sum_lnP = *((double *) &host_64bit); | ~^~~~~~~~~~~~~~~~~~~~~~~ ./p7_hit.c:450:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 450 | ret_obj->nexpected = *((float *) &host_32bit); | ~^~~~~~~~~~~~~~~~~~~~~~ GEN p7_hmmd_search_stats_utest ./p7_hmmd_search_stats.c: In function 'p7_hmmd_search_stats_Serialize': ./p7_hmmd_search_stats.c:89:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 89 | network_64bit = esl_hton64(*((uint64_t *) &(obj->elapsed))); // ow, this hurts, but is probably the best way to get the | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./p7_hmmd_search_stats.c:97:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 97 | network_64bit = esl_hton64(*((uint64_t *) &(obj->user))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~ ./p7_hmmd_search_stats.c:103:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 103 | network_64bit = esl_hton64(*((uint64_t *) &(obj->sys))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~ ./p7_hmmd_search_stats.c:109:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 109 | network_64bit = esl_hton64(*((uint64_t *) &(obj->Z))); | ~^~~~~~~~~~~~~~~~~~~~~~~ ./p7_hmmd_search_stats.c:115:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 115 | network_64bit = esl_hton64(*((uint64_t *) &(obj->domZ))); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~ ./p7_hmmd_search_stats.c: In function 'p7_hmmd_search_stats_Deserialize': ./p7_hmmd_search_stats.c:256:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 256 | ret_obj->elapsed = *((double *) &host_64bit); | ~^~~~~~~~~~~~~~~~~~~~~~~ ./p7_hmmd_search_stats.c:262:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 262 | ret_obj->user = *((double *) &host_64bit); | ~^~~~~~~~~~~~~~~~~~~~~~~ ./p7_hmmd_search_stats.c:268:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 268 | ret_obj->sys = *((double *) &host_64bit); | ~^~~~~~~~~~~~~~~~~~~~~~~ ./p7_hmmd_search_stats.c:274:18: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 274 | ret_obj->Z = *((double *) &host_64bit); | ~^~~~~~~~~~~~~~~~~~~~~~~ ./p7_hmmd_search_stats.c:280:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 280 | ret_obj->domZ = *((double *) &host_64bit); | ~^~~~~~~~~~~~~~~~~~~~~~~ GEN p7_hmm_utest GEN p7_hmmfile_utest GEN p7_profile_utest GEN p7_tophits_utest In file included from /usr/include/stdio.h:906, from ../easel/easel.h:22, from ./p7_tophits.c:16: In function 'fprintf', inlined from 'p7_tophits_Targets' at ./p7_tophits.c:1142:12: /usr/include/bits/stdio2.h:79:10: warning: 'posw' may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ./p7_tophits.c: In function 'p7_tophits_Targets': ./p7_tophits.c:1068:10: note: 'posw' was declared here 1068 | int posw; | ^~~~ ./p7_tophits.c: In function 'main': ./p7_tophits.c:2171:3: warning: 'key' may be used uninitialized [-Wmaybe-uninitialized] 2171 | p7_tophits_Add(h1, "last", NULL, NULL, -1.0, (float) key, key, (float) key, key, i, i, N, i, i, N, 1, 1, NULL); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./p7_tophits.c:2155:19: note: 'key' was declared here 2155 | double key; | ^~~ GEN p7_trace_utest GEN p7_scoredata_utest