Mock Version: 3.3
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/hmmer.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1667986838.110086/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f91e83d8a30>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._oasneil:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._oasneil:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '3253526feea2434fa5a334ec162275cb', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1667986838.110086/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._oasneil:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/hmmer.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1659312000
Wrote: /builddir/build/SRPMS/hmmer-3.3.2-2.fc38.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target x86_64 --nodeps /builddir/build/SPECS/hmmer.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1667986838.110086/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f91e83d8a30>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._oasneil:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._oasneil:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'e3c15d89fbb14c4c981b695ecad33657', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1667986838.110086/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._oasneil:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target x86_64 --nodeps /builddir/build/SPECS/hmmer.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1659312000
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Iqz5A6
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf hmmer-3.3.2
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/hmmer-3.3.2.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd hmmer-3.3.2
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.t1KHAH
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd hmmer-3.3.2
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2020-11-26 21:19:58.000000000 +0000
+++ ./configure	2022-11-09 09:42:00.923293037 +0000
@@ -1898,7 +1898,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./easel/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./easel/config.sub
++ basename ./easel/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./easel/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './easel/config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./easel/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./easel/config.guess
++ basename ./easel/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./easel/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './easel/config.guess'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./config.sub
++ basename ./config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub
'/usr/lib/rpm/redhat/config.sub' -> './config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./config.guess
++ basename ./config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess
'/usr/lib/rpm/redhat/config.guess' -> './config.guess'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
+ ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info
configure: WARNING: unrecognized options: --disable-dependency-tracking
configure: Configuring HMMER3 for your system.
checking build system type... x86_64-redhat-linux-gnu
checking host system type... x86_64-redhat-linux-gnu
checking whether to compile using MPI... no
checking for x86_64-redhat-linux-gnu-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for gcc option to accept ISO C99... none needed
checking for gcc option to accept ISO Standard C... (cached) none needed
checking how to run the C preprocessor... gcc -E
checking for a BSD-compatible install... /usr/bin/install -c
checking for x86_64-redhat-linux-gnu-strip... no
checking for strip... strip
checking for x86_64-redhat-linux-gnu-ranlib... no
checking for ranlib... ranlib
checking for ar... /usr/bin/ar
checking whether ln -s works... yes
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking whether gcc is Clang... no
checking whether pthreads work with -pthread... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking whether more special flags are required for pthreads... no
checking for PTHREAD_PRIO_INHERIT... yes
checking whether gcc can compile our Altivec/VMX code... no
checking whether gcc can compile our SSE code... yes
configure: Activating Intel/AMD SSE vector DP implementation
checking whether _MM_SET_FLUSH_ZERO_MODE is supported... yes
checking compiler support --start-group... yes
checking for gzip... /usr/bin/gzip
checking for python3... yes
checking for library containing clock_gettime... none required
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking endian.h usability... yes
checking endian.h presence... yes
checking for endian.h... yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/types.h... (cached) yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking for sys/sysctl.h... no
checking for uint8_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking for off_t... yes
checking whether byte ordering is bigendian... no
checking for __attribute__((noreturn))... yes
checking for __attribute__((format))... yes
checking for mkstemp... yes
checking for popen... yes
checking for putenv... yes
checking for strcasecmp... yes
checking for strsep... yes
checking for times... yes
checking for getpid... yes
checking for sysctl... no
checking for sysconf... yes
checking for getcwd... yes
checking for chmod... yes
checking for stat... yes
checking for fstat... yes
checking for erfc... no
checking for library containing ntohs... none required
checking for library containing ntohl... none required
checking for library containing htons... none required
checking for library containing htonl... none required
checking for library containing socket... none required
checking for library containing inet_pton... none required
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating testsuite/Makefile
config.status: creating profmark/Makefile
config.status: creating src/impl_sse/Makefile
config.status: creating documentation/Makefile
config.status: creating documentation/man/Makefile
config.status: creating documentation/userguide/Makefile
config.status: creating documentation/userguide/inclusions/Makefile
config.status: creating libdivsufsort/Makefile
config.status: creating easel/Makefile
config.status: creating easel/miniapps/Makefile
config.status: creating easel/testsuite/Makefile
config.status: creating easel/documentation/Makefile
config.status: creating documentation/userguide/titlepage.tex
config.status: creating documentation/userguide/titlepage_daemon.tex
config.status: creating documentation/userguide/copyright.tex
config.status: creating documentation/man/alimask.man
config.status: creating documentation/man/hmmalign.man
config.status: creating documentation/man/hmmbuild.man
config.status: creating documentation/man/hmmc2.man
config.status: creating documentation/man/hmmconvert.man
config.status: creating documentation/man/hmmemit.man
config.status: creating documentation/man/hmmer.man
config.status: creating documentation/man/hmmfetch.man
config.status: creating documentation/man/hmmlogo.man
config.status: creating documentation/man/hmmpgmd.man
config.status: creating documentation/man/hmmpgmd_shard.man
config.status: creating documentation/man/hmmpress.man
config.status: creating documentation/man/hmmscan.man
config.status: creating documentation/man/hmmsearch.man
config.status: creating documentation/man/hmmsim.man
config.status: creating documentation/man/hmmstat.man
config.status: creating documentation/man/jackhmmer.man
config.status: creating documentation/man/makehmmerdb.man
config.status: creating documentation/man/nhmmer.man
config.status: creating documentation/man/nhmmscan.man
config.status: creating documentation/man/phmmer.man
config.status: creating easel/miniapps/esl-afetch.man
config.status: creating easel/miniapps/esl-alimanip.man
config.status: creating easel/miniapps/esl-alimap.man
config.status: creating easel/miniapps/esl-alimask.man
config.status: creating easel/miniapps/esl-alimerge.man
config.status: creating easel/miniapps/esl-alipid.man
config.status: creating easel/miniapps/esl-alirev.man
config.status: creating easel/miniapps/esl-alistat.man
config.status: creating easel/miniapps/esl-compalign.man
config.status: creating easel/miniapps/esl-compstruct.man
config.status: creating easel/miniapps/esl-construct.man
config.status: creating easel/miniapps/esl-histplot.man
config.status: creating easel/miniapps/esl-mask.man
config.status: creating easel/miniapps/esl-mixdchlet.man
config.status: creating easel/miniapps/esl-reformat.man
config.status: creating easel/miniapps/esl-selectn.man
config.status: creating easel/miniapps/esl-seqrange.man
config.status: creating easel/miniapps/esl-seqstat.man
config.status: creating easel/miniapps/esl-sfetch.man
config.status: creating easel/miniapps/esl-shuffle.man
config.status: creating easel/miniapps/esl-ssdraw.man
config.status: creating easel/miniapps/esl-translate.man
config.status: creating easel/miniapps/esl-weight.man
config.status: creating easel/decoy_config.h
config.status: creating src/p7_config.h
config.status: creating easel/esl_config.h
config.status: creating libdivsufsort/divsufsort.h
config.status: linking src/impl_sse to src/impl
configure: WARNING: unrecognized options: --disable-dependency-tracking
HMMER configuration:
   compiler:             gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection   -pthread 
   host:                 x86_64-redhat-linux-gnu
   linker:               -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes
   libraries:              
   DP implementation:    sse
Now do 'make'  to build HMMER, and optionally:
       'make check'  to run self tests,
       'make install'  to install programs and man pages,
       '(cd easel; make install)'  to install Easel tools.
+ make -j2
     SUBDIR easel
     CC easel.o
     CC esl_alloc.o
     CC esl_alphabet.o
     CC esl_arr2.o
     CC esl_arr3.o
     CC esl_bitfield.o
     CC esl_buffer.o
     CC esl_cluster.o
     CC esl_composition.o
     CC esl_cpu.o
     CC esl_dirichlet.o
     CC esl_distance.o
     CC esl_dmatrix.o
     CC esl_dsqdata.o
     CC esl_exponential.o
     CC esl_fileparser.o
     CC esl_gamma.o
     CC esl_gencode.o
     CC esl_getopts.o
     CC esl_gev.o
In function 'process_longopt',
    inlined from 'esl_getopts' at esl_getopts.c:1371:12,
    inlined from 'esl_opt_ProcessCmdline' at esl_getopts.c:549:20:
esl_getopts.c:1433:13: warning: 'opti' may be used uninitialized [-Wmaybe-uninitialized]
 1433 |   if (g->opt[opti].type != eslARG_NONE)
      |             ^
esl_getopts.c: In function 'esl_opt_ProcessCmdline':
esl_getopts.c:1404:9: note: 'opti' was declared here
 1404 |   int   opti;           /* option number found                               */
      |         ^~~~
     CC esl_graph.o
     CC esl_gumbel.o
     CC esl_heap.o
     CC esl_histogram.o
     CC esl_hmm.o
     CC esl_huffman.o
     CC esl_hyperexp.o
     CC esl_json.o
esl_json.c: In function 'esl_json_Validate':
esl_json.c:752:33: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  752 |           case eslJSON_BOOLEAN: if (! esl_memstrcmp(bf->mem + pos1, pos2-pos1+1, "true")  &&
      |                                 ^~
esl_json.c:753:167: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  753 |                                     ! esl_memstrcmp(bf->mem + pos1, pos2-pos1+1, "false"))   ESL_FAIL(eslFAIL, errbuf, "boolean isn't a boolean, tok %d",         i); break;
      |                                                                                                                                                                       ^~~~~
     CC esl_keyhash.o
     CC esl_matrixops.o
     CC esl_mem.o
     CC esl_minimizer.o
esl_minimizer.c: In function 'esl_min_ConjugateGradientDescent':
esl_minimizer.c:243:23: warning: 'fx' may be used uninitialized [-Wmaybe-uninitialized]
  243 |   if (opt_fx) *opt_fx = fx;
      |               ~~~~~~~~^~~~
esl_minimizer.c:119:10: note: 'fx' was declared here
  119 |   double fx;
      |          ^~
In function 'brent',
    inlined from 'esl_min_ConjugateGradientDescent' at esl_minimizer.c:192:7:
esl_minimizer.c:720:21: warning: 'cx' may be used uninitialized [-Wmaybe-uninitialized]
  720 |       m   = 0.5 * (a+b);
      |                   ~~^~~
esl_minimizer.c: In function 'esl_min_ConjugateGradientDescent':
esl_minimizer.c:118:16: note: 'cx' was declared here
  118 |   double ax,bx,cx;
      |                ^~
In function 'brent',
    inlined from 'esl_min_ConjugateGradientDescent' at esl_minimizer.c:192:7:
esl_minimizer.c:720:21: warning: 'ax' may be used uninitialized [-Wmaybe-uninitialized]
  720 |       m   = 0.5 * (a+b);
      |                   ~~^~~
esl_minimizer.c: In function 'esl_min_ConjugateGradientDescent':
esl_minimizer.c:118:10: note: 'ax' was declared here
  118 |   double ax,bx,cx;
      |          ^~
     CC esl_mixdchlet.o
     CC esl_mixgev.o
     CC esl_mpi.o
     CC esl_msa.o