GEN hmmpgmd2msa_utest GEN hmmd_search_status_utest CC itest_brute.o GEN itest_brute SUBDIR impl_sse GEN decoding_utest GEN fwdback_utest GEN io_utest GEN msvfilter_utest GEN null2_utest GEN optacc_utest In function 'get_postprob', inlined from 'p7_OATrace' at ./optacc.c:254:18: ./optacc.c:269:21: warning: 'kmax' may be used uninitialized [-Wmaybe-uninitialized] 269 | int q = (k-1) % Q; /* (q,r) is position of the current DP cell M(i,k) */ | ~~^~~ ./optacc.c: In function 'p7_OATrace': ./optacc.c:398:16: note: 'kmax' was declared here 398 | int smax, kmax; | ^~~~ ./optacc.c:255:21: warning: 'smax' may be used uninitialized [-Wmaybe-uninitialized] 255 | if ((status = p7_trace_AppendWithPP(tr, s1, k, i, postprob)) != eslOK) return status; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./optacc.c:398:10: note: 'smax' was declared here 398 | int smax, kmax; | ^~~~ GEN stotrace_utest GEN vitfilter_utest SUBDIR easel SUBDIR miniapps SUBDIR testsuite Running Easel test suite... exercise 1 [ easel-utest] ... ok. exercise 2 [ alloc-utest] ... ok. exercise 3 [ alphabet-utest] ... ok. exercise 4 [ avx-utest] ... ok. exercise 5 [ avx512-utest] ... ok. exercise 6 [ bitfield-utest] ... ok. exercise 7 [ buffer-utest] ... ok. exercise 8 [ cluster-utest] ... ok. exercise 9 [ cpu-utest] ... ok. exercise 10 [ dirichlet-utest] ... ok. exercise 11 [ distance-utest] ... ok. exercise 12 [ dmatrix-utest] ... ok. exercise 13 [ dsqdata-utest] ... ok. exercise 14 [ exponential-utest] ... ok. exercise 15 [ fileparser-utest] ... ok. exercise 16 [ gamma-utest] ... ok. exercise 17 [ gencode-utest] ... ok. exercise 18 [ getopts-utest] ... ok. exercise 19 [ graph-utest] ... ok. exercise 20 [ gumbel-utest] ... ok. exercise 21 [ heap-utest] ... ok. exercise 22 [ histogram-utest] ... ok. exercise 23 [ huffman-utest] ... ok. exercise 24 [ hyperexp-utest] ... ok. exercise 25 [ json-utest] ... ok. exercise 26 [ keyhash-utest] ... ok. exercise 27 [ matrixops-utest] ... ok. exercise 28 [ mem-utest] ... ok. exercise 29 [ minimizer-utest] ... ok. exercise 30 [ mixdchlet-utest] ... ok. exercise 31 [ msa-utest] ... ok. exercise 32 [ msacluster-utest] ... ok. exercise 33 [ msafile] ... ok. exercise 34 [ msafile2] ... ok. exercise 35 [ msafile-a2m] ... ok. exercise 36 [ msafile-afa] ... ok. exercise 37 [ msafile-clustal] ... ok. exercise 38 [ msafile-phylip] ... ok. exercise 39 [ msafile-psiblast] ... ok. exercise 40 [ msafile-selex] ... ok. exercise 41 [ msafile-stockholm] ... ok. exercise 42 [ msaweight-utest] ... ok. exercise 43 [ neon-utest] ... ok. exercise 44 [ normal-utest] ... ok. exercise 45 [ quicksort-utest] ... ok. exercise 46 [ random-utest] ... ok. exercise 47 [ rand64-utest] ... ok. exercise 48 [ randomseq-utest] ... ok. exercise 49 [ ratematrix-utest] ... ok. exercise 50 [ recorder-utest] ... ok. exercise 51 [ red_black-utest] ... ok. exercise 52 [ regexp-utest] ... ok. exercise 53 [ rootfinder-utest] ... ok. exercise 54 [ scorematrix-utest] ... ok. exercise 55 [ sq-utest] ... ok. exercise 56 [ sqio-utest] ... ok. exercise 57 [ sse-utest] ... ok. exercise 58 [ ssi-utest] ... ok. exercise 59 [ stack-utest] ... ok. exercise 60 [ stats-utest] ... ok. exercise 61 [ stretchexp-utest] ... ok. exercise 62 [ tree-utest] ... ok. exercise 63 [ varint-utest] ... ok. exercise 64 [ vectorops-utest] ... ok. exercise 65 [ vmx-utest] ... ok. exercise 66 [ weibull-utest] ... ok. exercise 67 [ wuss-utest] ... ok. exercise 68 [ e2] ... ok. exercise 69 [ degen-residues] ... ok. exercise 70 [ ncbi-indices] ... ok. exercise 71 [ blank-gf] ... ok. exercise 72 [ esl-translate] ... ok. exercise 73 [ esl-afetch] ... ok. exercise 74 [ esl-alimanip] ... ok. exercise 75 [ esl-alimap] ... ok. exercise 76 [ esl-alimask] ... ok. exercise 77 [ esl-alimerge] ... ok. exercise 78 [ esl-alistat] ... ok. exercise 79 [ esl-compalign] ... ok. exercise 80 [ esl-construct] ... ok. exercise 81 [ esl-mask] ... ok. exercise 82 [ esl-seqrange] ... ok. exercise 83 [ esl-shuffle] ... ok. exercise 84 [ esl-ssdraw] ... ok. All 84 exercises at level <= 2 passed. System information: Wed Nov 9 09:47:04 UTC 2022 Linux e3c15d89fbb14c4c981b695ecad33657 5.17.7-200.fc35.x86_64 #1 SMP PREEMPT Thu May 12 14:56:48 UTC 2022 x86_64 GNU/Linux SUBDIR testsuite Running HMMER test suite... exercise 1 [ hmmer] ... ok. exercise 2 [ build] ... ok. exercise 3 [ generic_fwdback] ... ok. exercise 4 [ generic_msv] ... ok. exercise 5 [ generic_stotrace] ... ok. exercise 6 [ generic_viterbi] ... ok. exercise 7 [ hmmd_search_status] ... ok. exercise 8 [ logsum] ... ok. exercise 9 [ modelconfig] ... ok. exercise 10 [ seqmodel] ... ok. exercise 11 [ p7_alidisplay] ... ok. exercise 12 [ p7_bg] ... ok. exercise 13 [ p7_domain] ... ok. exercise 14 [ p7_gmx] ... ok. exercise 15 [ p7_hit] ... ok. exercise 16 [ p7_hmm] ... ok. exercise 17 [ p7_hmmfile] ... ok. exercise 18 [ p7_hmmd_search_stats] ... ok. exercise 19 [ p7_profile] ... ok. exercise 20 [ p7_tophits] ... ok. exercise 21 [ p7_trace] ... ok. exercise 22 [ p7_scoredata] ... ok. exercise 23 [ decoding] ... ok. exercise 24 [ fwdback] ... ok. exercise 25 [ io] ... ok. exercise 26 [ msvfilter] ... ok. exercise 27 [ null2] ... ok. exercise 28 [ optacc] ... ok. exercise 29 [ stotrace] ... ok. exercise 30 [ vitfilter] ... ok. exercise 31 [ hmmpgmd2msa] ... ok. exercise 32 [ hmmalign] ... ok. exercise 33 [ hmmalign/-h] ... ok. exercise 34 [ hmmalign/-o] ... ok. exercise 35 [ hmmalign/--mapali] ... ok. exercise 36 [ hmmalign/--trim] ... ok. exercise 37 [ hmmalign/--amino] ... ok. exercise 38 [ hmmalign/--informat] ... ok. exercise 39 [ hmmalign/--outformat] ... ok. exercise 40 [ hmmbuild] ... ok. exercise 41 [ build/-h] ... ok. exercise 42 [ build/-n] ... ok. exercise 43 [ build/-o] ... ok. exercise 44 [ build/-O] ... ok. exercise 45 [ build/--amino] ... ok. exercise 46 [ build/--dna] ... ok. exercise 47 [ build/--rna] ... ok. exercise 48 [ build/--fast] ... ok. exercise 49 [ build/--hand] ... ok. exercise 50 [ build/--symfrac] ... ok. exercise 51 [ build/--fragthresh] ... ok. exercise 52 [ build/--wpb] ... ok. exercise 53 [ build/--wgsc] ... ok. exercise 54 [ build/--wblosum] ... ok. exercise 55 [ build/--wnone] ... ok. exercise 56 [ build/--wid] ... ok. exercise 57 [ build/--eent] ... ok. exercise 