     CC esl_msacluster.o
     CC esl_msafile.o
     CC esl_msafile2.o
     CC esl_msafile_a2m.o
     CC esl_msafile_afa.o
     CC esl_msafile_clustal.o
esl_msafile_clustal.c: In function 'esl_msafile_clustal_Read':
esl_msafile_clustal.c:248:12: warning: 'block_seq_len' may be used uninitialized [-Wmaybe-uninitialized]
  248 |         if (seq_len   != block_seq_len)   ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence end is misaligned");
      |            ^
esl_msafile_clustal.c:203:30: note: 'block_seq_len' was declared here
  203 |   esl_pos_t block_seq_start, block_seq_len;
      |                              ^~~~~~~~~~~~~
esl_msafile_clustal.c:247:12: warning: 'block_seq_start' may be used uninitialized [-Wmaybe-uninitialized]
  247 |         if (seq_start != block_seq_start) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence start is misaligned");
      |            ^
esl_msafile_clustal.c:203:13: note: 'block_seq_start' was declared here
  203 |   esl_pos_t block_seq_start, block_seq_len;
      |             ^~~~~~~~~~~~~~~
     CC esl_msafile_phylip.o
     CC esl_msafile_psiblast.o
In function 'phylip_interleaved_Read',
    inlined from 'esl_msafile_phylip_Read' at esl_msafile_phylip.c:284:56:
esl_msafile_phylip.c:452:15: warning: 'block_alen' may be used uninitialized [-Wmaybe-uninitialized]
  452 |       else if (cur_alen - alen != block_alen) ESL_XFAIL(eslEFORMAT, afp->errmsg, "number of residues on line differs from previous seqs in alignment block");
      |               ^
esl_msafile_phylip.c: In function 'esl_msafile_phylip_Read':
esl_msafile_phylip.c:422:13: note: 'block_alen' was declared here
  422 |   int64_t   block_alen;         /* # of residues being added by current block */
      |             ^~~~~~~~~~
esl_msafile_psiblast.c: In function 'esl_msafile_psiblast_Read':
esl_msafile_psiblast.c:229:12: warning: 'block_seq_len' may be used uninitialized [-Wmaybe-uninitialized]
  229 |         if (seq_len   != block_seq_len)   ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence end is misaligned");
      |            ^
esl_msafile_psiblast.c:195:30: note: 'block_seq_len' was declared here
  195 |   esl_pos_t block_seq_start, block_seq_len;
      |                              ^~~~~~~~~~~~~
esl_msafile_psiblast.c:228:12: warning: 'block_seq_start' may be used uninitialized [-Wmaybe-uninitialized]
  228 |         if (seq_start != block_seq_start) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence start is misaligned");
      |            ^
esl_msafile_psiblast.c:195:13: note: 'block_seq_start' was declared here
  195 |   esl_pos_t block_seq_start, block_seq_len;
      |             ^~~~~~~~~~~~~~~
In function 'phylip_check_interleaved',
    inlined from 'esl_msafile_phylip_CheckFileFormat' at esl_msafile_phylip.c:389:13:
esl_msafile_phylip.c:739:16: warning: 'nres1' may be used uninitialized [-Wmaybe-uninitialized]
  739 |       if (nres1+nres2 == alen) break;
      |           ~~~~~^~~~~~
esl_msafile_phylip.c: In function 'esl_msafile_phylip_CheckFileFormat':
esl_msafile_phylip.c:687:13: note: 'nres1' was declared here
  687 |   int       nres1;
      |             ^~~~~
esl_msafile_phylip.c:683:20: warning: 'ncols0' may be used uninitialized [-Wmaybe-uninitialized]
  683 |   int       ncols, ncols0;
      |                    ^~~~~~
     CC esl_msafile_selex.o
     CC esl_msafile_stockholm.o
     CC esl_msashuffle.o
     CC esl_msaweight.o
     CC esl_normal.o
     CC esl_paml.o
     CC esl_quicksort.o
     CC esl_random.o
esl_msaweight.c: In function 'esl_msaweight_IDFilter_adv':
esl_msaweight.c:1035:9: warning: 'conscols_110' may be used uninitialized [-Wmaybe-uninitialized]
 1035 |         collect_counts(cfg, msa, conscols, ncons, ct, NULL);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
esl_msaweight.c:435:1: note: by argument 3 of type 'const int *' to 'collect_counts.isra.0' declared here
  435 | collect_counts(const ESL_MSAWEIGHT_CFG *cfg, const ESL_MSA *msa, const int *conscols, int ncons, int **ct, ESL_MSAWEIGHT_DAT *dat)
      | ^~~~~~~~~~~~~~
     CC esl_rand64.o
     CC esl_randomseq.o
     CC esl_ratematrix.o
     CC esl_recorder.o
     CC esl_red_black.o
     CC esl_regexp.o
     CC esl_rootfinder.o
     CC esl_scorematrix.o
     CC esl_sq.o
     CC esl_sqio.o
     CC esl_sqio_ascii.o
     CC esl_sqio_ncbi.o
     CC esl_ssi.o
     CC esl_stack.o
     CC esl_stats.o
     CC esl_stopwatch.o
     CC esl_stretchexp.o
     CC esl_subcmd.o
     CC esl_threads.o
     CC esl_tree.o
     CC esl_varint.o
esl_varint.c: In function 'esl_varint_google_decode':
esl_varint.c:474:11: warning: 'grp' may be used uninitialized [-Wmaybe-uninitialized]
  474 |   if (grp & cmask) { status = eslEOD; goto ERROR; }
      |       ~~~~^~~~~~~
esl_varint.c:464:12: note: 'grp' was declared here
  464 |   uint64_t grp;                     // current k-bit code group
      |            ^~~
     CC esl_vectorops.o
     CC esl_weibull.o
     CC esl_workqueue.o
     CC esl_wuss.o
     CC esl_sse.o
esl_wuss.c: In function 'esl_wuss2ct':
esl_wuss.c:136:10: warning: 'status' may be used uninitialized [-Wmaybe-uninitialized]
  136 |   return status;
      |          ^~~~~~
esl_wuss.c:56:14: note: 'status' was declared here
   56 |   int        status;      /* success or failure return status */
      |              ^~~~~~
     CC esl_avx.o
     CC esl_avx512.o
     CC esl_neon.o
     CC esl_vmx.o
     AR libeasel.a
     SUBDIR miniapps
     GEN esl-alimanip
     GEN esl-afetch
     GEN esl-alimap
     GEN esl-alimask
In function 'mask_based_on_postprobs',
    inlined from 'main' at esl-alimask.c:482:18:
esl-alimask.c:1085:33: warning: 'ppidx_thresh' may be used uninitialized [-Wmaybe-uninitialized]
 1085 |           for(ppidx = 10; ppidx >= ppidx_thresh; ppidx--) {
      |                           ~~~~~~^~~~~~~~~~~~~~~
esl-alimask.c: In function 'main':
esl-alimask.c:1007:7: note: 'ppidx_thresh' was declared here
 1007 |   int ppidx_thresh;
      |       ^~~~~~~~~~~~
     GEN esl-alimerge
esl-alimerge.c: In function 'validate_and_copy_msa_annotation':
esl-alimerge.c:732:7: warning: 'found_tag' may be used uninitialized [-Wmaybe-uninitialized]
  732 |   int found_tag;
      |       ^~~~~~~~~
esl-alimerge.c: In function 'main':
esl-alimerge.c:343:9: warning: 'clen' may be used uninitialized [-Wmaybe-uninitialized]
  343 |         esl_fatal("Error, all alignments must have identical non-gap #=GC RF lengths; expected (RF length of first ali read): %d,\nalignment %d of file %d length is %d (%s))\n", clen, nali_per_file[fi], (fi+1), cur_clen, alifile_list[fi]);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
esl-alimerge.c:118:17: note: 'clen' was declared here
  118 |   int           clen;                          /* consensus length (non-gap #=GC RF length) of all alignments */
      |                 ^~~~
In file included from /usr/include/stdio.h:906,
                 from esl-alimerge.c:26:
In function 'fprintf',
    inlined from 'main' at esl-alimerge.c:366:2:
/usr/include/bits/stdio2.h:79:10: warning: 'namewidth' may be used uninitialized [-Wmaybe-uninitialized]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
esl-alimerge.c: In function 'main':
esl-alimerge.c:136:14: note: 'namewidth' was declared here
  136 |   int        namewidth;                        /* max width of file name         */
      |              ^~~~~~~~~
     GEN esl-alipid
     GEN esl-alirev
     GEN esl-alistat
In file included from /usr/include/stdio.h:906,
                 from esl-alistat.c:6:
In function 'printf',
    inlined from 'main' at esl-alistat.c:294:6:
/usr/include/bits/stdio2.h:86:10: warning: 'large' may be used uninitialized [-Wmaybe-uninitialized]
   86 |   return __printf_chk (__USE_FORTIFY_LEVEL - 1, __fmt, __va_arg_pack ());
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
esl-alistat.c: In function 'main':
esl-alistat.c:74:24: note: 'large' was declared here
   74 |   int64_t       small, large;                  /* smallest, largest sequence      */
      |                        ^~~~~
In function 'printf',
    inlined from 'main' at esl-alistat.c:293:6:
/usr/include/bits/stdio2.h:86:10: warning: 'small' may be used uninitialized [-Wmaybe-uninitialized]
   86 |   return __printf_chk (__USE_FORTIFY_LEVEL - 1, __fmt, __va_arg_pack ());
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
esl-alistat.c: In function 'main':
esl-alistat.c:74:17: note: 'small' was declared here
   74 |   int64_t       small, large;                  /* smallest, largest sequence      */
      |                 ^~~~~
     GEN esl-compalign
esl-compalign.c: In function 'main':
esl-compalign.c:322:45: warning: 'ppidx' may be used uninitialized [-Wmaybe-uninitialized]
  322 |               if(do_post_for_this_rfpos) ptm[ppidx]++;
      |                                             ^
esl-compalign.c:104:7: note: 'ppidx' was declared here
  104 |   int ppidx;           /* index of PP */
      |       ^~~~~
esl-compalign.c:232:13: warning: 'masklen' may be used uninitialized [-Wmaybe-uninitialized]
  232 |             esl_fatal("Length of mask in %s (%d) not equal to non-gap RF len of alignments (%d)\n", esl_opt_GetString(go, "--p-mask"), masklen, rflen);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
esl-compalign.c:90:7: note: 'masklen' was declared here
   90 |   int masklen;
      |       ^~~~~~~
     GEN esl-compstruct
     GEN esl-construct
esl-construct.c: In function 'main':
esl-construct.c:573:24: warning: 'fmin' may be used uninitialized [-Wmaybe-uninitialized]
  573 |         if(do_fmin)  { printf("#\n# <x> determined to be %.3f\n", fthresh); }
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
esl-construct.c:129:9: note: 'fmin' was declared here
  129 |   float fmin;
      |         ^~~~
     GEN esl-histplot
     GEN esl-mask
     GEN esl-mixdchlet
     GEN esl-reformat
In file included from /usr/include/stdio.h:906,
                 from esl-reformat.c:6:
In function 'fprintf',
    inlined from 'main' at esl-reformat.c:399:11:
/usr/include/bits/stdio2.h:79:10: warning: 'mapfp' may be used uninitialized [-Wmaybe-uninitialized]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
esl-reformat.c: In function 'main':
esl-reformat.c:304:20: note: 'mapfp' was declared here
  304 |       FILE        *mapfp;    /* output stream for the map file                       */
      |                    ^~~~~
esl-reformat.c:212:13: warning: 'reached_eof' may be used uninitialized [-Wmaybe-uninitialized]
  212 |           if(! reached_eof) esl_fatal("Input file contains >1 alignments, but afa formatted output file can only contain 1");
      |             ^
esl-reformat.c:103:10: note: 'reached_eof' was declared here
  103 |   int    reached_eof;           /* reached EOF? used only in small mem mode  */
      |          ^~~~~~~~~~~
     GEN esl-selectn
     GEN esl-seqrange
     GEN esl-seqstat
     GEN esl-sfetch
     GEN esl-shuffle
     GEN esl-ssdraw
esl-ssdraw.c: In function 'get_insert_info_from_ifile.constprop.0':
esl-ssdraw.c:6664:32: warning: 'rfpos' may be used uninitialized [-Wmaybe-uninitialized]
 6664 |   if(! seen_end_of_model_line) esl_fatal("Error reading insert file, didn't read the special '//' line at the end of file %s.\n", rfpos, efp->linenumber, ifile);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
esl-ssdraw.c:6500:19: note: 'rfpos' was declared here
 6500 |   int             rfpos; /* current nongap RF position */
      |                   ^~~~~
     GEN esl-translate
esl-ssdraw.c: In function 'parse_template_file.isra.0':
esl-ssdraw.c:2717:34: warning: 'ps' may be used uninitialized [-Wmaybe-uninitialized]
 2717 |     else                       { free_sspostscript(ps); }
      |                                  ^~~~~~~~~~~~~~~~~~~~~
esl-ssdraw.c:2703:19: note: 'ps' was declared here
 2703 |   SSPostscript_t *ps;
      |                   ^~
     GEN esl-weight
     CC cmd_alistat.o
In function 'alistat_oneline',
    inlined from 'esl_cmd_alistat' at cmd_alistat.c:45:37:
cmd_alistat.c:140:35: warning: 'nres' may be used uninitialized [-Wmaybe-uninitialized]
  140 |       ratio   = (float) recsize / (float) nres;
      |                                   ^~~~~~~~~~~~
cmd_alistat.c: In function 'esl_cmd_alistat':
cmd_alistat.c:63:40: note: 'nres' was declared here
   63 |   int64_t     rlen, smallest, largest, nres;
      |                                        ^~~~
     CC cmd_downsample.o
     CC cmd_filter.o
     CC cmd_index.o
     GEN easel
     SUBDIR libdivsufsort
     CC divsufsort.o
     AR libdivsufsort.a
     SUBDIR src
     CC alimask.o
     CC build.o
alimask.c: In function 'main':
alimask.c:313:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  313 |     if (puts("Must specify mask range with --modelrange, --alirange, --model2ali, or --ali2model\n") < 0) ESL_XEXCEPTION_SYS(eslEWRITE, "write failed"); goto ERROR;
      |     ^~
alimask.c:313:154: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  313 |     if (puts("Must specify mask range with --modelrange, --alirange, --model2ali, or --ali2model\n") < 0) ESL_XEXCEPTION_SYS(eslEWRITE, "write failed"); goto ERROR;
      |                                                                                                                                                          ^~~~
     CC cachedb.o
     CC cachedb_shard.o
     CC emit.o
     CC errors.o
     CC evalues.o
     CC eweight.o
     CC generic_decoding.o
     CC generic_fwdback.o
     CC generic_fwdback_chk.o
     CC generic_fwdback_banded.o
     CC generic_null2.o
     CC generic_msv.o
     CC generic_optacc.o
     CC generic_stotrace.o
generic_stotrace.c: In function 'p7_GStochasticTrace':
generic_stotrace.c:172:21: warning: 'scur' may be used uninitialized [-Wmaybe-uninitialized]
  172 |       if ((status = p7_trace_Append(tr, scur, k, i)) != eslOK) goto ERROR;
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
generic_stotrace.c:57:11: note: 'scur' was declared here
   57 |   int     scur, sprv;
      |           ^~~~
     CC generic_viterbi.o
     CC generic_vtrace.o
     CC h2_io.o
     CC heatmap.o
     CC hmmlogo.o
     CC hmmdmstr.o
     CC hmmdmstr_shard.o
In function 'process_ServerCmd',
    inlined from 'clientside_loop' at hmmdmstr.c:1134:5:
hmmdmstr.c:1020:24: warning: array subscript 'struct HMMD_COMMAND[0]' is partly outside array bounds of 'unsigned char[12]' [-Warray-bounds]
 1020 |       cmd->hdr.command = HMMD_CMD_SHUTDOWN;
hmmdmstr.c:1017:18: note: object of size 12 allocated by 'malloc'
 1017 |       if ((cmd = malloc(sizeof(HMMD_HEADER))) == NULL) LOG_FATAL_MSG("malloc", errno);
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~
hmmdmstr.c:1046:3: warning: array subscript 'struct HMMD_COMMAND[0]' is partly outside array bounds of 'unsigned char[12]' [-Warray-bounds]
 1046 |   printf("Queuing command %d from %s (%d)\n", cmd->hdr.command, parms->ip_addr, parms->sock);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hmmdmstr.c:1017:18: note: object of size 12 allocated by 'malloc'
 1017 |       if ((cmd = malloc(sizeof(HMMD_HEADER))) == NULL) LOG_FATAL_MSG("malloc", errno);
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'process_ServerCmd',
    inlined from 'clientside_loop' at hmmdmstr_shard.c:1173:5:
hmmdmstr_shard.c:1059:24: warning: array subscript 'struct HMMD_COMMAND_SHARD[0]' is partly outside array bounds of 'unsigned char[12]' [-Warray-bounds]
 1059 |       cmd->hdr.command = HMMD_CMD_SHUTDOWN;
hmmdmstr_shard.c:1056:18: note: object of size 12 allocated by 'malloc'
 1056 |       if ((cmd = malloc(sizeof(HMMD_HEADER))) == NULL) LOG_FATAL_MSG("malloc", errno);
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~
hmmdmstr_shard.c:1085:3: warning: array subscript 'struct HMMD_COMMAND_SHARD[0]' is partly outside array bounds of 'unsigned char[12]' [-Warray-bounds]
 1085 |   printf("Queuing command %d from %s (%d)\n", cmd->hdr.command, parms->ip_addr, parms->sock);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hmmdmstr_shard.c:1056:18: note: object of size 12 allocated by 'malloc'
 1056 |       if ((cmd = malloc(sizeof(HMMD_HEADER))) == NULL) LOG_FATAL_MSG("malloc", errno);
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:535,
                 from hmmdmstr.c:10:
In function 'memset',
    inlined from 'destroy_worker' at hmmdmstr.c:948:5,
    inlined from 'update_workers.part.0' at hmmdmstr.c:285:7:
/usr/include/bits/string_fortified.h:59:10: warning: argument 1 null where non-null expected [-Wnonnull]
   59 |   return __builtin___memset_chk (__dest, __ch, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   60 |                                  __glibc_objsize0 (__dest));
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/bits/string_fortified.h:59:10: note: in a call to built-in function 'memset'
In file included from /usr/include/string.h:535,
                 from hmmdmstr_shard.c:10:
In function 'memset',
    inlined from 'destroy_worker' at hmmdmstr_shard.c:987:5,
    inlined from 'update_workers.part.0' at hmmdmstr_shard.c:306:7:
/usr/include/bits/string_fortified.h:59:10: warning: argument 1 null where non-null expected [-Wnonnull]
   59 |   return __builtin___memset_chk (__dest, __ch, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   60 |                                  __glibc_objsize0 (__dest));
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/bits/string_fortified.h:59:10: note: in a call to built-in function 'memset'
     CC hmmd_search_status.o
     CC hmmdwrkr.o
     CC hmmdwrkr_shard.o
     CC hmmdutils.o
     CC hmmer.o
     CC logsum.o
     CC modelconfig.o
     CC modelstats.o
     CC mpisupport.o
     CC seqmodel.o
     CC tracealign.o
     CC p7_alidisplay.o
     CC p7_bg.o
     CC p7_builder.o
     CC p7_domain.o
p7_domain.c: In function 'p7_domain_Serialize':
p7_domain.c:191:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  191 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc)));  // ow, this hurts, but is probably the best way to get the
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_domain.c:198:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  198 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_domain.c:203:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  203 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_domain.c:208:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  208 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~
p7_domain.c:213:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  213 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_domain.c:218:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  218 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~
p7_domain.c: In function 'p7_domain_Deserialize':
p7_domain.c:341:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  341 |   ret_obj->envsc = *((float *) &host_32bit);
      |                     ~^~~~~~~~~~~~~~~~~~~~~~
p7_domain.c:347:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  347 |   ret_obj->domcorrection = *((float *) &host_32bit);
      |                             ~^~~~~~~~~~~~~~~~~~~~~~
p7_domain.c:353:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  353 |   ret_obj->dombias = *((float *) &host_32bit);
      |                       ~^~~~~~~~~~~~~~~~~~~~~~
p7_domain.c:359:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  359 |   ret_obj->oasc = *((float *) &host_32bit);
      |                    ~^~~~~~~~~~~~~~~~~~~~~~
p7_domain.c:365:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  365 |   ret_obj->bitscore = *((float *) &host_32bit);
      |                        ~^~~~~~~~~~~~~~~~~~~~~~
p7_domain.c:371:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  371 |   ret_obj->lnP = *((double *) &host_64bit);
      |                   ~^~~~~~~~~~~~~~~~~~~~~~~
p7_domain.c:398:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  398 |       ret_obj->scores_per_pos[i] = *((float *) &host_32bit);
      |                                     ~^~~~~~~~~~~~~~~~~~~~~~
     CC p7_domaindef.o
     CC p7_gbands.o
p7_domaindef.c: In function 'rescore_isolated_domain':
p7_domaindef.c:932:5: warning: 'orig_L' may be used uninitialized [-Wmaybe-uninitialized]
  932 |     p7_oprofile_ReconfigRestLength(om, orig_L);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_domaindef.c:827:18: note: 'orig_L' was declared here
  827 |   int            orig_L;
      |                  ^~~~~~
     CC p7_gmx.o
     CC p7_gmxb.o
     CC p7_gmxchk.o
     CC p7_hit.o
     CC p7_hmm.o
p7_hit.c: In function 'p7_hit_Serialize':
p7_hit.c:226:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  226 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->sortkey)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:231:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  231 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->score)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:236:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  236 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->pre_score)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:241:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  241 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->sum_score)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:246:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  246 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:251:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  251 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->pre_lnP)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:256:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  256 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->sum_lnP)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:261:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  261 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->nexpected)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c: In function 'p7_hit_Deserialize':
p7_hit.c:408:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  408 |   ret_obj->sortkey = *((double *) &host_64bit);
      |                       ~^~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:414:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  414 |   ret_obj->score = *((float *) &host_32bit);
      |                     ~^~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:420:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  420 |   ret_obj->pre_score = *((float *) &host_32bit);
      |                         ~^~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:426:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  426 |   ret_obj->sum_score = *((float *) &host_32bit);
      |                         ~^~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:432:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  432 |   ret_obj->lnP = *((double *) &host_64bit);
      |                   ~^~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:438:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  438 |   ret_obj->pre_lnP = *((double *) &host_64bit);
      |                       ~^~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:444:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  444 |   ret_obj->sum_lnP = *((double *) &host_64bit);
      |                       ~^~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:450:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  450 |   ret_obj->nexpected = *((float *) &host_32bit);
      |                         ~^~~~~~~~~~~~~~~~~~~~~~
     CC p7_hmmcache.o
     CC p7_hmmd_search_stats.o
p7_hmmd_search_stats.c: In function 'p7_hmmd_search_stats_Serialize':
p7_hmmd_search_stats.c:89:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   89 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->elapsed)));  // ow, this hurts, but is probably the best way to get the
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_hmmd_search_stats.c:97:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   97 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->user)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~
p7_hmmd_search_stats.c:103:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  103 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->sys)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~
p7_hmmd_search_stats.c:109:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  109 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->Z)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~
p7_hmmd_search_stats.c:115:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  115 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->domZ)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~
p7_hmmd_search_stats.c: In function 'p7_hmmd_search_stats_Deserialize':
p7_hmmd_search_stats.c:256:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  256 |   ret_obj->elapsed = *((double *) &host_64bit);
      |                       ~^~~~~~~~~~~~~~~~~~~~~~~
p7_hmmd_search_stats.c:262:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  262 |   ret_obj->user = *((double *) &host_64bit);
      |                    ~^~~~~~~~~~~~~~~~~~~~~~~
p7_hmmd_search_stats.c:268:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  268 |   ret_obj->sys = *((double *) &host_64bit);
      |                   ~^~~~~~~~~~~~~~~~~~~~~~~
p7_hmmd_search_stats.c:274:18: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  274 |   ret_obj->Z = *((double *) &host_64bit);
      |                 ~^~~~~~~~~~~~~~~~~~~~~~~
p7_hmmd_search_stats.c:280:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  280 |   ret_obj->domZ = *((double *) &host_64bit);
      |                    ~^~~~~~~~~~~~~~~~~~~~~~~
     CC p7_hmmfile.o
     CC p7_hmmwindow.o
     CC p7_pipeline.o
     CC p7_prior.o
     CC p7_profile.o
     CC p7_spensemble.o
     CC p7_tophits.o
p7_spensemble.c: In function 'p7_spensemble_Cluster':
p7_spensemble.c:294:25: warning: 'mmax' may be used uninitialized [-Wmaybe-uninitialized]
  294 |   int imax, jmax, kmax, mmax;
      |                         ^~~~