58 [ build/--eclust] ... ok. exercise 59 [ build/--enone] ... ok. exercise 60 [ build/--eset] ... ok. exercise 61 [ build/--ere] ... ok. exercise 62 [ build/--esigma] ... ok. exercise 63 [ build/--eid] ... ok. exercise 64 [ build/--pnone] ... ok. exercise 65 [ build/--plaplace] ... ok. exercise 66 [ build/--EmL] ... ok. exercise 67 [ build/--EmN] ... ok. exercise 68 [ build/--EvL] ... ok. exercise 69 [ build/--EvN] ... ok. exercise 70 [ build/--EfL] ... ok. exercise 71 [ build/--EfN] ... ok. exercise 72 [ build/--Eft] ... ok. exercise 73 [ build/--informat] ... ok. exercise 74 [ build/--seed] ... ok. exercise 75 [ search] ... ok. exercise 76 [ search/-h] ... ok. exercise 77 [ search/-o] ... ok. exercise 78 [ search/-A] ... ok. exercise 79 [ search/--tblout] ... ok. exercise 80 [ search/--domtblout] ... ok. exercise 81 [ search/--pfamtblout] ... ok. exercise 82 [ search/--acc] ... ok. exercise 83 [ search/--noali] ... ok. exercise 84 [ search/--notextw] ... ok. exercise 85 [ search/--textw] ... ok. exercise 86 [ search/-E] ... ok. exercise 87 [ search/-T] ... ok. exercise 88 [ search/--domE] ... ok. exercise 89 [ search/--domT] ... ok. exercise 90 [ search/--incE] ... ok. exercise 91 [ search/--incT] ... ok. exercise 92 [ search/--incdomE] ... ok. exercise 93 [ search/--incdomT] ... ok. exercise 94 [ search/--cut_ga] ... ok. exercise 95 [ search/--cut_nc] ... ok. exercise 96 [ search/--cut_tc] ... ok. exercise 97 [ search/--max] ... ok. exercise 98 [ search/--F1] ... ok. exercise 99 [ search/--F2] ... ok. exercise 100 [ search/--F3] ... ok. exercise 101 [ search/--nobias] ... ok. exercise 102 [ search/--nonull2] ... ok. exercise 103 [ search/-Z] ... ok. exercise 104 [ search/--domZ] ... ok. exercise 105 [ search/--seed] ... ok. exercise 106 [ search/--tformat] ... ok. exercise 107 [ hmmscan] ... ok. exercise 108 [ scan/-h] ... ok. exercise 109 [ scan/-o] ... ok. exercise 110 [ scan/--tblout] ... ok. exercise 111 [ scan/--domtblout] ... ok. exercise 112 [ scan/--pfamtblout] ... ok. exercise 113 [ scan/--acc] ... ok. exercise 114 [ scan/--noali] ... ok. exercise 115 [ scan/--notextw] ... ok. exercise 116 [ scan/--textw] ... ok. exercise 117 [ scan/-E] ... ok. exercise 118 [ scan/-T] ... ok. exercise 119 [ scan/--domE] ... ok. exercise 120 [ scan/--domT] ... ok. exercise 121 [ scan/--incE] ... ok. exercise 122 [ scan/--incT] ... ok. exercise 123 [ scan/--incdomE] ... ok. exercise 124 [ scan/--incdomT] ... ok. exercise 125 [ scan/--incdomT] ... ok. exercise 126 [ scan/--cut_ga] ... ok. exercise 127 [ scan/--cut_nc] ... ok. exercise 128 [ scan/--cut_tc] ... ok. exercise 129 [ scan/--max] ... ok. exercise 130 [ scan/--F1] ... ok. exercise 131 [ scan/--F2] ... ok. exercise 132 [ scan/--F3] ... ok. exercise 133 [ scan/--nobias] ... ok. exercise 134 [ scan/--nonull2] ... ok. exercise 135 [ scan/-Z] ... ok. exercise 136 [ scan/--domZ] ... ok. exercise 137 [ scan/--seed] ... ok. exercise 138 [ scan/--qformat] ... ok. exercise 139 [ scan/--cpu] ... ok. exercise 140 [ jackhmmer] ... ok. exercise 141 [ j/-h] ... ok. exercise 142 [ j/-N] ... ok. exercise 143 [ j/-o] ... ok. exercise 144 [ j/-A] ... ok. exercise 145 [ j/--tblout] ... ok. exercise 146 [ j/--domtblout] ... ok. exercise 147 [ j/--chkhmm] ... ok. exercise 148 [ j/--chkali] ... ok. exercise 149 [ j/--acc] ... ok. exercise 150 [ j/--noali] ... ok. exercise 151 [ j/--notextw] ... ok. exercise 152 [ j/--textw] ... ok. exercise 153 [ j/--popen] ... ok. exercise 154 [ j/--pextend] ... ok. exercise 155 [ j/--mxfile] ... ok. exercise 156 [ j/-E] ... ok. exercise 157 [ j/-T] ... ok. exercise 158 [ j/--domE] ... ok. exercise 159 [ j/--domT] ... ok. exercise 160 [ j/--incE] ... ok. exercise 161 [ j/--incT] ... ok. exercise 162 [ j/--incdomE] ... ok. exercise 163 [ j/--incdomT] ... ok. exercise 164 [ j/--max] ... ok. exercise 165 [ j/--F1] ... ok. exercise 166 [ j/--F2] ... ok. exercise 167 [ j/--F3] ... ok. exercise 168 [ j/--nobias] ... ok. exercise 169 [ j/--EmL] ... ok. exercise 170 [ j/--EmN] ... ok. exercise 171 [ j/--EvL] ... ok. exercise 172 [ j/--EvN] ... ok. exercise 173 [ j/--EfL] ... ok. exercise 174 [ j/--EfN] ... ok. exercise 175 [ j/--Eft] ... ok. exercise 176 [ j/--nonull2] ... ok. exercise 177 [ j/-Z] ... ok. exercise 178 [ j/--domZ] ... ok. exercise 179 [ j/--seed] ... ok. exercise 180 [ j/--qformat] ... ok. exercise 181 [ j/--tformat] ... ok. exercise 182 [ phmmer] ... ok. exercise 183 [ phmmer/-h] ... ok. exercise 184 [ phmmer/-o] ... ok. exercise 185 [ phmmer/-A] ... ok. exercise 186 [ phmmer/--tblout] ... ok. exercise 187 [ phmmer/--domtblout] ... ok. exercise 188 [ phmmer/--pfamtblout] ... ok. exercise 189 [ phmmer/--acc] ... ok. exercise 190 [ phmmer/--noali] ... ok. exercise 191 [ phmmer/--notextw] ... ok. exercise 192 [ phmmer/--textw] ... ok. exercise 193 [ phmmer/--popen] ... ok. exercise 194 [ phmmer/--pextend] ... ok. exercise 195 [ phmmer/--mxfile] ... ok. exercise 196 [ phmmer/-E] ... ok. exercise 197 [ phmmer/-T] ... ok. exercise 198 [ phmmer/--domE] ... ok. exercise 199 [ phmmer/--domT] ... ok. exercise 200 [ phmmer/--incE] ... ok. exercise 201 [ phmmer/--incT] ... ok. exercise 202 [ phmmer/--incdomE] ... ok. exercise 203 [ phmmer/--incdomT] ... ok. exercise 204 [ phmmer/--max] ... ok. exercise 205 [ phmmer/--F1] ... ok. exercise 206 [ phmmer/--F2] ... ok. exercise 207 [ phmmer/--F3] ... ok. exercise 208 [ phmmer/--nobias] ... ok. exercise 209 [ phmmer/--EmL] ... ok. exercise 210 [ phmmer/--EmN] ... ok. exercise 211 [ phmmer/--EvL] ... ok. exercise 212 [ phmmer/--EvN] ... ok. exercise 213 [ phmmer/--EfL] ... ok. exercise 214 [ phmmer/--EfN] ... ok. exercise 215 [ phmmer/--Eft] ... ok. exercise 216 [ phmmer/--nonull2] ... ok. exercise 217 [ phmmer/-Z] ... ok. exercise 218 [ phmmer/--domZ] ... ok. exercise 219 [ phmmer/--seed] ... ok. exercise 220 [ phmmer/--qformat] ... ok. exercise 221 [ phmmer/--tformat] ... ok. exercise 222 [ nhmmer] ... ok. exercise 223 [ nhmmer/-h] ... ok. exercise 224 [ nhmmer/-o] ... ok. exercise 225 [ nhmmer/-A] ... ok. exercise 226 [ nhmmer/--tblout] ... ok. exercise 227 [ nhmmer/--dfamtblout] ... ok. exercise 228 [ nhmmer/--acc] ... ok. exercise 229 [ nhmmer/--noali] ... ok. exercise 230 [ nhmmer/--notextw] ... ok. exercise 