p7_spensemble.c:364:10: warning: 'kmax' may be used uninitialized [-Wmaybe-uninitialized]
  364 |       if (best_k > kmax) best_k = kmin + esl_vec_IArgMax(sp->epc, kmax-kmin+1);
      |          ^
p7_spensemble.c:294:19: note: 'kmax' was declared here
  294 |   int imax, jmax, kmax, mmax;
      |                   ^~~~
p7_spensemble.c:294:13: warning: 'jmax' may be used uninitialized [-Wmaybe-uninitialized]
  294 |   int imax, jmax, kmax, mmax;
      |             ^~~~
p7_spensemble.c:344:43: warning: 'imax' may be used uninitialized [-Wmaybe-uninitialized]
  344 |       cwindow_width = ESL_MAX(ESL_MAX(imax-imin+1, jmax-jmin+1),
      |                                           ^
p7_spensemble.c:294:7: note: 'imax' was declared here
  294 |   int imax, jmax, kmax, mmax;
      |       ^~~~
p7_spensemble.c:376:10: warning: 'mmin' may be used uninitialized [-Wmaybe-uninitialized]
  376 |       if (best_m < mmin) best_m = mmin + esl_vec_IArgMax(sp->epc, mmax-mmin+1);
      |          ^
p7_spensemble.c:293:25: note: 'mmin' was declared here
  293 |   int imin, jmin, kmin, mmin;
      |                         ^~~~
p7_spensemble.c:364:33: warning: 'kmin' may be used uninitialized [-Wmaybe-uninitialized]
  364 |       if (best_k > kmax) best_k = kmin + esl_vec_IArgMax(sp->epc, kmax-kmin+1);
      |                          ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_spensemble.c:293:19: note: 'kmin' was declared here
  293 |   int imin, jmin, kmin, mmin;
      |                   ^~~~
p7_spensemble.c:370:10: warning: 'jmin' may be used uninitialized [-Wmaybe-uninitialized]
  370 |       if (best_j < jmin) best_j = jmin + esl_vec_IArgMax(sp->epc, jmax-jmin+1);
      |          ^
p7_spensemble.c:293:13: note: 'jmin' was declared here
  293 |   int imin, jmin, kmin, mmin;
      |             ^~~~
     CC p7_trace.o
In file included from /usr/include/stdio.h:906,
                 from ../easel/easel.h:22,
                 from p7_tophits.c:16:
In function 'fprintf',
    inlined from 'p7_tophits_Targets' at p7_tophits.c:1142:12:
/usr/include/bits/stdio2.h:79:10: warning: 'posw' may be used uninitialized [-Wmaybe-uninitialized]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
p7_tophits.c: In function 'p7_tophits_Targets':
p7_tophits.c:1068:10: note: 'posw' was declared here
 1068 |   int    posw;
      |          ^~~~
     CC p7_scoredata.o
     CC hmmpgmd2msa.o
     CC fm_alphabet.o
     CC fm_general.o
     CC fm_sse.o
     CC fm_ssv.o
     CC hmmalign.o
In function 'FM_extendSeed',
    inlined from 'p7_SSVFM_longlarget' at fm_ssv.c:806:5:
fm_ssv.c:697:31: warning: 'max_hit_end' may be used uninitialized [-Wmaybe-uninitialized]
  697 |   diag->length  = max_hit_end - max_hit_start + 1;
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~
fm_ssv.c: In function 'p7_SSVFM_longlarget':
fm_ssv.c:648:37: note: 'max_hit_end' was declared here
  648 |   int64_t hit_start, max_hit_start, max_hit_end;
      |                                     ^~~~~~~~~~~
In function 'FM_extendSeed',
    inlined from 'p7_SSVFM_longlarget' at fm_ssv.c:806:5:
fm_ssv.c:696:32: warning: 'max_hit_start' may be used uninitialized [-Wmaybe-uninitialized]
  696 |   diag->k       = model_start  + max_hit_start - 1;
      |                   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~
fm_ssv.c: In function 'p7_SSVFM_longlarget':
fm_ssv.c:648:22: note: 'max_hit_start' was declared here
  648 |   int64_t hit_start, max_hit_start, max_hit_end;
      |                      ^~~~~~~~~~~~~
     CC hmmbuild.o
     CC hmmconvert.o
     CC hmmemit.o
     CC hmmfetch.o
     CC hmmpgmd.o
     CC hmmpgmd_shard.o
     CC hmmpress.o
     CC hmmscan.o
     CC hmmsearch.o
     CC hmmsim.o
     CC hmmstat.o
In function 'output_result',
    inlined from 'serial_master' at hmmsim.c:384:11,
    inlined from 'main' at hmmsim.c:248:7:
hmmsim.c:804:52: warning: 'lambda' may be used uninitialized [-Wmaybe-uninitialized]
  804 |           fprintf(cfg->efp, "%d %g\n", i, cfg->N * esl_gumbel_surv(x, pmu, plambda));
      |                                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hmmsim.c: In function 'main':
hmmsim.c:360:19: note: 'lambda' was declared here
  360 |   double      mu, lambda;
      |                   ^~~~~~
In function 'output_result',
    inlined from 'serial_master' at hmmsim.c:384:11,
    inlined from 'main' at hmmsim.c:248:7:
hmmsim.c:804:52: warning: 'mu' may be used uninitialized [-Wmaybe-uninitialized]
  804 |           fprintf(cfg->efp, "%d %g\n", i, cfg->N * esl_gumbel_surv(x, pmu, plambda));
      |                                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hmmsim.c: In function 'main':
hmmsim.c:360:15: note: 'mu' was declared here
  360 |   double      mu, lambda;
      |               ^~
     CC jackhmmer.o
     CC phmmer.o
     CC nhmmer.o
     CC nhmmscan.o
In function 'serial_loop',
    inlined from 'serial_master' at nhmmer.c:1071:35:
nhmmer.c:1386:20: warning: 'dbsq_revcmp' may be used uninitialized [-Wmaybe-uninitialized]
 1386 |   if (dbsq_revcmp) esl_sq_Destroy(dbsq_revcmp);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~
nhmmer.c: In function 'serial_master':
nhmmer.c:1338:13: note: 'dbsq_revcmp' was declared here
 1338 |   ESL_SQ   *dbsq_revcmp;
      |             ^~~~~~~~~~~
     CC makehmmerdb.o
     CC hmmc2.o
     CC hmmerfm-exactmatch.o
     AR libhmmer-src.stamp
     SUBDIR impl_sse
     CC decoding.o
In file included from /usr/include/stdio.h:906,
                 from ../easel/easel.h:22,
                 from hmmerfm-exactmatch.c:6:
In function 'fprintf',
    inlined from 'output_header' at hmmerfm-exactmatch.c:123:7,
    inlined from 'main' at hmmerfm-exactmatch.c:303:3:
/usr/include/bits/stdio2.h:79:10: warning: 'alph' may be used uninitialized [-Wmaybe-uninitialized]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
hmmerfm-exactmatch.c: In function 'main':
hmmerfm-exactmatch.c:94:9: note: 'alph' was declared here
   94 |   char *alph;
      |         ^~~~
     CC fwdback.o
     CC io.o
     CC ssvfilter.o
     CC msvfilter.o
     CC null2.o
     CC optacc.o
In function 'get_postprob',
    inlined from 'p7_OATrace' at optacc.c:254:18:
optacc.c:269:21: warning: 'kmax' may be used uninitialized [-Wmaybe-uninitialized]
  269 |   int     q     = (k-1) % Q;            /* (q,r) is position of the current DP cell M(i,k) */
      |                   ~~^~~
optacc.c: In function 'p7_OATrace':
optacc.c:398:16: note: 'kmax' was declared here
  398 |   int    smax, kmax;
      |                ^~~~
optacc.c:255:21: warning: 'smax' may be used uninitialized [-Wmaybe-uninitialized]
  255 |       if ((status = p7_trace_AppendWithPP(tr, s1, k, i, postprob)) != eslOK) return status;
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
optacc.c:398:10: note: 'smax' was declared here
  398 |   int    smax, kmax;
      |          ^~~~
     CC stotrace.o
     CC vitfilter.o
     CC p7_omx.o
     CC p7_oprofile.o
     CC mpi.o
     AR libhmmer-impl.stamp
     GEN alimask
     GEN hmmalign
     GEN hmmbuild
     GEN hmmconvert
     GEN hmmemit
     GEN hmmfetch
     GEN hmmlogo
     GEN hmmpgmd
     GEN hmmpgmd_shard
     GEN hmmpress
     GEN hmmscan
     GEN hmmsearch
     GEN hmmsim
     GEN hmmstat
     GEN jackhmmer
     GEN phmmer
     GEN nhmmer
     GEN nhmmscan
     GEN makehmmerdb
     GEN hmmc2
     GEN hmmerfm-exactmatch
     SUBDIR profmark
     CC create-profmark.o
     CC rocplot.o
In file included from /usr/include/stdio.h:906,
                 from create-profmark.c:18:
In function 'fprintf',
    inlined from 'main' at create-profmark.c:258:4:
/usr/include/bits/stdio2.h:79:10: warning: 'nfrags' may be used uninitialized [-Wmaybe-uninitialized]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
create-profmark.c: In function 'main':
create-profmark.c:167:17: note: 'nfrags' was declared here
  167 |   int           nfrags;         /* # of fragments removed          */
      |                 ^~~~~~
In function 'synthesize_positives',
    inlined from 'main' at create-profmark.c:253:4:
create-profmark.c:536:27: warning: 'j' may be used uninitialized [-Wmaybe-uninitialized]
  536 |           memcpy(sq->dsq+j+d1n+1, domain2->dsq+1, sizeof(ESL_DSQ) * d2n);
      |                           ^
create-profmark.c: In function 'main':
create-profmark.c:445:13: note: 'j' was declared here
  445 |   int     i,j;
      |             ^
     GEN rocplot
     GEN create-profmark
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.G6uXUg
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64
++ dirname /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd hmmer-3.3.2
+ rm -rf /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64
+ make install DESTDIR=/builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64
     SUBDIR easel
     SUBDIR miniapps
     SUBDIR libdivsufsort
     SUBDIR src
     SUBDIR impl_sse
     SUBDIR profmark
/usr/bin/install -c -d /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin
/usr/bin/install -c -d /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/man/man1
make -C src install
make[1]: Entering directory '/builddir/build/BUILD/hmmer-3.3.2/src'
for file in alimask hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer phmmer nhmmer nhmmscan makehmmerdb; do \
   /usr/bin/install -c -m 0755 $file /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/ ;\
done
make[1]: Leaving directory '/builddir/build/BUILD/hmmer-3.3.2/src'
make -C documentation install
make[1]: Entering directory '/builddir/build/BUILD/hmmer-3.3.2/documentation'
make -C man install
make[2]: Entering directory '/builddir/build/BUILD/hmmer-3.3.2/documentation/man'
for file in hmmer hmmalign hmmbuild hmmc2 hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer makehmmerdb phmmer nhmmer nhmmscan alimask; do \
   /usr/bin/install -c -m 0664 $file.man /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/man/man1/${file}.1 ;\
done
make[2]: Leaving directory '/builddir/build/BUILD/hmmer-3.3.2/documentation/man'
make[1]: Leaving directory '/builddir/build/BUILD/hmmer-3.3.2/documentation'
+ cd easel
+ make install DESTDIR=/builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64
/usr/bin/install -c -d /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin
/usr/bin/install -c -d /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/man/man1
make -C miniapps install
make[1]: Entering directory '/builddir/build/BUILD/hmmer-3.3.2/easel/miniapps'
/usr/bin/install -c -m 0755 easel /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/
for file in esl-afetch esl-alimanip esl-alimap esl-alimask esl-alimerge esl-alipid esl-alirev esl-alistat esl-compalign esl-compstruct esl-construct esl-histplot esl-mask esl-mixdchlet esl-reformat esl-selectn esl-seqrange esl-seqstat esl-sfetch esl-shuffle esl-ssdraw esl-translate esl-weight; do \
   /usr/bin/install -c -m 0755 $file /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/ ;\
done
for file in esl-afetch esl-alimanip esl-alimap esl-alimask esl-alimerge esl-alipid esl-alirev esl-alistat esl-compalign esl-compstruct esl-construct esl-histplot esl-mask esl-mixdchlet esl-reformat esl-selectn esl-seqrange esl-seqstat esl-sfetch esl-shuffle esl-ssdraw esl-translate esl-weight; do \
   /usr/bin/install -c -m 0644 $file.man /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/man/man1/${file}.1 ;\
done
make[1]: Leaving directory '/builddir/build/BUILD/hmmer-3.3.2/easel/miniapps'
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 3.3.2-2.fc38 --unique-debug-suffix -3.3.2-2.fc38.x86_64 --unique-debug-src-base hmmer-3.3.2-2.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/hmmer-3.3.2
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/alimask
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/easel
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/esl-afetch
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extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/hmmbuild
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/hmmconvert
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/hmmemit
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/hmmfetch
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/hmmlogo
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/hmmpgmd
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/hmmpgmd_shard
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/hmmpress
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/hmmscan
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/hmmsearch
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extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/jackhmmer
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/makehmmerdb
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/nhmmer
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/nhmmscan
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/bin/phmmer
original debug info size: 56688kB, size after compression: 47604kB
/usr/bin/sepdebugcrcfix: Updated 43 CRC32s, 0 CRC32s did match.