231 [ nhmmer/--textw] ... ok. exercise 232 [ nhmmer/-E] ... ok. exercise 233 [ nhmmer/-T] ... ok. exercise 234 [ nhmmer/--incE] ... ok. exercise 235 [ nhmmer/--incT] ... ok. exercise 236 [ nhmmer/--max] ... ok. exercise 237 [ nhmmer/--F1] ... ok. exercise 238 [ nhmmer/--F2] ... ok. exercise 239 [ nhmmer/--F3] ... ok. exercise 240 [ nhmmer/--nobias] ... ok. exercise 241 [ nhmmer/--nonull2] ... ok. exercise 242 [ nhmmer/-Z] ... ok. exercise 243 [ nhmmer/--seed] ... ok. exercise 244 [ nhmmscan] ... ok. exercise 245 [ nhmmscan/-h] ... ok. exercise 246 [ nhmmscan/-o] ... ok. exercise 247 [ nhmmscan/--tblout] ... ok. exercise 248 [nhmmscan/--dfamtblout] ... ok. exercise 249 [ nhmmscan/--acc] ... ok. exercise 250 [ nhmmscan/--noali] ... ok. exercise 251 [ nhmmscan/--notextw] ... ok. exercise 252 [ nhmmscan/--textw] ... ok. exercise 253 [ nhmmscan/-E] ... ok. exercise 254 [ nhmmscan/-T] ... ok. exercise 255 [ nhmmscan/--incE] ... ok. exercise 256 [ nhmmscan/--incT] ... ok. exercise 257 [ nhmmscan/--max] ... ok. exercise 258 [ nhmmscan/--F1] ... ok. exercise 259 [ nhmmscan/--F2] ... ok. exercise 260 [ nhmmscan/--F3] ... ok. exercise 261 [ nhmmscan/--nobias] ... ok. exercise 262 [ nhmmscan/--nonull2] ... ok. exercise 263 [ nhmmscan/-Z] ... ok. exercise 264 [ nhmmscan/--seed] ... ok. exercise 265 [ hmmemit] ... ok. exercise 266 [ hmmemit/-h] ... ok. exercise 267 [ hmmemit/-c] ... ok. exercise 268 [ hmmemit/-o] ... ok. exercise 269 [ hmmemit/-p] ... ok. exercise 270 [ hmmemit/-N] ... ok. exercise 271 [ hmmemit/-L] ... ok. exercise 272 [ hmmemit/--local] ... ok. exercise 273 [ hmmemit/--unilocal] ... ok. exercise 274 [ hmmemit/--glocal] ... ok. exercise 275 [ hmmemit/--uniglocal] ... ok. exercise 276 [ hmmfetch] ... ok. exercise 277 [ hmmstat] ... ok. exercise 278 [ hmmlogo] ... ok. exercise 279 [ hmmconvert] ... ok. exercise 280 [ hmmsim] ... ok. exercise 281 [ hmmbuild_variation] ... ok. exercise 282 [ hmmscan_variation] ... ok. exercise 283 [ hmmsearch_variation] ... ok. exercise 284 [ phmmer_variation] ... ok. exercise 285 [ mapali] ... ok. exercise 286 [ fragments] ... ok. exercise 287 [ nonresidues] ... ok. exercise 288 [ opt-annotation] ... ok. exercise 289 [ dup-names] ... ok. exercise 290 [ mapali-again] ... ok. exercise 291 [ delete-corruption] ... ok. exercise 292 [ msa-integrity] ... ok. exercise 293 [ hmmemit-consensus] ... ok. exercise 294 [ hmmconvert] ... ok. exercise 295 [ stdin_pipes] ... ok. exercise 296 [ nhmmer_generic] ... ok. exercise 297 [ hmmpgmd_ga] ... ok. exercise 298 [ rewind] ... ok. exercise 299 [ hmmpgmd_shard_ga] ... ok. exercise 300 [ bad-fasta] ... ok. exercise 301 [ brute-itest] ... ok. exercise 302 [ hmmpress-itest] ... ok. exercise 303 [ h39] ... ok. exercise 304 [ h45] ... ok. exercise 305 [ h50] ... ok. exercise 306 [ h82] ... ok. exercise 307 [ iss159] ... ok. All 307 exercises at level <= 2 passed. System information: Wed Nov 9 09:47:17 UTC 2022 Linux e3c15d89fbb14c4c981b695ecad33657 5.17.7-200.fc35.x86_64 #1 SMP PREEMPT Thu May 12 14:56:48 UTC 2022 x86_64 GNU/Linux + RPM_EC=0 ++ jobs -p + exit 0 Processing files: hmmer-3.3.2-2.fc38.