13596 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.qEJ609
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd hmmer-3.3.2
+ make check
     SUBDIR easel
     GEN easel_utest
     GEN esl_alloc_utest
     GEN esl_alphabet_utest
     GEN esl_bitfield_utest
     GEN esl_buffer_utest
     GEN esl_cluster_utest
     GEN esl_cpu_utest
     GEN esl_dirichlet_utest
In function 'utest_uniformity',
    inlined from 'main' at ./esl_dirichlet.c:292:3:
./esl_dirichlet.c:257:20: warning: 'prv_logpc' may be used uninitialized [-Wmaybe-uninitialized]
  257 |       if (i > 0 && esl_DCompare(logpc, prv_logpc, tol) != eslOK) esl_fatal(msg);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./esl_dirichlet.c: In function 'main':
./esl_dirichlet.c:238:18: note: 'prv_logpc' was declared here
  238 |   double logpc,  prv_logpc;
      |                  ^~~~~~~~~
In function 'utest_uniformity',
    inlined from 'main' at ./esl_dirichlet.c:292:3:
./esl_dirichlet.c:253:20: warning: 'prv_logp' may be used uninitialized [-Wmaybe-uninitialized]
  253 |       if (i > 0 && esl_DCompare(logp, prv_logp, tol) != eslOK) esl_fatal(msg);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./esl_dirichlet.c: In function 'main':
./esl_dirichlet.c:237:18: note: 'prv_logp' was declared here
  237 |   double logp,   prv_logp;
      |                  ^~~~~~~~
     GEN esl_distance_utest
     GEN esl_dmatrix_utest
     GEN esl_dsqdata_utest
     GEN esl_exponential_utest
     GEN esl_fileparser_utest
     GEN esl_gamma_utest
     GEN esl_gencode_utest
     GEN esl_getopts_utest
In function 'process_longopt',
    inlined from 'esl_getopts' at ./esl_getopts.c:1371:12,
    inlined from 'esl_opt_ProcessCmdline' at ./esl_getopts.c:549:20:
./esl_getopts.c:1433:13: warning: 'opti' may be used uninitialized [-Wmaybe-uninitialized]
 1433 |   if (g->opt[opti].type != eslARG_NONE)
      |             ^
./esl_getopts.c: In function 'esl_opt_ProcessCmdline':
./esl_getopts.c:1404:9: note: 'opti' was declared here
 1404 |   int   opti;           /* option number found                               */
      |         ^~~~
     GEN esl_graph_utest
     GEN esl_gumbel_utest
     GEN esl_heap_utest
     GEN esl_histogram_utest
     GEN esl_hmm_utest
     GEN esl_huffman_utest
     GEN esl_hyperexp_utest
     GEN esl_json_utest
./esl_json.c: In function 'esl_json_Validate':
./esl_json.c:752:33: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  752 |           case eslJSON_BOOLEAN: if (! esl_memstrcmp(bf->mem + pos1, pos2-pos1+1, "true")  &&
      |                                 ^~
./esl_json.c:753:167: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  753 |                                     ! esl_memstrcmp(bf->mem + pos1, pos2-pos1+1, "false"))   ESL_FAIL(eslFAIL, errbuf, "boolean isn't a boolean, tok %d",         i); break;
      |                                                                                                                                                                       ^~~~~
     GEN esl_keyhash_utest
In function 'utest_memkeys',
    inlined from 'main' at ./esl_keyhash.c:876:3:
./esl_keyhash.c:835:62: warning: 'h42' may be used uninitialized [-Wmaybe-uninitialized]
  835 |   if ( esl_keyhash_Lookup(kh, keys[42], keylen, &h) != eslOK || h != h42) esl_fatal(msg);
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
./esl_keyhash.c: In function 'main':
./esl_keyhash.c:812:23: note: 'h42' was declared here
  812 |   int             i,h,h42;
      |                       ^~~
In function 'utest_stringkeys',
    inlined from 'main' at ./esl_keyhash.c:875:3:
./esl_keyhash.c:786:54: warning: 'h42' may be used uninitialized [-Wmaybe-uninitialized]
  786 |   if ( esl_keyhash_Lookup(kh, "XX", -1, &h) != eslOK || h != h42) esl_fatal(msg);
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
./esl_keyhash.c: In function 'main':
./esl_keyhash.c:749:25: note: 'h42' was declared here
  749 |   int             i,j,h,h42;
      |                         ^~~
     GEN esl_matrixops_utest
     GEN esl_mem_utest
     GEN esl_minimizer_utest
./esl_minimizer.c: In function 'esl_min_ConjugateGradientDescent':
./esl_minimizer.c:243:23: warning: 'fx' may be used uninitialized [-Wmaybe-uninitialized]
  243 |   if (opt_fx) *opt_fx = fx;
      |               ~~~~~~~~^~~~
./esl_minimizer.c:119:10: note: 'fx' was declared here
  119 |   double fx;
      |          ^~
In function 'brent',
    inlined from 'esl_min_ConjugateGradientDescent' at ./esl_minimizer.c:192:7:
./esl_minimizer.c:720:21: warning: 'cx' may be used uninitialized [-Wmaybe-uninitialized]
  720 |       m   = 0.5 * (a+b);
      |                   ~~^~~
./esl_minimizer.c: In function 'esl_min_ConjugateGradientDescent':
./esl_minimizer.c:118:16: note: 'cx' was declared here
  118 |   double ax,bx,cx;
      |                ^~
In function 'brent',
    inlined from 'esl_min_ConjugateGradientDescent' at ./esl_minimizer.c:192:7:
./esl_minimizer.c:720:21: warning: 'ax' may be used uninitialized [-Wmaybe-uninitialized]
  720 |       m   = 0.5 * (a+b);
      |                   ~~^~~
./esl_minimizer.c: In function 'esl_min_ConjugateGradientDescent':
./esl_minimizer.c:118:10: note: 'ax' was declared here
  118 |   double ax,bx,cx;
      |          ^~
     GEN esl_mixdchlet_utest
     GEN esl_msa_utest
     GEN esl_msacluster_utest
     GEN esl_msafile_utest
     GEN esl_msafile2_utest
     GEN esl_msafile_a2m_utest
     GEN esl_msafile_afa_utest
     GEN esl_msafile_clustal_utest
./esl_msafile_clustal.c: In function 'esl_msafile_clustal_Read':
./esl_msafile_clustal.c:248:12: warning: 'block_seq_len' may be used uninitialized [-Wmaybe-uninitialized]
  248 |         if (seq_len   != block_seq_len)   ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence end is misaligned");
      |            ^
./esl_msafile_clustal.c:203:30: note: 'block_seq_len' was declared here
  203 |   esl_pos_t block_seq_start, block_seq_len;
      |                              ^~~~~~~~~~~~~
./esl_msafile_clustal.c:247:12: warning: 'block_seq_start' may be used uninitialized [-Wmaybe-uninitialized]
  247 |         if (seq_start != block_seq_start) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence start is misaligned");
      |            ^
./esl_msafile_clustal.c:203:13: note: 'block_seq_start' was declared here
  203 |   esl_pos_t block_seq_start, block_seq_len;
      |             ^~~~~~~~~~~~~~~
     GEN esl_msafile_phylip_utest
In function 'phylip_interleaved_Read',
    inlined from 'esl_msafile_phylip_Read' at ./esl_msafile_phylip.c:284:56:
./esl_msafile_phylip.c:452:15: warning: 'block_alen' may be used uninitialized [-Wmaybe-uninitialized]
  452 |       else if (cur_alen - alen != block_alen) ESL_XFAIL(eslEFORMAT, afp->errmsg, "number of residues on line differs from previous seqs in alignment block");
      |               ^
./esl_msafile_phylip.c: In function 'esl_msafile_phylip_Read':
./esl_msafile_phylip.c:422:13: note: 'block_alen' was declared here
  422 |   int64_t   block_alen;         /* # of residues being added by current block */
      |             ^~~~~~~~~~
In function 'phylip_check_interleaved',
    inlined from 'esl_msafile_phylip_CheckFileFormat' at ./esl_msafile_phylip.c:389:13:
./esl_msafile_phylip.c:739:16: warning: 'nres1' may be used uninitialized [-Wmaybe-uninitialized]
  739 |       if (nres1+nres2 == alen) break;
      |           ~~~~~^~~~~~
./esl_msafile_phylip.c: In function 'esl_msafile_phylip_CheckFileFormat':
./esl_msafile_phylip.c:687:13: note: 'nres1' was declared here
  687 |   int       nres1;
      |             ^~~~~
./esl_msafile_phylip.c:683:20: warning: 'ncols0' may be used uninitialized [-Wmaybe-uninitialized]
  683 |   int       ncols, ncols0;
      |                    ^~~~~~
     GEN esl_msafile_psiblast_utest
./esl_msafile_psiblast.c: In function 'esl_msafile_psiblast_Read':
./esl_msafile_psiblast.c:229:12: warning: 'block_seq_len' may be used uninitialized [-Wmaybe-uninitialized]
  229 |         if (seq_len   != block_seq_len)   ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence end is misaligned");
      |            ^
./esl_msafile_psiblast.c:195:30: note: 'block_seq_len' was declared here
  195 |   esl_pos_t block_seq_start, block_seq_len;
      |                              ^~~~~~~~~~~~~
./esl_msafile_psiblast.c:228:12: warning: 'block_seq_start' may be used uninitialized [-Wmaybe-uninitialized]
  228 |         if (seq_start != block_seq_start) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence start is misaligned");
      |            ^
./esl_msafile_psiblast.c:195:13: note: 'block_seq_start' was declared here
  195 |   esl_pos_t block_seq_start, block_seq_len;
      |             ^~~~~~~~~~~~~~~
     GEN esl_msafile_selex_utest
     GEN esl_msafile_stockholm_utest
     GEN esl_msaweight_utest
./esl_msaweight.c: In function 'esl_msaweight_IDFilter_adv':
./esl_msaweight.c:1035:9: warning: 'conscols_110' may be used uninitialized [-Wmaybe-uninitialized]
 1035 |         collect_counts(cfg, msa, conscols, ncons, ct, NULL);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./esl_msaweight.c:435:1: note: by argument 3 of type 'const int *' to 'collect_counts.isra.0' declared here
  435 | collect_counts(const ESL_MSAWEIGHT_CFG *cfg, const ESL_MSA *msa, const int *conscols, int ncons, int **ct, ESL_MSAWEIGHT_DAT *dat)
      | ^~~~~~~~~~~~~~
     GEN esl_normal_utest
     GEN esl_quicksort_utest
     GEN esl_random_utest
     GEN esl_rand64_utest
     GEN esl_randomseq_utest
     GEN esl_ratematrix_utest
     GEN esl_red_black_utest
In function 'esl_red_black_doublekey_linked_list_test',
    inlined from 'main' at ./esl_red_black.c:702:8:
./esl_red_black.c:563:5: warning: 'prev' may be used uninitialized [-Wmaybe-uninitialized]
  563 |   if(prev != head_ptr){
      |     ^
./esl_red_black.c: In function 'main':
./esl_red_black.c:546:28: note: 'prev' was declared here
  546 |   ESL_RED_BLACK_DOUBLEKEY *prev;
      |                            ^~~~
     GEN esl_recorder_utest
     GEN esl_regexp_utest
     GEN esl_rootfinder_utest
     GEN esl_scorematrix_utest
     GEN esl_sq_utest
     GEN esl_sqio_utest
     GEN esl_ssi_utest
     GEN esl_stack_utest
     GEN esl_stats_utest
     GEN esl_stretchexp_utest
     GEN esl_tree_utest
     GEN esl_varint_utest
./esl_varint.c: In function 'esl_varint_google_decode':
./esl_varint.c:474:11: warning: 'grp' may be used uninitialized [-Wmaybe-uninitialized]
  474 |   if (grp & cmask) { status = eslEOD; goto ERROR; }
      |       ~~~~^~~~~~~
./esl_varint.c:464:12: note: 'grp' was declared here
  464 |   uint64_t grp;                     // current k-bit code group
      |            ^~~
     GEN esl_vectorops_utest
     GEN esl_weibull_utest
     GEN esl_wuss_utest
./esl_wuss.c: In function 'esl_wuss2ct':
./esl_wuss.c:136:10: warning: 'status' may be used uninitialized [-Wmaybe-uninitialized]
  136 |   return status;
      |          ^~~~~~
./esl_wuss.c:56:14: note: 'status' was declared here
   56 |   int        status;      /* success or failure return status */
      |              ^~~~~~
     GEN esl_sse_utest
     GEN esl_avx_utest
     GEN esl_avx512_utest
     GEN esl_neon_utest
     GEN esl_vmx_utest
     SUBDIR miniapps
     SUBDIR libdivsufsort
     SUBDIR src
     SUBDIR impl_sse
     GEN build_utest
     GEN generic_fwdback_utest
     GEN generic_fwdback_chk_utest
     GEN generic_msv_utest
     GEN generic_stotrace_utest
./generic_stotrace.c: In function 'p7_GStochasticTrace':
./generic_stotrace.c:172:21: warning: 'scur' may be used uninitialized [-Wmaybe-uninitialized]
  172 |       if ((status = p7_trace_Append(tr, scur, k, i)) != eslOK) goto ERROR;
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./generic_stotrace.c:57:11: note: 'scur' was declared here
   57 |   int     scur, sprv;
      |           ^~~~
     GEN generic_viterbi_utest
     GEN hmmer_utest
     GEN logsum_utest
     GEN modelconfig_utest
     GEN seqmodel_utest
     GEN p7_alidisplay_utest
     GEN p7_bg_utest
     GEN p7_domain_utest
./p7_domain.c: In function 'p7_domain_Serialize':
./p7_domain.c:191:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  191 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc)));  // ow, this hurts, but is probably the best way to get the
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c:198:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  198 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c:203:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  203 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c:208:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  208 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c:213:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  213 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c:218:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  218 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c: In function 'p7_domain_Deserialize':
./p7_domain.c:341:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  341 |   ret_obj->envsc = *((float *) &host_32bit);
      |                     ~^~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c:347:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  347 |   ret_obj->domcorrection = *((float *) &host_32bit);