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.wvj2X5 + umask 022 + cd /builddir/build/BUILD + cd hmmer-3.3.2 + LICENSEDIR=/builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/licenses/hmmer + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/licenses/hmmer + cp -pr LICENSE /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/licenses/hmmer + RPM_EC=0 ++ jobs -p + exit 0 Provides: hmmer = 3.3.2-2.fc38 hmmer(x86-64) = 3.3.2-2.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.2)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) rtld(GNU_HASH) Processing files: hmmer-easel-3.3.2-2.fc38.x86_64 Provides: hmmer-easel = 3.3.2-2.fc38 hmmer-easel(x86-64) = 3.3.2-2.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.2)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) rtld(GNU_HASH) Processing files: hmmer-doc-3.3.2-2.fc38.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.xxpLaD Provides: hmmer-doc = 3.3.2-2.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: hmmer-debugsource-3.3.2-2.fc38.x86_64 Provides: hmmer-debugsource = 3.3.2-2.fc38 hmmer-debugsource(x86-64) = 3.3.2-2.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: hmmer-debuginfo-3.3.2-2.fc38.x86_64 Provides: debuginfo(build-id) = 01c5fea17114f9cb68c12977e5c072c9b1ec8bd8 debuginfo(build-id) = 063f9b73d9a311e2b752850a86819a2ce80de88c debuginfo(build-id) = 20dd8ba0b1fa146f7de2d032d1ef5ad8bb5f1978 debuginfo(build-id) = 2530f2917c318b2a5331d9950e97a5231f27797f debuginfo(build-id) = 25f13e4885136a894a1f9a053eefbb911aa54145 debuginfo(build-id) = 493821b6757dd4f30b82f7bbc2e32df3d2d3a9ad debuginfo(build-id) = 4975e220b4bdda78c40f1109116ffd2fbe176180 debuginfo(build-id) = 4b38fe06af28dbf771af45805351ffc620c90ee6 debuginfo(build-id) = 54b6f7ef278e838ce847939b481454e8cfaf582a debuginfo(build-id) = 62e32c4e2ac4cb787fd177bc3b3def89d71d23cc debuginfo(build-id) = 83efa50e42c71c18b7efcce70b6777d08809bbb4 debuginfo(build-id) = 89e48f80e09f82b469819aa9367c0612a15cdb93 debuginfo(build-id) = 98a1945ed9cebc25c9ecfc302fe6eb89716f2338 debuginfo(build-id) = a7e27e1f465ec9b4e7202957a03f4459967c7c97 debuginfo(build-id) = ab4c846372f6b07cec0e74ef89a9a9f39df8b60b debuginfo(build-id) = b5f1d5af3f1a29273451c45386dcf1cb08f418a2 debuginfo(build-id) = d0c2658e7a874df660cfd79116d801e94d1ddcf6 debuginfo(build-id) = d777cc90efa5d937ef51113acf485ef5640de5e0 debuginfo(build-id) = daabdb1e707884f0eeb311a662654065a56a4b1c hmmer-debuginfo = 3.3.2-2.fc38 hmmer-debuginfo(x86-64) = 3.3.2-2.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: hmmer-debugsource(x86-64) = 3.3.2-2.fc38 Processing files: hmmer-easel-debuginfo-3.3.2-2.fc38.x86_64 Provides: debuginfo(build-id) = 084da86b579ee10f719b2863227bf2ab615e035c debuginfo(build-id) = 11e812fd3e52adc3e46d7d6896e2b25a2ffb31fe debuginfo(build-id) = 2372ee652570de7ab08e461978d136d7daedad03 debuginfo(build-id) = 30172048bf400a3a9f360b9598b275d4a4379feb debuginfo(build-id) = 3222b39968d5875e6bc5453ace215a551bf77e87 debuginfo(build-id) = 4d5e5e779d5946338fbb0ee0c2d66b64cde341a5 debuginfo(build-id) = 573ec72acfec30fe67ac56470844b916da0ac4cc debuginfo(build-id) = 