      |                             ~^~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c:353:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  353 |   ret_obj->dombias = *((float *) &host_32bit);
      |                       ~^~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c:359:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  359 |   ret_obj->oasc = *((float *) &host_32bit);
      |                    ~^~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c:365:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  365 |   ret_obj->bitscore = *((float *) &host_32bit);
      |                        ~^~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c:371:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  371 |   ret_obj->lnP = *((double *) &host_64bit);
      |                   ~^~~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c:398:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  398 |       ret_obj->scores_per_pos[i] = *((float *) &host_32bit);
      |                                     ~^~~~~~~~~~~~~~~~~~~~~~
     GEN p7_gmx_utest
     GEN p7_gmxchk_utest
     GEN p7_hit_utest
./p7_hit.c: In function 'p7_hit_Serialize':
./p7_hit.c:226:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  226 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->sortkey)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:231:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  231 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->score)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:236:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  236 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->pre_score)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:241:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  241 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->sum_score)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:246:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  246 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:251:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  251 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->pre_lnP)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:256:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  256 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->sum_lnP)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:261:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  261 |   network_32bit = esl_hton32(*((uint32_t *) &(obj->nexpected)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c: In function 'p7_hit_Deserialize':
./p7_hit.c:408:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  408 |   ret_obj->sortkey = *((double *) &host_64bit);
      |                       ~^~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:414:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  414 |   ret_obj->score = *((float *) &host_32bit);
      |                     ~^~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:420:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  420 |   ret_obj->pre_score = *((float *) &host_32bit);
      |                         ~^~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:426:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  426 |   ret_obj->sum_score = *((float *) &host_32bit);
      |                         ~^~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:432:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  432 |   ret_obj->lnP = *((double *) &host_64bit);
      |                   ~^~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:438:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  438 |   ret_obj->pre_lnP = *((double *) &host_64bit);
      |                       ~^~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:444:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  444 |   ret_obj->sum_lnP = *((double *) &host_64bit);
      |                       ~^~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:450:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  450 |   ret_obj->nexpected = *((float *) &host_32bit);
      |                         ~^~~~~~~~~~~~~~~~~~~~~~
     GEN p7_hmmd_search_stats_utest
./p7_hmmd_search_stats.c: In function 'p7_hmmd_search_stats_Serialize':
./p7_hmmd_search_stats.c:89:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   89 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->elapsed)));  // ow, this hurts, but is probably the best way to get the
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hmmd_search_stats.c:97:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   97 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->user)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hmmd_search_stats.c:103:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  103 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->sys)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hmmd_search_stats.c:109:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  109 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->Z)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~
./p7_hmmd_search_stats.c:115:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  115 |   network_64bit = esl_hton64(*((uint64_t *) &(obj->domZ)));
      |                               ~^~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hmmd_search_stats.c: In function 'p7_hmmd_search_stats_Deserialize':
./p7_hmmd_search_stats.c:256:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  256 |   ret_obj->elapsed = *((double *) &host_64bit);
      |                       ~^~~~~~~~~~~~~~~~~~~~~~~
./p7_hmmd_search_stats.c:262:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  262 |   ret_obj->user = *((double *) &host_64bit);
      |                    ~^~~~~~~~~~~~~~~~~~~~~~~
./p7_hmmd_search_stats.c:268:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  268 |   ret_obj->sys = *((double *) &host_64bit);
      |                   ~^~~~~~~~~~~~~~~~~~~~~~~
./p7_hmmd_search_stats.c:274:18: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  274 |   ret_obj->Z = *((double *) &host_64bit);
      |                 ~^~~~~~~~~~~~~~~~~~~~~~~
./p7_hmmd_search_stats.c:280:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  280 |   ret_obj->domZ = *((double *) &host_64bit);
      |                    ~^~~~~~~~~~~~~~~~~~~~~~~
     GEN p7_hmm_utest
     GEN p7_hmmfile_utest
     GEN p7_profile_utest
     GEN p7_tophits_utest
In file included from /usr/include/stdio.h:906,
                 from ../easel/easel.h:22,
                 from ./p7_tophits.c:16:
In function 'fprintf',
    inlined from 'p7_tophits_Targets' at ./p7_tophits.c:1142:12:
/usr/include/bits/stdio2.h:79:10: warning: 'posw' may be used uninitialized [-Wmaybe-uninitialized]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
./p7_tophits.c: In function 'p7_tophits_Targets':
./p7_tophits.c:1068:10: note: 'posw' was declared here
 1068 |   int    posw;
      |          ^~~~
./p7_tophits.c: In function 'main':
./p7_tophits.c:2171:3: warning: 'key' may be used uninitialized [-Wmaybe-uninitialized]
 2171 |   p7_tophits_Add(h1, "last",  NULL, NULL, -1.0, (float) key, key, (float) key, key, i, i, N, i, i, N, 1, 1, NULL);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_tophits.c:2155:19: note: 'key' was declared here
 2155 |   double          key;
      |                   ^~~
     GEN p7_trace_utest
     GEN p7_scoredata_utest
     GEN hmmpgmd2msa_utest
     GEN hmmd_search_status_utest
     CC itest_brute.o
     GEN itest_brute
     SUBDIR impl_sse
     GEN decoding_utest
     GEN fwdback_utest
     GEN io_utest
     GEN msvfilter_utest
     GEN null2_utest
     GEN optacc_utest
In function 'get_postprob',
    inlined from 'p7_OATrace' at ./optacc.c:254:18:
./optacc.c:269:21: warning: 'kmax' may be used uninitialized [-Wmaybe-uninitialized]
  269 |   int     q     = (k-1) % Q;            /* (q,r) is position of the current DP cell M(i,k) */
      |                   ~~^~~
./optacc.c: In function 'p7_OATrace':
./optacc.c:398:16: note: 'kmax' was declared here
  398 |   int    smax, kmax;
      |                ^~~~
./optacc.c:255:21: warning: 'smax' may be used uninitialized [-Wmaybe-uninitialized]
  255 |       if ((status = p7_trace_AppendWithPP(tr, s1, k, i, postprob)) != eslOK) return status;
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./optacc.c:398:10: note: 'smax' was declared here
  398 |   int    smax, kmax;
      |          ^~~~
     GEN stotrace_utest
     GEN vitfilter_utest
     SUBDIR easel
     SUBDIR miniapps
     SUBDIR testsuite
Running Easel test suite...
    exercise    1 [          easel-utest] ...     ok.
    exercise    2 [          alloc-utest] ...     ok.
    exercise    3 [       alphabet-utest] ...     ok.
    exercise    4 [            avx-utest] ...     ok.
    exercise    5 [         avx512-utest] ...     ok.
    exercise    6 [       bitfield-utest] ...     ok.
    exercise    7 [         buffer-utest] ...     ok.
    exercise    8 [        cluster-utest] ...     ok.
    exercise    9 [            cpu-utest] ...     ok.
    exercise   10 [      dirichlet-utest] ...     ok.
    exercise   11 [       distance-utest] ...     ok.
    exercise   12 [        dmatrix-utest] ...     ok.
    exercise   13 [        dsqdata-utest] ...     ok.
    exercise   14 [    exponential-utest] ...     ok.
    exercise   15 [     fileparser-utest] ...     ok.
    exercise   16 [          gamma-utest] ...     ok.
    exercise   17 [        gencode-utest] ...     ok.
    exercise   18 [        getopts-utest] ...     ok.
    exercise   19 [          graph-utest] ...     ok.
    exercise   20 [         gumbel-utest] ...     ok.
    exercise   21 [           heap-utest] ...     ok.
    exercise   22 [      histogram-utest] ...     ok.
    exercise   23 [        huffman-utest] ...     ok.
    exercise   24 [       hyperexp-utest] ...     ok.
    exercise   25 [           json-utest] ...     ok.
    exercise   26 [        keyhash-utest] ...     ok.
    exercise   27 [      matrixops-utest] ...     ok.
    exercise   28 [            mem-utest] ...     ok.
    exercise   29 [      minimizer-utest] ...     ok.
    exercise   30 [      mixdchlet-utest] ...     ok.
    exercise   31 [            msa-utest] ...     ok.
    exercise   32 [     msacluster-utest] ...     ok.
    exercise   33 [              msafile] ...     ok.
    exercise   34 [             msafile2] ...     ok.
    exercise   35 [          msafile-a2m] ...     ok.
    exercise   36 [          msafile-afa] ...     ok.
    exercise   37 [      msafile-clustal] ...     ok.
    exercise   38 [       msafile-phylip] ...     ok.
    exercise   39 [     msafile-psiblast] ...     ok.
    exercise   40 [        msafile-selex] ...     ok.
    exercise   41 [    msafile-stockholm] ...     ok.
    exercise   42 [      msaweight-utest] ...     ok.
    exercise   43 [           neon-utest] ...     ok.
    exercise   44 [         normal-utest] ...     ok.
    exercise   45 [      quicksort-utest] ...     ok.
    exercise   46 [         random-utest] ...     ok.
    exercise   47 [         rand64-utest] ...     ok.
    exercise   48 [      randomseq-utest] ...     ok.
    exercise   49 [     ratematrix-utest] ...     ok.
    exercise   50 [       recorder-utest] ...     ok.
    exercise   51 [      red_black-utest] ...     ok.
    exercise   52 [         regexp-utest] ...     ok.
    exercise   53 [     rootfinder-utest] ...     ok.
    exercise   54 [    scorematrix-utest] ...     ok.
    exercise   55 [             sq-utest] ...     ok.
    exercise   56 [           sqio-utest] ...     ok.
    exercise   57 [            sse-utest] ...     ok.
    exercise   58 [            ssi-utest] ...     ok.
    exercise   59 [          stack-utest] ...     ok.
    exercise   60 [          stats-utest] ...     ok.
    exercise   61 [     stretchexp-utest] ...     ok.
    exercise   62 [           tree-utest] ...     ok.
    exercise   63 [         varint-utest] ...     ok.
    exercise   64 [      vectorops-utest] ...     ok.
    exercise   65 [            vmx-utest] ...     ok.
    exercise   66 [        weibull-utest] ...     ok.
    exercise   67 [           wuss-utest] ...     ok.
    exercise   68 [                   e2] ...     ok.
    exercise   69 [       degen-residues] ...     ok.
    exercise   70 [         ncbi-indices] ...     ok.
    exercise   71 [             blank-gf] ...     ok.
    exercise   72 [        esl-translate] ...     ok.
    exercise   73 [           esl-afetch] ...     ok.
    exercise   74 [         esl-alimanip] ...     ok.
    exercise   75 [           esl-alimap] ...     ok.
    exercise   76 [          esl-alimask] ...     ok.
    exercise   77 [         esl-alimerge] ...     ok.
    exercise   78 [          esl-alistat] ...     ok.
    exercise   79 [        esl-compalign] ...     ok.
    exercise   80 [        esl-construct] ...     ok.
    exercise   81 [             esl-mask] ...     ok.
    exercise   82 [         esl-seqrange] ...     ok.
    exercise   83 [          esl-shuffle] ...     ok.
    exercise   84 [           esl-ssdraw] ...     ok.
All 84 exercises at level <= 2 passed.
System information:
Wed Nov  9 09:47:04 UTC 2022
Linux e3c15d89fbb14c4c981b695ecad33657 5.17.7-200.fc35.x86_64 #1 SMP PREEMPT Thu May 12 14:56:48 UTC 2022 x86_64 GNU/Linux
     SUBDIR testsuite
Running HMMER test suite...
    exercise    1 [                hmmer] ...     ok.
    exercise    2 [                build] ...     ok.
    exercise    3 [      generic_fwdback] ...     ok.
    exercise    4 [          generic_msv] ...     ok.
    exercise    5 [     generic_stotrace] ...     ok.
    exercise    6 [      generic_viterbi] ...     ok.
    exercise    7 [   hmmd_search_status] ...     ok.
    exercise    8 [               logsum] ...     ok.
    exercise    9 [          modelconfig] ...     ok.
    exercise   10 [             seqmodel] ...     ok.
    exercise   11 [        p7_alidisplay] ...     ok.
    exercise   12 [                p7_bg] ...     ok.
    exercise   13 [            p7_domain] ...     ok.
    exercise   14 [               p7_gmx] ...     ok.
    exercise   15 [               p7_hit] ...     ok.
    exercise   16 [               p7_hmm] ...     ok.
    exercise   17 [           p7_hmmfile] ...     ok.
    exercise   18 [ p7_hmmd_search_stats] ...     ok.
    exercise   19 [           p7_profile] ...     ok.
    exercise   20 [           p7_tophits] ...     ok.
    exercise   21 [             p7_trace] ...     ok.
    exercise   22 [         p7_scoredata] ...     ok.
    exercise   23 [             decoding] ...     ok.
    exercise   24 [              fwdback] ...     ok.
    exercise   25 [                   io] ...     ok.
    exercise   26 [            msvfilter] ...     ok.
    exercise   27 [                null2] ...     ok.
    exercise   28 [               optacc] ...     ok.
    exercise   29 [             stotrace] ...     ok.
    exercise   30 [            vitfilter] ...     ok.
    exercise   31 [          hmmpgmd2msa] ...     ok.
    exercise   32 [             hmmalign] ...     ok.
    exercise   33 [          hmmalign/-h] ...     ok.
    exercise   34 [          hmmalign/-o] ...     ok.
    exercise   35 [    hmmalign/--mapali] ...     ok.
    exercise   36 [      hmmalign/--trim] ...     ok.
    exercise   37 [     hmmalign/--amino] ...     ok.
    exercise   38 [  hmmalign/--informat] ...     ok.
    exercise   39 [ hmmalign/--outformat] ...     ok.
    exercise   40 [             hmmbuild] ...     ok.
    exercise   41 [             build/-h] ...     ok.
    exercise   42 [             build/-n] ...     ok.
    exercise   43 [             build/-o] ...     ok.
    exercise   44 [             build/-O] ...     ok.
    exercise   45 [        build/--amino] ...     ok.
    exercise   46 [          build/--dna] ...     ok.
    exercise   47 [          build/--rna] ...     ok.
    exercise   48 [         build/--fast] ...     ok.
    exercise   49 [         build/--hand] ...     ok.
    exercise   50 [      build/--symfrac] ...     ok.
    exercise   51 [   build/--fragthresh] ...     ok.
    exercise   52 [          build/--wpb] ...     ok.
    exercise   53 [         build/--wgsc] ...     ok.
    exercise   54 [      build/--wblosum] ...     ok.
    exercise   55 [        build/--wnone] ...     ok.
    exercise   56 [          build/--wid] ...     ok.
    exercise   57 [         build/--eent] ...     ok.
    exercise   58 [       build/--eclust] ...     ok.
    exercise   59 [        build/--enone] ...     ok.
    exercise   60 [         build/--eset] ...     ok.
    exercise   61 [          build/--ere] ...     ok.
    exercise   62 [       build/--esigma] ...     ok.
    exercise   63 [          build/--eid] ...     ok.
    exercise   64 [        build/--pnone] ...     ok.
    exercise   65 [     build/--plaplace] ...     ok.
    exercise   66 [          build/--EmL] ...     ok.
    exercise   67 [          build/--EmN] ...     ok.
    exercise   68 [          build/--EvL] ...     ok.
    exercise   69 [          build/--EvN] ...     ok.
    exercise   70 [          build/--EfL] ...     ok.
    exercise   71 [          build/--EfN] ...     ok.
    exercise   72 [          build/--Eft] ...     ok.
    exercise   73 [     build/--informat] ...     ok.
    exercise   74 [         build/--seed] ...     ok.
    exercise   75 [               search] ...     ok.
    exercise   76 [            search/-h] ...     ok.
    exercise   77 [            search/-o] ...     ok.
    exercise   78 [            search/-A] ...     ok.
    exercise   79 [      search/--tblout] ...     ok.
    exercise   80 [   search/--domtblout] ...     ok.
    exercise   81 [  search/--pfamtblout] ...     ok.
    exercise   82 [         search/--acc] ...     ok.
    exercise   83 [       search/--noali] ...     ok.
    exercise   84 [     search/--notextw] ...     ok.
    exercise   85 [       search/--textw] ...     ok.
    exercise   86 [            search/-E] ...     ok.
    exercise   87 [            search/-T] ...     ok.
    exercise   88 [        search/--domE] ...     ok.
    exercise   89 [        search/--domT] ...     ok.
    exercise   90 [        search/--incE] ...     ok.
    exercise   91 [        search/--incT] ...     ok.
    exercise   92 [     search/--incdomE] ...     ok.
    exercise   93 [     search/--incdomT] ...     ok.
    exercise   94 [      search/--cut_ga] ...     ok.
    exercise   95 [      search/--cut_nc] ...     ok.
    exercise   96 [      search/--cut_tc] ...     ok.
    exercise   97 [         search/--max] ...     ok.
    exercise   98 [          search/--F1] ...     ok.
    exercise   99 [          search/--F2] ...     ok.
    exercise  100 [          search/--F3] ...     ok.
    exercise  101 [      search/--nobias] ...     ok.
    exercise  102 [     search/--nonull2] ...     ok.
    exercise  103 [            search/-Z] ...     ok.
    exercise  104 [        search/--domZ] ...     ok.
    exercise  105 [        search/--seed] ...     ok.
    exercise  106 [     search/--tformat] ...     ok.
    exercise  107 [              hmmscan] ...     ok.
    exercise  108 [              scan/-h] ...     ok.
    exercise  109 [              scan/-o] ...     ok.
    exercise  110 [        scan/--tblout] ...     ok.
    exercise  111 [     scan/--domtblout] ...     ok.
    exercise  112 [    scan/--pfamtblout] ...     ok.
    exercise  113 [           scan/--acc] ...     ok.
    exercise  114 [         scan/--noali] ...     ok.
    exercise  115 [       scan/--notextw] ...     ok.
    exercise  116 [         scan/--textw] ...     ok.
    exercise  117 [              scan/-E] ...     ok.
    exercise  118 [              scan/-T] ...     ok.
    exercise  119 [          scan/--domE] ...     ok.
    exercise  120 [          scan/--domT] ...     ok.
    exercise  121 [          scan/--incE] ...     ok.
    exercise  122 [          scan/--incT] ...     ok.
    exercise  123 [       scan/--incdomE] ...     ok.
    exercise  124 [       scan/--incdomT] ...     ok.
    exercise  125 [       scan/--incdomT] ...     ok.
    exercise  126 [        scan/--cut_ga] ...     ok.
    exercise  127 [        scan/--cut_nc] ...     ok.
    exercise  128 [        scan/--cut_tc] ...     ok.
    exercise  129 [           scan/--max] ...     ok.
    exercise  130 [            scan/--F1] ...     ok.
    exercise  131 [            scan/--F2] ...     ok.
    exercise  132 [            scan/--F3] ...     ok.
    exercise  133 [        scan/--nobias] ...     ok.
    exercise  134 [       scan/--nonull2] ...     ok.
    exercise  135 [              scan/-Z] ...     ok.
    exercise  136 [          scan/--domZ] ...     ok.
    exercise  137 [          scan/--seed] ...     ok.
    exercise  138 [       scan/--qformat] ...     ok.
    exercise  139 [           scan/--cpu] ...     ok.
    exercise  140 [            jackhmmer] ...     ok.
    exercise  141 [                 j/-h] ...     ok.
    exercise  142 [                 j/-N] ...     ok.
    exercise  143 [                 j/-o] ...     ok.
    exercise  144 [                 j/-A] ...     ok.
    exercise  145 [           j/--tblout] ...     ok.
    exercise  146 [        j/--domtblout] ...     ok.
    exercise  147 [           j/--chkhmm] ...     ok.
    exercise  148 [           j/--chkali] ...     ok.
    exercise  149 [              j/--acc] ...     ok.
    exercise  150 [            j/--noali] ...     ok.
    exercise  151 [          j/--notextw] ...     ok.
    exercise  152 [            j/--textw] ...     ok.
    exercise  153 [            j/--popen] ...     ok.
    exercise  154 [          j/--pextend] ...     ok.
    exercise  155 [           j/--mxfile] ...     ok.
    exercise  156 [                 j/-E] ...     ok.
    exercise  157 [                 j/-T] ...     ok.
    exercise  158 [             j/--domE] ...     ok.
    exercise  159 [             j/--domT] ...     ok.
    exercise  160 [             j/--incE] ...     ok.
    exercise  161 [             j/--incT] ...     ok.
    exercise  162 [          j/--incdomE] ...     ok.
    exercise  163 [          j/--incdomT] ...     ok.
    exercise  164 [              j/--max] ...     ok.
    exercise  165 [               j/--F1] ...     ok.
    exercise  166 [               j/--F2] ...     ok.
    exercise  167 [               j/--F3] ...     ok.
    exercise  168 [           j/--nobias] ...     ok.
    exercise  169 [              j/--EmL] ...     ok.
    exercise  170 [              j/--EmN] ...     ok.
    exercise  171 [              j/--EvL] ...     ok.
    exercise  172 [              j/--EvN] ...     ok.
    exercise  173 [              j/--EfL] ...     ok.
    exercise  174 [              j/--EfN] ...     ok.
    exercise  175 [              j/--Eft] ...     ok.
    exercise  176 [          j/--nonull2] ...     ok.
    exercise  177 [                 j/-Z] ...     ok.
    exercise  178 [             j/--domZ] ...     ok.
    exercise  179 [             j/--seed] ...     ok.
    exercise  180 [          j/--qformat] ...     ok.
    exercise  181 [          j/--tformat] ...     ok.
    exercise  182 [               phmmer] ...     ok.
    exercise  183 [            phmmer/-h] ...     ok.
    exercise  184 [            phmmer/-o] ...     ok.
    exercise  185 [            phmmer/-A] ...     ok.
    exercise  186 [      phmmer/--tblout] ...     ok.
    exercise  187 [   phmmer/--domtblout] ...     ok.
    exercise  188 [  phmmer/--pfamtblout] ...     ok.
    exercise  189 [         phmmer/--acc] ...     ok.
    exercise  190 [       phmmer/--noali] ...     ok.
    exercise  191 [     phmmer/--notextw] ...     ok.
    exercise  192 [       phmmer/--textw] ...     ok.
    exercise  193 [       phmmer/--popen] ...     ok.
    exercise  194 [     phmmer/--pextend] ...     ok.
    exercise  195 [      phmmer/--mxfile] ...     ok.
    exercise  196 [            phmmer/-E] ...     ok.
    exercise  197 [            phmmer/-T] ...     ok.
    exercise  198 [        phmmer/--domE] ...     ok.
    exercise  199 [        phmmer/--domT] ...     ok.
    exercise  200 [        phmmer/--incE] ...     ok.
    exercise  201 [        phmmer/--incT] ...     ok.
    exercise  202 [     phmmer/--incdomE] ...     ok.
    exercise  203 [     phmmer/--incdomT] ...     ok.
    exercise  204 [         phmmer/--max] ...     ok.
    exercise  205 [          phmmer/--F1] ...     ok.
    exercise  206 [          phmmer/--F2] ...     ok.
    exercise  207 [          phmmer/--F3] ...     ok.
    exercise  208 [      phmmer/--nobias] ...     ok.
    exercise  209 [         phmmer/--EmL] ...     ok.
    exercise  210 [         phmmer/--EmN] ...     ok.
    exercise  211 [         phmmer/--EvL] ...     ok.
    exercise  212 [         phmmer/--EvN] ...     ok.
    exercise  213 [         phmmer/--EfL] ...     ok.
    exercise  214 [         phmmer/--EfN] ...     ok.
    exercise  215 [         phmmer/--Eft] ...     ok.
    exercise  216 [     phmmer/--nonull2] ...     ok.
    exercise  217 [            phmmer/-Z] ...     ok.
    exercise  218 [        phmmer/--domZ] ...     ok.
    exercise  219 [        phmmer/--seed] ...     ok.
    exercise  220 [     phmmer/--qformat] ...     ok.
    exercise  221 [     phmmer/--tformat] ...     ok.
    exercise  222 [               nhmmer] ...     ok.
    exercise  223 [            nhmmer/-h] ...     ok.
    exercise  224 [            nhmmer/-o] ...     ok.
    exercise  225 [            nhmmer/-A] ...     ok.
    exercise  226 [      nhmmer/--tblout] ...     ok.
    exercise  227 [  nhmmer/--dfamtblout] ...     ok.
    exercise  228 [         nhmmer/--acc] ...     ok.
    exercise  229 [       nhmmer/--noali] ...     ok.
    exercise  230 [     nhmmer/--notextw] ...     ok.
    exercise  231 [       nhmmer/--textw] ...     ok.
    exercise  232 [            nhmmer/-E] ...     ok.
    exercise  233 [            nhmmer/-T] ...     ok.
    exercise  234 [        nhmmer/--incE] ...     ok.
    exercise  235 [        nhmmer/--incT] ...     ok.
    exercise  236 [         nhmmer/--max] ...     ok.
    exercise  237 [          nhmmer/--F1] ...     ok.
    exercise  238 [          nhmmer/--F2] ...     ok.
    exercise  239 [          nhmmer/--F3] ...     ok.
    exercise  240 [      nhmmer/--nobias] ...     ok.
    exercise  241 [     nhmmer/--nonull2] ...     ok.
    exercise  242 [            nhmmer/-Z] ...     ok.
    exercise  243 [        nhmmer/--seed] ...     ok.
    exercise  244 [             nhmmscan] ...     ok.
    exercise  245 [          nhmmscan/-h] ...     ok.
    exercise  246 [          nhmmscan/-o] ...     ok.
    exercise  247 [    nhmmscan/--tblout] ...     ok.
    exercise  248 [nhmmscan/--dfamtblout] ...     ok.
    exercise  249 [       nhmmscan/--acc] ...     ok.
    exercise  250 [     nhmmscan/--noali] ...     ok.
    exercise  251 [   nhmmscan/--notextw] ...     ok.
    exercise  252 [     nhmmscan/--textw] ...     ok.
    exercise  253 [          nhmmscan/-E] ...     ok.
    exercise  254 [          nhmmscan/-T] ...     ok.
    exercise  255 [      nhmmscan/--incE] ...     ok.
    exercise  256 [      nhmmscan/--incT] ...     ok.
    exercise  257 [       nhmmscan/--max] ...     ok.
    exercise  258 [        nhmmscan/--F1] ...     ok.
    exercise  259 [        nhmmscan/--F2] ...     ok.
    exercise  260 [        nhmmscan/--F3] ...     ok.
    exercise  261 [    nhmmscan/--nobias] ...     ok.
    exercise  262 [   nhmmscan/--nonull2] ...     ok.
    exercise  263 [          nhmmscan/-Z] ...     ok.
    exercise  264 [      nhmmscan/--seed] ...     ok.
    exercise  265 [              hmmemit] ...     ok.
    exercise  266 [           hmmemit/-h] ...     ok.
    exercise  267 [           hmmemit/-c] ...     ok.
    exercise  268 [           hmmemit/-o] ...     ok.
    exercise  269 [           hmmemit/-p] ...     ok.
    exercise  270 [           hmmemit/-N] ...     ok.
    exercise  271 [           hmmemit/-L] ...     ok.
    exercise  272 [      hmmemit/--local] ...     ok.
    exercise  273 [   hmmemit/--unilocal] ...     ok.
    exercise  274 [     hmmemit/--glocal] ...     ok.
    exercise  275 [  hmmemit/--uniglocal] ...     ok.
    exercise  276 [             hmmfetch] ...     ok.
    exercise  277 [              hmmstat] ...     ok.
    exercise  278 [              hmmlogo] ...     ok.
    exercise  279 [           hmmconvert] ...     ok.
    exercise  280 [               hmmsim] ...     ok.
    exercise  281 [   hmmbuild_variation] ...     ok.
    exercise  282 [    hmmscan_variation] ...     ok.
    exercise  283 [  hmmsearch_variation] ...     ok.
    exercise  284 [     phmmer_variation] ...     ok.
    exercise  285 [               mapali] ...     ok.
    exercise  286 [            fragments] ...     ok.
    exercise  287 [          nonresidues] ...     ok.
    exercise  288 [       opt-annotation] ...     ok.
    exercise  289 [            dup-names] ...     ok.
    exercise  290 [         mapali-again] ...     ok.
    exercise  291 [    delete-corruption] ...     ok.
    exercise  292 [        msa-integrity] ...     ok.
    exercise  293 [    hmmemit-consensus] ...     ok.
    exercise  294 [           hmmconvert] ...     ok.
    exercise  295 [          stdin_pipes] ...     ok.
    exercise  296 [       nhmmer_generic] ...     ok.
    exercise  297 [           hmmpgmd_ga] ...     ok.
    exercise  298 [               rewind] ...     ok.
    exercise  299 [     hmmpgmd_shard_ga] ...     ok.
    exercise  300 [            bad-fasta] ...     ok.
    exercise  301 [          brute-itest] ...     ok.
    exercise  302 [       hmmpress-itest] ...     ok.
    exercise  303 [                  h39] ...     ok.
    exercise  304 [                  h45] ...     ok.
    exercise  305 [                  h50] ...     ok.
    exercise  306 [                  h82] ...     ok.
    exercise  307 [               iss159] ...     ok.
All 307 exercises at level <= 2 passed.
System information:
Wed Nov  9 09:47:17 UTC 2022
Linux e3c15d89fbb14c4c981b695ecad33657 5.17.7-200.fc35.x86_64 #1 SMP PREEMPT Thu May 12 14:56:48 UTC 2022 x86_64 GNU/Linux
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: hmmer-3.3.2-2.fc38.x86_64
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.wvj2X5
+ umask 022
+ cd /builddir/build/BUILD
+ cd hmmer-3.3.2
+ LICENSEDIR=/builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/licenses/hmmer
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/licenses/hmmer
+ cp -pr LICENSE /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/licenses/hmmer
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: hmmer = 3.3.2-2.fc38 hmmer(x86-64) = 3.3.2-2.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.2)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) rtld(GNU_HASH)
Processing files: hmmer-easel-3.3.2-2.fc38.x86_64
Provides: hmmer-easel = 3.3.2-2.fc38 hmmer-easel(x86-64) = 3.3.2-2.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.2)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) rtld(GNU_HASH)
Processing files: hmmer-doc-3.3.2-2.fc38.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.xxpLaD
Provides: hmmer-doc = 3.3.2-2.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: hmmer-debugsource-3.3.2-2.fc38.x86_64
Provides: hmmer-debugsource = 3.3.2-2.fc38 hmmer-debugsource(x86-64) = 3.3.2-2.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: hmmer-debuginfo-3.3.2-2.fc38.x86_64
Provides: debuginfo(build-id) = 01c5fea17114f9cb68c12977e5c072c9b1ec8bd8 debuginfo(build-id) = 063f9b73d9a311e2b752850a86819a2ce80de88c debuginfo(build-id) = 20dd8ba0b1fa146f7de2d032d1ef5ad8bb5f1978 debuginfo(build-id) = 2530f2917c318b2a5331d9950e97a5231f27797f debuginfo(build-id) = 25f13e4885136a894a1f9a053eefbb911aa54145 debuginfo(build-id) = 493821b6757dd4f30b82f7bbc2e32df3d2d3a9ad debuginfo(build-id) = 4975e220b4bdda78c40f1109116ffd2fbe176180 debuginfo(build-id) = 4b38fe06af28dbf771af45805351ffc620c90ee6 debuginfo(build-id) = 54b6f7ef278e838ce847939b481454e8cfaf582a debuginfo(build-id) = 62e32c4e2ac4cb787fd177bc3b3def89d71d23cc debuginfo(build-id) = 83efa50e42c71c18b7efcce70b6777d08809bbb4 debuginfo(build-id) = 89e48f80e09f82b469819aa9367c0612a15cdb93 debuginfo(build-id) = 98a1945ed9cebc25c9ecfc302fe6eb89716f2338 debuginfo(build-id) = a7e27e1f465ec9b4e7202957a03f4459967c7c97 debuginfo(build-id) = ab4c846372f6b07cec0e74ef89a9a9f39df8b60b debuginfo(build-id) = b5f1d5af3f1a29273451c45386dcf1cb08f418a2 debuginfo(build-id) = d0c2658e7a874df660cfd79116d801e94d1ddcf6 debuginfo(build-id) = d777cc90efa5d937ef51113acf485ef5640de5e0 debuginfo(build-id) = daabdb1e707884f0eeb311a662654065a56a4b1c hmmer-debuginfo = 3.3.2-2.fc38 hmmer-debuginfo(x86-64) = 3.3.2-2.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: hmmer-debugsource(x86-64) = 3.3.2-2.fc38
Processing files: hmmer-easel-debuginfo-3.3.2-2.fc38.x86_64
Provides: debuginfo(build-id) = 084da86b579ee10f719b2863227bf2ab615e035c debuginfo(build-id) = 11e812fd3e52adc3e46d7d6896e2b25a2ffb31fe debuginfo(build-id) = 2372ee652570de7ab08e461978d136d7daedad03 debuginfo(build-id) = 30172048bf400a3a9f360b9598b275d4a4379feb debuginfo(build-id) = 3222b39968d5875e6bc5453ace215a551bf77e87 debuginfo(build-id) = 4d5e5e779d5946338fbb0ee0c2d66b64cde341a5 debuginfo(build-id) = 573ec72acfec30fe67ac56470844b916da0ac4cc debuginfo(build-id) = 57f0084b1a443de15256c83e51d713fb163ca546 debuginfo(build-id) = 62eba91f748289bfba5f94adfe9b457d40ccdbb0 debuginfo(build-id) = 64715d8e1ac7e5a6becedb49e348847dc5aaa9be debuginfo(build-id) = 70f3a43404dd3c233ba94cabfeab3086a803ab56 debuginfo(build-id) = 71ed72914019a33aacf8c2e8065891d3d520b35c debuginfo(build-id) = 7ac97b8babbd12bdf5516cb3f17c5d716c21313a debuginfo(build-id) = 9220728cc954c3c4584f357fe584ea8c22314cba debuginfo(build-id) = 99d99d6498cba429011ae997925af721811cfd5d debuginfo(build-id) = 9bdb087ef03794cf9c102650840a761378c2bb40 debuginfo(build-id) = 9df04bf982cc1eb21e5819463995b02e78bccd9f debuginfo(build-id) = ade35e6715ec6be83e9faee78bef74656aa54008 debuginfo(build-id) = b61efe1a1fcf2c15591e9656ea4d7ff96d8887d7 debuginfo(build-id) = b646d0dcb62005f72ae1fe73451c728c43ffa221 debuginfo(build-id) = d2d3245da0d01d83be9e2021f67a962a6cde6697 debuginfo(build-id) = dbdeaafdf6065269c45d4cef777bb49e72454271 debuginfo(build-id) = e59079b9027e76edf51787f91aa2ffab882b944e debuginfo(build-id) = eff24c3ff7e0f73078832edadd46106bf689977c hmmer-easel-debuginfo = 3.3.2-2.fc38 hmmer-easel-debuginfo(x86-64) = 3.3.2-2.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: hmmer-debugsource(x86-64) = 3.3.2-2.fc38
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64
+ umask 022
+ cd /builddir/build/BUILD
+ cd hmmer-3.3.2
+ DOCDIR=/builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/doc/hmmer-doc
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/doc/hmmer-doc
+ cp -pr LICENSE /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/doc/hmmer-doc
+ cp -pr README.md /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/doc/hmmer-doc
+ cp -pr RELEASE-3.3.2.md /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/doc/hmmer-doc
+ cp -pr Userguide.pdf /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/doc/hmmer-doc
+ cp -pr tutorial/ /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64/usr/share/doc/hmmer-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/RPMS/hmmer-easel-debuginfo-3.3.2-2.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/hmmer-debugsource-3.3.2-2.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/hmmer-3.3.2-2.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/hmmer-easel-3.3.2-2.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/hmmer-doc-3.3.2-2.fc38.noarch.rpm
Wrote: /builddir/build/RPMS/hmmer-debuginfo-3.3.2-2.fc38.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.VQuO7g
+ umask 022
+ cd /builddir/build/BUILD
+ cd hmmer-3.3.2
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.fKueDy
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf hmmer-3.3.2 hmmer-3.3.2.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Child return code was: 0