57f0084b1a443de15256c83e51d713fb163ca546 debuginfo(build-id) = 62eba91f748289bfba5f94adfe9b457d40ccdbb0 debuginfo(build-id) = 64715d8e1ac7e5a6becedb49e348847dc5aaa9be debuginfo(build-id) = 70f3a43404dd3c233ba94cabfeab3086a803ab56 debuginfo(build-id) = 71ed72914019a33aacf8c2e8065891d3d520b35c debuginfo(build-id) = 7ac97b8babbd12bdf5516cb3f17c5d716c21313a debuginfo(build-id) = 9220728cc954c3c4584f357fe584ea8c22314cba debuginfo(build-id) = 99d99d6498cba429011ae997925af721811cfd5d debuginfo(build-id) = 9bdb087ef03794cf9c102650840a761378c2bb40 debuginfo(build-id) = 9df04bf982cc1eb21e5819463995b02e78bccd9f debuginfo(build-id) = ade35e6715ec6be83e9faee78bef74656aa54008 debuginfo(build-id) = b61efe1a1fcf2c15591e9656ea4d7ff96d8887d7 debuginfo(build-id) = b646d0dcb62005f72ae1fe73451c728c43ffa221 debuginfo(build-id) = d2d3245da0d01d83be9e2021f67a962a6cde6697 debuginfo(build-id) = dbdeaafdf6065269c45d4cef777bb49e72454271 debuginfo(build-id) = e59079b9027e76edf51787f91aa2ffab882b944e debuginfo(build-id) = eff24c3ff7e0f73078832edadd46106bf689977c hmmer-easel-debuginfo = 3.3.2-2.fc38 hmmer-easel-debuginfo(x86-64) = 3.3.2-2.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: hmmer-debugsource(x86-64) = 3.3.2-2.fc38 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64 + umask 022 + cd /builddir/build/BUILD + cd hmmer-3.3.2 + DOCDIR=/builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/doc/hmmer-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/doc/hmmer-doc + cp -pr LICENSE /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/doc/hmmer-doc + cp -pr README.md /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/doc/hmmer-doc + cp -pr RELEASE-3.3.2.md /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/doc/hmmer-doc + cp -pr Userguide.pdf /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/doc/hmmer-doc + cp -pr tutorial/ /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/doc/hmmer-doc + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/RPMS/hmmer-easel-debuginfo-3.3.2-2.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/hmmer-debugsource-3.3.2-2.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/hmmer-3.3.2-2.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/hmmer-easel-3.3.2-2.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/hmmer-doc-3.3.2-2.fc38.noarch.rpm Wrote: /builddir/build/RPMS/hmmer-debuginfo-3.3.2-2.fc38.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.VQuO7g + umask 022 + cd /builddir/build/BUILD + cd hmmer-3.3.2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.fKueDy + umask 022 + cd /builddir/build/BUILD + rm -rf hmmer-3.3.2 hmmer-3.3.2.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild hmmer-3.3.2-2.fc38.src.rpm Finish: build phase for hmmer-3.3.2-2.fc38.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1667986838.110086/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1667986838.110086/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1667986838.110086/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/hmmer-3.3.2-2.fc38.src.rpm) Config(child) 5 minutes 46 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool